Miyakogusa Predicted Gene

Lj2g3v3373140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3373140.1 gene.g44743.t1.1
         (445 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29090.1 | Symbols:  | Ribonuclease H-like superfamily protei...    92   1e-18
AT3G24255.1 | Symbols:  | RNA-directed DNA polymerase (reverse t...    81   2e-15
AT3G25270.1 | Symbols:  | Ribonuclease H-like superfamily protei...    70   3e-12
ATMG00310.1 | Symbols: ORF154 | RNA-directed DNA polymerase (rev...    68   2e-11
AT2G02650.1 | Symbols:  | Ribonuclease H-like superfamily protei...    58   2e-08
AT3G09510.1 | Symbols:  | Ribonuclease H-like superfamily protei...    57   2e-08
AT5G42905.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    56   5e-08
AT2G34320.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...    49   6e-06

>AT4G29090.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr4:14333528-14335255 FORWARD LENGTH=575
          Length = 575

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 169/447 (37%), Gaps = 95/447 (21%)

Query: 71  ALPTYCMQTSLLPKEFCNKLEKIQRDFVWGTSDRTRAAHPVAWSKYCRPRHEGGLGFRRM 130
           ALPTY M   LLPK  C ++  +  DF W      +  H  AW      + EGG+GF+ +
Sbjct: 2   ALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDI 61

Query: 131 HDFNRALVMKLGWGLVANPNALWDRVIREKY---------ACGSQAIPVVQHRHSESHVW 181
             FN AL+ K  W +++ P +L  +V + +Y           GS+   V +  H+   + 
Sbjct: 62  EAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEIL 121

Query: 182 ----RAIRGTILDSVM-------------------TSPIPF--IDTVRSVADYFDQQRGA 216
               RA+ G   D ++                     P  +  + ++  V+D  D+    
Sbjct: 122 RQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGRE 181

Query: 217 WKLSDFVDYLPAHVVSDILTMPPPAPNIGRDRSREWNY---------------------- 254
           W+  D ++ L   V   ++    P      D S  W+Y                      
Sbjct: 182 WR-KDVIEMLFPEVERKLIGELRPGGRRILD-SYTWDYTSSGDYTVKSGYWVLTQIINKR 239

Query: 255 -----------------VWGLKGPFKVCNFVWRLLHNGLWVNYRRWQSNLTTTPTCPLCD 297
                            +W  +   K+ +F+W+ L N L V       +L+    C  C 
Sbjct: 240 SSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSNSLPVAGALAYRHLSKESACIRCP 299

Query: 298 EADETPLHLFRDCSKVKPRWLHLIYQQHVSEFFAGDLKAWVMRNLQSNCLHSMGRSGPPE 357
              ET  HL   C+  +  W        +     G+    +  NL    + ++G +G P+
Sbjct: 300 SCKETVNHLLFKCTFARLTWAI----SSIPIPLGGEWADSIYVNLY--WVFNLG-NGNPQ 352

Query: 358 FA-------LLLWAIWKSRANFVFQGTPFDLRCMIPMAMKTKLDYAHSLRVLHDPVA-GS 409
           +         LLW +WK+R   VF+G  F+ + ++  A     D     R+  +  + G+
Sbjct: 353 WEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAE----DDLEEWRIRTEAESCGT 408

Query: 410 ARRYEMVQIG-WEPPPDAWLKCNTDGS 435
             +      G W PPP  W+KCNTD +
Sbjct: 409 KPQVNRSSCGRWRPPPHQWVKCNTDAT 435


>AT3G24255.1 | Symbols:  | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           chr3:8789471-8793208 FORWARD LENGTH=746
          Length = 746

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 8/164 (4%)

Query: 21  RYPGVPLAHQRVTARSYQYILDRTQQRLSTWRSLVLNFAGRTTLAKSVISALPTYCMQTS 80
           RY G+PL  +++T   Y  ++++ + R+  W +  L+FAGR  L  SVI +L  + M   
Sbjct: 26  RYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAF 85

Query: 81  LLPKEFCNKLEKIQRDFVWGTSDRTRAAHPVAWSKYCRPRHEGGLGFRRMHDFNRALVMK 140
            LP     +++ I   F+W   +       VAWS  C P+ EGGLG R + + N+     
Sbjct: 86  RLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSF-- 143

Query: 141 LGWGLVANPNA---LWDRVIREKYACGSQAIPVVQHRHSESHVW 181
             W +  N      +W ++++ + A  S  +    H  S +  W
Sbjct: 144 --WSISGNTTLGSWMWKKILKHR-ALASGFVKHDIHNGSNTSFW 184


>AT3G25270.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr3:9203934-9204965 REVERSE LENGTH=343
          Length = 343

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 87/198 (43%), Gaps = 15/198 (7%)

Query: 255 VWGLKGPFKVCNFVWRLLHNGLWVNYRRWQSNLTTTPTCPLCDEADETPLHLFRDCSKVK 314
           +W LK   K+ +F+W+LL   L       + ++   P C  C + DET  HLF DC   +
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRHIRNHPQCHRCCQEDETSQHLFFDCFYAQ 77

Query: 315 PRWLH--LIYQQHVSEFFAGDLKAWVMRNLQSNCLHSMGRSGPPEFAL---LLWAIWKSR 369
             W    + +Q+  +     + K   M  L S+CL       P  F L   +LW +WKSR
Sbjct: 78  QVWRASGIPHQELRTTGITMETK---MELLLSSCL---ANRQPQLFNLAIWILWRLWKSR 131

Query: 370 ANFVFQGTPFDLRCMIPMAMKTKLDYAHS---LRVLHDPVAGSARRY-EMVQIGWEPPPD 425
              VFQ      +  +  A     ++  +   ++ L+  V  S  +   M +  W+ PP 
Sbjct: 132 NQLVFQQKSISWQNTLQRARNDVQEWEDTNTYVQSLNQQVHSSRHQQPTMARTKWQRPPS 191

Query: 426 AWLKCNTDGSVRGPTNSA 443
            W+K N DG+    T +A
Sbjct: 192 TWIKYNYDGAFNHQTRNA 209


>ATMG00310.1 | Symbols: ORF154 | RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein |
           chrM:90883-91347 REVERSE LENGTH=154
          Length = 154

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 4/116 (3%)

Query: 71  ALPTYCMQTSLLPKEFCNKLEKIQRDFVWGTSDRTRAAHPVAWSKYCRPRH-EGGLGFRR 129
           ALP Y M    L K  C KL     +F W + +  R    VAW K C+ +  +GGLGFR 
Sbjct: 2   ALPVYAMSCFRLSKLLCKKLTSAMTEFWWSSCENKRKISWVAWQKLCKSKEDDGGLGFRD 61

Query: 130 MHDFNRALVMKLGWGLVANPNALWDRVIREKYACGSQAIPV-VQHRHSESHVWRAI 184
           +  FN+AL+ K  + ++  P+ L  R++R +Y   S  +   V  R   S+ WR+I
Sbjct: 62  LGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMECSVGTR--PSYAWRSI 115


>AT2G02650.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr2:735411-736546 FORWARD LENGTH=365
          Length = 365

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 21/197 (10%)

Query: 255 VWGLKGPFKVCNFVWRLLHNGLWVNYRRWQSNLTTTPTCPLCDEADETPLHLFRDCSKVK 314
           +W L    K+ +F+WR +   L  N R    N+   P C  C   +ET  H+  +C   +
Sbjct: 37  IWKLHVAPKIKHFLWRCVTGALATNTRLRSRNIDADPICQRCCIEEETIHHIMFNCPYTQ 96

Query: 315 PRW----LHLIYQQHVSEFFAGDLKAWVMRNLQSNCLHSMGRSGPPEFALLLWAIWKSRA 370
             W    + +  Q      F  +L   +  + ++   +S+ R  P     ++W +WKSR 
Sbjct: 97  SVWRSANIIIGNQWGPPSSFEDNLNRLIQLS-KTQTTNSLDRFLP---FWIMWRLWKSRN 152

Query: 371 NFVF----QGTPFDLRCMIPMAMK----TKLDYAHSLRVLHDPVAGSARRYEMVQIGWEP 422
            F+F    Q   ++ R  I  A +     +     ++ V  +P+  S R        W P
Sbjct: 153 VFLFQQKCQSPDYEARKGIQDATEWLNANETTENTNVHVATNPIQTSRRDSSQ----WNP 208

Query: 423 PPDAWLKCNTD-GSVRG 438
           PP+ W+KCN D G  +G
Sbjct: 209 PPEGWVKCNFDSGYTQG 225


>AT3G09510.1 | Symbols:  | Ribonuclease H-like superfamily protein |
           chr3:2921804-2923258 FORWARD LENGTH=484
          Length = 484

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 72/184 (39%), Gaps = 9/184 (4%)

Query: 255 VWGLKGPFKVCNFVWRLLHNGLWVNYRRWQSNLTTTPTCPLCDEADETPLHLFRDCSKVK 314
           +W L    K+ +F+WR L   L    R     +   P+CP C   +E+  H    C    
Sbjct: 162 IWNLPIMPKLKHFLWRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFAT 221

Query: 315 PRW----LHLIYQQHVSEFFAGDLKAWVMRNLQSNCLHSMGRSGPPEFALLLWAIWKSRA 370
             W      LI  Q +S  F  ++   ++  +Q   +    +  P     L+W IWK+R 
Sbjct: 222 MAWRLSDSSLIRNQLMSNDFEENISN-ILNFVQDTTMSDFHKLLP---VWLIWRIWKARN 277

Query: 371 NFVFQGTPFDLRCMIPMAMKTKLDYAHSLRVLHDPVAGSARRYEMVQIGWEPPPDAWLKC 430
           N VF          +  A     D+ ++ +  H       R+    +I W  PP  ++KC
Sbjct: 278 NVVFNKFRESPSKTVLSAKAETHDWLNATQS-HKKTPSPTRQIAENKIEWRNPPATYVKC 336

Query: 431 NTDG 434
           N D 
Sbjct: 337 NFDA 340


>AT5G42905.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr5:17201414-17202323
           REVERSE LENGTH=258
          Length = 258

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 301 ETPLHLFRDCSKVKPRWLHLIYQQHVSEFFAGDLKAWVMRNLQSNCLHSMGRSGP--PEF 358
           E+ LH+FRDC      W+  + ++    FF+  L  W+  NL   C  S     P    F
Sbjct: 25  ESVLHVFRDCPAQLGIWVRFVPRRRQQGFFSKSLFEWLYDNL---CDRSSCEDIPWSTIF 81

Query: 359 ALLLWAIWKSRANFVF-QGTPFDLRCMIPMAMKTKLDYAHSLRVLHDPVAGSARRYEMVQ 417
           A+++W  WK R + +F + T    R         ++  AH    L + + GS +      
Sbjct: 82  AVIIWWGWKWRCSNIFGENTKCRDRVKFVKEWVVEVYRAH----LGNALVGSTQPRVERL 137

Query: 418 IGWEPPPDAWLKCNTDGSVRG 438
           IGW  P   W+K NTDG+ RG
Sbjct: 138 IGWVLPCVGWVKVNTDGASRG 158


>AT2G34320.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:14484959-14485837
           FORWARD LENGTH=292
          Length = 292

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 286 NLTTTPTCPLCDEADETPLHLFRDCSKVKPRWLHLIYQQHVSEFFAGDLKA---WVMRNL 342
           +L    +C  C ++ ET  HL   C   +  W       +    +   L A   WV+ NL
Sbjct: 5   HLFREASCVRCPDSRETVNHLLFKCCFARLVWAISPIPAYPEGEWTDSLYANLYWVL-NL 63

Query: 343 QSNCLHSMGRSGPPEFALLLWAIWKSRANFVFQGTPFDLRCMIPMAMKTKLDYAHSLRVL 402
           +   +  +G+ G      LLW +WKSR   +F+G  +D   ++  AM+   +++ + R L
Sbjct: 64  EVE-IPKLGKIGNL-VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWS-TRREL 120

Query: 403 HDPVAGSARRYEMVQIGWEPPPDAWLKCNTDGS 435
               +G      +  + W+ PP  W+KCNTD +
Sbjct: 121 EGKASGPQVERNL-SVQWKAPPYQWVKCNTDAT 152