Miyakogusa Predicted Gene

Lj2g3v3341860.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3341860.1 Non Chatacterized Hit- tr|H3D0I9|H3D0I9_TETNG
Uncharacterized protein (Fragment) OS=Tetraodon
nigrov,44.44,5e-19,CHOLINE-PHOSPHATE CYTIDYLYLTRANSFERASE,NULL;
CYTIDYLYLTRANSFERASE,NULL; coiled-coil,NULL; seg,NULL,CUFF.40136.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15130.1 | Symbols: ATCCT2, CCT2 | phosphorylcholine cytidyly...   187   6e-48
AT2G32260.1 | Symbols: ATCCT1, CCT1 | phosphorylcholine cytidyly...   184   3e-47

>AT4G15130.1 | Symbols: ATCCT2, CCT2 | phosphorylcholine
           cytidylyltransferase2 | chr4:8637793-8639388 FORWARD
           LENGTH=304
          Length = 304

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 95/136 (69%), Positives = 109/136 (80%), Gaps = 5/136 (3%)

Query: 3   VKAVGKFKETQRTDGISTSDIIMRIVKDYNQYVLRNLDRGYSRKELGVSYVKEKRLRVNR 62
           VK++GKFKET+RT+GISTSDIIMRIVKDYNQYVLRNLDRGYSR+ELGVS+ +EKRLRVN 
Sbjct: 131 VKSIGKFKETKRTEGISTSDIIMRIVKDYNQYVLRNLDRGYSREELGVSF-EEKRLRVNM 189

Query: 63  RLKTLXXXXXXXXXXXXXXXXXVAKTAGMHRNEWVENADRWVAGFLEMFEEGCHKMGTSI 122
           RLK L                 VAKTAGMH +EW+ENADRWVAGFLEMFEEGCHKMGT+I
Sbjct: 190 RLKKL----QEKVKEQQEKIQTVAKTAGMHHDEWLENADRWVAGFLEMFEEGCHKMGTAI 245

Query: 123 IDRIQERLRGQQPRDD 138
            D IQ+RL  Q+  ++
Sbjct: 246 RDGIQQRLMRQESEEN 261


>AT2G32260.1 | Symbols: ATCCT1, CCT1 | phosphorylcholine
           cytidylyltransferase | chr2:13697645-13700241 FORWARD
           LENGTH=332
          Length = 332

 Score =  184 bits (467), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 93/132 (70%), Positives = 104/132 (78%), Gaps = 4/132 (3%)

Query: 3   VKAVGKFKETQRTDGISTSDIIMRIVKDYNQYVLRNLDRGYSRKELGVSYVKEKRLRVNR 62
           VK VG+FKETQRT+GISTSDIIMRIVKDYNQYV+RNLDRGYSR++LGVS+VKEKRLRVN 
Sbjct: 146 VKKVGRFKETQRTEGISTSDIIMRIVKDYNQYVMRNLDRGYSREDLGVSFVKEKRLRVNM 205

Query: 63  RLKTLXXXXXXXXXXXXXXXXXVAKTAGMHRNEWVENADRWVAGFLEMFEEGCHKMGTSI 122
           RLK L                   +T  M RNEWVENADRWVAGFLE+FEEGCHKMGT+I
Sbjct: 206 RLKKLQERVKEQQERVGEK----IQTVKMLRNEWVENADRWVAGFLEIFEEGCHKMGTAI 261

Query: 123 IDRIQERLRGQQ 134
           +D IQERL  Q+
Sbjct: 262 VDSIQERLMRQK 273