Miyakogusa Predicted Gene

Lj2g3v3340820.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3340820.2 tr|D7MTV5|D7MTV5_ARALL Zinc finger family protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_,40.09,7e-19,ZINC
FINGER (C3HC4-TYPE RING FINGER) PROTEIN-LIKE (OS01G0610700
PROTEIN),NULL; MEMBRANE ASSOCIATED R,CUFF.40132.2
         (291 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G60580.4 | Symbols:  | RING/U-box superfamily protein | chr5:...   102   5e-22
AT5G60580.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   102   5e-22
AT5G60580.3 | Symbols:  | RING/U-box superfamily protein | chr5:...   101   5e-22
AT5G60580.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   101   5e-22
AT3G09760.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    77   1e-14
AT5G03180.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    65   4e-11
AT5G03180.2 | Symbols:  | RING/U-box superfamily protein | chr5:...    65   5e-11
AT5G18760.1 | Symbols:  | RING/U-box superfamily protein | chr5:...    49   3e-06

>AT5G60580.4 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=494
          Length = 494

 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 134/269 (49%), Gaps = 46/269 (17%)

Query: 35  DDQTSLIAQSRKPSLSSLQIPARSI-----ESALSSFTRTD---------GPTLSSPGST 80
           +D ++ + Q R+ +LS LQIP+R+      +S +     T            T SSPG  
Sbjct: 33  EDTSANVQQWRRKNLS-LQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNFALTSSSPG-- 89

Query: 81  RGLPPRPNSAKV----KSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGAL---- 132
               P P S+ V    KSS++NLL     + KTS+ D E+            G A     
Sbjct: 90  ----PTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEK----------GQGNACSPPA 135

Query: 133 -DHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQH 191
              K S SRSLSL+K+  P   K   SLPVTP   S  E+  G    +    ++ K + H
Sbjct: 136 SQEKASISRSLSLSKLFTP-RIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNR-KGSVH 193

Query: 192 MTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSDIVIEDA-SEDI 250
           + RS SVP+N +    K  DS    RVI + P +    D+ S+ +   +    DA  EDI
Sbjct: 194 IARSRSVPLNDKELSLKGMDS--FFRVIPSTPRVKE-GDVFSNASEAGNTETGDADGEDI 250

Query: 251 PEEEAVCRICFVELGEGGNTLRMDCSCKG 279
           PE+EAVCRIC VEL EGG TL+M+CSCKG
Sbjct: 251 PEDEAVCRICLVELCEGGETLKMECSCKG 279


>AT5G60580.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=494
          Length = 494

 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 134/269 (49%), Gaps = 46/269 (17%)

Query: 35  DDQTSLIAQSRKPSLSSLQIPARSI-----ESALSSFTRTD---------GPTLSSPGST 80
           +D ++ + Q R+ +LS LQIP+R+      +S +     T            T SSPG  
Sbjct: 33  EDTSANVQQWRRKNLS-LQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNFALTSSSPG-- 89

Query: 81  RGLPPRPNSAKV----KSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGAL---- 132
               P P S+ V    KSS++NLL     + KTS+ D E+            G A     
Sbjct: 90  ----PTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEK----------GQGNACSPPA 135

Query: 133 -DHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQH 191
              K S SRSLSL+K+  P   K   SLPVTP   S  E+  G    +    ++ K + H
Sbjct: 136 SQEKASISRSLSLSKLFTP-RIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNR-KGSVH 193

Query: 192 MTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSDIVIEDA-SEDI 250
           + RS SVP+N +    K  DS    RVI + P +    D+ S+ +   +    DA  EDI
Sbjct: 194 IARSRSVPLNDKELSLKGMDS--FFRVIPSTPRVKE-GDVFSNASEAGNTETGDADGEDI 250

Query: 251 PEEEAVCRICFVELGEGGNTLRMDCSCKG 279
           PE+EAVCRIC VEL EGG TL+M+CSCKG
Sbjct: 251 PEDEAVCRICLVELCEGGETLKMECSCKG 279


>AT5G60580.3 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=487
          Length = 487

 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 134/269 (49%), Gaps = 46/269 (17%)

Query: 35  DDQTSLIAQSRKPSLSSLQIPARSI-----ESALSSFTRTD---------GPTLSSPGST 80
           +D ++ + Q R+ +LS LQIP+R+      +S +     T            T SSPG  
Sbjct: 33  EDTSANVQQWRRKNLS-LQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNFALTSSSPG-- 89

Query: 81  RGLPPRPNSAKV----KSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGAL---- 132
               P P S+ V    KSS++NLL     + KTS+ D E+            G A     
Sbjct: 90  ----PTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEK----------GQGNACSPPA 135

Query: 133 -DHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQH 191
              K S SRSLSL+K+  P   K   SLPVTP   S  E+  G    +    ++ K + H
Sbjct: 136 SQEKASISRSLSLSKLFTP-RIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNR-KGSVH 193

Query: 192 MTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSDIVIEDA-SEDI 250
           + RS SVP+N +    K  DS    RVI + P +    D+ S+ +   +    DA  EDI
Sbjct: 194 IARSRSVPLNDKELSLKGMDS--FFRVIPSTPRVKE-GDVFSNASEAGNTETGDADGEDI 250

Query: 251 PEEEAVCRICFVELGEGGNTLRMDCSCKG 279
           PE+EAVCRIC VEL EGG TL+M+CSCKG
Sbjct: 251 PEDEAVCRICLVELCEGGETLKMECSCKG 279


>AT5G60580.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:24354298-24356706 FORWARD LENGTH=487
          Length = 487

 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/269 (36%), Positives = 134/269 (49%), Gaps = 46/269 (17%)

Query: 35  DDQTSLIAQSRKPSLSSLQIPARSI-----ESALSSFTRTD---------GPTLSSPGST 80
           +D ++ + Q R+ +LS LQIP+R+      +S +     T            T SSPG  
Sbjct: 33  EDTSANVQQWRRKNLS-LQIPSRAAGLSPEDSVVIKMPPTPSPTPRRVNFALTSSSPG-- 89

Query: 81  RGLPPRPNSAKV----KSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGAL---- 132
               P P S+ V    KSS++NLL     + KTS+ D E+            G A     
Sbjct: 90  ----PTPTSSSVLPRGKSSLKNLLPKAGCKPKTSNTDIEK----------GQGNACSPPA 135

Query: 133 -DHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQH 191
              K S SRSLSL+K+  P   K   SLPVTP   S  E+  G    +    ++ K + H
Sbjct: 136 SQEKASISRSLSLSKLFTP-RIKRTSSLPVTPVILSNSESAHGGTSVAPQTPNR-KGSVH 193

Query: 192 MTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSDIVIEDA-SEDI 250
           + RS SVP+N +    K  DS    RVI + P +    D+ S+ +   +    DA  EDI
Sbjct: 194 IARSRSVPLNDKELSLKGMDS--FFRVIPSTPRVKE-GDVFSNASEAGNTETGDADGEDI 250

Query: 251 PEEEAVCRICFVELGEGGNTLRMDCSCKG 279
           PE+EAVCRIC VEL EGG TL+M+CSCKG
Sbjct: 251 PEDEAVCRICLVELCEGGETLKMECSCKG 279


>AT3G09760.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:2992975-2995451 REVERSE LENGTH=491
          Length = 491

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 95/192 (49%), Gaps = 24/192 (12%)

Query: 94  SSMRNLLSARSFRAKTSSQD---CERKVLIVPDTLPSDGGALDHKPSTSRSLSLNKVVFP 150
           +S++NL+   SF+ + S+ D    E+   +   + PS G   D       + +L  ++ P
Sbjct: 115 NSLKNLIPKLSFKNRNSNNDNVDIEKAADLGFVSSPSSGNGRDRS-----TWTLTNILTP 169

Query: 151 ASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQHMTRSFSVPVNVQTTISKPT 210
              K   SLPVTP  +S  E+  GR        +K      + RS SVP       +K  
Sbjct: 170 -RLKKTESLPVTPIAHSNPESTHGRFAVDLVTSTKKGPPLPIHRSRSVP-----AFNKDG 223

Query: 211 DSRRL--IRVISARPNL-PTIDDISSHNTSVSDIVIEDASEDIPEEEAVCRICFVELGEG 267
             R+L   RVI   PN+ PT + I  ++ +V      D +ED+PEEEAVCRIC VELGE 
Sbjct: 224 SQRQLGVFRVIPT-PNMSPTRNTIKLNDANV------DGAEDVPEEEAVCRICLVELGED 276

Query: 268 GNTLRMDCSCKG 279
               +M+C C+G
Sbjct: 277 SEAFKMECLCRG 288


>AT5G03180.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:754201-756411 REVERSE LENGTH=462
          Length = 462

 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 77/276 (27%), Positives = 122/276 (44%), Gaps = 37/276 (13%)

Query: 23  LLHHQTCGGN------GEDDQ-TSLIAQSRKPSLSSLQIPARSIESALSSFTRTDGPTLS 75
           ++ H +C G       G+  + T +++ S+      L +  +S E A   F R +G  + 
Sbjct: 12  VVEHWSCEGTSPALMVGDSTEITEMLSPSQHQRWRGLVLDIQSRE-AHGDFLRANGSLIH 70

Query: 76  SPGSTR-GLPPR--PNSAKVKSSM-----RNLLSARSFRAKTSSQDCERKVLIVPDTLPS 127
           SP S R    P   P + +   SM     RN  + ++F+ +  S D E  V+    +   
Sbjct: 71  SPVSKRFKFSPMSSPRTGRRVGSMSPSSSRNRTNQKNFKNRNHSADIEEGVV----SPLG 126

Query: 128 DGGALDHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMK 187
           DG    + P   R+ SL  ++ P  +K   S       +S  E+++GR+       + MK
Sbjct: 127 DGSDKSYIP---RTWSLTNLLAPRKSKKTESFIT----HSNPESMNGRYAVEVDPVTSMK 179

Query: 188 VNQHM--TRSFSVPVNVQTTIS-KPTDSRRLIRVISARPNLPTIDDISSHNTSVSDI-VI 243
             + +   R+ SVP       S KP+   R+I      P     D+     T  S +   
Sbjct: 180 GERLLPIRRTRSVPTFFNKDGSVKPSSVFRVI------PTPSRGDEKRLEMTQASKLNEN 233

Query: 244 EDASEDIPEEEAVCRICFVELGEGGNTLRMDCSCKG 279
           +D  ED+PEEEAVCRIC VE+ E     +M+C CKG
Sbjct: 234 DDGGEDVPEEEAVCRICMVEMEEDEEAFKMECMCKG 269


>AT5G03180.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:754201-756411 REVERSE LENGTH=466
          Length = 466

 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 41/280 (14%)

Query: 23  LLHHQTCGGN------GEDDQ-TSLIAQSRKPSLSSLQIPARSIESALSSFTRTDGPTLS 75
           ++ H +C G       G+  + T +++ S+      L +  +S E A   F R +G  + 
Sbjct: 12  VVEHWSCEGTSPALMVGDSTEITEMLSPSQHQRWRGLVLDIQSRE-AHGDFLRANGSLIH 70

Query: 76  SPGSTR-GLPPR--PNSAKVKSSM-----RNLLSARSFRAKTSSQDCERKVLIVPDTLPS 127
           SP S R    P   P + +   SM     RN  + ++F+ +  S D E  V+    +   
Sbjct: 71  SPVSKRFKFSPMSSPRTGRRVGSMSPSSSRNRTNQKNFKNRNHSADIEEGVV----SPLG 126

Query: 128 DGGALDHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMK 187
           DG    + P   R+ SL  ++ P  +K   S       +S  E+++GR+       + MK
Sbjct: 127 DGSDKSYIP---RTWSLTNLLAPRKSKKTESFIT----HSNPESMNGRYAVEVDPVTSMK 179

Query: 188 VNQHM--TRSFSVPVNVQTTIS-KPTDSRRLI----RVISARPNLPTIDDISS-HNTSVS 239
             + +   R+ SVP       S KP+   R+I    R    R  +     +S  H+ +  
Sbjct: 180 GERLLPIRRTRSVPTFFNKDGSVKPSSVFRVIPTPSRGDEKRLEMTQASKLSKLHDEN-- 237

Query: 240 DIVIEDASEDIPEEEAVCRICFVELGEGGNTLRMDCSCKG 279
               +D  ED+PEEEAVCRIC VE+ E     +M+C CKG
Sbjct: 238 ----DDGGEDVPEEEAVCRICMVEMEEDEEAFKMECMCKG 273


>AT5G18760.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:6258508-6260828 REVERSE LENGTH=411
          Length = 411

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 101/201 (50%), Gaps = 36/201 (17%)

Query: 83  LPPRPNSAKVKSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGALDHKPSTS--- 139
           +PP+P  +     +RNL    S + K S  + ER++L+ P    +    L   P TS   
Sbjct: 56  IPPKPTPSL--GILRNL----SLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYW 109

Query: 140 -RSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQHMTRSFSV 198
            R LSL     P+S  A  SL V+ +  S    V    P+S+ D     ++  ++RS S+
Sbjct: 110 KRCLSL-----PSSNSAKLSLVVSTTPVSAV--VHSEQPKSNKD----GLHASVSRSLSM 158

Query: 199 PVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSDIVIEDASEDIPEEEAVCR 258
                        +R ++R +S   N   I +  ++   ++ +  E+  E+IPEEEAVCR
Sbjct: 159 -------------NRVIVRAVSFDDNKNHISN-EANGDQITPVPAEETEEEIPEEEAVCR 204

Query: 259 ICFVELGEGGNTLRMDCSCKG 279
           IC +++ E GNTL+M+CSCKG
Sbjct: 205 IC-LDVCEEGNTLKMECSCKG 224