Miyakogusa Predicted Gene

Lj2g3v3339640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339640.1 tr|A9T5C3|A9T5C3_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,57.14,2e-16, ,CUFF.40108.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   139   3e-34
AT4G13500.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   137   2e-33

>AT2G05310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50
           proteins in 20 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:1933391-1934145 REVERSE LENGTH=125
          Length = 125

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/77 (80%), Positives = 71/77 (92%)

Query: 43  RVHAKIGGSDEDTKKGEKKKFITRDEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPF 102
           ++HAK+GG D + K  +KKKFIT+DEEP+QYWQ+ GEREGENPMKTPLPYIIIFGMSTPF
Sbjct: 49  KLHAKLGGGDGEVKPKDKKKFITKDEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPF 108

Query: 103 VILAIAFANGWIKVPVR 119
           VILAIAFANGWIKVP+R
Sbjct: 109 VILAIAFANGWIKVPIR 125


>AT4G13500.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50
           proteins in 20 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:7856987-7857874 REVERSE LENGTH=125
          Length = 125

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/77 (79%), Positives = 71/77 (92%)

Query: 43  RVHAKIGGSDEDTKKGEKKKFITRDEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPF 102
           ++HAK+GG D + K  +KKKFIT++EEP+QYWQ+ GEREGENPMKTPLPYIIIFGMSTPF
Sbjct: 49  KLHAKLGGGDGEVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPF 108

Query: 103 VILAIAFANGWIKVPVR 119
           VILAIAFANGWIKVP+R
Sbjct: 109 VILAIAFANGWIKVPIR 125