Miyakogusa Predicted Gene

Lj2g3v3339500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339500.1 Non Chatacterized Hit- tr|J3LSR2|J3LSR2_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB03G4,40.35,0.000000000000001,GOLD,GOLD; EMP24_GP25L,GOLD;
EMP24/GP25L/P24 FAMILY PROTEIN,NULL; TRANSMEMBRANE EMP24
DOMAIN-CONTAIN,CUFF.40095.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07680.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family pro...   334   3e-92
AT3G22845.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family pro...   136   9e-33
AT1G26690.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family pro...    50   1e-06

>AT3G07680.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family
           protein | chr3:2455627-2456652 FORWARD LENGTH=208
          Length = 208

 Score =  334 bits (856), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 152/201 (75%), Positives = 180/201 (89%)

Query: 12  ALIGVFWNLKASEGIRFVIDRDECFSHDVKYEGDTVHISFVVIKADSPWHYGDEGVDLVV 71
            L+G+ W+ +A+ GIRFVIDR+ECFSH  +YEGDT+H+SFVVIK+DS WH+ ++GVDLV+
Sbjct: 8   VLLGLLWSFQATLGIRFVIDREECFSHKAEYEGDTLHVSFVVIKSDSQWHFNEDGVDLVI 67

Query: 72  KGPAGEQIHDFRDKTSEKFEFVAHKSGVHKFCFTNKSPYHETIDFDVHVGHFSYYEQHAK 131
            GP GEQIHDFR++ S K +FV  K GV++FCFTNKSPYHETIDFDV +GHF+YY+QHAK
Sbjct: 68  HGPTGEQIHDFREQISAKHDFVVQKKGVYRFCFTNKSPYHETIDFDVQLGHFAYYDQHAK 127

Query: 132 DEHFTPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAIHKALFESAALIGA 191
           DEHFTPL+EQI+KLEEALYNIQFEQHWLEAQTDRQAIVN+ MS+RA+HKALFES ALIGA
Sbjct: 128 DEHFTPLMEQISKLEEALYNIQFEQHWLEAQTDRQAIVNENMSKRAVHKALFESFALIGA 187

Query: 192 SALQVYLLQRLFERKLGTSRV 212
           S LQVYLL+RLFERKLG SRV
Sbjct: 188 SFLQVYLLRRLFERKLGMSRV 208


>AT3G22845.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family
           protein | chr3:8087373-8088550 FORWARD LENGTH=214
          Length = 214

 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 114/209 (54%), Gaps = 4/209 (1%)

Query: 6   IHVLLFALIGVFW--NLKASEGIRFVIDRDECFSHDVKYEGDTVHISFVVIKADSPWHYG 63
           IHV  F LIG+    ++     +   ++ +EC    V YEGDTV  +FVV+  D  W   
Sbjct: 8   IHV--FVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSD 65

Query: 64  DEGVDLVVKGPAGEQIHDFRDKTSEKFEFVAHKSGVHKFCFTNKSPYHETIDFDVHVGHF 123
             G+D  V  PAG  +   +  + +KFEF A KSG++KFCF N     ET+ F +HVGH 
Sbjct: 66  HPGLDFTVTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHI 125

Query: 124 SYYEQHAKDEHFTPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAIHKALF 183
                 AKDEH  P+  +IA+L EAL ++  EQ +L+A+  R    N++  +R I   + 
Sbjct: 126 PNEHDLAKDEHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTNESTRKRVIFYTVG 185

Query: 184 ESAALIGASALQVYLLQRLFERKLGTSRV 212
           E   L  AS LQV  +++LF + +  +RV
Sbjct: 186 EYIFLAAASGLQVLYIRKLFSKSVAYNRV 214


>AT1G26690.1 | Symbols:  | emp24/gp25L/p24 family/GOLD family
           protein | chr1:9224299-9225682 REVERSE LENGTH=214
          Length = 214

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 10/211 (4%)

Query: 2   GLSLIHVLLFALIGVFWNLKASEGIRFVID--RDECFSHDVKYEGDTVHISFVVIKADSP 59
            L+L  +LLF  I      + S+ + F +   R +C S D+K    TV    VV   ++ 
Sbjct: 5   SLNLCTILLFLAISS----QVSQSLHFELQSGRTKCISEDIKSNSMTVGKYTVVNPNEAH 60

Query: 60  WHYGDEGVDLVVKGPAGEQIHDFRDKTSEKFEFVAHKSGVHKFCFT---NKSPYHETIDF 116
                  + + V    G   H   D  S +F F A +SG +  C+T   +K     +IDF
Sbjct: 61  PSPQSHKISIRVTSSYGNTYHHAEDVESGQFAFTAVESGDYMACYTAVDHKPEVTLSIDF 120

Query: 117 DVHVG-HFSYYEQHAKDEHFTPLLEQIAKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSR 175
           D   G     +   AK      +   + +L E + +I  E  +L  + +    +N A + 
Sbjct: 121 DWRTGVQSKSWSSVAKKSQVEVMEFDVKRLIETVNSIHEEMFYLREREEEMQNLNRATNS 180

Query: 176 RAIHKALFESAALIGASALQVYLLQRLFERK 206
           +    +       +G + +Q   L+  FE+K
Sbjct: 181 KMAWLSFLSLFVCLGVAGMQFVHLKTFFEKK 211