Miyakogusa Predicted Gene

Lj2g3v3339040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3339040.1 tr|I0Z3N6|I0Z3N6_9CHLO Translational machinery
component OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,46.39,0.0000000000001,no description,NULL; seg,NULL;
Translational machinery components,NULL; Ribosomal_L18p,Ribosomal
pro,CUFF.40077.1
         (114 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   144   1e-35
AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    58   1e-09
AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    58   1e-09
AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    57   2e-09
AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    49   6e-07

>AT5G27820.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr5:9860584-9860928 FORWARD LENGTH=114
          Length = 114

 Score =  144 bits (362), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 83/101 (82%)

Query: 14  NFLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKIL 73
           ++LKPYVL+MHFTNK+V AQVIH            QEKALR +++  RDVAAA+KIGKIL
Sbjct: 14  DYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKIL 73

Query: 74  AERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGVKLL 114
            ERLL+K+IPAV++ +K+EQ+YHGKVKAV+DS+REAGVKLL
Sbjct: 74  GERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114


>AT1G08845.2 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2838789-2840955 FORWARD LENGTH=234
          Length = 234

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 53/99 (53%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L +R D+ A   IG+IL+
Sbjct: 131 YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 190

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGVKL 113
           ER    ++   S   + + K+ GK++AVV SL + G+ +
Sbjct: 191 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 229


>AT1G08845.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:2839855-2840955 FORWARD LENGTH=189
          Length = 189

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 53/99 (53%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKILA 74
           +++P+ L +  + ++VSA + H              K +++ L +R D+ A   IG+IL+
Sbjct: 86  YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 145

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGVKL 113
           ER    ++   S   + + K+ GK++AVV SL + G+ +
Sbjct: 146 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDV 184


>AT3G20230.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:7055639-7056679 REVERSE LENGTH=187
          Length = 187

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 57/97 (58%)

Query: 15  FLKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRRDVAAAAKIGKILA 74
           +++P++L + F+ K++ A+V+H              + +R+++ +  D  A   IGK++A
Sbjct: 87  YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 146

Query: 75  ERLLLKEIPAVSVHLKREQKYHGKVKAVVDSLREAGV 111
           ER +  ++ AVS   ++ ++  GK+  V+D+++E G+
Sbjct: 147 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183


>AT3G45020.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr3:16469167-16469568 REVERSE LENGTH=133
          Length = 133

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 12/111 (10%)

Query: 16  LKPYVLRMHFTNKYVSAQVIHXXXXXXXXXXXXQEKALRSSLETRR--DVAAAAKIGKIL 73
           LK YVLR+  + KY++A V+              E  +++SLE  R  +  AAA +G++L
Sbjct: 4   LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63

Query: 74  AERL---LLKEIPAVSVH--LKREQKYHG-----KVKAVVDSLREAGVKLL 114
           A RL    L++     +H  +K+E +  G     KV AV++SLR  GV L+
Sbjct: 64  AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114