Miyakogusa Predicted Gene
- Lj2g3v3339010.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3339010.2 Non Chatacterized Hit- tr|I1JJR4|I1JJR4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.20815
PE,91.44,0,RRM_1,RNA recognition motif domain; no
description,Nucleotide-binding, alpha-beta plait; RNA
recogni,CUFF.40071.2
(478 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 483 e-136
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 482 e-136
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 372 e-103
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 372 e-103
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 360 e-99
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 344 7e-95
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 344 8e-95
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 335 5e-92
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 335 5e-92
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 335 6e-92
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 335 6e-92
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 268 9e-72
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 239 3e-63
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 231 7e-61
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 182 3e-46
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 174 1e-43
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 164 1e-40
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 161 1e-39
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 150 1e-36
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 137 2e-32
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 137 2e-32
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 92 7e-19
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 92 8e-19
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 92 1e-18
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 4e-17
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 4e-17
AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 8e-17
AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 86 8e-17
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-16
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 82 6e-16
AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 81 1e-15
AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 81 1e-15
AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 81 1e-15
AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 81 1e-15
AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A | chr3... 81 1e-15
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 79 5e-15
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 78 1e-14
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 77 2e-14
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 77 3e-14
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 77 3e-14
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 76 6e-14
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 75 1e-13
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 75 1e-13
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 2e-13
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 3e-13
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 3e-13
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 73 5e-13
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 5e-13
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 73 5e-13
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 73 5e-13
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 73 5e-13
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 72 6e-13
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 1e-12
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 1e-12
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 72 1e-12
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 72 1e-12
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 1e-12
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 71 2e-12
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 71 2e-12
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 70 2e-12
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 70 2e-12
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 3e-12
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 70 3e-12
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 70 4e-12
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 70 4e-12
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 69 5e-12
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 69 6e-12
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 69 7e-12
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 69 7e-12
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 8e-12
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 69 9e-12
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 69 1e-11
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 68 1e-11
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 68 1e-11
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 67 2e-11
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 2e-11
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 67 3e-11
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 67 3e-11
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 67 3e-11
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 66 5e-11
AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 8e-11
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 65 9e-11
AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 65 1e-10
AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 65 1e-10
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 65 1e-10
AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs) ... 65 1e-10
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 64 2e-10
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 64 3e-10
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 3e-10
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 64 3e-10
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 64 3e-10
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 64 3e-10
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 63 4e-10
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 63 4e-10
AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 5e-10
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 63 5e-10
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 63 5e-10
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 63 5e-10
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 62 6e-10
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 62 8e-10
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 62 9e-10
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 2e-09
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 60 3e-09
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 60 4e-09
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 60 4e-09
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 5e-09
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 6e-09
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 59 7e-09
AT2G47310.1 | Symbols: | flowering time control protein-related... 59 8e-09
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 59 9e-09
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 9e-09
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 58 2e-08
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 57 3e-08
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 3e-08
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 57 4e-08
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 6e-08
AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 8e-08
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 55 9e-08
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 1e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 1e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 1e-07
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 55 1e-07
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 1e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 2e-07
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 54 2e-07
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 54 2e-07
AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large subu... 54 3e-07
AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-07
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 53 4e-07
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 52 7e-07
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 52 7e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 8e-07
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 52 1e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 1e-06
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 1e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 51 2e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 51 2e-06
AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920... 51 2e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 51 2e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 51 2e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 51 2e-06
AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 50 3e-06
AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor, l... 50 3e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 4e-06
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 483 bits (1242), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/320 (75%), Positives = 270/320 (84%), Gaps = 4/320 (1%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
MQSDNGKLFIGGISWDT EERL+EYFS++GEV+EAVI+KDRTTGRARGFGFVVF+DPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSR-NSGSIHGSPG-PGRTRKIFVGGLASTVT 118
+IVI EKHNIDGR+VEAKKAVPRDDQ +++R NS SI GSPG PGRTRKIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYDSEEAV+KVLLKTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 179 KRAVPKELSPGPSRSPLG-GYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAG 237
KRAVPKELSPGPSRSPLG GYSYG+NRVN+ LNG+ QG+ P VGGYGLRMDGRFSPV
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 238 GRSGFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYE 297
GRSGFA SGYGMN+NF+ GL NV YGRG++PY++G++NR+G VGYE
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 298 -XXXXXXXXXXXXVTRNLWG 316
VTRNLWG
Sbjct: 301 GGNGGGNSSFFSSVTRNLWG 320
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 406 SNGGVDGA-FSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAA---SDVSAKSSPGY 461
+N G D A ++FY N +VY DPTWRS E +G PF YG+GG + SSPGY
Sbjct: 418 NNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGY 477
Query: 462 VGGYTVNKRQPNRGIA 477
VG Y+VNKRQPNRGIA
Sbjct: 478 VGSYSVNKRQPNRGIA 493
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 243/320 (75%), Positives = 270/320 (84%), Gaps = 4/320 (1%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
MQSDNGKLFIGGISWDT EERL+EYFS++GEV+EAVI+KDRTTGRARGFGFVVF+DPAVA
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSR-NSGSIHGSPG-PGRTRKIFVGGLASTVT 118
+IVI EKHNIDGR+VEAKKAVPRDDQ +++R NS SI GSPG PGRTRKIFVGGL S+VT
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEV 178
ESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYDSEEAV+KVLLKTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180
Query: 179 KRAVPKELSPGPSRSPLG-GYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAG 237
KRAVPKELSPGPSRSPLG GYSYG+NRVN+ LNG+ QG+ P VGGYGLRMDGRFSPV
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240
Query: 238 GRSGFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYE 297
GRSGFA SGYGMN+NF+ GL NV YGRG++PY++G++NR+G VGYE
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300
Query: 298 -XXXXXXXXXXXXVTRNLWG 316
VTRNLWG
Sbjct: 301 GGNGGGNSSFFSSVTRNLWG 320
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 406 SNGGVDGA-FSDFYNNNSVYGDPTWRSSNSERDGSGPFGYGLGGAA---SDVSAKSSPGY 461
+N G D A ++FY N +VY DPTWRS E +G PF YG+GG + SSPGY
Sbjct: 418 NNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPGY 477
Query: 462 VGGYTVNKRQPNRG 475
VG Y+VNKRQPNRG
Sbjct: 478 VGSYSVNKRQPNRG 491
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/327 (56%), Positives = 238/327 (72%), Gaps = 5/327 (1%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+ ++ KLFIGGISW+T+E+RLR+YF ++GEV+EAVIMKDR TGRARGFGFVVF+DP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ V+ KH IDG++VEAKKAVPRDD V ++++ S+ GSPGP ++KIFVGGLAS+VTE+
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEEAVDKVL KTFHELNGKMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 181 AVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
AVPK+++ R+ + S+G +R++S LN +TQG++P+ + GYG++ + R+SP G R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
GF+P G GYG+ LNFEP T R +P + S R+GS +
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG----RPFSPGYAASLGRFGSQMESGGAS 296
Query: 301 XXXXXXXXXVTRN-LWGNGGLNYGTSS 326
+N LWGNGGL Y ++S
Sbjct: 297 VGNGSVLNAAPKNHLWGNGGLGYMSNS 323
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 372 bits (956), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/327 (56%), Positives = 238/327 (72%), Gaps = 5/327 (1%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+ ++ KLFIGGISW+T+E+RLR+YF ++GEV+EAVIMKDR TGRARGFGFVVF+DP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ V+ KH IDG++VEAKKAVPRDD V ++++ S+ GSPGP ++KIFVGGLAS+VTE+
Sbjct: 61 ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEEAVDKVL KTFHELNGKMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 181 AVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
AVPK+++ R+ + S+G +R++S LN +TQG++P+ + GYG++ + R+SP G R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
GF+P G GYG+ LNFEP T R +P + S R+GS +
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG----RPFSPGYAASLGRFGSQMESGGAS 296
Query: 301 XXXXXXXXXVTRN-LWGNGGLNYGTSS 326
+N LWGNGGL Y ++S
Sbjct: 297 VGNGSVLNAAPKNHLWGNGGLGYMSNS 323
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 360 bits (925), Expect = e-99, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 238/349 (68%), Gaps = 27/349 (7%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+ ++ KLFIGGISW+T+E+RLR+YF ++GEV+EAVIMKDR TGRARGFGFVVF+DP VA
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 61 DIVIKEKHNIDGRM----------------------VEAKKAVPRDDQTVLSRNSGSIHG 98
+ V+ KH IDG++ VEAKKAVPRDD V ++++ S+ G
Sbjct: 61 ERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQG 120
Query: 99 SPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 158
SPGP ++KIFVGGLAS+VTE++FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEE
Sbjct: 121 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 180
Query: 159 AVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTP 218
AVDKVL KTFHELNGKMVEVK AVPK+++ R+ + S+G +R++S LN +TQG++P
Sbjct: 181 AVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 240
Query: 219 NTVGGYGLRMDGRFSPVAGGRSGFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRG 278
+ + GYG++ + R+SP G R GF+P G GYG+ LNFEP T R
Sbjct: 241 SPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG----RP 296
Query: 279 LNPYFVGSSNRYGSPVGYEXXXXXXXXXXXXVTRN-LWGNGGLNYGTSS 326
+P + S R+GS + +N LWGNGGL Y ++S
Sbjct: 297 FSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNS 345
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 344 bits (883), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 227/331 (68%), Gaps = 34/331 (10%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD GKLFIGGISWDT EERL+EYF YG++VEAVIM+DRTTGRARGFGF+VF+DP+VA+
Sbjct: 9 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH-------GSPGPGRTRKIFVGGLAS 115
VI +KH IDGR VEAKKAVPRDDQ VL R++ +H G+ G RT+KIFVGGL S
Sbjct: 69 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 128
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
++TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD VL KTFHELNGKM
Sbjct: 129 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 188
Query: 176 VEVKRAVPKELSP-GPSRSPLGGY--SYGL--NR--VNSFLNGFTQGYTPNTVGGYGLRM 228
VEVKRAVPKELS P+RSPL GY +YG+ NR NS+ N F GY N +G
Sbjct: 189 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA---- 244
Query: 229 DGRFSPVAGGRSGFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGL-NPYFVGSS 287
GRFSP+ GR+ F+ G G LN + + Y R N YF +S
Sbjct: 245 -GRFSPIGSGRNAFSSFGLGLNQELNLNSNFD---------GNTLGYSRIPGNQYFNSAS 294
Query: 288 -NRYGSPVGYEXXXXXXXXXXXXVTRNLWGN 317
NRY SP+GY R+LWGN
Sbjct: 295 PNRYNSPIGYNRGDSAYNPS----NRDLWGN 321
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 402 SYSASNGGVDGAFSDFYNNNSVYGDPTWRSS------NSERDG-SGPFGYGLGGAASDVS 454
S++ + G DG+ + Y +SVY D TW+ S ++E DG S +G+G+ SD S
Sbjct: 369 SFAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPS 428
Query: 455 AKSSPGYVGGYTVNKRQPNRGIAA 478
A +S GY G Y V RQ +RGI A
Sbjct: 429 ANASEGYSGNYNVGNRQTHRGIEA 452
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 344 bits (882), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 194/331 (58%), Positives = 227/331 (68%), Gaps = 34/331 (10%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD GKLFIGGISWDT EERL+EYF YG++VEAVIM+DRTTGRARGFGF+VF+DP+VA+
Sbjct: 12 SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH-------GSPGPGRTRKIFVGGLAS 115
VI +KH IDGR VEAKKAVPRDDQ VL R++ +H G+ G RT+KIFVGGL S
Sbjct: 72 VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
++TE++FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DSEE+VD VL KTFHELNGKM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191
Query: 176 VEVKRAVPKELSP-GPSRSPLGGY--SYGL--NR--VNSFLNGFTQGYTPNTVGGYGLRM 228
VEVKRAVPKELS P+RSPL GY +YG+ NR NS+ N F GY N +G
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA---- 247
Query: 229 DGRFSPVAGGRSGFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGL-NPYFVGSS 287
GRFSP+ GR+ F+ G G LN + + Y R N YF +S
Sbjct: 248 -GRFSPIGSGRNAFSSFGLGLNQELNLNSNFD---------GNTLGYSRIPGNQYFNSAS 297
Query: 288 -NRYGSPVGYEXXXXXXXXXXXXVTRNLWGN 317
NRY SP+GY R+LWGN
Sbjct: 298 PNRYNSPIGYNRGDSAYNPS----NRDLWGN 324
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 402 SYSASNGGVDGAFSDFYNNNSVYGDPTWRSS------NSERDG-SGPFGYGLGGAASDVS 454
S++ + G DG+ + Y +SVY D TW+ S ++E DG S +G+G+ SD S
Sbjct: 372 SFAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPS 431
Query: 455 AKSSPGYVGGYTVNKRQPNRGIAA 478
A +S GY G Y V RQ +RGI A
Sbjct: 432 ANASEGYSGNYNVGNRQTHRGIEA 455
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 335 bits (858), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 197/335 (58%), Positives = 232/335 (69%), Gaps = 35/335 (10%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT EERLR+YFS YG+VVEAVIM+DR TGRARGFGF+VF+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH-GSP---GPGRTRKIFVGGLAST 116
+ VI +KH IDGR VEAKKAVPRDDQ VL R++ IH SP G GRT+KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPGPS-RSPLG---GYSYGLNRV--NSFLNGFTQGYTP---NTVGGYGLR 227
EVKRAVPKE+SP + RSPL Y G NR+ NS+ N F G P N++G G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPG--PGFYNSLGPVGR- 237
Query: 228 MDGRFSPVAG-GRSGFAPLGSG--YGMNLNFEPGLTXXXXXXXXXXSNVSYGR-GLNPYF 283
RFSPV G GR+ + G G + ++LN P S Y R NPYF
Sbjct: 238 ---RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCD-------GTSSTFGYNRIPSNPYF 287
Query: 284 VGSS-NRYGSPVGYEXXXXXXXXXXXXVTRNLWGN 317
G+S NRY SP+G+ R+LWGN
Sbjct: 288 NGASPNRYTSPIGHNRTESPYNSN----NRDLWGN 318
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 335 bits (858), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 197/335 (58%), Positives = 232/335 (69%), Gaps = 35/335 (10%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT EERLR+YFS YG+VVEAVIM+DR TGRARGFGF+VF+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH-GSP---GPGRTRKIFVGGLAST 116
+ VI +KH IDGR VEAKKAVPRDDQ VL R++ IH SP G GRT+KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPGPS-RSPLG---GYSYGLNRV--NSFLNGFTQGYTP---NTVGGYGLR 227
EVKRAVPKE+SP + RSPL Y G NR+ NS+ N F G P N++G G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPG--PGFYNSLGPVGR- 237
Query: 228 MDGRFSPVAG-GRSGFAPLGSG--YGMNLNFEPGLTXXXXXXXXXXSNVSYGR-GLNPYF 283
RFSPV G GR+ + G G + ++LN P S Y R NPYF
Sbjct: 238 ---RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCD-------GTSSTFGYNRIPSNPYF 287
Query: 284 VGSS-NRYGSPVGYEXXXXXXXXXXXXVTRNLWGN 317
G+S NRY SP+G+ R+LWGN
Sbjct: 288 NGASPNRYTSPIGHNRTESPYNSN----NRDLWGN 318
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 335 bits (858), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 197/335 (58%), Positives = 232/335 (69%), Gaps = 35/335 (10%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT EERLR+YFS YG+VVEAVIM+DR TGRARGFGF+VF+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH-GSP---GPGRTRKIFVGGLAST 116
+ VI +KH IDGR VEAKKAVPRDDQ VL R++ IH SP G GRT+KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPGPS-RSPLG---GYSYGLNRV--NSFLNGFTQGYTP---NTVGGYGLR 227
EVKRAVPKE+SP + RSPL Y G NR+ NS+ N F G P N++G G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPG--PGFYNSLGPVGR- 237
Query: 228 MDGRFSPVAG-GRSGFAPLGSG--YGMNLNFEPGLTXXXXXXXXXXSNVSYGR-GLNPYF 283
RFSPV G GR+ + G G + ++LN P S Y R NPYF
Sbjct: 238 ---RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCD-------GTSSTFGYNRIPSNPYF 287
Query: 284 VGSS-NRYGSPVGYEXXXXXXXXXXXXVTRNLWGN 317
G+S NRY SP+G+ R+LWGN
Sbjct: 288 NGASPNRYTSPIGHNRTESPYNSN----NRDLWGN 318
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 335 bits (858), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 197/335 (58%), Positives = 232/335 (69%), Gaps = 35/335 (10%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT EERLR+YFS YG+VVEAVIM+DR TGRARGFGF+VF+DP V+
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH-GSP---GPGRTRKIFVGGLAST 116
+ VI +KH IDGR VEAKKAVPRDDQ VL R++ IH SP G GRT+KIFVGGL S+
Sbjct: 61 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSS 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+TE +FK YFDQFGTI DVVVMYDHNTQRPRGFGFIT+DS++AVD+VL KTFHELNGK+V
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLV 180
Query: 177 EVKRAVPKELSPGPS-RSPLG---GYSYGLNRV--NSFLNGFTQGYTP---NTVGGYGLR 227
EVKRAVPKE+SP + RSPL Y G NR+ NS+ N F G P N++G G
Sbjct: 181 EVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYFNNFAPG--PGFYNSLGPVGR- 237
Query: 228 MDGRFSPVAG-GRSGFAPLGSG--YGMNLNFEPGLTXXXXXXXXXXSNVSYGR-GLNPYF 283
RFSPV G GR+ + G G + ++LN P S Y R NPYF
Sbjct: 238 ---RFSPVIGSGRNAVSAFGLGLNHDLSLNLNPSCD-------GTSSTFGYNRIPSNPYF 287
Query: 284 VGSS-NRYGSPVGYEXXXXXXXXXXXXVTRNLWGN 317
G+S NRY SP+G+ R+LWGN
Sbjct: 288 NGASPNRYTSPIGHNRTESPYNSN----NRDLWGN 318
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 268 bits (684), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 138/267 (51%), Positives = 181/267 (67%), Gaps = 6/267 (2%)
Query: 62 IVIKEKHNID-GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+++KE ++ MVEAKKAVPRDD V ++++ S+ GSPGP ++KIFVGGLAS+VTE+
Sbjct: 1 MLLKESSCLNISLMVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 60
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+FKKYF QFG ITDVVVMYDH TQRPRGFGFI+YDSEEAVDKVL KTFHELNGKMVEVK
Sbjct: 61 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 120
Query: 181 AVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRS 240
AVPK+++ R+ + S+G +R++S LN +TQG++P+ + GYG++ + R+SP G R
Sbjct: 121 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 180
Query: 241 GFAPLGSGYGMNLNFEPGLTXXXXXXXXXXSNVSYGRGLNPYFVGSSNRYGSPVGYEXXX 300
GF+P G GYG+ LNFEP T R +P + S R+GS +
Sbjct: 181 GFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG----RPFSPGYAASLGRFGSQMESGGAS 236
Query: 301 XXXXXXXXXVTRN-LWGNGGLNYGTSS 326
+N LWGNGGL Y ++S
Sbjct: 237 VGNGSVLNAAPKNHLWGNGGLGYMSNS 263
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF-SDPAVAD 61
S++ K+F+GG++ TE ++YF+ +G + + V+M D T R RGFGF+ + S+ AV
Sbjct: 43 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 102
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH 97
++ K H ++G+MVE K AVP+D RN +++
Sbjct: 103 VLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVN 138
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 108/192 (56%), Positives = 150/192 (78%), Gaps = 4/192 (2%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M SD GKLF+GGISW+T E++LRE+F+ YGEV +A++M+D+ TGR RGFGFV+FSDP+V
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSR----NSGSIHGSPGPGRTRKIFVGGLAST 116
D V++EKH+ID R V+ K+A+ R++Q V R N+ G +T+KIFVGGL T
Sbjct: 61 DRVLQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPT 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+T+ +F++YF+ +G +TDV +MYD T RPRGFGF+++DSE+AVD VL KTFH+L+GK V
Sbjct: 121 LTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQV 180
Query: 177 EVKRAVPKELSP 188
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 231 bits (589), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 144/192 (75%), Gaps = 4/192 (2%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M+SD GKLFIGGISWDT E LREYFS +GEV++ +M+++ TGR RGFGFV FSDPAV
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSR----NSGSIHGSPGPGRTRKIFVGGLAST 116
D V+++KH+ID R V+ K+A+ R++Q+ R N+ S RT+KIFVGGL
Sbjct: 61 DRVLQDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPA 120
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+T +F+ YF+ +G ++D V+M D TQRPRGFGF+++DSE++VD VL KTFH+LNGK V
Sbjct: 121 LTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQV 180
Query: 177 EVKRAVPKELSP 188
EVKRA+PK+ +P
Sbjct: 181 EVKRALPKDANP 192
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/199 (48%), Positives = 133/199 (66%), Gaps = 14/199 (7%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
M D KLF+GGI+ +T+EE L++YFS YG V+EAV+ K++ TG+ RGFGFV F++
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDD-------QTVLSRNSGSIHG------SPG-PGRTR 106
+++ H I G+ V+ +KA+ + + L R ++G S G RT+
Sbjct: 61 VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
KIFVGGL+S TE +FK YF++FG TDVVVM+D T RPRGFGF+TYDSE++V+ V+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Query: 167 TFHELNGKMVEVKRAVPKE 185
FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 87/180 (48%), Positives = 117/180 (65%), Gaps = 10/180 (5%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
GKLF+GG+SW+TT E YF +GEVV++VIM DR TG RGFGFV F+D AVA+ V++
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE 125
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
E H ID R V+ K+ +PR D+ + +TRKIFVGGL + E + K Y
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIK---------AVSKTRKIFVGGLPPLLEEDELKNY 176
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVKRAVPK 184
F +G I + +MYDH+T R RGFGF+T+ +E++VD++ HEL K VE+KRA PK
Sbjct: 177 FCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPK 236
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 119/181 (65%), Gaps = 11/181 (6%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
GK+FIGG+ DTT ++F YGE+ ++VIM+DR TG+ RGFGF+ F+DP+V D VI+
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ H I+G+ VE K+ +P+ S++ +T+KIFVGG+ STVTE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPKGAGGNQSKDI----------KTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVKRAVPK 184
F ++G + + V+ DH T R RGFGF+ +DSEE VD++L K ++ VE+K+A PK
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPK 188
Query: 185 E 185
+
Sbjct: 189 K 189
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 123/181 (67%), Gaps = 13/181 (7%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
GK+F+GG++ +TT ++F YGE+ ++VIMKDR TG+ RGFGFV ++D +V D VI+
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ H I G+ VE K+ +PR GS+ S +T+KIFVGG+ S+V + +FK++
Sbjct: 102 DNHIIIGKQVEIKRTIPR----------GSM--SSNDFKTKKIFVGGIPSSVDDDEFKEF 149
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVEVKRAVPK 184
F QFG + + +M DH+T R RGFGF+TY+SE+ VD +L K EL+G VE+K+A PK
Sbjct: 150 FMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK 209
Query: 185 E 185
+
Sbjct: 210 K 210
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 107/161 (66%), Gaps = 10/161 (6%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
GK+FIGG+ DTT ++F YGE+ ++VIM+DR TG+ RGFGF+ F+DP+V D VI+
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ H I+G+ VE K+ +P+ G+ +T+KIFVGG+ STVTE + K +
Sbjct: 79 DTHVINGKQVEIKRTIPK----------GAGGNQSKDIKTKKIFVGGIPSTVTEDELKDF 128
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
F ++G + + V+ DH T R RGFGF+ +DSEE VD++L K
Sbjct: 129 FAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 57/87 (65%), Gaps = 6/87 (6%)
Query: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
SPG KIF+GGL T + F K+F ++G ITD V+M D +T +PRGFGFIT+
Sbjct: 16 ASPG-----KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP 70
Query: 158 EAVDKVLLKTFHELNGKMVEVKRAVPK 184
VDKV+ T H +NGK VE+KR +PK
Sbjct: 71 SVVDKVIEDT-HVINGKQVEIKRTIPK 96
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GGI TE+ L+++F+ YG VVE +++D T R+RGFGFV+F V D ++ +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 67 KHNID 71
+ ID
Sbjct: 170 GNMID 174
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 117/193 (60%), Gaps = 13/193 (6%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KL + GI WD + L++Y S +G++ + ++MKDR+TGR+RGFG+V F+ A +K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
+H + R++E K A P+++ ++ + +IFV + S+V+ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAK------------KVTRIFVARIPSSVSESDFRSHF 111
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
+++G ITD+ + D+N+++ RG GFIT+ S ++V+ ++ T H+L G V V RA PKE
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKED 170
Query: 187 SPGPSRSPLGGYS 199
P P+ S
Sbjct: 171 DHPPRPPPVARMS 183
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 51/234 (21%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+ I +E R +F YGE+ + + KD + + RG GF+ FS + ++++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHNIDGRMVEAKKAVPRDDQ---------------------------------------- 86
H++ G V +A P++D
Sbjct: 152 THDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATR 211
Query: 87 ------TVLSRNSGSIHGSPGP---GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVV 137
L N + +G P G KIFVG L + D + YF +FG I D +
Sbjct: 212 YAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 271
Query: 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
D RGFGF+T+ D+V ++ HE+ G+ V + A P + + GPS
Sbjct: 272 PKDPKRSGHRGFGFVTFAENGVADRVARRS-HEICGQEVAIDSATPLDEA-GPS 323
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
RK+ V G+ + K Y +FG + D +VM D +T R RGFG++T+ S E K L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNAL 61
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSR 192
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 117/193 (60%), Gaps = 13/193 (6%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KL + GI WD + L++Y S +G++ + ++MKDR+TGR+RGFG+V F+ A +K
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
+H + R++E K A P+++ ++ + +IFV + S+V+ESDF+ +F
Sbjct: 64 EHFLGNRILEVKVATPKEEMRQPAK------------KVTRIFVARIPSSVSESDFRSHF 111
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
+++G ITD+ + D+N+++ RG GFIT+ S ++V+ ++ T H+L G V V RA PKE
Sbjct: 112 ERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPKED 170
Query: 187 SPGPSRSPLGGYS 199
P P+ S
Sbjct: 171 DHPPRPPPVARMS 183
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 51/234 (21%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+ I +E R +F YGE+ + + KD + + RG GF+ FS + ++++
Sbjct: 92 RIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMED 151
Query: 67 KHNIDGRMVEAKKAVPRDDQ---------------------------------------- 86
H++ G V +A P++D
Sbjct: 152 THDLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATR 211
Query: 87 ------TVLSRNSGSIHGSPGP---GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVV 137
L N + +G P G KIFVG L + D + YF +FG I D +
Sbjct: 212 YAALGAPTLYDNPATFYGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 271
Query: 138 MYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPS 191
D RGFGF+T+ D+V ++ HE+ G+ V + A P + + GPS
Sbjct: 272 PKDPKRSGHRGFGFVTFAENGVADRVARRS-HEICGQEVAIDSATPLDEA-GPS 323
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
RK+ V G+ + K Y +FG + D +VM D +T R RGFG++T+ S E K L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDA-KNAL 61
Query: 166 KTFHELNGKMVEVKRAVPKELSPGPSR 192
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S KLF+G + TEE +R YF +G V+E ++KD+ TG+ +G FV ++ AD
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG-RTR------KIFVGGLA 114
I+ HN Q L +G + G R R K+FVG L
Sbjct: 176 RAIRALHN----------------QITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLN 219
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-----LKTFH 169
TE + ++ F QFG + DV +M D Q RG GF+ Y S+E + T
Sbjct: 220 KQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMR 278
Query: 170 ELNGKMVEVKRAVPKELSPGPSR 192
N ++ V+ A PK PG SR
Sbjct: 279 GCNQPLI-VRFAEPKRPKPGESR 300
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 30/202 (14%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S KLF+G + TEE +R YF +G V+E ++KD+ TG+ +G FV ++ AD
Sbjct: 42 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 101
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG-RTR------KIFVGGLAS 115
I+ HN Q L +G + G R R K+FVG L
Sbjct: 102 AIRALHN----------------QITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNK 145
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-----LKTFHE 170
TE + ++ F QFG + DV +M D Q RG GF+ Y S+E + T
Sbjct: 146 QATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRG 204
Query: 171 LNGKMVEVKRAVPKELSPGPSR 192
N ++ V+ A PK PG SR
Sbjct: 205 CNQPLI-VRFAEPKRPKPGESR 225
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 93/203 (45%), Gaps = 30/203 (14%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S KLF+G + TEE +R YF +G V+E ++KD+ TG+ +G FV ++ AD
Sbjct: 116 RSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPG-RTR------KIFVGGLA 114
I+ HN Q L +G + G R R K+FVG L
Sbjct: 176 RAIRALHN----------------QITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLN 219
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL-----LKTFH 169
TE + ++ F QFG + DV +M D Q RG GF+ Y S+E + T
Sbjct: 220 KQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMR 278
Query: 170 ELNGKMVEVKRAVPKELSPGPSR 192
N ++ V+ A PK PG SR
Sbjct: 279 GCNQPLI-VRFAEPKRPKPGESR 300
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFI G++ DTT E LR FS+YG++ EA+++ D+ TG+++G+GFV F A + +KE
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
IDGR+ + A + T S+ RKI+V + + +
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISM---------RKIYVANVPFDMPADRLLNH 186
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
F +G + + + +D T + RGF Y + E L ++GK + K AV
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 10/177 (5%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFI G++ DTT E LR FS+YG++ EA+++ D+ TG+++G+GFV F A + +KE
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
IDGR+ + A + T S+ RKI+V + + +
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISM---------RKIYVANVPFDMPADRLLNH 186
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
F +G + + + +D T + RGF Y + E L ++GK + K AV
Sbjct: 187 FMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT2G41060.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 121/268 (45%), Gaps = 37/268 (13%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT + L + F YGE+ + + D+ +G+++G+GF++F + A +K+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSP--GPGR-------TRKIFVGGLAST 116
+ I RM + A + G + G+P P + RKI+V +++
Sbjct: 189 PQKKIGTRMTACQLA-----------SIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSAD 237
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+ ++F +FG I + + D T RP+GF Y S E+ K L + G ++
Sbjct: 238 IDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVL 297
Query: 177 EVKRAVPKELSPGPSRSPLGGYSYGLNRVNS-FLNGFTQGYTPNTVGGYGLRMDGR---- 231
+A + GP + +++ + NS + GY GG+G + G
Sbjct: 298 HCHKA-----NDGPKQVKQHQHNHNSHNQNSRYQRNDNNGY--GAPGGHGHFIAGNNQAV 350
Query: 232 --FSPVAGG--RSGFAPLGSGYGMNLNF 255
F+P G + A G+G G+N F
Sbjct: 351 QAFNPAIGQALTALLASQGAGLGLNQAF 378
>AT2G41060.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:17127138-17128493 FORWARD LENGTH=451
Length = 451
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 121/268 (45%), Gaps = 37/268 (13%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT + L + F YGE+ + + D+ +G+++G+GF++F + A +K+
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSP--GPGR-------TRKIFVGGLAST 116
+ I RM + A + G + G+P P + RKI+V +++
Sbjct: 189 PQKKIGTRMTACQLA-----------SIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSAD 237
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
+ ++F +FG I + + D T RP+GF Y S E+ K L + G ++
Sbjct: 238 IDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVL 297
Query: 177 EVKRAVPKELSPGPSRSPLGGYSYGLNRVNS-FLNGFTQGYTPNTVGGYGLRMDGR---- 231
+A + GP + +++ + NS + GY GG+G + G
Sbjct: 298 HCHKA-----NDGPKQVKQHQHNHNSHNQNSRYQRNDNNGY--GAPGGHGHFIAGNNQAV 350
Query: 232 --FSPVAGG--RSGFAPLGSGYGMNLNF 255
F+P G + A G+G G+N F
Sbjct: 351 QAFNPAIGQALTALLASQGAGLGLNQAF 378
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD-IVIK 65
K+F+GG++W+T + LR YF +G++VEAV++ D+++GR++G+GFV F DP A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
IDGR A + S+ S IHG VGG VT S FK +
Sbjct: 68 PAPVIDGRRANCNLAAFGVQR---SKPSSPIHGH----------VGGRGMKVT-SPFKTH 113
Query: 126 FDQFGTITDVVVMYDHNT-QRPRGFGFITYDSE 157
F T + + H T FGF +Y +
Sbjct: 114 FGTAATAIPSPLPFSHYTLPYTNPFGFSSYSMD 146
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + + YF+QFG I + VV+ D ++ R +G+GF+T+ EA K +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 68 PAPVIDGRRANCNLA 82
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 78/156 (50%), Gaps = 22/156 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD-IVIK 65
K+F+GG++W+T + LR YF +G++VEAV++ D+++GR++G+GFV F DP A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 66 EKHNIDGRMVEAKKA---VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
IDGR A V R S+ S IHG VGG VT S F
Sbjct: 68 PAPVIDGRRANCNLAAFGVQR------SKPSSPIHGH----------VGGRGMKVT-SPF 110
Query: 123 KKYFDQFGTITDVVVMYDHNT-QRPRGFGFITYDSE 157
K +F T + + H T FGF +Y +
Sbjct: 111 KTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSYSMD 146
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + + YF+QFG I + VV+ D ++ R +G+GF+T+ EA K +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 68 PAPVIDGRRANCNLA 82
>AT3G56860.5 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT E L E F YGE+ + + D+ +G+++G+GF+++ + A +K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 -KHNIDGRMVEAKKA----------VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I RM + A + + +++S S H +KI+V + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH------TQKKIYVSNVGA 254
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+ +F +FG I + + D T RP+GF Y S E+ + L + G +
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 176 VEVKRAV 182
+ ++A+
Sbjct: 315 LHCQKAI 321
>AT3G56860.4 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT E L E F YGE+ + + D+ +G+++G+GF+++ + A +K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 -KHNIDGRMVEAKKA----------VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I RM + A + + +++S S H +KI+V + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH------TQKKIYVSNVGA 254
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+ +F +FG I + + D T RP+GF Y S E+ + L + G +
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 176 VEVKRAV 182
+ ++A+
Sbjct: 315 LHCQKAI 321
>AT3G56860.2 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT E L E F YGE+ + + D+ +G+++G+GF+++ + A +K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 -KHNIDGRMVEAKKA----------VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I RM + A + + +++S S H +KI+V + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH------TQKKIYVSNVGA 254
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+ +F +FG I + + D T RP+GF Y S E+ + L + G +
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 176 VEVKRAV 182
+ ++A+
Sbjct: 315 LHCQKAI 321
>AT3G56860.1 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT E L E F YGE+ + + D+ +G+++G+GF+++ + A +K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 -KHNIDGRMVEAKKA----------VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I RM + A + + +++S S H +KI+V + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH------TQKKIYVSNVGA 254
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+ +F +FG I + + D T RP+GF Y S E+ + L + G +
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 176 VEVKRAV 182
+ ++A+
Sbjct: 315 LHCQKAI 321
>AT3G56860.3 | Symbols: UBA2A | UBP1-associated protein 2A |
chr3:21050708-21052144 REVERSE LENGTH=478
Length = 478
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ WDT E L E F YGE+ + + D+ +G+++G+GF+++ + A +K+
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 67 -KHNIDGRMVEAKKA----------VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I RM + A + + +++S S H +KI+V + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEH------TQKKIYVSNVGA 254
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKM 175
+ +F +FG I + + D T RP+GF Y S E+ + L + G +
Sbjct: 255 ELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHI 314
Query: 176 VEVKRAV 182
+ ++A+
Sbjct: 315 LHCQKAI 321
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T E LR++F YGE++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 67 KHN-IDGRMVEAKKA 80
IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA +++F+Q+G I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S+ KLF+G +++D + L F G V A ++ +R T ++RGFGFV S A+
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 63 VIKE--KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR------KIFVGGLA 114
+++ +++++GR++ KA PR GS R +++VG L
Sbjct: 207 AVEKFNRYDLNGRLLTVNKAAPR--------------GSRPERAPRVYEPAFRVYVGNLP 252
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLLKTFHELNG 173
V ++ F + G + + V+YD T R RGFGF+T D +E + + L G
Sbjct: 253 WDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEG 312
Query: 174 KMVEVKRA 181
+ + V A
Sbjct: 313 RAIRVNVA 320
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
++++G + WD RL + FS +G+VVEA ++ DR TGR+RGFGFV SD + I
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 66 -EKHNIDGRMVEAKKAVPR 83
+ N++GR + A R
Sbjct: 305 LDGQNLEGRAIRVNVAEER 323
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)
Query: 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
P P K+FVG LA V F+Q GT+ V+Y+ T + RGFGF+T S +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 160 VDKVLLK-TFHELNGKMVEVKRAVPKELSPGPSRSP 194
+ + K ++LNG+++ V +A P+ P R+P
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPR--GSRPERAP 237
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA-DIVIK 65
K+F+GG++W+T E LR +F YG+++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA +++FDQ+G I + VV+ D NT R +G+GF+T+ EA + +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPL 195
++G+ A S G SR P+
Sbjct: 85 PTPIIDGRRANCNLA-----SLGRSRPPM 108
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA-DIVIK 65
K+F+GG++W+T E LR +F YG+++EAV++ D+ TGR++G+GFV F DP A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA +++FDQ+G I + VV+ D NT R +G+GF+T+ EA + +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 167 TFHELNGKMVEVKRAVPKELSPGPSRSPL 195
++G+ A S G SR P+
Sbjct: 85 PTPIIDGRRANCNLA-----SLGRSRPPM 108
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+GG+SW T + L++ F+++GEV EA ++ DR TGR+RGFGFV FS A+ IKE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 67 K--HNIDGRMVEAKKAVPR 83
++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGL+ +S K+ F FG +T+ V+ D T R RGFGF+++ E++ + + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 167 TF-HELNGKMVEVKRAVPKELSPGPS 191
ELNG+ + V A + +P S
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSS 121
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+GG+SW T + L++ F+++GEV EA ++ DR TGR+RGFGFV FS A+ IKE
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 67 K--HNIDGRMVEAKKAVPR 83
++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGL+ +S K+ F FG +T+ V+ D T R RGFGF+++ E++ + + +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 167 TF-HELNGKMVEVKRAVPKELSPGPS 191
ELNG+ + V A + +P S
Sbjct: 96 MDGKELNGRQIRVNLATERSSAPRSS 121
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPA----VADIV 63
L++ + D +E+ LRE F+ +G++V I KD RG+ FV F +P A+ V
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 64 IKEKHNIDGRMV-EAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
K V A+K R+ Q + + + I+V + VTE +
Sbjct: 262 NGTKFGSKCLYVGRAQKKAERE-QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEEL 320
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTFH--ELNGKMVEVK 179
+K+F Q GTIT +M D + +GFGF+ + + EEA+D V KTFH +GK + V
Sbjct: 321 RKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAV--KTFHGQMFHGKPLYVA 377
Query: 180 RAVPKE 185
A KE
Sbjct: 378 IAQKKE 383
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 75/154 (48%), Gaps = 17/154 (11%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++G + TE L + F+ + + + KD ++GR+ +G+ F A++ I++K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 68 HN--IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+N ++G+M+ +V D +R +G +FV L +VT + +
Sbjct: 86 NNSLLNGKMIRVMWSVRAPD----ARRNG----------VGNVFVKNLPESVTNAVLQDM 131
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
F +FG I V + + RG+GF+ ++ E+A
Sbjct: 132 FKKFGNIVSCKVATLEDG-KSRGYGFVQFEQEDA 164
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 21/202 (10%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVAD 61
+ G+L++G + + T L + F G VV+ I+ D+ T R+RGFGFV + A
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 62 IVIKEKHNIDGRMVEAK-KAVPRDDQTVLSR-----NSGSIHGSPGPGRTRKIFVGGLAS 115
+ + I GR V+ VPR + + R N+ S SP K++ G L
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSP-----HKVYAGNLGW 228
Query: 116 TVTESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--ELN 172
+T K F DQ G + V+Y+ NT R RGFGFI+++S E V L T + E+
Sbjct: 229 NLTSQGLKDAFGDQPGVL-GAKVIYERNTGRSRGFGFISFESAENVQSA-LATMNGVEVE 286
Query: 173 GKMVEVKRAVPKELSPGPSRSP 194
G+ + + A +E P+ SP
Sbjct: 287 GRALRLNLASERE---KPTVSP 305
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVD 161
G +++VG L T+T S+ + F + GT+ DV ++YD T R RGFGF+T S EEA +
Sbjct: 113 GEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKE 172
Query: 162 KVLLKTFHELNGKMVEV 178
+ + ++ G+ V+V
Sbjct: 173 AMQMFNSSQIGGRTVKV 189
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 88/183 (48%), Gaps = 25/183 (13%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ D EE LR+ GE+ E +MKDR +G ++G+ FV F VA I+E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
H+ + + + + S S+ + ++F+G + TE +F+K
Sbjct: 177 LHSKEFKA------------SSTANCSLSL--------SNRLFIGNIPKNWTEDEFRKVI 216
Query: 127 DQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD---KVLLKTFHELNGKMVEVKRA 181
+ G + ++ ++ D NT R RGF F+ Y + D + ++ + +L G V A
Sbjct: 217 EDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWA 276
Query: 182 VPK 184
PK
Sbjct: 277 DPK 279
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 24/249 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAV-IMKDRT-TGRARGFGFVVFSDPAVADI-- 62
+LFIG I + TE+ R+ G VE + ++KD T T R RGF FV++ + A AD
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 63 --VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+I ++G A P+ S S + + ++V + +
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPK----------SSPEHSAAAAQVKALYVKNIPENTSTE 306
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVK 179
K+ F + G +T +V + R FGF+ Y + K + T +E+NG+ +EV
Sbjct: 307 QLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVV 364
Query: 180 RAVPK-ELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFS-PVAG 237
A P+ E PS G V+ GF P G GL + G FS P+
Sbjct: 365 LAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAA--PYGAMGAGLGIAGSFSQPMIY 422
Query: 238 GRSGFAPLG 246
GR G P G
Sbjct: 423 GR-GAMPTG 430
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 29/185 (15%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ D EE LR+ GE+ E +MKDR +G ++G+ FV F VA I+E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
H+ + G+ + + LS ++F+G + TE +F+K
Sbjct: 177 LHSKEFKGKTI----------RCSLSETKN------------RLFIGNIPKNWTEDEFRK 214
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD---KVLLKTFHELNGKMVEVK 179
+ G + ++ ++ D NT R RGF F+ Y + D + ++ + +L G V
Sbjct: 215 VIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVT 274
Query: 180 RAVPK 184
A PK
Sbjct: 275 WADPK 279
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 24/249 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAV-IMKDRT-TGRARGFGFVVFSDPAVADI-- 62
+LFIG I + TE+ R+ G VE + ++KD T T R RGF FV++ + A AD
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 63 --VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+I ++G A P+ S S + + ++V + +
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPK----------SSPEHSAAAAQVKALYVKNIPENTSTE 306
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVK 179
K+ F + G +T +V + R FGF+ Y + K + T +E+NG+ +EV
Sbjct: 307 QLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVV 364
Query: 180 RAVPK-ELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFS-PVAG 237
A P+ E PS G V+ GF P G GL + G FS P+
Sbjct: 365 LAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAA--PYGAMGAGLGIAGSFSQPMIY 422
Query: 238 GRSGFAPLG 246
GR G P G
Sbjct: 423 GR-GAMPTG 430
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 29/185 (15%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ D EE LR+ GE+ E +MKDR +G ++G+ FV F VA I+E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
H+ + G+ + + LS ++F+G + TE +F+K
Sbjct: 177 LHSKEFKGKTI----------RCSLSETKN------------RLFIGNIPKNWTEDEFRK 214
Query: 125 YFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYDSEEAVD---KVLLKTFHELNGKMVEVK 179
+ G + ++ ++ D NT R RGF F+ Y + D + ++ + +L G V
Sbjct: 215 VIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVT 274
Query: 180 RAVPK 184
A PK
Sbjct: 275 WADPK 279
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 24/249 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAV-IMKDRT-TGRARGFGFVVFSDPAVADI-- 62
+LFIG I + TE+ R+ G VE + ++KD T T R RGF FV++ + A AD
Sbjct: 197 RLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSR 256
Query: 63 --VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+I ++G A P+ S S + + ++V + +
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPK----------SSPEHSAAAAQVKALYVKNIPENTSTE 306
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVK 179
K+ F + G +T +V + R FGF+ Y + K + T +E+NG+ +EV
Sbjct: 307 QLKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVV 364
Query: 180 RAVPK-ELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFS-PVAG 237
A P+ E PS G V+ GF P G GL + G FS P+
Sbjct: 365 LAKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAA--PYGAMGAGLGIAGSFSQPMIY 422
Query: 238 GRSGFAPLG 246
GR G P G
Sbjct: 423 GR-GAMPTG 430
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 7/97 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+S + T+ L FS +G++++ IM +R TGR+RGFGF+ F+D D I+E
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPG 101
H D R++ +A P+ L R+ G HGS G
Sbjct: 68 MHGRDFGDRVISVNRAEPK-----LGRDDGESHGSRG 99
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+IFVGGL+ VT+ D ++ F +FG I D +M + +T R RGFGFIT+ A+D+ + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 167 TF-HELNGKMVEVKRAVPK 184
+ +++ V RA PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + +R YF +GE+VEAV++ D+ TGR++G+GFV F + A+ ++
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE---AEAAMRA 79
Query: 67 KHN----IDGRMVEAKKAV 81
N IDGR A
Sbjct: 80 CQNMNPVIDGRRANCNLAC 98
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
+ KIFVGGLA ++YF+QFG I + VV+ D NT R +G+GF+T+ EA +
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 164 LLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGG 197
++G+ A P P SP G
Sbjct: 80 CQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHG 113
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 16/190 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G + ++ +L + F + G V ++ D+ TGR+RGFGFV S + + ++
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 67 --KHNIDGRMVEAKKAVP---RDD--------QTVLSRNSGSIHGSPGPGRTRKIFVGGL 113
+ +DGR + P R+D S + G G G +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 114 ASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH--EL 171
+ V + + F + G + + V+YD ++ R +GFGF+TYDS + V +K+ +L
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA-IKSLDGADL 270
Query: 172 NGKMVEVKRA 181
+G+ + V A
Sbjct: 271 DGRQIRVSEA 280
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+SWD TE +L F YG++ E IM R TGR RGFGF+ F+D AD IK
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--NIDGRMVEAKKAVPR 83
H + +++ KA P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+IFVGGL+ VTE + FD++G IT+ +M +T RPRGFGFIT+ D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA-IK 71
Query: 167 TFH--ELNGKMVEVKRAVPK 184
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+SWD TE +L F YG++ E IM R TGR RGFGF+ F+D AD IK
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 67 KH--NIDGRMVEAKKAVPR 83
H + +++ KA P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+IFVGGL+ VTE + FD++G IT+ +M +T RPRGFGFIT+ D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA-IK 71
Query: 167 TFH--ELNGKMVEVKRAVPK 184
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + +R YF +GE++EAVI+ D+ TG+++G+GFV F D A + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 67 KHN-IDGRMVEAKKA 80
+ IDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + ++YFDQFG I + V++ D T + +G+GF+T+ ++ + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 78 PNPVIDGRKANCNIA 92
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 13/175 (7%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ + T+ L+ F +GE+ AV+MKD G++R FGFV F + A A + EK
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNF-EKAEAAVTAIEK 178
Query: 68 HN---IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRK---IFVGGLASTVTESD 121
N +D + + +A + ++T + + +TRK ++V L +V +
Sbjct: 179 MNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTK 238
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
++ F +FGTIT VM H+ +G GF+ + + E K +LK +NGKMV
Sbjct: 239 LEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLK----MNGKMV 288
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 33/185 (17%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S G +F+ + ++L + FSA+G+V+ + +D +G ++G+GFV F +D+
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQF----YSDL 82
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR--------KIFVGGLA 114
+ N L RN IH P R + ++V L
Sbjct: 83 SVYTACNFHN--------------GTLIRNQ-HIHVCPFVSRGQWDKSRVFTNVYVKNLV 127
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
T T++D K+ F +FG IT VVM D + R FGF+ ++ EA + ++NG
Sbjct: 128 ETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAA----VTAIEKMNGV 182
Query: 175 MVEVK 179
+V+ K
Sbjct: 183 VVDEK 187
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++IG I T E+L + +G V + +M D+ +GR+R FGF A+ V+ E
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV-E 135
Query: 67 KHN---IDGRMVEA----KKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
K N ++GR ++ K D +VL + SP K++VG LA TVT+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSP-----YKVYVGNLAKTVTK 190
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHE-LNGKMVEV 178
+ F + G + V T + GFGF+T+ SEE V+ ++ + L G+ + V
Sbjct: 191 EMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Query: 179 KRA 181
+A
Sbjct: 251 NKA 253
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
P R++++G + TVT K ++ G + V VMYD + R R FGF T S E
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 160 VDKVLLKTFHELNGKMVE 177
+ V+ K LNG VE
Sbjct: 130 ANAVVEK----LNGNTVE 143
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 14/183 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++IG I T E+L + +G V + +M D+ +GR+R FGF A+ V+ E
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV-E 135
Query: 67 KHN---IDGRMVEA----KKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
K N ++GR ++ K D +VL + SP K++VG LA TVT+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSP-----YKVYVGNLAKTVTK 190
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHE-LNGKMVEV 178
+ F + G + V T + GFGF+T+ SEE V+ ++ + L G+ + V
Sbjct: 191 EMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Query: 179 KRA 181
+A
Sbjct: 251 NKA 253
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 100 PGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
P R++++G + TVT K ++ G + V VMYD + R R FGF T S E
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 160 VDKVLLKTFHELNGKMVE 177
+ V+ K LNG VE
Sbjct: 130 ANAVVEK----LNGNTVE 143
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 60/278 (21%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ + + T++ L++ F YG++ AV+MKD+ +G +R FGFV F P A + +++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 68 HNID-GRMV----EAKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I G V A+K R+ +Q +SR + GS +++ L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFE-KLQGS-------NLYLKNLDD 351
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQ-RPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
+V + K+ F ++G +T VM N+Q RGFGF+ Y + E L E+NGK
Sbjct: 352 SVNDEKLKEMFSEYGNVTSCKVMM--NSQGLSRGFGFVAYSNPEEA----LLAMKEMNGK 405
Query: 175 MV-------------EVKRAVPKEL-----SPG---PSRSPLGGYSYGL-------NRVN 206
M+ E ++A + L SPG P SP+ G+ +
Sbjct: 406 MIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHP 465
Query: 207 SFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRSGFAP 244
F+ QG P+ GYG ++ +F P G R G P
Sbjct: 466 MFIGHNGQGLVPSQPMGYGYQV--QFMP--GMRPGAGP 499
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S G +FI + + L E FS++G ++ + D GR++G+GFV F A
Sbjct: 143 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQA 201
Query: 63 VIKEKHNIDGRMVEAKKA-----VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTV 117
I + ++G ++ K+ V R D+ SG++ P T ++V L +
Sbjct: 202 AIDK---LNGMLLNDKQVFVGHFVRRQDRA--RSESGAV-----PSFT-NVYVKNLPKEI 250
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
T+ + KK F ++G I+ VVM D + R FGF+ + S EA
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEA 291
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 60/278 (21%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ + + T++ L++ F YG++ AV+MKD+ +G +R FGFV F P A + +++
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 68 HNID-GRMV----EAKKAVPRD-------DQTVLSRNSGSIHGSPGPGRTRKIFVGGLAS 115
+ I G V A+K R+ +Q +SR + GS +++ L
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFE-KLQGS-------NLYLKNLDD 351
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQ-RPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
+V + K+ F ++G +T VM N+Q RGFGF+ Y + E L E+NGK
Sbjct: 352 SVNDEKLKEMFSEYGNVTSCKVMM--NSQGLSRGFGFVAYSNPEEA----LLAMKEMNGK 405
Query: 175 MV-------------EVKRAVPKEL-----SPG---PSRSPLGGYSYGL-------NRVN 206
M+ E ++A + L SPG P SP+ G+ +
Sbjct: 406 MIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHP 465
Query: 207 SFLNGFTQGYTPNTVGGYGLRMDGRFSPVAGGRSGFAP 244
F+ QG P+ GYG ++ +F P G R G P
Sbjct: 466 MFIGHNGQGLVPSQPMGYGYQV--QFMP--GMRPGAGP 499
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 18/162 (11%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S G +FI + + L E FS++G ++ + D GR++G+GFV F A
Sbjct: 143 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQA 201
Query: 63 VIKEKHNIDGRMVEAKKA-----VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTV 117
I + ++G ++ K+ V R D+ SG++ P T ++V L +
Sbjct: 202 AIDK---LNGMLLNDKQVFVGHFVRRQDRA--RSESGAV-----PSFT-NVYVKNLPKEI 250
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
T+ + KK F ++G I+ VVM D + R FGF+ + S EA
Sbjct: 251 TDDELKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEA 291
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
KLFIGG+++ E+ LRE F+ YGEVV+ ++ DR TGR+RGFGFV F+ A I+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 66 -EKHNIDGRMVEAKKAVPR 83
+ ++ GR+V+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 105 TRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
+ K+F+GG+A ++ E ++ F ++G + D V+ D T R RGFGF+T+ S EA +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 165 LKTF-HELNGKMVEVKRA 181
+L+G++V+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+SW T + LR+ F+ +G+VV+A ++ DR TGR+RGFGFV F+D A I E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 K--HNIDGRMVEAKKAVPR 83
++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 167 TF-HELNGKMVEVKRA 181
ELNG+ + V A
Sbjct: 96 MDGKELNGRHIRVNPA 111
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+SW T + LR+ F+ +G+VV+A ++ DR TGR+RGFGFV F+D A I E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 K--HNIDGRMVEAKKAVPR 83
++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 167 TF-HELNGKMVEVKRAVPKELSP 188
ELNG+ + V A + +P
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+SW T + LR+ F+ +G+VV+A ++ DR TGR+RGFGFV F+D A I E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 K--HNIDGRMVEAKKAVPR 83
++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 167 TF-HELNGKMVEVKRAVPKELSP 188
ELNG+ + V A + +P
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+SW T + LR+ F+ +G+VV+A ++ DR TGR+RGFGFV F+D A I E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 67 K--HNIDGRMVEAKKAVPR 83
++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+F+GGL+ ++ + F FG + D V+ D T R RGFGF+ ++ E A + +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 167 TF-HELNGKMVEVKRAVPKELSP 188
ELNG+ + V A + +P
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAP 118
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + +R YF +GE++EAVI+ D+ TG+++G+GFV F + A + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 67 KHN-IDGRMVEAKKA 80
+ IDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ ++ + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 33/183 (18%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++FIGG+ D EE LR+ GE+ E +MKDR +G ++G+ FV F VA I+E
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
H+ + G+ + + LS ++F+G + TE +F+K
Sbjct: 157 LHSKEFKGKTI----------RCSLSETKN------------RLFIGNIPKNWTEDEFRK 194
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD---KVLLKTFHELNGKMVEVKRA 181
I DV NT R RGF F+ Y + D + ++ + +L G V A
Sbjct: 195 ------VIEDVGPGDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWA 248
Query: 182 VPK 184
PK
Sbjct: 249 DPK 251
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 103/248 (41%), Gaps = 30/248 (12%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRT-TGRARGFGFVVFSDPAVADI--- 62
+LFIG I + TE+ R +V+E V D T T R RGF FV++ + A AD
Sbjct: 177 RLFIGNIPKNWTEDEFR-------KVIEDVGPGDPTNTTRNRGFAFVLYYNNACADYSRQ 229
Query: 63 -VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
+I ++G A P+ S S + + ++V + +
Sbjct: 230 KMIDSNFKLEGNAPTVTWADPK----------SSPEHSAAAAQVKALYVKNIPENTSTEQ 279
Query: 122 FKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT-FHELNGKMVEVKR 180
K+ F + G +T +V + R FGF+ Y + K + T +E+NG+ +EV
Sbjct: 280 LKELFQRHGEVTKIVTPPGKGGK--RDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVL 337
Query: 181 AVPK-ELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPNTVGGYGLRMDGRFS-PVAGG 238
A P+ E PS G V+ GF P G GL + G FS P+ G
Sbjct: 338 AKPQAERKHDPSSYSYGAAPTPAPFVHPTFGGFAAA--PYGAMGAGLGIAGSFSQPMIYG 395
Query: 239 RSGFAPLG 246
R G P G
Sbjct: 396 R-GAMPTG 402
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L E F A Y V A ++ DRTTGR++G+GFV F+D + I+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ---IRA 231
Query: 67 KHNIDGRMVEAK--KAVPRDDQTVLSRNSGSIHGSPG------PGRTRKIFVGGLASTVT 118
++G+ ++ + P ++ L+ S + G P T IFVG + +VT
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNT-TIFVGAVDQSVT 290
Query: 119 ESDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVL 164
E D K F QFG + V + P G GF+ Y + ++ L
Sbjct: 291 EDDLKSVFGQFGELVHVKI--------PAGKRCGFVQYANRACAEQAL 330
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 15/189 (7%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + E L F GE A +++++ G + G+GF+ F + A A+ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAE---RNL 138
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G + + + R + L +G + GP T +FVG LA VT+ + F
Sbjct: 139 QTYNGAPMPSSEQAFRLNWAQLG--AGERRQAEGPEHT--VFVGDLAPDVTDHMLTETFK 194
Query: 128 Q-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186
+ ++ V+ D T R +G+GF+ + E ++ E+NG+ + P
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESE----QIRAMTEMNGQYCSSR---PMRT 247
Query: 187 SPGPSRSPL 195
P ++ PL
Sbjct: 248 GPAANKKPL 256
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 12/174 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDP-----AVADI 62
+++ +S TT++ L+ F YG + AV+M+D G++R FGFV F +P AV +
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
K+ + + + +A+K R+ + GS G ++V L TVT+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGG-NKFDGLNLYVKNLDDTVTDEKL 344
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
++ F +FGTIT VM D + +G GF+ + + +VL +E+NGKMV
Sbjct: 345 RELFAEFGTITSCKVMRDPSGTS-KGSGFVAFSAASEASRVL----NEMNGKMV 393
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 85/175 (48%), Gaps = 21/175 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++G + ++ T+ +L +YF+ +VV + +D T + G+G+V +S+ A+ +++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 68 H--NIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ ++G+M+ + + S G G +FV L +V +
Sbjct: 108 NYSYLNGKMIR-----------ITYSSRDSSARRSGVG---NLFVKNLDKSVDNKTLHEA 153
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F GTI V DH Q RG+GF+ +D+E++ + K LNGK++ K+
Sbjct: 154 FSGCGTIVSCKVATDHMGQS-RGYGFVQFDTEDSAKNAIEK----LNGKVLNDKQ 203
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain
| chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ FIGG++W T++ LR+ F YG +VEA ++ D+ +GR+RGFGF+ F + D I
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 67 KH--NIDGRMVEAKKAVP 82
+ ++DGR + KA P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
+ F+GGLA T ++ + F+++G + + V+ D + R RGFGFIT+D ++A+D+ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 167 -TFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGLNR 204
+L+G+ + V +A P + G G G +R
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDR 106
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++W+T + +R YF +GE++EAVI+ D+ TG+++G+GFV F + A + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 67 KHN-IDGRMVEAKKA 80
+ IDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
K+FVGGLA + ++YF+QFG I + V++ D NT + +G+GF+T+ ++ + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 86/188 (45%), Gaps = 19/188 (10%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
++ + +++GG+ +EE L E F G VV + KDR T + +GF+ + AD
Sbjct: 21 RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDAD 80
Query: 62 IVIKEKHNI--DGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
IK + I G+ + KA Q S + G+ +F+G L V E
Sbjct: 81 YAIKVLNMIKLHGKPIRVNKA----SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
Query: 120 SDFKKYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK-TFHELNGKMVE 177
F FG I ++ +M D +T RGFGFI+YDS EA D + T L+ + +
Sbjct: 126 KLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQIT 185
Query: 178 VKRAVPKE 185
V A K+
Sbjct: 186 VSYAYKKD 193
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA-DIVIK 65
K+F+GG++W+T +E ++++F +GE++EAV++ D+ +GR++G+GFV F + A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + KK+F+QFG I + VV+ D + R +G+GF+T+ EA +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA-DIVIK 65
K+F+GG++W+T +E ++++F +GE++EAV++ D+ +GR++G+GFV F + A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + KK+F+QFG I + VV+ D + R +G+GF+T+ EA +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ F+GG++W T +E L+ FS +G+V+++ I+ DR +GR+RGFGFV F D I+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--NIDGRMVEAKKAVPR 83
+ +DGR++ +A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 KTFHELNGKMVEVKRAVPK 184
EL+G+++ V A +
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 17/167 (10%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G +S D ++ L E FS Y V A ++ D TGR++G+GFV F D + E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRN----SGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ + R + A PR + +G++ G IFVGGL S+VT+
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKV 163
D K+ F++FG I V + +G GF+ + ++EEA++K+
Sbjct: 319 DLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 359
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSA--YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+N +++G + E L F++ E+V +++++ G + G+GFV F VAD
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
V++E +G + R + S + + G IFVG L+ V+++
Sbjct: 159 KVLRE---FNGTTMPNTDQPFRLNWASFSTGEKRLENN---GPDLSIFVGDLSPDVSDNL 212
Query: 122 FKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+ F +++ ++ V+ D NT R +G+GF+ + E K + E+NG
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT----EMNG 261
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 25/188 (13%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
+ KLF+G + +D + L F G V + ++ +R T ++RGFGFV S A+
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 64 IKEKHN---IDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTR------KIFVGGLA 114
+ EK N ++GR + +A PR GS + R +I+VG L
Sbjct: 171 V-EKFNSFEVNGRRLTVNRAAPR--------------GSRPERQPRVYDAAFRIYVGNLP 215
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173
V ++ F + G + D V+ D T R RGFGF+ +E V+ + L G
Sbjct: 216 WDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEG 275
Query: 174 KMVEVKRA 181
+ ++V A
Sbjct: 276 RAIKVNVA 283
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
++++G + WD RL FS +G+VV+A ++ DR TGR+RGFGFV S+ ++ I
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 66 -EKHNIDGRMVEAKKAVPR 83
+ N++GR ++ A R
Sbjct: 268 LDGQNLEGRAIKVNVAEER 286
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
G P P K+FVG L V F+Q GT+ V+Y+ +T + RGFGF+T +
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 158 EAVDKVLLK-TFHELNGKMVEVKRAVPKELSPGPSRSP 194
E +K + K E+NG+ + V RA P+ P R P
Sbjct: 165 EEAEKAVEKFNSFEVNGRRLTVNRAAPR--GSRPERQP 200
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 92/177 (51%), Gaps = 12/177 (6%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF--SDPAVADIVIK 65
+++ ++ TT++ L+ F YG++ AV+MKD G+++GFGFV F +D A +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 275
Query: 66 EKHNIDGR---MVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
H D + + A+K R+ + + R ++ + ++ ++V L ++++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRV-RYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
K+ F FGT+T VM D N +G GF+ + + E + + +L+GKM+E K
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAM----SQLSGKMIESK 386
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 17/176 (9%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
N L++G + ++ T+ +L + F G VV + +D T R+ G+G+V F++P A I
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
+E + I + D +V +G+ IF+ L ++
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGN------------IFIKNLDESIDHKALHD 142
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F FG I V D + Q +G+GF+ Y +EE+ K + K LNG ++ K+
Sbjct: 143 TFSSFGNIVSCKVAVDSSGQS-KGYGFVQYANEESAQKAIEK----LNGMLLNDKQ 193
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 11/180 (6%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
G +FI + + L + FS++G +V + D ++G+++G+GFV +++ A I+
Sbjct: 124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIE 182
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
+ ++G ++ K+ R+S + + ++V LA + T+ D K
Sbjct: 183 K---LNGMLLNDKQVYVGPFLRRQERDS-----TANKTKFTNVYVKNLAESTTDDDLKNA 234
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYD-SEEAVDKVLLKTFHELNGKMVEVKRAVPK 184
F ++G IT VVM D + +GFGF+ ++ +++A V H+ + K V RA K
Sbjct: 235 FGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D ++ L E FS Y V A ++ D TGR++G+GFV F D + E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 67 KHNID--GRMVEAKKAVPRDDQTVLSRN----SGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ + R + A PR + SG+ S G IFVGGL S+VT+
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY----DSEEAVDKV 163
D K+ F +FG I V + +G GF+ + ++EEA++K+
Sbjct: 321 DLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKL 361
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGE--VVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+N +++G + E L F++ E +V +++++ G + G+GFV F VAD
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
V++E +G + R + S + + GP + IFVG LA V+++
Sbjct: 161 KVLQE---FNGAPMPNTDQPFRLNWASFSTGEKRLENN-GPDLS--IFVGDLAPDVSDAL 214
Query: 122 FKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+ F +++ ++ V+ D NT R +G+GF+ + E K + E+NG
Sbjct: 215 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT----EMNG 263
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA-DIVIK 65
K+F+GG++W+T +E ++++F +GE++EAV++ D+ +GR++G+GFV F + A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 66 EKHNIDGRMVEAKKA 80
IDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K+FVGGLA + KK+F+QFG I + VV+ D + R +G+GF+T+ EA +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 29/178 (16%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S + +F+G +S + T+ L + FS + +A +M D+ TGR+RGFGFV F + A
Sbjct: 141 SSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 200
Query: 63 VIKEKHN--IDGRMVEAKKA----------VPRDDQTVLSRNSGSIH------GSPGPGR 104
I E + + R + A + D ++V+ +GS P
Sbjct: 201 AINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPEN 260
Query: 105 TRK---IFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE 157
+ ++VG LA VT+ D +YF G I +V V QR +GFGF+ Y++
Sbjct: 261 NSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRV------QRDKGFGFVRYNTH 312
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 21/174 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEA-VIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+++G I TE L+E F++ G V + +I KD+++ +GFV + D A + I
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAIL- 114
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
+++GR + + R S H + IFVG L+ VT++ + F
Sbjct: 115 --SLNGRHLFGQPIKVNWAYATGQREDTSSHFN--------IFVGDLSPEVTDATLYQSF 164
Query: 127 DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
F + +D VM+D T R RGFGF+++ +++ + +E+NGK + ++
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWLSSRQ 214
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
K+F+GGIS+ T E LRE FS YGEVV+A I+ DR TGR+RGF FV F+ A ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 66 EKHNIDGRMVEAKKAVP 82
+ ++ GR + A
Sbjct: 95 DGQDLHGRRIRVNYATE 111
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
KIFVGG++ + E ++ F ++G + D ++ D T R RGF F+T+ S E +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 167 TFHELNGKMVEVKRAVP 183
+L+G+ + V A
Sbjct: 95 DGQDLHGRRIRVNYATE 111
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G I +E +L F + V E I+KD+ T +RG F++ AD ++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
HN KK +P + + + + G + K+FVG L V+E++ +
Sbjct: 79 CHN--------KKTLPGANSLLQVKYADGELE-----RLEHKLFVGMLPKNVSEAEVQSL 125
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
F ++GTI D+ ++ Q +G F+ Y+++E + +NGK
Sbjct: 126 FSKYGTIKDLQILRGAQ-QTSKGCAFLKYETKEQA----VSAMESINGK 169
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
D+ +++ + T++ L FS YG V V+M+D GR+RGFGFV F +P A
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAK- 256
Query: 63 VIKEKHNIDGRMVEAK-----KAVPRDDQTVLSRNSGSIHGSPGPG-RTRKIFVGGLAST 116
K ++ G + +K KA+ +D++ + + S + P R ++V L+ +
Sbjct: 257 --KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSES 314
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVD-KVLLKTFHELNGK 174
+ E+ ++ F +G I VM H R +GFGF+ + + EE+ K L F ++GK
Sbjct: 315 MNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLNGFL-VDGK 372
Query: 175 MVEVKRAVPKE 185
+ V+ A KE
Sbjct: 373 PIVVRVAERKE 383
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 21/162 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L++ + T L F +G ++ ++++ G+++GFGFV F A + +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSA---VSAR 168
Query: 68 HNIDGRMVEAKKA-----VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
+ G MV KK + +D++ ++ N S + ++V L TVT+
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTN----------VYVKNLIETVTDDCL 218
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164
F Q+GT++ VVVM D R RGFGF+ + + E K +
Sbjct: 219 HTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAM 259
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 31/200 (15%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
G L++G +S D TE+ L + FS VV + ++ TG++ + ++ F P
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSP-------- 72
Query: 66 EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGP----GRTR----KIFVGGLASTV 117
A A+ R + + L + I S RTR ++V L S++
Sbjct: 73 ---------FSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSI 123
Query: 118 TESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177
T S ++ F FG+I V+ + N Q +GFGF+ +D+E++ + L+G MV
Sbjct: 124 TSSCLERMFCPFGSILSCKVV-EENGQ-SKGFGFVQFDTEQSA----VSARSALHGSMVY 177
Query: 178 VKRAVPKELSPGPSRSPLGG 197
K+ + R+ + G
Sbjct: 178 GKKLFVAKFINKDERAAMAG 197
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ F+GG++W T +E L+ FS +G+V+++ I+ DR +GR+RGFGFV F D I+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--NIDGRMVEAKKA 80
+ +DGR++ +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 KTFHELNGKMVEVKRA 181
EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG++WDT +E + ++F YG+++EAVI+ D+ T R++G+GFV F D A ++
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 67 KHN-IDGRMVEAKKA 80
I+GR A
Sbjct: 78 STPIINGRRANCNLA 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 93 SGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFI 152
S +++G G + K+FVGGLA + +F ++G I + V++ D T+R +G+GF+
Sbjct: 4 SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63
Query: 153 TYDSEEAVDKVLLKTFHELNGKMVEVKRA 181
T+ +A + + +NG+ A
Sbjct: 64 TFKDAKAATRACEDSTPIINGRRANCNLA 92
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ F+GG++W T +E L+ FS +G+V+++ I+ DR +GR+RGFGFV F D I+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 67 KH--NIDGRMVEAKKA 80
+ +DGR++ +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 166 KTFHELNGKMVEVKRA 181
EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 27/187 (14%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYG--EVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
N KL+ G + ++ L + + E+VE ++ +R TG++RGF FV S+ +I
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQDFANPELVE--VLYNRDTGQSRGFAFVTMSNVEDCNI 141
Query: 63 VIKEKHNIDG-----RMVEAKKA-VPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLAST 116
+I N+DG R ++ A P+ ++ L P K+FVG L+ T
Sbjct: 142 IID---NLDGTEYLGRALKVNFADKPKPNKEPLY-----------PETEHKLFVGNLSWT 187
Query: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL--LKTFHELNGK 174
VT F + G + V++D +T R RG+GF+ Y S+ ++ L L F EL G+
Sbjct: 188 VTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGF-ELEGR 246
Query: 175 MVEVKRA 181
+ V A
Sbjct: 247 AIRVNLA 253
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G I +E +L F + V E I+KD+ T +RG F++ AD ++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
HN KK +P + + + + G + K+FVG L V+E++ +
Sbjct: 79 CHN--------KKTLPGANSLLQVKYADGELE-----RLEHKLFVGMLPKNVSEAEVQSL 125
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
F ++GTI D+ ++ Q +G F+ Y+++E + +NGK
Sbjct: 126 FSKYGTIKDLQILRGAQ-QTSKGCAFLKYETKEQA----VSAMESINGK 169
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 28/198 (14%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S + +F+G +S + T+ L FS Y +A +M D+ TGR+RGFGFV F + A
Sbjct: 136 SSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 195
Query: 63 VIKEKHN--IDGRMVEAKKAVP-----RDDQTVLSRNSGSIHGSPGPGRTR--------- 106
I E + R + A D Q+ S++ + G T
Sbjct: 196 AIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQ 255
Query: 107 --KIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE-EAVD 161
++VG LA V++ D ++F G I +V V QR +GFGF+ Y + EA
Sbjct: 256 YTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRV------QRDKGFGFVRYSTHVEAAL 309
Query: 162 KVLLKTFHE-LNGKMVEV 178
+ + H L+G+ ++
Sbjct: 310 AIQMGNTHSYLSGRQMKC 327
>AT1G03457.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=429
Length = 429
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 19/171 (11%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G + TE +L F + V E I+K++TT RG F+ AD VI
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
HN KK +P + + + G + K+FVG L V+E++ +
Sbjct: 73 FHN--------KKTLPGASSPLQVKYADGELE-----RLEHKLFVGMLPKNVSETEVQSL 119
Query: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
F ++GTI D+ ++ + Q +G F+ Y+S+E + LNG+ +
Sbjct: 120 FSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQA----VAAMEALNGRHI 165
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 83/183 (45%), Gaps = 37/183 (20%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S + +F+G +S + T+ L + FSA+ +A +M D+ TGR+RGFGFV F + A
Sbjct: 145 SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 204
Query: 63 VIKE-------------------------KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIH 97
I E KH+ DG+ V +D LS N +
Sbjct: 205 AINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELS-NEDAPE 263
Query: 98 GSPGPGRTRKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYD 155
+P + ++VG L+ VT+ D + F G I +V V QR +GFGF+ Y+
Sbjct: 264 NNP---QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRV------QRDKGFGFVRYN 314
Query: 156 SEE 158
+ +
Sbjct: 315 THD 317
>AT1G03457.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:861109-864019 REVERSE LENGTH=438
Length = 438
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 22/177 (12%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLF+G + TE +L F + V E I+K++TT RG F+ AD VI
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNS-------GSIHGSPGPGRTRKIFVGGLASTVTE 119
HN KK +P + + + + S P K+FVG L V+E
Sbjct: 73 FHN--------KKTLPGASSPLQVKYADGELERLDVLDCSCNP--EHKLFVGMLPKNVSE 122
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
++ + F ++GTI D+ ++ + Q +G F+ Y+S+E + LNG+ +
Sbjct: 123 TEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQA----VAAMEALNGRHI 174
>AT2G22090.1 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9388571-9390450 REVERSE LENGTH=343
Length = 343
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ W+TT E L F YGE+ E ++ D+ TG+A+GFGFV+F A +KE
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLA 114
K I R + A ++ SG H PGP KI +G +A
Sbjct: 165 PKKRILNRTATCQLA------SMGPAASGKGHDQPGP---VKISMGSMA 204
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 91/199 (45%), Gaps = 24/199 (12%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L+IG + E + F+ GE A +++++ TG++ G+GF+ F +VA+
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHG-----SPGPGRTRKIFVGGLASTV 117
V++ + +P +QT + + G + GP T IFVG LA V
Sbjct: 117 VLQTYNGA---------PMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT--IFVGDLAPEV 165
Query: 118 TESDFKKYFDQ-FGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
T+ F +G++ V+ D T R +G+GF+ + E ++ E+NG+
Sbjct: 166 TDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENE----QMRAMTEMNGQYC 221
Query: 177 EVKRAVPKELSPGPSRSPL 195
+ P + P +++ L
Sbjct: 222 STR---PMRIGPAANKNAL 237
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 28/171 (16%)
Query: 8 LFIGGISWDTTEERLREYF-SAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ + T+ L + F + YG V A ++ DRTTGR++G+GFV F+D + ++
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD---ENEQMRA 212
Query: 67 KHNIDGRMVEA----------KKAVPRDDQTVLSRNS-GSIHGSPGPGRTRKIFVGGLAS 115
++G+ K A+P Q + +N+ G+ G P T IFVGGL +
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPM--QPAMYQNTQGANAGDNDPNNT-TIFVGGLDA 269
Query: 116 TVTESDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVL 164
VT+ + K F QFG + V + P G GF+ Y ++ + + L
Sbjct: 270 NVTDDELKSIFGQFGELLHVKI--------PPGKRCGFVQYANKASAEHAL 312
>AT2G22090.2 | Symbols: UBA1A | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:9389407-9390450 REVERSE LENGTH=347
Length = 347
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+ G+ W+TT E L F YGE+ E ++ D+ TG+A+GFGFV+F A +KE
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 67 -KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLA 114
K I R + A ++ SG H PGP KI +G +A
Sbjct: 165 PKKRILNRTATCQLA------SMGPAASGKGHDQPGP---VKISMGSMA 204
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 31/201 (15%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S + +F+G +S + T+ L FS Y +A +M D+ TGR+RGFGFV F + A
Sbjct: 136 SSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQT 195
Query: 63 VIKEKHN--IDGRMVEAKKAVP----------RDDQTVLSRNSG-------SIHGSPGPG 103
I E + R + A D ++V+ SG + +G
Sbjct: 196 AIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPEN 255
Query: 104 RTR--KIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGFITYDSE-E 158
+ ++VG LA V++ D ++F G I +V V QR +GFGF+ Y + E
Sbjct: 256 NAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRV------QRDKGFGFVRYSTHVE 309
Query: 159 AVDKVLLKTFHE-LNGKMVEV 178
A + + H L+G+ ++
Sbjct: 310 AALAIQMGNTHSYLSGRQMKC 330
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 8/157 (5%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
S G +FI + + L E FS++G ++ + D TGR++G+GFV F A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQA 191
Query: 63 VIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
I + ++G ++ K+ + + +P P R ++V L + E +
Sbjct: 192 AIDK---LNGMLMNDKQVFV--GHFIRRQERARDENTPTP-RFTNVYVKNLPKEIGEDEL 245
Query: 123 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 159
+K F +FG I+ VVM D + R FGF+ ++ EA
Sbjct: 246 RKTFGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEA 281
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++ + + E+ LR+ F +G + AV+M+D++ G +R FGFV F A +++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKM 289
Query: 68 HNID--------GRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ I GR A+K R+++ I+ + +++ L +V +
Sbjct: 290 NGISLGDDVLYVGR---AQKKSEREEELRRKFEQERINRFEK-SQGANLYLKNLDDSVDD 345
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQ-RPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176
K+ F ++G +T VM N Q RGFGF+ Y + E L+ E+NGKM+
Sbjct: 346 EKLKEMFSEYGNVTSSKVML--NPQGMSRGFGFVAYSNPEEA----LRALSEMNGKMI 397
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
++++G +S TT++ LRE FS YG VV+A++M+DR T R+RGFGFV +S + A+ +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 66 -EKHNIDGRMVEAK 78
+ ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDKVLL 165
+++VG L+ T T+ ++ F +G + D +VM D T R RGFGF+TY S EA V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 166 KTFHELNGKMVEVK 179
ELNG+ V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 90/181 (49%), Gaps = 9/181 (4%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F + TE + E+FS G+V + ++ DR + R++G G++ F D
Sbjct: 164 ERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVP 223
Query: 62 IVIKEKHNIDGRMVEAKKAV--PRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ I + G++ + + P + + L++++ + G GP RK++VG L ++E
Sbjct: 224 MAIA----LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPA-DRKLYVGNLHFNMSE 278
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE--AVDKVLLKTFHELNGKMVE 177
++ F+ FG + V + D T + +GFGFI + E ++ L E+ G+ ++
Sbjct: 279 LQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIK 338
Query: 178 V 178
V
Sbjct: 339 V 339
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
Q L++G + T+ +L E F+ G+VV + +D TT R+ G+G+V ++ P A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 62 IVIKEKH--NIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ E + ++GR + +V RD R SG IF+ L ++
Sbjct: 101 RALNELNFMALNGRAIRVMYSV-RDPSL---RKSG----------VGNIFIKNLDKSIDH 146
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ F FG I V D + Q +G+GF+ YD++EA + K LNG ++ K
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK----LNGMLLNDK 201
Query: 180 R 180
+
Sbjct: 202 Q 202
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS---DPAVADIVI 64
+++ +S ++E L + F +G VIM+D G+++GFGFV F D A A +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRN-SGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
K D K + +T L + S+ + + ++V L +VT+ +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++F FGTIT VM D + RG GF+ + + E + + E+NGKM+ K
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S L++ + T+++LRE+F+ +G + +M+D +G +RG GFV FS P A
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEAT 381
Query: 62 IVIKEKHNIDGRMVEAK 78
I E ++G+M+ K
Sbjct: 382 RAITE---MNGKMIVTK 395
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 21/181 (11%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
Q L++G + T+ +L E F+ G+VV + +D TT R+ G+G+V ++ P A
Sbjct: 41 QQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDAS 100
Query: 62 IVIKEKH--NIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ E + ++GR + +V RD R SG IF+ L ++
Sbjct: 101 RALNELNFMALNGRAIRVMYSV-RDPSL---RKSG----------VGNIFIKNLDKSIDH 146
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ F FG I V D + Q +G+GF+ YD++EA + K LNG ++ K
Sbjct: 147 KALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK----LNGMLLNDK 201
Query: 180 R 180
+
Sbjct: 202 Q 202
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 10/176 (5%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS---DPAVADIVI 64
+++ +S ++E L + F +G VIM+D G+++GFGFV F D A A +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 65 KEKHNIDGRMVEAKKAVPRDDQTVLSRN-SGSIHGSPGPGRTRKIFVGGLASTVTESDFK 123
K D K + +T L + S+ + + ++V L +VT+ +
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 124 KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
++F FGTIT VM D + RG GF+ + + E + + E+NGKM+ K
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S L++ + T+++LRE+F+ +G + +M+D +G +RG GFV FS P A
Sbjct: 323 KSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRD-PSGVSRGSGFVAFSTPEEAT 381
Query: 62 IVIKEKHNIDGRMVEAK 78
I E ++G+M+ K
Sbjct: 382 RAITE---MNGKMIVTK 395
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+ F+GG++W T + L F+ YG+V+++ I+ DR TGR+RGFGFV F D I+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 66 -EKHNIDGRMVEAKKA 80
++DGR + +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA + + F Q+G + D ++ D T R RGFGF+T+ E+A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 166 KTFHELNGKMVEVKRA 181
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F I+ TE + E+FS G+V + I+ DR + R+RG G+V F D
Sbjct: 178 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 237
Query: 62 IVIKEKHNIDGR-------MVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLA 114
+ I + G+ MV+ +A Q+ + P G R+++VG L
Sbjct: 238 MAIA----LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLH 293
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTFHELNG 173
++E D +K F+ FG++ V V D T +GFGF+ + E+A + + L E+ G
Sbjct: 294 INMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLEIAG 352
Query: 174 KMVEV 178
+ ++V
Sbjct: 353 RAIKV 357
>AT2G22100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9392397-9393545 REVERSE LENGTH=382
Length = 382
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF 54
+F+ G+ WDTT E L+ F YGE+ E ++ D+ TGRA+GFGFV+F
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 13/185 (7%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+ D +F I+ TE + E+FS G+V + I+ DR + R+RG G+V F D
Sbjct: 227 ERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVP 286
Query: 62 IVIKEKHNIDGR-------MVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLA 114
+ I + G+ MV+ +A Q+ + P G R+++VG L
Sbjct: 287 MAIA----LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLH 342
Query: 115 STVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTFHELNG 173
++E D +K F+ FG++ V V D T +GFGF+ + E+A + + L E+ G
Sbjct: 343 INMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLNGQLEIAG 401
Query: 174 KMVEV 178
+ ++V
Sbjct: 402 RAIKV 406
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+ F+GG++W T +E L+ FS +G+V+++ I+ DR +GR+RGFGFV F D I+E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 160
+ FVGGLA + D ++ F QFG + D ++ D + R RGFGF+T+ E+A+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+SW E+ L++ FS++GEV E I D+ +GR+RGFGFV F++ A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA---LSA 98
Query: 67 KHNIDGR 73
K +DG+
Sbjct: 99 KDAMDGK 105
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 157
K+F+GGL+ +V E K F FG + +V + YD + R RGFGF+ + E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+F+GG+S T E L+E F ++G++V+AV++ DR +G +RGFGFV + VA+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 67 KHN--IDGRMV 75
N +DGR++
Sbjct: 97 MQNKELDGRII 107
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 82 PRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDH 141
PR Q + G++ +P KIFVGGL+ + K+ F FG I D VV+ D
Sbjct: 17 PRALQASNAMLQGNLSLTPS-----KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDR 71
Query: 142 NTQRPRGFGFITYDSEEAVDKVLLKTFH-ELNGKMVEVKRA 181
+ RGFGF+TYDS E + + + EL+G+++ V A
Sbjct: 72 ESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPA 112
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 103/226 (45%), Gaps = 30/226 (13%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L E F A Y V A ++ DR TGR +G+GFV FSD + + E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 67 KHNIDGRM-------VEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ + +KK V + S +G + P T +FVGGL ++VT+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAG-VTTDNDPNNT-TVFVGGLDASVTD 274
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRG--FGFITYDSEEAVDKVLLKTFH--ELNGKM 175
K F Q+G I V + P G GF+ + SE++ + L+ + +L G
Sbjct: 275 DHLKNVFSQYGEIVHVKI--------PAGKRCGFVQF-SEKSCAEEALRMLNGVQLGGTT 325
Query: 176 VEVK--RAVPKELSPGPSRSPLGGYSYGLNRVNSFLNGFTQGYTPN 219
V + R+ + S PS+ GGY G + G+T PN
Sbjct: 326 VRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQY-----GYTMPQDPN 366
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L F+ GE+V A +++++ TG+ G+GF+ F+ A A+ V++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRK----IFVGGLASTVTESDFK 123
+N +P + N S+ S G R IFVG LA+ VT+
Sbjct: 124 NN---------APIPSFPDQLFRLNWASL--SSGDKRDDSPDYTIFVGDLAADVTDYILL 172
Query: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ F + ++ V+ D T R +G+GF+ + E ++ E+NG +
Sbjct: 173 ETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE----QIRAMTEMNGVPCSTR--- 225
Query: 183 PKELSPGPSR 192
P + P S+
Sbjct: 226 PMRIGPAASK 235
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+ F+GG++W T + L F+ YG+V+++ I+ DR TGR+RGFGFV F D I+
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 66 -EKHNIDGRMVEAKKA 80
++DGR + +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLL 165
+ FVGGLA + + F Q+G + D ++ D T R RGFGF+T+ E+A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 166 KTFHELNGKMVEVKRA 181
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+L + W +T E +R F YG V++ + M R RG F+ + P A +K
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVID-IEMSMHKKERNRGLVFIEMASPEEAATALKS 153
Query: 66 -EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
E +GR ++ D + + + +P P T +FV LA K+
Sbjct: 154 LESCEYEGRRLKV------DYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKE 207
Query: 125 YFD-QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
+FD G + V++ N +R G+GF+++ +++ + L+ E GK
Sbjct: 208 FFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI----EFQGK 254
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+++GG+ W T +E L +F +GE++ ++ DR T R++G+GFV F D A K+
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 67 KH-NIDGRMVEAKKA 80
+ I+GR+ K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+++GG+ W+T E LR YF +G+++ ++ DR TGR+ G+GFV F D A +
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 67 -KHNIDGRMVEAK 78
K IDGR EAK
Sbjct: 113 PKPVIDGR--EAK 123
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 41/187 (21%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVV----EAVIMKDRTTGRARGFGFVVFSDPA 58
S + +F+G +S + T+ L + FSA+ +A +M D+ TGR+RGFGFV F +
Sbjct: 145 SSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQ 204
Query: 59 VADIVIKE-------------------------KHNIDGRMVEAKKAVPRDDQTVLSRNS 93
A I E KH+ DG+ V +D LS N
Sbjct: 205 DAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELS-NE 263
Query: 94 GSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQF--GTITDVVVMYDHNTQRPRGFGF 151
+ +P + ++VG L+ VT+ D + F G I +V V QR +GFGF
Sbjct: 264 DAPENNP---QFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRV------QRDKGFGF 314
Query: 152 ITYDSEE 158
+ Y++ +
Sbjct: 315 VRYNTHD 321
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 27/191 (14%)
Query: 3 SDNG---KLFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPA 58
S+NG +F+G ++ D ++ L E F+ Y V A ++ D TGR++G+GFV F D
Sbjct: 207 SENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDEN 266
Query: 59 VADIVIKEKHN--IDGRMVEAKKAVPRDDQTVLSRNSGSI------HG-----SPGPGRT 105
+ E + R + A P+ +N HG S G
Sbjct: 267 ERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNN 326
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165
IFVGGL + VTE D + F FG + V + +G GF+ + + ++ ++ +
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAI- 379
Query: 166 KTFHELNGKMV 176
LNG ++
Sbjct: 380 ---GNLNGTVI 387
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8383856-8386604 FORWARD LENGTH=613
Length = 613
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF 54
+F+ G WDTT+E L+ F +YGE+ E ++ D+ TGR +G+GFV+F
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIK- 65
+L + W +T E +R F YG V++ + M R RG F+ + P A +K
Sbjct: 35 RLIAQNVPWTSTPEDIRSLFEKYGSVID-IEMSMHKKERNRGLVFIEMASPEEAATALKS 93
Query: 66 -EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
E +GR ++ D + + + +P P T +FV LA K+
Sbjct: 94 LESCEYEGRRLKV------DYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKE 147
Query: 125 YFD-QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK 174
+FD G + V++ N +R G+GF+++ +++ + L+ E GK
Sbjct: 148 FFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALI----EFQGK 194
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D TE L+ + + GEV E IM+++ +G +G+ FV F +A I
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
+N D R + + + + H ++F+G + ESD KK
Sbjct: 153 LNNTDFR-----------GKRIKCSTTQAKH---------RLFLGNVPRNWMESDIKKAA 192
Query: 127 DQFGTITDVVVM--YDHNTQRPRGFGFITY 154
++ G +V + N R RGF FI Y
Sbjct: 193 NRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++++GGI D TE L+ + + GEV E IM+++ +G +G+ FV F +A I
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 67 KHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYF 126
+N D R + + + + H ++F+G + ESD KK
Sbjct: 153 LNNTDFR-----------GKRIKCSTTQAKH---------RLFLGNVPRNWMESDIKKAA 192
Query: 127 DQFGTITDVVVM--YDHNTQRPRGFGFITY 154
++ G +V + N R RGF FI Y
Sbjct: 193 NRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFIGG+S+ TTE+ L E FS G+VVEA I+ DR + R++GFGFV F+ A + E
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 67 --KHNIDGRMV 75
++GR +
Sbjct: 95 FNGQQLNGRTI 105
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 103 GRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162
G K+F+GGL+ TE + F + G + + ++ D + R +GFGF+T+ S + K
Sbjct: 31 GVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQK 90
Query: 163 VLLK-TFHELNGKMVEVKRAVPKELSPGPSRSPLG 196
L++ +LNG+ + V A K+ G P+
Sbjct: 91 ALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIA 125
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19423791-19426846 FORWARD
LENGTH=512
Length = 512
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 6 GKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS-----DPAVA 60
KL++ IS TE +R+ F YG V E ++ KD+ TG + F+ + + A+A
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 61 DIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTES 120
+ E+ G M+ K ++ + + +P K++V L T+
Sbjct: 170 --ALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNP------KLYVRCLNKQTTKM 221
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+ + F ++G I D+ + D + + RG+ F+ + +E + L LNG
Sbjct: 222 EVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE----MALAAIKALNG 269
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 28/193 (14%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D L++G + E L FS GEV +++++ T ++ G+GFV F A A+ V
Sbjct: 106 DVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEV 165
Query: 64 IKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRK------IFVGGLASTV 117
++ N G + +P DQ N S S G R + +FVG L+ V
Sbjct: 166 LQ---NYSGSV------MPNSDQP-FRINWASF--STGEKRAVENGPDLSVFVGDLSPDV 213
Query: 118 TESDFKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG--- 173
T+ + F D++ ++ V+ D NT R +G+GF+ + E + L E+NG
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT----EMNGAYC 269
Query: 174 --KMVEVKRAVPK 184
+ + V A PK
Sbjct: 270 SNRQMRVGIATPK 282
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 86/189 (45%), Gaps = 31/189 (16%)
Query: 8 LFIGGISWDTTEERLREYFS-AYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G +S D T+ L E FS Y V A ++ D TGR++G+GFV F D + E
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 67 KH-----NIDGR--MVEAKKAVPRDDQ-----TVLSRNSGSI----HGSPGPGRTRK--I 108
+ N R + K+A+ Q +L+ GS +GS G + I
Sbjct: 264 MNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATI 323
Query: 109 FVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DSEEAVDKVLLKT 167
FVGG+ V + D ++ F QFG + V + +G GF+ + D + A D +
Sbjct: 324 FVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKSAEDAI---- 373
Query: 168 FHELNGKMV 176
LNG ++
Sbjct: 374 -ESLNGTVI 381
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
K+++ G+ W T E L YF +GE+V A ++ D T R++GFGFV F + A +
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 67 -KHNIDGRMVEAKKA 80
H IDGR V K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 104 RTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163
R KI+V GL YF++FG I V+ D TQR +GFGF+T+ E+ +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 164 LLKTFHELNGKMVEVKRA 181
H ++G+ V K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
++FV L++ T+ ++ F FG I + ++ D TQRP+GFGFIT+DSE+ K L
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL-- 65
Query: 167 TFHELNGKMVE 177
L+GK+V+
Sbjct: 66 --KSLDGKIVD 74
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 5 NGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
+ +LF+ +S TT++ LR+ FS +G++ EA +++D T R +GFGF+ F A +
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 65 KEKHNIDGRMVEAK 78
K ++DG++V+ +
Sbjct: 66 K---SLDGKIVDGR 76
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSD 56
K+F+G ++W TT + LR YF +G+VV+A ++ + GR++G+GF+ F D
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRD 62
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L F+ GE+V A +++++ TG+ G+GF+ F+ A A+ V++
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRK----IFVGGLASTVTESDFK 123
+N +P + N S+ S G R IFVG LA+ VT+
Sbjct: 124 NN---------APIPSFPDQLFRLNWASL--SSGDKRDDSPDYTIFVGDLAADVTDYILL 172
Query: 124 KYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182
+ F + ++ V+ D T R +G+GF+ + E ++ E+NG +
Sbjct: 173 ETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE----QIRAMTEMNGVPCSTR--- 225
Query: 183 PKELSPGPSR 192
P + P S+
Sbjct: 226 PMRIGPAASK 235
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L E F A Y V A ++ DR TGR +G+GFV FSD + + E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 67 KHNIDGRM-------VEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTE 119
+ + +KK V + S +G + P T +FVGGL ++VT+
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAG-VTTDNDPNNT-TVFVGGLDASVTD 274
Query: 120 SDFKKYFDQFGTITDVVV 137
K F Q+G I V +
Sbjct: 275 DHLKNVFSQYGEIVHVKI 292
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 13/185 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+L++ I +L + F +G V+ + ++ TG +RG G+V A I I
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 67 KH--NIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGP----GRTRKIFVGGLASTVTES 120
+ GR + + +V + T RN ++ +P K++VG L
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGT--RRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 226
Query: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKR 180
+ +F +FGTI V++D T R R F F+++ S E D L NG E +R
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGRR 281
Query: 181 AVPKE 185
+ +E
Sbjct: 282 IIVRE 286
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS 55
M K+++G + W T + LR +FS +G +V ++ DR TGR R F F+ F+
Sbjct: 207 MYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 261
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 22/194 (11%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVV---------EAVIMKDRTTGRARGFGFV 52
+ D +F I+ TE + E+FS G+V + I+ DR + R+RG G+V
Sbjct: 207 ERDQRTVFAYQIALRATERDVYEFFSRAGKVCPFLCRFHVRDVRIIMDRISRRSRGIGYV 266
Query: 53 VFSDPAVADIVIKEKHNIDGR-------MVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRT 105
F D + I + G+ MV+ +A Q+ + P G
Sbjct: 267 EFYDTMSVPMAIA----LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGA 322
Query: 106 RKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVL 164
R+++VG L ++E D +K F+ FG++ V V D T +GFGF+ + E+A + +
Sbjct: 323 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALN 381
Query: 165 LKTFHELNGKMVEV 178
L E+ G+ ++V
Sbjct: 382 LNGQLEIAGRAIKV 395
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D G+LF+ G+ + TTEE L E+FS +G++ E ++ D+ T RG FV++ P A +
Sbjct: 225 DAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMA 284
Query: 64 IK--EKHNIDGRMVEAKKAVPR 83
+ +K GR + A PR
Sbjct: 285 MDKLDKLPFQGRTLHILPAKPR 306
>AT2G37510.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15743112-15744504 REVERSE LENGTH=142
Length = 142
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 40/49 (81%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS 55
+LF+ G+S TT E+L++ F+++G++V+A ++ DR +GR++GFGFV ++
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYA 83
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
LF G +S+ + +F GEVV+ V + G +G+G + F+ P A +
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASPEEAQKAL--- 441
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGR------TRKIFVGGLASTVTESD 121
++G+++ + RD + L+ G+ S PGR +R I+V G +S++ E +
Sbjct: 442 -EMNGKLL-----LGRDVRLDLANERGTPRNS-NPGRKGEGSQSRTIYVRGFSSSLGEDE 494
Query: 122 FKK----YFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVE 177
KK +F + G +T V V D T RGF +I S D+ L + E+ G +
Sbjct: 495 IKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS--GFDEALQLSGSEIGGGNIH 552
Query: 178 VKRAVPKELSPGPS--RSPLGGYSYG 201
V+ + P++ G S R+P G G
Sbjct: 553 VEESRPRDSDEGRSSNRAPARGAPRG 578
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+L++G +SW + L F+ G+VVEA ++ DR +GR++GFGFV S I
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 67 KH--NIDGRMVEAKKAVPR 83
+ ++DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+L++G +SW + L F+ G+VVEA ++ DR +GR++GFGFV S I
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 67 KH--NIDGRMVEAKKAVPR 83
+ ++DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+L++G +SW + L F+ G+VVEA ++ DR +GR++GFGFV S I
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 67 KH--NIDGRMVEAKKAVPR 83
+ ++DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L FS GE+V +++++ TG+ G+GF+ F A A+ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ-- 83
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G + + R L+ S G IFVG LA VT+ ++ F
Sbjct: 84 -TYNGTQMPGTELTFR-----LNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-----KMVEVKRA 181
+ ++ V+ D +T R +G+GF+ + E ++ + E+NG + + + A
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA----EMNGLYCSTRPMRISAA 193
Query: 182 VPKE 185
PK+
Sbjct: 194 TPKK 197
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 27/177 (15%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L+E F Y V A ++ D +TGR++G+GFV F++ + + + E
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 67 KHNI--DGRMVEAKKAVPRDDQ----------TVLSRNSGSIHGSPGPGRT----RKIFV 110
+ + R + A P+ + TV S + + P + I V
Sbjct: 178 MNGLYCSTRPMRISAATPKKNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISV 237
Query: 111 GGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS----EEAVDKV 163
L VTE + KK F Q G + V + +G+G++ + + EEAV ++
Sbjct: 238 ANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTRPSAEEAVQRM 288
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+L++G +SW + L F+ G+VVEA ++ DR +GR++GFGFV S I
Sbjct: 279 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 67 KH--NIDGRMVEAKKAVPR 83
+ ++DGR + +A R
Sbjct: 339 LNGADLDGRQIRVSEAEAR 357
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
L+IG + + E L FS GE+V +++++ TG+ G+GF+ F A A+ ++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ-- 83
Query: 68 HNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFD 127
+G + + R L+ S G IFVG LA VT+ ++ F
Sbjct: 84 -TYNGTQMPGTELTFR-----LNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 128 -QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG-----KMVEVKRA 181
+ ++ V+ D +T R +G+GF+ + E ++ + E+NG + + + A
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMA----EMNGLYCSTRPMRISAA 193
Query: 182 VPKE 185
PK+
Sbjct: 194 TPKK 197
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 8 LFIGGISWDTTEERLREYFSA-YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
+F+G ++ D T+ L+E F Y V A ++ D +TGR++G+GFV F++ + + + E
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 67 KHNI--DGRMVEAKKAVPRDDQ--------------TVLSRNSGSIHGSPGPGRT----R 106
+ + R + A P+ + TV S + + P +
Sbjct: 178 MNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCT 237
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS----EEAVDK 162
I V L VTE + KK F Q G + V + +G+G++ + + EEAV +
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTRPSAEEAVQR 291
Query: 163 V 163
+
Sbjct: 292 M 292
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 14/186 (7%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEA-VIMKDRTTGRARGFGFVVFSDPAVADIVIK 65
+L++ I +L + F +G V+ V+ ++ TG +RG G+V A I I
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 66 --EKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGP----GRTRKIFVGGLASTVTE 119
+ + GR + + +V + T RN ++ +P K++VG L
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGT--RRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 226
Query: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179
+ +F +FGTI V++D T R R F F+++ S E D L NG E +
Sbjct: 227 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGR 281
Query: 180 RAVPKE 185
R + +E
Sbjct: 282 RIIVRE 287
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 1 MQSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS 55
M K+++G + W T + LR +FS +G +V ++ DR TGR R F F+ F+
Sbjct: 208 MYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 262
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 102 PGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161
P +T+K+F+ GL+ +E + F+ FG + +V ++ D ++R +G+ F+ Y +EEA
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGGYSYGL 202
L E+NGK++ V P R S+GL
Sbjct: 338 TAL----KEMNGKIINGWMIVVDVAKTKPFRQNRSQPSFGL 374
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KLFI G+S+ T+E+ LR F +GE+VE I+ D+ + R++G+ F+ ++ A +KE
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 67 KHN--IDGRMV 75
+ I+G M+
Sbjct: 343 MNGKIINGWMI 353
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
LF +S++ + +F GEVV+ +R G RGFG V F+ A + E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL-EF 357
Query: 68 HN--IDGRMVE---AKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDF 122
H + GR + A++ R ++ + SG+ G +KIFV G ++++E D
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDI 417
Query: 123 K----KYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
K ++F G I +V V D +T +G ++ + E +K L ELNG
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKAL-----ELNG 465
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D G+LF+ + + TEE L E+FS +G++ E ++ D+ T R+RG ++++ P A
Sbjct: 292 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 351
Query: 64 IKEKHN--IDGRMV 75
++E N GR++
Sbjct: 352 MEELDNSSFQGRLL 365
>AT2G27330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:11695350-11696563 REVERSE LENGTH=116
Length = 116
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 2 QSDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+S + LF+ GIS+ +TEE L + FS YG+V++ ++ D+ R +GF +V FS A+
Sbjct: 17 RSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAE 76
Query: 62 IVIKEKHN--IDGRMV-----EAKKAVPRDDQ 86
+ E + +DGR+V +A K P D +
Sbjct: 77 KALLELNAQLVDGRVVILDTTKAAKHNPPDTK 108
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167
+FV G++ + TE + F Q+G + V V+ D RP+GF ++T+ S+E +K LL
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALL-- 80
Query: 168 FHELNGKMVE 177
ELN ++V+
Sbjct: 81 --ELNAQLVD 88
>AT1G60900.1 | Symbols: | U2 snRNP auxilliary factor, large
subunit, splicing factor | chr1:22424008-22427806
FORWARD LENGTH=589
Length = 589
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVI 64
++F+GG+ + TE ++RE ++G + ++KDR TG ++G+ F V+ DP+V DI
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIAC 433
>AT5G54580.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22171332-22172656 FORWARD LENGTH=156
Length = 156
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVADIVIK 65
LF+ G+S TT E LR F+ +GEV +A ++ DR +G ++GFGFV ++ + + I
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 66 EKHNIDGRMVEAKKAVPRDD 85
+ +DG ++ A+ A PR+
Sbjct: 118 DGKFLDGWVIFAEYARPREQ 137
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEV--VEAVIMKDRTTGRARGFGFVVFS--DPAVADI 62
KLF+ + W + + E F G V VE + KD G+ RGF FV + + A A I
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD---GKNRGFAFVTMASGEEAQAAI 152
Query: 63 VIKEKHNIDGRMVEA------KKAVPRDDQTVLSRNSGSIHGSPGPGRTR-KIFVGGLAS 115
+ + GR++ KK P+ + SP PG TR K++V LA
Sbjct: 153 DKFDTFQVSGRIISVSFARRFKKPTPKSPNDL---------PSPAPGDTRHKLYVSNLAW 203
Query: 116 TVTESDFKKYFD--QFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+ ++ F F ++ VV D R G+GF+++ + E + + K LNG
Sbjct: 204 KARSTHLRELFTAADFNPVSARVVFADPEG-RSSGYGFVSFATREEAENAITK----LNG 258
Query: 174 KMV 176
K +
Sbjct: 259 KEI 261
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 108 IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167
++V GL+ VTE D + +F + G +TDV ++ D T+ RGFGFI+ S ++ +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 168 FHE-LNGKMVEVKRA 181
H L G+++ V++A
Sbjct: 137 DHSVLQGRVITVEKA 151
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 61/105 (58%), Gaps = 11/105 (10%)
Query: 1 MQSDNGK-LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAV 59
M D+G +++GG+ +D TEE +R FS YG V+ I+ DR+ R + +GFV FS+
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRS 59
Query: 60 ADIVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGR 104
AD I+ ++DG+ + +AV +D T G + +PGPGR
Sbjct: 60 ADDAIE---DMDGKSI-GGRAVRVNDVTT---RGGRM--NPGPGR 95
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 81/173 (46%), Gaps = 13/173 (7%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSA--YGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAD 61
+N +++G + E L F++ E+V +++++ G + G+GFV F VAD
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 62 IVIKEKHNIDGRMVEAKKAVPRDDQTVLSRNSGSIHGSPGPGRTRKIFVGGLASTVTESD 121
V++E +G + R + S + + G IFVG L+ V+++
Sbjct: 159 KVLRE---FNGTTMPNTDQPFRLNWASFSTGEKRLENN---GPDLSIFVGDLSPDVSDNL 212
Query: 122 FKKYF-DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNG 173
+ F +++ ++ V+ D NT R +G+GF+ + E K + E+NG
Sbjct: 213 LHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT----EMNG 261
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVA 60
+F+G I +D TEE+LRE G VV ++ DR TG+ +G+GF + D A
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETA 63
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 109 FVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DKVLLKT 167
FV GL E D F +FG + D ++YD +T + R FGF+T++ E+++ D +++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 168 FHELNGKMVEV 178
E K V V
Sbjct: 70 VEESRSKCVNV 80
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 9 FIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSD 56
F+ G+ DT E+ L + FS +G V+++ I+ DR TG++R FGFV F +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEE 57
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMY-DHNTQRPRGFGFITYDSEEAVDKVLL 165
KIFVG L + + + +F+++F QFG I +V+++ H ++ GFGFI Y +E++ K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 166 KTFHELNGKMVEVK 179
E +G+++ VK
Sbjct: 226 FDGVEFHGRILTVK 239
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 12/99 (12%)
Query: 107 KIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166
K++V GL+ TE + F+QFG + + ++ D RP+GF F+ Y++EE K ++
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA-IQ 136
Query: 167 TFH--ELNGKMV---------EVKRAVPKELSPGPSRSP 194
H L+G+++ ++ RA P+ P P P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
KL++ G+S+ TTE+ LR+ F +G ++ ++ D+ R +GF F+ + A I+
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 67 KHN--IDGRMVEAKKAVPRDDQT 87
H +DGR++ ++A R D +
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMS 160
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFS--DPAVADIVI 64
K+ + + + T+E+ L+ FSA+GE+ E ++KD R++G+ F+ F+ D A I
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 65 KEKHNIDGRMVEAKKAVP-RDDQTVLSRNSGSIHGSPGP 102
++ +GRM+ A P + D L R SG S P
Sbjct: 101 MDRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPPEKSDEP 139
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L + I++ TT + L F+ YG+VV+ I +DR TG +RGF FV + D
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YKDE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGR+V+ ++
Sbjct: 70 AHKAVERLDGRVVDGRE 86
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 3 SDNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADI 62
SD L + I++ TT + L F+ YG+VV+ I +DR TG +RGF FV + D
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYK---YKDE 69
Query: 63 VIKEKHNIDGRMVEAKK 79
K +DGR+V+ ++
Sbjct: 70 AHKAVERLDGRVVDGRE 86
>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
chr5:19203801-19204951 FORWARD LENGTH=212
Length = 212
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 35/48 (72%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVF 54
KL+IGG+S T E L++ FS++ V EA +M ++ TGR+RG+GFV F
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D L+IG + ++ L FS++GE+V A ++KDR TG ++G+GFV ++D +A+
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 64 IKEK--HNIDGRMVEAKKA 80
++ + +GR + + A
Sbjct: 538 VQAMNGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D L+IG + ++ L FS++GE+V A ++KDR TG ++G+GFV ++D +A+
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 64 IKEK--HNIDGRMVEAKKA 80
++ + +GR + + A
Sbjct: 538 VQAMNGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 4 DNGKLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIV 63
D L+IG + ++ L FS++GE+V A ++KDR TG ++G+GFV ++D +A+
Sbjct: 478 DETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 64 IKEK--HNIDGRMVEAKKA 80
++ + +GR + + A
Sbjct: 538 VQAMNGYRFEGRTLAVRIA 556
>AT4G36690.4 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=551
Length = 551
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ + TE ++RE ++G + ++KDR TG ++G+ F V+ D +V DI
Sbjct: 338 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 397
Query: 67 KHNIDGRMVEAKKAVPRDDQ-TVLSRNSGS---IHGSPGPGRTRKIFVGG--------LA 114
+ I +M + V R +Q T+L + +H R + G L
Sbjct: 398 LNGI--KMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLT 455
Query: 115 STVTESDFK---KYFD----------QFGTITDVVV 137
VTE + + +Y D +FG +T+VV+
Sbjct: 456 QVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVI 491
>AT4G36690.1 | Symbols: ATU2AF65A | U2 snRNP auxilliary factor,
large subunit, splicing factor | chr4:17294139-17297609
REVERSE LENGTH=573
Length = 573
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 27/156 (17%)
Query: 7 KLFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKE 66
++F+GG+ + TE ++RE ++G + ++KDR TG ++G+ F V+ D +V DI
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 67 KHNIDGRMVEAKKAVPRDDQ-TVLSRNSGS---IHGSPGPGRTRKIFVGG--------LA 114
+ I +M + V R +Q T+L + +H R + G L
Sbjct: 420 LNGI--KMGDKTLTVRRANQGTMLQKPEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLT 477
Query: 115 STVTESDFK---KYFD----------QFGTITDVVV 137
VTE + + +Y D +FG +T+VV+
Sbjct: 478 QVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVI 513
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 8 LFIGGISWDTTEERLREYFSAYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVADIVIKEK 67
+++GGI +D TE L FS YGE+V+ +++D+ TG+++GF F+ + D + +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAV--- 94
Query: 68 HNIDGRMV 75
N++G +V
Sbjct: 95 DNLNGALV 102