Miyakogusa Predicted Gene

Lj2g3v3337600.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3337600.1 tr|Q5W964|Q5W964_9BRYO PpPPR_98 protein
OS=Physcomitrella patens GN=PpPPR_98 PE=2 SV=1,29.41,2e-18,no
description,Tetratricopeptide-like helical; seg,NULL; PPR:
pentatricopeptide repeat domain,Pentat,gene.g44630.t1.1
         (608 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-li...   522   e-148
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li...   496   e-140
AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 ...   474   e-134
AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   473   e-133
AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   471   e-133
AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   470   e-132
AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) su...   469   e-132
AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-li...   462   e-130
AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly, ...   459   e-129
AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   456   e-128
AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of...   454   e-128
AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   450   e-126
AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   446   e-125
AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat (TPR)-...   444   e-125
AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-...   443   e-124
AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   442   e-124
AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   439   e-123
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) sup...   439   e-123
AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   439   e-123
AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   435   e-122
AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   432   e-121
AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   432   e-121
AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   431   e-120
AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   431   e-120
AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR) su...   430   e-120
AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   428   e-120
AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   426   e-119
AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR) sup...   421   e-118
AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   420   e-117
AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   420   e-117
AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   419   e-117
AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   419   e-117
AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   419   e-117
AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   418   e-117
AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-li...   418   e-117
AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   416   e-116
AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   416   e-116
AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   413   e-115
AT5G09950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   407   e-113
AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   405   e-113
AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   404   e-112
AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   402   e-112
AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   401   e-112
AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   399   e-111
AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   399   e-111
AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   397   e-110
AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   395   e-110
AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR) su...   395   e-110
AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   394   e-109
AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   393   e-109
AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   392   e-109
AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   391   e-109
AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   390   e-108
AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   390   e-108
AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR) su...   390   e-108
AT2G41080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   387   e-107
AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-95110...   387   e-107
AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   387   e-107
AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   386   e-107
AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR) su...   385   e-107
AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   384   e-107
AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-lik...   384   e-107
AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   382   e-106
AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   382   e-106
AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   381   e-106
AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (P...   380   e-105
AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   380   e-105
AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   379   e-105
AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   376   e-104
AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide re...   374   e-104
AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   374   e-104
AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   369   e-102
AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   369   e-102
AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 ...   364   e-100
AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   361   e-100
AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   360   2e-99
AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   360   2e-99
AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   357   1e-98
AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   356   3e-98
AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   353   2e-97
AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   352   6e-97
AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR) ...   350   1e-96
AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) D...   341   8e-94
AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   341   1e-93
AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   340   1e-93
AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   339   3e-93
AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   338   6e-93
AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   338   6e-93
AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   337   2e-92
AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   335   6e-92
AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   335   7e-92
AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   333   2e-91
AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   332   3e-91
AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-li...   330   2e-90
AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   330   3e-90
AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   330   3e-90
AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   329   3e-90
AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 ...   329   3e-90
AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   329   4e-90
AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   327   1e-89
AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   323   3e-88
AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   321   1e-87
AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   320   2e-87
AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   319   4e-87
AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   318   5e-87
AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   317   1e-86
AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   317   1e-86
AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   317   1e-86
AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   317   2e-86
AT1G71420.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   315   5e-86
AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 ...   313   2e-85
AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   313   2e-85
AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   313   3e-85
AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   311   1e-84
AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-li...   310   2e-84
AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   308   6e-84
AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   308   6e-84
AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   308   1e-83
AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   307   1e-83
AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 | c...   307   2e-83
AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   306   2e-83
AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   306   2e-83
AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   305   6e-83
AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   302   5e-82
AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat ...   301   6e-82
AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   300   2e-81
AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   299   3e-81
AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   299   4e-81
AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   298   6e-81
AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   298   1e-80
AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   296   2e-80
AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   294   2e-79
AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   293   2e-79
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 ...   293   2e-79
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopepti...   293   3e-79
AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   289   5e-78
AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   288   5e-78
AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   287   1e-77
AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   287   1e-77
AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   287   2e-77
AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   284   1e-76
AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   283   2e-76
AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   283   2e-76
AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   283   2e-76
AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   283   3e-76
AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   282   6e-76
AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   281   1e-75
AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   276   4e-74
AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   274   1e-73
AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   274   1e-73
AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   272   5e-73
AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   272   5e-73
AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   272   6e-73
AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   271   1e-72
AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   271   1e-72
AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   271   1e-72
AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   268   1e-71
AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   266   3e-71
AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   266   4e-71
AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   265   1e-70
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...   263   3e-70
AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   261   1e-69
AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   260   2e-69
AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   260   2e-69
AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   260   3e-69
AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   256   4e-68
AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   255   6e-68
AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   254   2e-67
AT5G66500.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   251   8e-67
AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   251   1e-66
AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   249   4e-66
AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   249   5e-66
AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   249   5e-66
AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   246   3e-65
AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   246   5e-65
AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   245   5e-65
AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   244   2e-64
AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   243   4e-64
AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   242   5e-64
AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   241   1e-63
AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   241   2e-63
AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   240   2e-63
AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   236   5e-62
AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   235   6e-62
AT4G16470.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   235   9e-62
AT1G74400.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   233   4e-61
AT1G09220.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   233   4e-61
AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   232   5e-61
AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   229   4e-60
AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   228   7e-60
AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   227   2e-59
AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   223   3e-58
AT4G14170.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   221   2e-57
AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   211   1e-54
AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   211   2e-54
AT1G23450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   211   2e-54
AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   209   6e-54
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 ...   204   2e-52
AT2G25580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   203   3e-52
AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   199   4e-51
AT2G15690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   199   7e-51
AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   198   7e-51
AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   195   7e-50
AT1G29710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   192   5e-49
AT4G32450.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   186   3e-47
AT2G34370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   159   5e-39
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...   145   6e-35
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   144   2e-34
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   143   3e-34
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   142   6e-34
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   135   1e-31
AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   134   2e-31
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   133   3e-31
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   132   8e-31
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...   132   1e-30
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   131   1e-30
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   131   2e-30
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   130   3e-30
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   130   3e-30
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   130   4e-30
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   125   1e-28
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su...   124   1e-28
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...   124   3e-28
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   122   9e-28
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   121   2e-27
AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   120   3e-27
AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   119   5e-27
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   119   5e-27
AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   119   5e-27
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   119   6e-27
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   119   6e-27
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   119   7e-27
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   118   9e-27
AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   118   1e-26
AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   117   2e-26
AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   116   5e-26
AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   116   5e-26
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   116   5e-26
AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   116   5e-26
AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   115   7e-26
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   115   8e-26
AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   115   8e-26
AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   115   8e-26
AT1G47580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   114   1e-25
AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   114   2e-25
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   114   3e-25
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   114   3e-25
AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   113   3e-25
AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   113   4e-25
AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   113   4e-25
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...   113   5e-25
AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   112   5e-25
AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   112   5e-25
AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   112   6e-25
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   112   9e-25
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   112   1e-24
AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   110   3e-24
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   110   4e-24
AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   107   2e-23
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   107   3e-23
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   106   4e-23
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   105   6e-23
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   105   1e-22
AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   104   2e-22
AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   102   7e-22
AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   101   1e-21
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   101   2e-21
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...   100   2e-21
AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   100   2e-21
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...   100   4e-21
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   100   4e-21
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   100   4e-21
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...   100   4e-21
AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   100   5e-21
AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    99   1e-20
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ...    98   1e-20
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    98   1e-20
AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    98   1e-20
AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    98   1e-20
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    98   2e-20
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    97   2e-20
AT3G23020.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   4e-20
AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    97   5e-20
AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   5e-20
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    96   9e-20
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    95   2e-19
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    94   2e-19
AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    94   3e-19
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...    94   3e-19
AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    93   4e-19
AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    92   1e-18
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    91   2e-18
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    91   3e-18
AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR) ...    90   4e-18
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    90   4e-18
AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    89   6e-18
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    89   6e-18
AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   7e-18
AT1G79080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   8e-18
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    89   1e-17
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   1e-17
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    88   2e-17
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    88   2e-17
AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   2e-17
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   3e-17
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   3e-17
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   3e-17
AT4G01570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    87   3e-17
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    87   5e-17
AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    86   6e-17
AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    86   6e-17
AT3G13160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    86   7e-17
AT3G16010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    86   9e-17
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    86   9e-17
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    86   1e-16
AT2G37230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    86   1e-16
AT2G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    84   3e-16
AT2G35130.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    84   3e-16
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    84   4e-16
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ...    84   4e-16
AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    83   6e-16
AT3G53170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    82   1e-15
AT4G20740.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    82   2e-15
AT1G31790.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    81   2e-15
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    81   2e-15
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    81   2e-15
AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    81   2e-15
AT1G55890.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   3e-15
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   4e-15
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    80   4e-15
AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   9e-15
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    79   1e-14
AT5G39980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    79   1e-14
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931...    78   1e-14
AT4G34830.1 | Symbols: MRL1 | Pentatricopeptide repeat (PPR) sup...    78   2e-14
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   2e-14
AT3G59040.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    78   2e-14
AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   2e-14
AT3G18110.1 | Symbols: EMB1270 | Pentatricopeptide repeat (PPR) ...    78   2e-14
AT3G59040.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    77   2e-14
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (...    77   4e-14
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   4e-14
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su...    75   1e-13
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...    74   3e-13
AT3G49730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    73   5e-13
AT4G16390.1 | Symbols: SVR7 | pentatricopeptide (PPR) repeat-con...    72   1e-12
AT1G53330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    72   1e-12
AT1G79490.1 | Symbols: EMB2217 | Pentatricopeptide repeat (PPR) ...    71   2e-12
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   3e-12
AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   5e-12
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr...    69   6e-12
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   7e-12
AT5G65820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   9e-12
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    69   9e-12
AT5G50280.1 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) ...    69   1e-11
AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    68   2e-11
AT3G17370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   2e-11
AT5G43820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    68   2e-11
AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    68   2e-11
AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   3e-11
AT2G27800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   4e-11
AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    67   4e-11
AT1G07740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   5e-11
AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    66   8e-11
AT5G15010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    66   9e-11
AT3G14580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   1e-10
AT5G25630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    65   1e-10
AT1G10910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT5G18390.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    65   2e-10
AT4G30825.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT5G25630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   2e-10
AT1G63630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    64   4e-10
AT1G08610.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    64   4e-10
AT5G11310.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   8e-10
AT4G36680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   9e-10
AT5G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    62   1e-09
AT1G77405.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   1e-09
AT3G22670.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   2e-09
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea...    61   2e-09
AT1G71060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    61   2e-09
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-...    61   2e-09
AT1G11900.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-09
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   4e-09
AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   5e-09
AT1G77150.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   6e-09
AT5G02830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   7e-09
AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT1G66345.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   1e-08
AT5G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT3G62470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   2e-08
AT5G47360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   3e-08
AT3G62540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   4e-08
AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR) ...    57   4e-08
AT1G10270.1 | Symbols: GRP23 | glutamine-rich protein 23 | chr1:...    56   7e-08
AT1G26500.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT5G48730.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-07
AT1G63320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   2e-07
AT1G05600.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   3e-07
AT1G05600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   3e-07
AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   4e-07
AT1G19520.1 | Symbols: NFD5 | pentatricopeptide (PPR) repeat-con...    53   5e-07
AT2G15980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   7e-07
AT4G21880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   9e-07
AT2G01390.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   9e-07
AT5G14080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   9e-07
AT2G18520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   1e-06
AT2G38420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   2e-06
AT4G01400.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    51   2e-06
AT5G03560.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   5e-06
AT5G27270.1 | Symbols: EMB976 | Tetratricopeptide repeat (TPR)-l...    50   6e-06

>AT1G08070.1 | Symbols: OTP82 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2514374-2516599 REVERSE
           LENGTH=741
          Length = 741

 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 275/652 (42%), Positives = 400/652 (61%), Gaps = 48/652 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +P L+ WN +   +  +     AL L+  M+   LLP+ +T P V+K C++  A +EG
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QIHG+VLK+G   D +V +SL++MY + G +  A KVFDK   RDVVS+ +LI GYA  
Sbjct: 154 QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASR 213

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVS--- 171
           G +E A KLFDE+P +D  +W A++ G A+ G  + A E+F  M      P +S++    
Sbjct: 214 GYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVV 273

Query: 172 -----------------W-------------NAMINGYMKSGKINLARQLFGQMPGRNLI 201
                            W             NA+I+ Y K G++  A  LF ++P +++I
Sbjct: 274 SACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           SWN++I GY     + EA+ LF+ +L+ G  P+ VT+LS L A + L  +  GRWIH ++
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393

Query: 262 VKHCFDLDGV-----LGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
            K    L GV     L TSLI+MY+KCG IE+A  VF +I +K L  W A+I G  MHG 
Sbjct: 394 DKR---LKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGR 450

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
           AD + +LF  MR+IG++P  ITF+G+L+ACSH G++D G   F  M  +YK+ P +EHYG
Sbjct: 451 ADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYG 510

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
           C++D+L  +G  ++A+ +I  M M P+ VIW SLL + + HGN+E+GE  A NLI+ +P+
Sbjct: 511 CMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPE 570

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQ 496
             G Y LLSNIYA+AG+W++V+  R ++ ++G+ K  GCS +E    ++ FI+GDK HP+
Sbjct: 571 NPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPR 630

Query: 497 TKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERR 556
            + IY  L EM   L+ AG VPDTS+VL                  +LAI+FGL++ +  
Sbjct: 631 NREIYGMLEEMEVLLEKAGFVPDTSEVL-QEMEEEWKEGALRHHSEKLAIAFGLISTKPG 689

Query: 557 TPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           T + I+KNLRVC +CH  TKL+S IY REII RD +RFHHF++G CSCND+W
Sbjct: 690 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 40/316 (12%)

Query: 134 PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMKSGK---IN 186
           P  D+      L  L  C  +++ R +  QM K     ++ + + +I   + S     + 
Sbjct: 26  PPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLP 85

Query: 187 LARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
            A  +F  +   NL+ WN+M  G+ L+   + A++L+  ++  GL+P+  T    L + +
Sbjct: 86  YAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCA 145

Query: 247 GLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS--------------------- 285
                  G+ IH  ++K   DLD  + TSLI MY + G                      
Sbjct: 146 KSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTA 205

Query: 286 ----------IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
                     IE+A  +F  I  K +  W A+I G    G   +ALELF +M +  ++P 
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPD 265

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII 395
             T + V++AC+  G ++ G +   + I+++     ++    L+D+  + G L+ A  + 
Sbjct: 266 ESTMVTVVSACAQSGSIELGRQ-VHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324

Query: 396 ESMPMRPNKVIWMSLL 411
           E +P + + + W +L+
Sbjct: 325 ERLPYK-DVISWNTLI 339


>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12712884-12715100 FORWARD
           LENGTH=738
          Length = 738

 Score =  496 bits (1276), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/647 (37%), Positives = 380/647 (58%), Gaps = 41/647 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQEGK 61
           KP   +WN +I  Y        ++  F  M+      P+ +T P +IK  + + ++  G+
Sbjct: 92  KPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQ 151

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
            +HG  +K   G D FV +SL++ Y   G++  A KVF  + ++DVVSWNS+I+G+ + G
Sbjct: 152 SLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKG 211

Query: 122 NVEVAMKLFDEMPSRDAFT---------------------------------------WT 142
           + + A++LF +M S D                                            
Sbjct: 212 SPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLAN 271

Query: 143 ALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
           A+LD   KCG +E A+ +FD M +K +V+W  M++GY  S     AR++   MP +++++
Sbjct: 272 AMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVA 331

Query: 203 WNSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           WN++IS Y+ NG+  EA+ +F E+ L++ +  + +T++S LSA + +  L  GRWIHS++
Sbjct: 332 WNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYI 391

Query: 262 VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
            KH   ++  + ++LI MYSKCG +E +  VF ++  + +  W+A+I GL MHG  ++A+
Sbjct: 392 KKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAV 451

Query: 322 ELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDI 381
           ++F +M+   +KP+ +TF  V  ACSH GLVDE    F  M + Y IVP  +HY C+VD+
Sbjct: 452 DMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDV 511

Query: 382 LCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCY 441
           L R+G+L++A   IE+MP+ P+  +W +LL + + H NL + E A   L+E +P   G +
Sbjct: 512 LGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAH 571

Query: 442 TLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIY 501
            LLSNIYA  GKW+ VS +R+ M+  G+ K+ GCS +E  G ++ F+ GD +HP ++ +Y
Sbjct: 572 VLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 631

Query: 502 AKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRI 561
            KL E+ +KLK  G+ P+ SQVL                  +LAI +GL++ E    IR+
Sbjct: 632 GKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVIRV 691

Query: 562 MKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           +KNLRVC DCH+V KL+S +Y REIIVRD  RFHHF+NG CSCNDFW
Sbjct: 692 IKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 203/410 (49%), Gaps = 47/410 (11%)

Query: 53  RLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYA--KWGEMGLARKVFDKMVDRDVVSW 110
           R  ++++ KQ HG++++ G   D +  S L  M A   +  +  ARKVFD++   +  +W
Sbjct: 39  RCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAW 98

Query: 111 NSLIDGYARNGNVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMP 165
           N+LI  YA   +  +++  F +M S      + +T+  L+   A+   +   + +   M 
Sbjct: 99  NTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG-MA 157

Query: 166 KKSSVS-----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
            KS+V       N++I+ Y   G ++ A ++F  +  ++++SWNSMI+G+   G   +A+
Sbjct: 158 VKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKAL 217

Query: 221 ELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMY 280
           ELF+ +  E +  SHVT++  LSA + +  L  GR + S++ ++  +++  L  ++++MY
Sbjct: 218 ELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMY 277

Query: 281 SKCGSIESALAVFKA-------------------------------IANKKLGHWTAIIV 309
           +KCGSIE A  +F A                               +  K +  W A+I 
Sbjct: 278 TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALIS 337

Query: 310 GLGMHGLADQALELFMEMR-RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKI 368
               +G  ++AL +F E++ +  MK + IT +  L+AC+  G ++ G +     I ++ I
Sbjct: 338 AYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG-RWIHSYIKKHGI 396

Query: 369 VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
                    L+ +  + G L++++ +  S+  R +  +W +++     HG
Sbjct: 397 RMNFHVTSALIHMYSKCGDLEKSREVFNSVEKR-DVFVWSAMIGGLAMHG 445



 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 110/206 (53%), Gaps = 10/206 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQM-LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +V+WN +IS Y  N + N+AL++F ++ L  ++  +  TL   +  C+++ A++ 
Sbjct: 324 MPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALEL 383

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+ IH Y+ K G   +  V S+L++MY+K G++  +R+VF+ +  RDV  W+++I G A 
Sbjct: 384 GRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAM 443

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV----- 170
           +G    A+ +F +M       +  T+T +    +  G V+ A  +F QM     +     
Sbjct: 444 HGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEK 503

Query: 171 SWNAMINGYMKSGKINLARQLFGQMP 196
            +  +++   +SG +  A +    MP
Sbjct: 504 HYACIVDVLGRSGYLEKAVKFIEAMP 529


>AT3G12770.1 | Symbols: MEF22 | mitochondrial editing factor  22 |
           chr3:4057027-4059193 REVERSE LENGTH=694
          Length = 694

 Score =  474 bits (1220), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 246/621 (39%), Positives = 373/621 (60%), Gaps = 18/621 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +P +  WN II  Y  N+   DALL++  M    + PD FT P ++K CS L  +Q G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFD--KMVDRDVVSWNSLIDGYA 118
           + +H  V ++GF  D FVQ+ L+ +YAK   +G AR VF+   + +R +VSW +++  YA
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 119 RNGNVEVAMKLFDEMPSRDAFT-WTAL---LDGLAKCGKVEAAREVFDQMPKKSS----- 169
           +NG    A+++F +M   D    W AL   L+       ++  R +   + K        
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258

Query: 170 --VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
             +S N M   Y K G++  A+ LF +M   NLI WN+MISGY  NG   EA+++F  ++
Sbjct: 259 LLISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMI 315

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
            + + P  ++I SA+SA + +  L   R ++ ++ +  +  D  + ++LI+M++KCGS+E
Sbjct: 316 NKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVE 375

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            A  VF    ++ +  W+A+IVG G+HG A +A+ L+  M R G+ P+ +TF+G+L AC+
Sbjct: 376 GARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN 435

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           H G+V EG   F+ M  ++KI P  +HY C++D+L RAGHL QA  +I+ MP++P   +W
Sbjct: 436 HSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVW 494

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            +LLS+ + H ++E+GEYAA  L   DP  TG Y  LSN+YAAA  WD+V+ VR  MKE+
Sbjct: 495 GALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEK 554

Query: 468 GVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXX 527
           G+ KD GCS VE RG+L  F VGDKSHP+ + I  ++  +  +LK  G V +    L   
Sbjct: 555 GLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASL-HD 613

Query: 528 XXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREII 587
                          R+AI++GL++  + TP+RI KNLR C +CHA TKL+S +  REI+
Sbjct: 614 LNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIV 673

Query: 588 VRDNSRFHHFKNGTCSCNDFW 608
           VRD +RFHHFK+G CSC D+W
Sbjct: 674 VRDTNRFHHFKDGVCSCGDYW 694



 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQIH  +L +G  F  F+ + L++  + +G++  AR+VFD +    +  WN++I GY+RN
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSW 172
            + + A+ ++  M     S D+FT+  LL   +    ++  R V  Q+ +          
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 173 NAMINGYMKSGKINLARQLFG--QMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           N +I  Y K  ++  AR +F    +P R ++SW +++S Y  NG  +EA+E+F  + K  
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P  V ++S L+A + L  L  GR IH+ +VK   +++  L  SL  MY+KCG + +A 
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F  + +  L  W A+I G   +G A +A+++F EM    ++P  I+    ++AC+  G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337

Query: 351 LVDEGNKCFDMM-INEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
            +++    ++ +  ++Y+    V     L+D+  + G ++ A+ + +    R + V+W +
Sbjct: 338 SLEQARSMYEYVGRSDYR--DDVFISSALIDMFAKCGSVEGARLVFDRTLDR-DVVVWSA 394

Query: 410 LLSSSRNHG 418
           ++     HG
Sbjct: 395 MIVGYGLHG 403



 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +I+     G I  ARQ+F  +P   +  WN++I GY  N  F +A+ ++  +    + P 
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
             T    L A SGL+ L  GR++H+ + +  FD D  +   LI +Y+KC  + SA  VF+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE 178

Query: 295 A--IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
              +  + +  WTAI+     +G   +ALE+F +MR++ +KP  +  + VLNA +    +
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDL 238

Query: 353 DEGNKCFDMMIN-EYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
            +G      ++    +I P +     L  +  + G +  AK + + M   PN ++W +++
Sbjct: 239 KQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVATAKILFDKMK-SPNLILWNAMI 295

Query: 412 SSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLS 445
           S    +G         H +I  D  PD     + +S
Sbjct: 296 SGYAKNGYAREAIDMFHEMINKDVRPDTISITSAIS 331


>AT4G02750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:1221116-1223461 REVERSE
           LENGTH=781
          Length = 781

 Score =  473 bits (1218), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 236/608 (38%), Positives = 368/608 (60%), Gaps = 9/608 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   VSWN ++S YV N +  +A +LF+   +  L+    +  C++ G  +   + E 
Sbjct: 183 MPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALV----SWNCLLGGFVKKKKIVEA 238

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q    +       D    ++++  YA+ G++  AR++FD+   +DV +W +++ GY +N
Sbjct: 239 RQFFDSMNVR----DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQN 294

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYM 180
             VE A +LFD+MP R+  +W A+L G  +  ++E A+E+FD MP ++  +WN MI GY 
Sbjct: 295 RMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYA 354

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           + GKI+ A+ LF +MP R+ +SW +MI+GY  +G   EA+ LF  + +EG   +  +  S
Sbjct: 355 QCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSS 414

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
           ALS  + +  L  G+ +H  +VK  ++    +G +L+ MY KCGSIE A  +FK +A K 
Sbjct: 415 ALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKD 474

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
           +  W  +I G   HG  + AL  F  M+R G+KP   T + VL+ACSH GLVD+G + F 
Sbjct: 475 IVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFY 534

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
            M  +Y ++P  +HY C+VD+L RAG L+ A N++++MP  P+  IW +LL +SR HGN 
Sbjct: 535 TMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNT 594

Query: 421 EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEH 480
           E+ E AA  +   +P+ +G Y LLSN+YA++G+W  V  +R  M+++GV K  G S +E 
Sbjct: 595 ELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEI 654

Query: 481 RGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXX 540
           + K + F VGD+ HP+   I+A L E+  ++K AG+V  TS VL                
Sbjct: 655 QNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVL-HDVEEEEKERMVRYH 713

Query: 541 XXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNG 600
             RLA+++G++ +    PIR++KNLRVC DCH   K ++ I GR II+RDN+RFHHFK+G
Sbjct: 714 SERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDG 773

Query: 601 TCSCNDFW 608
           +CSC D+W
Sbjct: 774 SCSCGDYW 781



 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 214/474 (45%), Gaps = 105/474 (22%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN+ IS Y+   R N+AL +F++M                    R  +V     I GY+ 
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRM-------------------PRWSSVSYNGMISGYLR 107

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
                                GE  LARK+FD+M +RD+VSWN +I GY RN N+  A +
Sbjct: 108 N--------------------GEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARE 147

Query: 129 LFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMIN----------- 177
           LF+ MP RD  +W  +L G A+ G V+ AR VFD+MP+K+ VSWNA+++           
Sbjct: 148 LFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEA 207

Query: 178 --------------------GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFL 217
                               G++K  KI  ARQ F  M  R+++SWN++I+GY  +G+  
Sbjct: 208 CMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267

Query: 218 EAMELF------EVLLKEGLMPSHVT------------ILSALSAVSGLAVL-GNGRWIH 258
           EA +LF      +V     ++  ++              +   + VS  A+L G  +   
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGER 327

Query: 259 SFMVKHCFDLDGVLGTS----LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMH 314
             M K  FD+      S    +I  Y++CG I  A  +F  +  +    W A+I G    
Sbjct: 328 MEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQS 387

Query: 315 GLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEH 374
           G + +AL LF++M R G + +  +F   L+ C+    ++ G +         ++V     
Sbjct: 388 GHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHG------RLVKGGYE 441

Query: 375 YGCLVD-----ILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
            GC V      + C+ G +++A ++ + M  + + V W ++++    HG  E+ 
Sbjct: 442 TGCFVGNALLLMYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVA 494



 Score =  132 bits (332), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 165/339 (48%), Gaps = 35/339 (10%)

Query: 104 DRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQ 163
           D D+  WN  I  Y R G    A+++F  MP   + ++  ++ G  + G+ E AR++FD+
Sbjct: 61  DSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDE 120

Query: 164 MPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF 223
           MP++  VSWN MI GY+++  +  AR+LF  MP R++ SWN+M+SGY  NG   +A  +F
Sbjct: 121 MPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVF 180

Query: 224 EVLLKEGLMPSHVTILSAL---SAVSGLAVLGNGRWIHSFMVKHC--------------- 265
           + + ++  + S   +LSA    S +    +L   R   + +  +C               
Sbjct: 181 DRMPEKNDV-SWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEAR 239

Query: 266 --FD----LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
             FD     D V   ++I  Y++ G I+ A  +F     + +  WTA++ G   + + ++
Sbjct: 240 QFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEE 299

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           A ELF +M     + + +++  +L        ++   + FD+M         V  +  ++
Sbjct: 300 ARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVM-----PCRNVSTWNTMI 350

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
               + G + +AKN+ + MP R + V W ++++     G
Sbjct: 351 TGYAQCGKISEAKNLFDKMPKR-DPVSWAAMIAGYSQSG 388


>AT5G66520.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26551879-26553741 FORWARD
           LENGTH=620
          Length = 620

 Score =  471 bits (1213), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/606 (39%), Positives = 347/606 (57%), Gaps = 62/606 (10%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P    WNL+I  +  +     +LLL+++ML      + +T P ++K CS L A +E  Q
Sbjct: 77  RPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQ 136

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           IH  + K+G+                               + DV + NSLI+ YA  GN
Sbjct: 137 IHAQITKLGY-------------------------------ENDVYAVNSLINSYAVTGN 165

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKS 182
            ++A  L                               FD++P+   VSWN++I GY+K+
Sbjct: 166 FKLAHLL-------------------------------FDRIPEPDDVSWNSVIKGYVKA 194

Query: 183 GKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL 242
           GK+++A  LF +M  +N ISW +MISGY       EA++LF  +    + P +V++ +AL
Sbjct: 195 GKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANAL 254

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG 302
           SA + L  L  G+WIHS++ K    +D VLG  LI+MY+KCG +E AL VFK I  K + 
Sbjct: 255 SACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQ 314

Query: 303 HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM 362
            WTA+I G   HG   +A+  FMEM+++G+KP+ ITF  VL ACS+ GLV+EG   F  M
Sbjct: 315 AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSM 374

Query: 363 INEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEI 422
             +Y + PT+EHYGC+VD+L RAG L +AK  I+ MP++PN VIW +LL + R H N+E+
Sbjct: 375 ERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIEL 434

Query: 423 GEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRG 482
           GE     LI  DP   G Y   +NI+A   KWDK +  R +MKE+GV K  GCS +   G
Sbjct: 435 GEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEG 494

Query: 483 KLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXX 542
             + F+ GD+SHP+ + I +K R M +KL+  G+VP+  ++L                  
Sbjct: 495 TTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSE 554

Query: 543 RLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTC 602
           +LAI++GL+  +  T IRIMKNLRVC DCH VTKL+S IY R+I++RD +RFHHF++G C
Sbjct: 555 KLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKC 614

Query: 603 SCNDFW 608
           SC D+W
Sbjct: 615 SCGDYW 620



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 128/245 (52%), Gaps = 12/245 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   +SW  +IS YV    + +AL LF +M + D+ PD  +L   +  C++L A+++G
Sbjct: 207 MAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K IH Y+ K     D  +   L++MYAK GEM  A +VF  +  + V +W +LI GYA +
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           G+   A+  F EM       +  T+TA+L   +  G VE  + +F  M +  ++      
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +  +++   ++G ++ A++   +MP + N + W +++   +++       E+ E+L+   
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILI--A 444

Query: 231 LMPSH 235
           + P H
Sbjct: 445 IDPYH 449



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 130/269 (48%), Gaps = 14/269 (5%)

Query: 157 AREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQM----PGRNLISWNSMISGYQL 212
           A+ VFD   +  +  WN MI G+  S +   +  L+ +M       N  ++ S++     
Sbjct: 68  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127

Query: 213 NGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL 272
              F E  ++   + K G       + +  S ++  AV GN +  H  +     + D V 
Sbjct: 128 LSAFEETTQIHAQITKLGY---ENDVYAVNSLINSYAVTGNFKLAH-LLFDRIPEPDDVS 183

Query: 273 GTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
             S+I+ Y K G ++ AL +F+ +A K    WT +I G     +  +AL+LF EM+   +
Sbjct: 184 WNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDV 243

Query: 333 KPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKI-VPTVEHYGC-LVDILCRAGHLQQ 390
           +P  ++    L+AC+  G +++G K     +N+ +I + +V   GC L+D+  + G +++
Sbjct: 244 EPDNVSLANALSACAQLGALEQG-KWIHSYLNKTRIRMDSV--LGCVLIDMYAKCGEMEE 300

Query: 391 AKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           A  + +++  +  +  W +L+S    HG+
Sbjct: 301 ALEVFKNIKKKSVQA-WTALISGYAYHGH 328


>AT4G14820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8507794-8510038 REVERSE
           LENGTH=722
          Length = 722

 Score =  470 bits (1209), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/650 (37%), Positives = 370/650 (56%), Gaps = 46/650 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P  + +N  +     +      +L ++++ H     D F+   ++K  S++ A+ EG ++
Sbjct: 74  PESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMEL 133

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           HG   KI    D FV++  ++MYA  G +  AR VFD+M  RDVV+WN++I+ Y R G V
Sbjct: 134 HGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193

Query: 124 EVAMKLFDEMPSR---------------------------------------DAFTWTAL 144
           + A KLF+EM                                          D    TAL
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253

Query: 145 LDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWN 204
           +   A  G ++ ARE F +M  ++     AM++GY K G+++ A+ +F Q   ++L+ W 
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKH 264
           +MIS Y  +    EA+ +FE +   G+ P  V++ S +SA + L +L   +W+HS +  +
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373

Query: 265 CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELF 324
             + +  +  +LI MY+KCG +++   VF+ +  + +  W+++I  L MHG A  AL LF
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
             M++  ++P+ +TF+GVL  CSH GLV+EG K F  M +EY I P +EHYGC+VD+  R
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGR 493

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLL 444
           A  L++A  +IESMP+  N VIW SL+S+ R HG LE+G++AA  ++E +PD  G   L+
Sbjct: 494 ANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLM 553

Query: 445 SNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKL 504
           SNIYA   +W+ V ++R +M+E+ V K+ G S ++  GK + F++GDK H Q+  IYAKL
Sbjct: 554 SNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKL 613

Query: 505 REMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTP------ 558
            E+  KLKLAG+VPD   VL                  +LA+ FGL+N E+         
Sbjct: 614 DEVVSKLKLAGYVPDCGSVL-VDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGV 672

Query: 559 IRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           IRI+KNLRVC DCH   KL+S +Y REIIVRD +RFH +KNG CSC D+W
Sbjct: 673 IRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 116/225 (51%), Gaps = 10/225 (4%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
            K  LV W  +IS YV +    +AL +F +M    + PD  ++  VI  C+ L  + + K
Sbjct: 305 EKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAK 364

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
            +H  +   G   +  + ++L+NMYAK G +   R VF+KM  R+VVSW+S+I+  + +G
Sbjct: 365 WVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHG 424

Query: 122 NVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----W 172
               A+ LF  M   +      T+  +L G +  G VE  +++F  M  + +++     +
Sbjct: 425 EASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHY 484

Query: 173 NAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRF 216
             M++ + ++  +  A ++   MP   N++ W S++S  +++G  
Sbjct: 485 GCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGEL 529


>AT1G11290.1 | Symbols: CRR22 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3791454-3793883 REVERSE
           LENGTH=809
          Length = 809

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/616 (39%), Positives = 367/616 (59%), Gaps = 10/616 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  LVSWN I++ Y  N  +  AL + + M   +L P   T+  V+   S L  +  G
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IHGY ++ GF     + ++LV+MYAK G +  AR++FD M++R+VVSWNS+ID Y +N
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 121 GNVEVAM----KLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFD---QMPKKSSVSW- 172
            N + AM    K+ DE       +    L   A  G +E  R +     ++    +VS  
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N++I+ Y K  +++ A  +FG++  R L+SWN+MI G+  NGR ++A+  F  +    + 
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P   T +S ++A++ L++  + +WIH  +++ C D +  + T+L++MY+KCG+I  A  +
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLI 495

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F  ++ + +  W A+I G G HG    ALELF EM++  +KP+ +TF+ V++ACSH GLV
Sbjct: 496 FDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLV 555

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
           + G KCF MM   Y I  +++HYG +VD+L RAG L +A + I  MP++P   ++ ++L 
Sbjct: 556 EAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLG 615

Query: 413 SSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           + + H N+   E AA  L E +PD  G + LL+NIY AA  W+KV  VR  M  +G+ K 
Sbjct: 616 ACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKT 675

Query: 473 AGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXX 532
            GCS+VE + +++ F  G  +HP +K IYA L ++   +K AG+VPDT+ VL        
Sbjct: 676 PGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL--GVENDV 733

Query: 533 XXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNS 592
                     +LAISFGLLN    T I + KNLRVC DCH  TK +S + GREI+VRD  
Sbjct: 734 KEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQ 793

Query: 593 RFHHFKNGTCSCNDFW 608
           RFHHFKNG CSC D+W
Sbjct: 794 RFHHFKNGACSCGDYW 809



 Score =  166 bits (420), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 199/367 (54%), Gaps = 10/367 (2%)

Query: 53  RLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNS 112
           R  +++E +QI   V K G   + F Q+ LV+++ ++G +  A +VF+ +  +  V +++
Sbjct: 46  RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105

Query: 113 LIDGYARNGNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKS 168
           ++ G+A+  +++ A++ F  M   D     + +T LL       ++   +E+   + K  
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165

Query: 169 -SVSWNAMI---NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFE 224
            S+   AM    N Y K  ++N AR++F +MP R+L+SWN++++GY  NG    A+E+ +
Sbjct: 166 FSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVK 225

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
            + +E L PS +TI+S L AVS L ++  G+ IH + ++  FD    + T+L++MY+KCG
Sbjct: 226 SMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCG 285

Query: 285 SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
           S+E+A  +F  +  + +  W ++I     +    +A+ +F +M   G+KP  ++ +G L+
Sbjct: 286 SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALH 345

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
           AC+  G ++ G     + + E  +   V     L+ + C+   +  A ++   +  R   
Sbjct: 346 ACADLGDLERGRFIHKLSV-ELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR-TL 403

Query: 405 VIWMSLL 411
           V W +++
Sbjct: 404 VSWNAMI 410


>AT3G57430.1 | Symbols: OTP84 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:21255731-21258403 REVERSE
           LENGTH=890
          Length = 890

 Score =  462 bits (1188), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/625 (38%), Positives = 371/625 (59%), Gaps = 23/625 (3%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           LV+WN ++S    N +  +AL   R+M+   + PD FT+  V+  CS L  ++ GK++H 
Sbjct: 267 LVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHA 326

Query: 66  YVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           Y LK G    + FV S+LV+MY    ++   R+VFD M DR +  WN++I GY++N + +
Sbjct: 327 YALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDK 386

Query: 125 VAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAM 175
            A+ LF  M        ++ T   ++    + G       +   + K+         N +
Sbjct: 387 EALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTL 446

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGR------FLEAMELFEVLLKE 229
           ++ Y + GKI++A ++FG+M  R+L++WN+MI+GY  +         L  M+  E  + +
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSK 506

Query: 230 G-----LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
           G     L P+ +T+++ L + + L+ L  G+ IH++ +K+    D  +G++L++MY+KCG
Sbjct: 507 GASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCG 566

Query: 285 SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
            ++ +  VF  I  K +  W  II+  GMHG   +A++L   M   G+KP+ +TFI V  
Sbjct: 567 CLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFA 626

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
           ACSH G+VDEG + F +M  +Y + P+ +HY C+VD+L RAG +++A  ++  MP   NK
Sbjct: 627 ACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNK 686

Query: 405 V-IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREM 463
              W SLL +SR H NLEIGE AA NLI+ +P+    Y LL+NIY++AG WDK + VR  
Sbjct: 687 AGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRN 746

Query: 464 MKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQV 523
           MKE+GV K+ GCS +EH  ++++F+ GD SHPQ++ +   L  + ++++  G+VPDTS V
Sbjct: 747 MKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCV 806

Query: 524 LXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYG 583
           L                  +LAI+FG+LN    T IR+ KNLRVCNDCH  TK +S I  
Sbjct: 807 L-HNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVD 865

Query: 584 REIIVRDNSRFHHFKNGTCSCNDFW 608
           REII+RD  RFH FKNGTCSC D+W
Sbjct: 866 REIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 121/421 (28%), Positives = 212/421 (50%), Gaps = 23/421 (5%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           W  ++   V ++   +A+L +  M+   + PD +  P ++K  + L  ++ GKQIH +V 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 69  KIGFGFDKF-VQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           K G+G D   V ++LVN+Y K G+ G   KVFD++ +R+ VSWNSLI         E+A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 128 KLF----DEMPSRDAFTWTALLDGLAKCGKVEA---AREVFDQMPKK---SSVSWNAMIN 177
           + F    DE     +FT  +++   +     E     ++V     +K   +S   N ++ 
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA 244

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K GK+  ++ L G   GR+L++WN+++S    N + LEA+E    ++ EG+ P   T
Sbjct: 245 MYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFT 304

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           I S L A S L +L  G+ +H++ +K+   D +  +G++L++MY  C  + S   VF  +
Sbjct: 305 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM 364

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRR-IGMKPHAITFIGVLNACSHKGLVDEG 355
            ++K+G W A+I G   +    +AL LF+ M    G+  ++ T  GV+ AC   G     
Sbjct: 365 FDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK 424

Query: 356 NKCFDMMI----NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
                 ++    +  + V        L+D+  R G +  A  I   M  R + V W +++
Sbjct: 425 EAIHGFVVKRGLDRDRFVQNT-----LMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478

Query: 412 S 412
           +
Sbjct: 479 T 479



 Score =  166 bits (419), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 210/438 (47%), Gaps = 29/438 (6%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRL---HAVQEGKQI 63
           VSWN +IS      +   AL  FR ML  ++ P  FTL  V+  CS L     +  GKQ+
Sbjct: 165 VSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQV 224

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H Y L+ G   + F+ ++LV MY K G++  ++ +      RD+V+WN+++    +N  +
Sbjct: 225 HAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQL 283

Query: 124 EVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----A 174
             A++   EM       D FT +++L   +    +   +E+     K  S+  N     A
Sbjct: 284 LEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSA 343

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE--GLM 232
           +++ Y    ++   R++F  M  R +  WN+MI+GY  N    EA+ LF + ++E  GL+
Sbjct: 344 LVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF-IGMEESAGLL 402

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
            +  T+   + A            IH F+VK   D D  +  +L++MYS+ G I+ A+ +
Sbjct: 403 ANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRI 462

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR-----------RIGMKPHAITFIG 341
           F  + ++ L  W  +I G       + AL L  +M+           R+ +KP++IT + 
Sbjct: 463 FGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMT 522

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
           +L +C+    + +G +     I    +   V     LVD+  + G LQ ++ + + +P +
Sbjct: 523 ILPSCAALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK 581

Query: 402 PNKVIWMSLLSSSRNHGN 419
            N + W  ++ +   HGN
Sbjct: 582 -NVITWNVIIMAYGMHGN 598



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 140/275 (50%), Gaps = 31/275 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD-----------LLPDGFTLPCVIK 49
           M    LV+WN +I+ YV +    DALLL  +M + +           L P+  TL  ++ 
Sbjct: 466 MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP 525

Query: 50  GCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVS 109
            C+ L A+ +GK+IH Y +K     D  V S+LV+MYAK G + ++RKVFD++  ++V++
Sbjct: 526 SCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVIT 585

Query: 110 WNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVF---- 161
           WN +I  Y  +GN + A+ L   M  +    +  T+ ++    +  G V+    +F    
Sbjct: 586 WNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645

Query: 162 -DQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI---SWNSMISGYQLNGRF- 216
            D   + SS  +  +++   ++G+I  A QL   MP R+     +W+S++   +++    
Sbjct: 646 PDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMP-RDFNKAGAWSSLLGASRIHNNLE 704

Query: 217 ---LEAMELFEVLLKEGLMPSHVTILSALSAVSGL 248
              + A  L ++   E  + SH  +L+ + + +GL
Sbjct: 705 IGEIAAQNLIQL---EPNVASHYVLLANIYSSAGL 736


>AT3G22690.2 | Symbols:  | INVOLVED IN: photosystem II assembly,
           regulation of chlorophyll biosynthetic process,
           photosystem I assembly, thylakoid membrane organization,
           RNA modification; LOCATED IN: chloroplast; EXPRESSED IN:
           13 plant structures; EXPRESSED DURING: LP.04 four leaves
           visible, 4 anthesis, petal differentiation and expansion
           stage, E expanded cotyledon stage, D bilateral stage;
           CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Tetratricopeptide repeat (TPR)-like
           superfamily protein (TAIR:AT2G29760.1). |
           chr3:8022006-8024534 REVERSE LENGTH=842
          Length = 842

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/649 (36%), Positives = 380/649 (58%), Gaps = 42/649 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDAL-LLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +VSW  +I  Y     + DA+ L FR +   ++ P+  T+ CVI  C++L  ++ 
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G++++ ++   G   +  + S+LV+MY K   + +A+++FD+    ++   N++   Y R
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 120 NGNVEVAMKLFDEM------PSRDAF-----------------------------TW--- 141
            G    A+ +F+ M      P R +                              +W   
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374

Query: 142 -TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
             AL+D   KC + + A  +FD+M  K+ V+WN+++ GY+++G+++ A + F  MP +N+
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434

Query: 201 ISWNSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
           +SWN++ISG      F EA+E+F  +  +EG+    VT++S  SA   L  L   +WI+ 
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
           ++ K+   LD  LGT+L++M+S+CG  ESA+++F ++ N+ +  WTA I  + M G A++
Sbjct: 495 YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER 554

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           A+ELF +M   G+KP  + F+G L ACSH GLV +G + F  M+  + + P   HYGC+V
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG 439
           D+L RAG L++A  +IE MPM PN VIW SLL++ R  GN+E+  YAA  +    P+ TG
Sbjct: 615 DLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTG 674

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKA 499
            Y LLSN+YA+AG+W+ ++ VR  MKE+G+ K  G S ++ RGK + F  GD+SHP+   
Sbjct: 675 SYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPN 734

Query: 500 IYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPI 559
           I A L E+S++    GHVPD S VL                  +LA+++GL++  + T I
Sbjct: 735 IEAMLDEVSQRASHLGHVPDLSNVL-MDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793

Query: 560 RIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           RI+KNLRVC+DCH+  K  S +Y REII+RDN+RFH+ + G CSC DFW
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 224/439 (51%), Gaps = 44/439 (10%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           T   +N +I  Y  +   N+A+LLF +M++  + PD +T P  +  C++  A   G QIH
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           G ++K+G+  D FVQ+SLV+ YA+ GE+  ARKVFD+M +R+VVSW S+I GYAR    +
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 125 VAMKLF-----DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----A 174
            A+ LF     DE  + ++ T   ++   AK   +E   +V+    + S +  N     A
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSA 276

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +++ YMK   I++A++LF +    NL   N+M S Y   G   EA+ +F +++  G+ P 
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC----------- 283
            +++LSA+S+ S L  +  G+  H +++++ F+    +  +LI+MY KC           
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396

Query: 284 --------------------GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALEL 323
                               G +++A   F+ +  K +  W  II GL    L ++A+E+
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 324 FMEMR-RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDIL 382
           F  M+ + G+    +T + + +AC H G +D   K     I +  I   V     LVD+ 
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLA-KWIYYYIEKNGIQLDVRLGTTLVDMF 515

Query: 383 CRAGHLQQAKNIIESMPMR 401
            R G  + A +I  S+  R
Sbjct: 516 SRCGDPESAMSIFNSLTNR 534


>AT3G26782.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9850594-9852682 FORWARD
           LENGTH=659
          Length = 659

 Score =  456 bits (1172), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/623 (39%), Positives = 369/623 (59%), Gaps = 18/623 (2%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           K  + SWN +I+    +  S +ALL F  M    L P   + PC IK CS L  +  GKQ
Sbjct: 38  KTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQ 97

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
            H      G+  D FV S+L+ MY+  G++  ARKVFD++  R++VSW S+I GY  NGN
Sbjct: 98  THQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGN 157

Query: 123 VEVAMKLF-----DEMPSRDAFTWTA--LLDGLAKCGKVEAA-------REVFDQMPKKS 168
              A+ LF     DE    DA    +  L+  ++ C +V A          V  +   + 
Sbjct: 158 ALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRG 217

Query: 169 SVSWNAMINGYMKSGK--INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
               N +++ Y K G+  + +AR++F Q+  ++ +S+NS++S Y  +G   EA E+F  L
Sbjct: 218 VSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL 277

Query: 227 LKEGLMP-SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +K  ++  + +T+ + L AVS    L  G+ IH  +++   + D ++GTS+I+MY KCG 
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGR 337

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           +E+A   F  + NK +  WTA+I G GMHG A +ALELF  M   G++P+ ITF+ VL A
Sbjct: 338 VETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAA 397

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV 405
           CSH GL  EG + F+ M   + + P +EHYGC+VD+L RAG LQ+A ++I+ M M+P+ +
Sbjct: 398 CSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSI 457

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
           IW SLL++ R H N+E+ E +   L E D    G Y LLS+IYA AG+W  V  VR +MK
Sbjct: 458 IWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMK 517

Query: 466 ERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLX 525
            RG++K  G S++E  G+++ F++GD+ HPQ + IY  L E+++KL  AG+V +TS V  
Sbjct: 518 NRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVC- 576

Query: 526 XXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGRE 585
                            +LAI+FG++N    + + ++KNLRVC+DCH V KL+S I  RE
Sbjct: 577 HDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDRE 636

Query: 586 IIVRDNSRFHHFKNGTCSCNDFW 608
            +VRD  RFHHFK+G CSC D+W
Sbjct: 637 FVVRDAKRFHHFKDGGCSCGDYW 659


>AT3G22690.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF1685 (InterPro:IPR012881),
           Pentatricopeptide repeat (InterPro:IPR002885); BEST
           Arabidopsis thaliana protein match is: Tetratricopeptide
           repeat (TPR)-like superfamily protein
           (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716
           proteins in 280 species: Archae - 2; Bacteria - 10;
           Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0;
           Other Eukaryotes - 904 (source: NCBI BLink). |
           chr3:8021347-8024534 REVERSE LENGTH=938
          Length = 938

 Score =  454 bits (1168), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/648 (36%), Positives = 379/648 (58%), Gaps = 42/648 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDAL-LLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +VSW  +I  Y     + DA+ L FR +   ++ P+  T+ CVI  C++L  ++ 
Sbjct: 195 MSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLET 254

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G++++ ++   G   +  + S+LV+MY K   + +A+++FD+    ++   N++   Y R
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314

Query: 120 NGNVEVAMKLFDEM------PSRDAF-----------------------------TW--- 141
            G    A+ +F+ M      P R +                              +W   
Sbjct: 315 QGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNI 374

Query: 142 -TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
             AL+D   KC + + A  +FD+M  K+ V+WN+++ GY+++G+++ A + F  MP +N+
Sbjct: 375 CNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNI 434

Query: 201 ISWNSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
           +SWN++ISG      F EA+E+F  +  +EG+    VT++S  SA   L  L   +WI+ 
Sbjct: 435 VSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYY 494

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
           ++ K+   LD  LGT+L++M+S+CG  ESA+++F ++ N+ +  WTA I  + M G A++
Sbjct: 495 YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER 554

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           A+ELF +M   G+KP  + F+G L ACSH GLV +G + F  M+  + + P   HYGC+V
Sbjct: 555 AIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMV 614

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG 439
           D+L RAG L++A  +IE MPM PN VIW SLL++ R  GN+E+  YAA  +    P+ TG
Sbjct: 615 DLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTG 674

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKA 499
            Y LLSN+YA+AG+W+ ++ VR  MKE+G+ K  G S ++ RGK + F  GD+SHP+   
Sbjct: 675 SYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPN 734

Query: 500 IYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPI 559
           I A L E+S++    GHVPD S VL                  +LA+++GL++  + T I
Sbjct: 735 IEAMLDEVSQRASHLGHVPDLSNVL-MDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTI 793

Query: 560 RIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDF 607
           RI+KNLRVC+DCH+  K  S +Y REII+RDN+RFH+ + G CSC DF
Sbjct: 794 RIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  204 bits (519), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 224/439 (51%), Gaps = 44/439 (10%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           T   +N +I  Y  +   N+A+LLF +M++  + PD +T P  +  C++  A   G QIH
Sbjct: 98  TCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIH 157

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           G ++K+G+  D FVQ+SLV+ YA+ GE+  ARKVFD+M +R+VVSW S+I GYAR    +
Sbjct: 158 GLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAK 217

Query: 125 VAMKLF-----DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----A 174
            A+ LF     DE  + ++ T   ++   AK   +E   +V+    + S +  N     A
Sbjct: 218 DAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSA 276

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +++ YMK   I++A++LF +    NL   N+M S Y   G   EA+ +F +++  G+ P 
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC----------- 283
            +++LSA+S+ S L  +  G+  H +++++ F+    +  +LI+MY KC           
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396

Query: 284 --------------------GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALEL 323
                               G +++A   F+ +  K +  W  II GL    L ++A+E+
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 324 FMEMR-RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDIL 382
           F  M+ + G+    +T + + +AC H G +D   K     I +  I   V     LVD+ 
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLA-KWIYYYIEKNGIQLDVRLGTTLVDMF 515

Query: 383 CRAGHLQQAKNIIESMPMR 401
            R G  + A +I  S+  R
Sbjct: 516 SRCGDPESAMSIFNSLTNR 534


>AT1G25360.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8894428-8896800 FORWARD
           LENGTH=790
          Length = 790

 Score =  450 bits (1157), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/678 (35%), Positives = 369/678 (54%), Gaps = 77/678 (11%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK--QIH 64
           V +N +I+ + HN+    A+ LF +M H    PD FT   V+ G + L A  E +  Q H
Sbjct: 114 VMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLA-LVADDEKQCVQFH 172

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGE----MGLARKVFDKMVDRDVVSW---------- 110
              LK G G+   V ++LV++Y+K       +  ARKVFD+++++D  SW          
Sbjct: 173 AAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKN 232

Query: 111 ----------------------NSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTAL 144
                                 N++I GY   G  + A+++   M S     D FT+ ++
Sbjct: 233 GYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSV 292

Query: 145 LDGLA----------------------------------KCGKVEAAREVFDQMPKKSSV 170
           +   A                                  KCGK + AR +F++MP K  V
Sbjct: 293 IRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLV 352

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           SWNA+++GY+ SG I  A+ +F +M  +N++SW  MISG   NG   E ++LF  + +EG
Sbjct: 353 SWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREG 412

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             P       A+ + + L    NG+  H+ ++K  FD     G +LI MY+KCG +E A 
Sbjct: 413 FEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEAR 472

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF+ +       W A+I  LG HG   +A++++ EM + G++P  IT + VL ACSH G
Sbjct: 473 QVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAG 532

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LVD+G K FD M   Y+I P  +HY  L+D+LCR+G    A+++IES+P +P   IW +L
Sbjct: 533 LVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEAL 592

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           LS  R HGN+E+G  AA  L    P+  G Y LLSN++AA G+W++V+ VR++M++RGV 
Sbjct: 593 LSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVK 652

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K+  CS +E   +++ F+V D SHP+ +A+Y  L+++ K+++  G+VPDTS VL      
Sbjct: 653 KEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESD 712

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       ++A++FGL+ +   T IRI KNLR C DCH   + LS +  R+II+RD
Sbjct: 713 GHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRD 772

Query: 591 NSRFHHFKNGTCSCNDFW 608
             RFHHF+NG CSC +FW
Sbjct: 773 RKRFHHFRNGECSCGNFW 790



 Score =  165 bits (417), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 180/354 (50%), Gaps = 48/354 (13%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           LV++N +IS YV+     +AL + R+M+   +  D FT P VI+ C+    +Q GKQ+H 
Sbjct: 251 LVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHA 310

Query: 66  YVLK---IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           YVL+     F FD    +SLV++Y K G+   AR +F+KM  +D+VSWN+L+ GY  +G+
Sbjct: 311 YVLRREDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGH 366

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK--------------- 167
           +  A  +F EM  ++  +W  ++ GLA+ G  E   ++F  M ++               
Sbjct: 367 IGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKS 426

Query: 168 -----------------------SSVSW-NAMINGYMKSGKINLARQLFGQMPGRNLISW 203
                                  SS+S  NA+I  Y K G +  ARQ+F  MP  + +SW
Sbjct: 427 CAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSW 486

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR-WIHSFMV 262
           N++I+    +G   EA++++E +LK+G+ P  +T+L+ L+A S   ++  GR +  S   
Sbjct: 487 NALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMET 546

Query: 263 KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH-WTAIIVGLGMHG 315
            +           LI++  + G    A +V +++  K     W A++ G  +HG
Sbjct: 547 VYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHG 600



 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/476 (20%), Positives = 198/476 (41%), Gaps = 112/476 (23%)

Query: 53  RLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNS 112
           R  ++Q  + +HG ++  GF     + + L+++Y K  E+  AR++FD++ + D ++  +
Sbjct: 26  RRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTT 85

Query: 113 LIDGYARNGNVEVAMKLFDEMP-------------------------------------S 135
           ++ GY  +G++ +A  +F++ P                                      
Sbjct: 86  MVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFK 145

Query: 136 RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-----NAMINGYMKSGK----IN 186
            D FT+ ++L GLA     E     F     KS   +     NA+++ Y K       ++
Sbjct: 146 PDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLH 205

Query: 187 LARQLFGQMPGRN--------------------------------LISWNSMISGYQLNG 214
            AR++F ++  ++                                L+++N+MISGY   G
Sbjct: 206 SARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRG 265

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
            + EA+E+   ++  G+     T  S + A +   +L  G+ +H+++++   D       
Sbjct: 266 FYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRR-EDFSFHFDN 324

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAI--------------------------- 307
           SL+ +Y KCG  + A A+F+ +  K L  W A+                           
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 308 ----IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
               I GL  +G  ++ L+LF  M+R G +P    F G + +C+  G    G + +   +
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ-YHAQL 443

Query: 364 NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
            +     ++     L+ +  + G +++A+ +  +MP   + V W +L+++   HG+
Sbjct: 444 LKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCL-DSVSWNALIAALGQHGH 498



 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 50/323 (15%)

Query: 144 LLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMP--GRNLI 201
           L+D   K  ++  AR++FD++ +   ++   M++GY  SG I LAR +F + P   R+ +
Sbjct: 55  LIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTV 114

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR----WI 257
            +N+MI+G+  N     A+ LF  +  EG  P + T  S L   +GLA++ +        
Sbjct: 115 MYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL---AGLALVADDEKQCVQF 171

Query: 258 HSFMVKHCFDLDGVLGTSLIEMYSKCGS----IESALAVFKAIANKKLGHWTAIIVGLGM 313
           H+  +K        +  +L+ +YSKC S    + SA  VF  I  K    WT ++ G   
Sbjct: 172 HAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVK 231

Query: 314 HGLAD--------------------------------QALELFMEMRRIGMKPHAITFIG 341
           +G  D                                +ALE+   M   G++    T+  
Sbjct: 232 NGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPS 291

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
           V+ AC+  GL+  G +    ++       +      LV +  + G   +A+ I E MP +
Sbjct: 292 VIRACATAGLLQLGKQVHAYVLRREDF--SFHFDNSLVSLYYKCGKFDEARAIFEKMPAK 349

Query: 402 PNKVIWMSLLSSSRNHGNLEIGE 424
            + V W +LLS   + G+  IGE
Sbjct: 350 -DLVSWNALLSGYVSSGH--IGE 369



 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 77/264 (29%), Positives = 125/264 (47%), Gaps = 23/264 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SW ++IS    N    + L LF  M      P  +     IK C+ L A   G
Sbjct: 377 MKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG 436

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q H  +LKIGF       ++L+ MYAK G +  AR+VF  M   D VSWN+LI    ++
Sbjct: 437 QQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQH 496

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA-- 174
           G+   A+ +++EM  +    D  T   +L   +  G V+  R+ FD M     +   A  
Sbjct: 497 GHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADH 556

Query: 175 ---MINGYMKSGKINLARQLFGQMPGRNLIS-WNSMISGYQLNGR----FLEAMELFEVL 226
              +I+   +SGK + A  +   +P +     W +++SG +++G      + A +LF   
Sbjct: 557 YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF--- 613

Query: 227 LKEGLMPSH---VTILSALSAVSG 247
              GL+P H     +LS + A +G
Sbjct: 614 ---GLIPEHDGTYMLLSNMHAATG 634


>AT1G09410.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:3035443-3037560 FORWARD LENGTH=705
          Length = 705

 Score =  446 bits (1147), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 364/615 (59%), Gaps = 21/615 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD-----LLPDGFTLPCVIKGCSRLH 55
           M +  +VSW  ++  YVHN + + A  LF +M   +     ++  GF     I    +L+
Sbjct: 105 MPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY 164

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLID 115
            +   K             D   ++S+++   K G +  AR++FD+M +R V++W +++ 
Sbjct: 165 EMIPDK-------------DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVT 211

Query: 116 GYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAM 175
           GY +N  V+ A K+FD MP +   +WT++L G  + G++E A E+F+ MP K  ++ NAM
Sbjct: 212 GYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIACNAM 271

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           I+G  + G+I  AR++F  M  RN  SW ++I  ++ NG  LEA++LF ++ K+G+ P+ 
Sbjct: 272 ISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTF 331

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T++S LS  + LA L +G+ +H+ +V+  FD+D  + + L+ MY KCG +  +  +F  
Sbjct: 332 PTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDR 391

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSHKGLVDE 354
             +K +  W +II G   HGL ++AL++F EM   G  KP+ +TF+  L+ACS+ G+V+E
Sbjct: 392 FPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEE 451

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G K ++ M + + + P   HY C+VD+L RAG   +A  +I+SM + P+  +W SLL + 
Sbjct: 452 GLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGAC 511

Query: 415 RNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAG 474
           R H  L++ E+ A  LIE +P+ +G Y LLSN+YA+ G+W  V+ +R++MK R V K  G
Sbjct: 512 RTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPG 571

Query: 475 CSIVEHRGKLNRFIVGD-KSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXX 533
           CS  E   K++ F  G   SHP+ ++I   L E+   L+ AG+ PD S  L         
Sbjct: 572 CSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYAL-HDVDEEEK 630

Query: 534 XXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSR 593
                    RLA+++ LL +    PIR+MKNLRVC+DCH   K++S +  REII+RD +R
Sbjct: 631 VNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANR 690

Query: 594 FHHFKNGTCSCNDFW 608
           FHHF+NG CSC D+W
Sbjct: 691 FHHFRNGECSCKDYW 705



 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 194/395 (49%), Gaps = 61/395 (15%)

Query: 87  AKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLD 146
           ++ G++  ARK+FD    + + SWNS++ GY  N     A KLFDEMP R+  +W  L+ 
Sbjct: 28  SRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVS 87

Query: 147 GLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSM 206
           G  K G+++ AR+VFD MP+++ VSW A++ GY+ +GK+++A  LF +MP +N +SW  M
Sbjct: 88  GYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVM 147

Query: 207 ISGYQLNGRFLEAMELFEV---------------LLKEGLMPSHVTILSALSAVSGLA-- 249
           + G+  +GR  +A +L+E+               L KEG +     I   +S  S +   
Sbjct: 148 LIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWT 207

Query: 250 --VLGNGRWIHSFMVKHCFDL----DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH 303
             V G G+       +  FD+      V  TS++  Y + G IE A  +F+ +  K +  
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIA 267

Query: 304 WTAIIVGLGM-------------------------------HGLADQALELFMEMRRIGM 332
             A+I GLG                                +G   +AL+LF+ M++ G+
Sbjct: 268 CNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGV 327

Query: 333 KPHAITFIGVLNACSHKGLVDEGNKCFDMMIN-EYKIVPTVEHYGCLVDILCRAGHLQQA 391
           +P   T I +L+ C+    +  G +    ++  ++ +   V     L+ +  + G L ++
Sbjct: 328 RPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDV--DVYVASVLMTMYIKCGELVKS 385

Query: 392 KNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYA 426
           K I +  P + + ++W S++S   +HG   +GE A
Sbjct: 386 KLIFDRFPSK-DIIMWNSIISGYASHG---LGEEA 416



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 129/255 (50%), Gaps = 17/255 (6%)

Query: 148 LAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMI 207
           L++ GK+  AR++FD    KS  SWN+M+ GY  +     AR+LF +MP RN+ISWN ++
Sbjct: 27  LSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLV 86

Query: 208 SGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD 267
           SGY  NG   EA ++F+      LMP    ++S  + V G    G      S   K   +
Sbjct: 87  SGYMKNGEIDEARKVFD------LMPER-NVVSWTALVKGYVHNGKVDVAESLFWKMP-E 138

Query: 268 LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM 327
            + V  T ++  + + G I+ A  +++ I +K     T++I GL   G  D+A E+F EM
Sbjct: 139 KNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEM 198

Query: 328 RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGH 387
                +   IT+  ++        VD+  K FD+M  + ++  T    G +     + G 
Sbjct: 199 S----ERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYV-----QNGR 249

Query: 388 LQQAKNIIESMPMRP 402
           ++ A+ + E MP++P
Sbjct: 250 IEDAEELFEVMPVKP 264



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 133/305 (43%), Gaps = 41/305 (13%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N  I    + GKI+ AR+LF     +++ SWNSM++GY  N    +A +LF+       M
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDE------M 74

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL----DGVLGTSLIEMYSKCGSIES 288
           P    I+S    VSG   + NG    +   +  FDL    + V  T+L++ Y   G ++ 
Sbjct: 75  PDR-NIISWNGLVSGY--MKNGEIDEA---RKVFDLMPERNVVSWTALVKGYVHNGKVDV 128

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHA--ITFIGVLNAC 346
           A ++F  +  K    WT +++G    G  D A +L+       M P    I    +++  
Sbjct: 129 AESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLY------EMIPDKDNIARTSMIHGL 182

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPT--VEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
             +G VDE  + FD M     I  T  V  YG       +   +  A+ I + MP +  +
Sbjct: 183 CKEGRVDEAREIFDEMSERSVITWTTMVTGYG-------QNNRVDDARKIFDVMPEK-TE 234

Query: 405 VIWMSLLSSSRNHGNLEIGEYAAHNLIEADP--DATGCYTLLSNIYAAAGKWDKVSHVRE 462
           V W S+L     +G +E     A  L E  P      C  ++S +    G+  K   V +
Sbjct: 235 VSWTSMLMGYVQNGRIE----DAEELFEVMPVKPVIACNAMISGL-GQKGEIAKARRVFD 289

Query: 463 MMKER 467
            MKER
Sbjct: 290 SMKER 294


>AT4G33990.1 | Symbols: EMB2758 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:16290141-16292612
           REVERSE LENGTH=823
          Length = 823

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 246/617 (39%), Positives = 359/617 (58%), Gaps = 27/617 (4%)

Query: 8   SWNLIISCYVHNHRSNDALLL---FRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           SWN +IS Y  +  + +AL L    R M       D  T+  ++  C+       G  IH
Sbjct: 218 SWNAMISGYCQSGNAKEALTLSNGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIH 270

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
            Y +K G   + FV + L+++YA++G +   +KVFD+M  RD++SWNS+I  Y  N    
Sbjct: 271 SYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPL 330

Query: 125 VAMKLFDEMP-SR---DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-------- 172
            A+ LF EM  SR   D  T  +L   L++ G + A R V     +K    W        
Sbjct: 331 RAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG---WFLEDITIG 387

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG-L 231
           NA++  Y K G ++ AR +F  +P  ++ISWN++ISGY  NG   EA+E++ ++ +EG +
Sbjct: 388 NAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEI 447

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
             +  T +S L A S    L  G  +H  ++K+   LD  + TSL +MY KCG +E AL+
Sbjct: 448 AANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALS 507

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           +F  I       W  +I   G HG  ++A+ LF EM   G+KP  ITF+ +L+ACSH GL
Sbjct: 508 LFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGL 567

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           VDEG  CF+MM  +Y I P+++HYGC+VD+  RAG L+ A   I+SM ++P+  IW +LL
Sbjct: 568 VDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALL 627

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           S+ R HGN+++G+ A+ +L E +P+  G + LLSN+YA+AGKW+ V  +R +   +G+ K
Sbjct: 628 SACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRK 687

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXX 531
             G S +E   K+  F  G+++HP  + +Y +L  +  KLK+ G+VPD   VL       
Sbjct: 688 TPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVL-QDVEDD 746

Query: 532 XXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDN 591
                      RLAI+F L+    +T IRI KNLRVC DCH+VTK +S I  REIIVRD+
Sbjct: 747 EKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDS 806

Query: 592 SRFHHFKNGTCSCNDFW 608
           +RFHHFKNG CSC D+W
Sbjct: 807 NRFHHFKNGVCSCGDYW 823



 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 149/485 (30%), Positives = 253/485 (52%), Gaps = 23/485 (4%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQ-MLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           +WNL+IS Y     S++ +  F   ML   L PD  T P V+K C     V +G +IH  
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCL 175

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
            LK GF +D +V +SL+++Y+++  +G AR +FD+M  RD+ SWN++I GY ++GN + A
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235

Query: 127 MKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW----NAMINGYMKS 182
           + L + + + D+ T  +LL    + G       +     K    S     N +I+ Y + 
Sbjct: 236 LTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEF 295

Query: 183 GKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL 242
           G++   +++F +M  R+LISWNS+I  Y+LN + L A+ LF+ +    + P  +T++S  
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLA 355

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIESALAVFKAIANKKL 301
           S +S L  +   R +  F ++  + L+ + +G +++ MY+K G ++SA AVF  + N  +
Sbjct: 356 SILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDV 415

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSHKGLVDEGNKCFD 360
             W  II G   +G A +A+E++  M   G +  +  T++ VL ACS  G + +G K   
Sbjct: 416 ISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHG 475

Query: 361 MMINE--YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
            ++    Y  V  V     L D+  + G L+ A ++   +P R N V W +L++    HG
Sbjct: 476 RLLKNGLYLDVFVVTS---LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHG 531

Query: 419 NLEIGEYAAHNLIE--ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK-ERGV---LKD 472
           + E        +++    PD     TLLS   + +G  D+     EMM+ + G+   LK 
Sbjct: 532 HGEKAVMLFKEMLDEGVKPDHITFVTLLSAC-SHSGLVDEGQWCFEMMQTDYGITPSLKH 590

Query: 473 AGCSI 477
            GC +
Sbjct: 591 YGCMV 595



 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 175/338 (51%), Gaps = 28/338 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M+   L+SWN II  Y  N +   A+ LF++M    + PD  TL  +    S+L  ++  
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 367

Query: 61  KQIHGYVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           + + G+ L+ G F  D  + +++V MYAK G +  AR VF+ + + DV+SWN++I GYA+
Sbjct: 368 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQ 427

Query: 120 NGNVEVAMKLFDEMPSRDAF-----TWTALLDGLAKCGKVEAAREVFDQMPKK----SSV 170
           NG    A+++++ M           TW ++L   ++ G +    ++  ++ K        
Sbjct: 428 NGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVF 487

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
              ++ + Y K G++  A  LF Q+P  N + WN++I+ +  +G   +A+ LF+ +L EG
Sbjct: 488 VVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG 547

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL---DGVLGTSL------IEMYS 281
           + P H+T ++ LSA S   ++  G+W        CF++   D  +  SL      ++MY 
Sbjct: 548 VKPDHITFVTLLSACSHSGLVDEGQW--------CFEMMQTDYGITPSLKHYGCMVDMYG 599

Query: 282 KCGSIESALAVFKAIA-NKKLGHWTAIIVGLGMHGLAD 318
           + G +E+AL   K+++       W A++    +HG  D
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVD 637



 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 154/378 (40%), Gaps = 73/378 (19%)

Query: 78  VQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFD------ 131
           + + LVN+Y   G + LAR  FD + +RDV +WN +I GY R GN    ++ F       
Sbjct: 88  ISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSS 147

Query: 132 -------EMPSR------------------------DAFTWTALLDGLAKCGKVEAAREV 160
                    PS                         D +   +L+   ++   V  AR +
Sbjct: 148 GLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207

Query: 161 FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
           FD+MP +   SWNAMI+GY +SG    A  L                     NG  L AM
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLS--------------------NG--LRAM 245

Query: 221 ELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMY 280
           +              VT++S LSA +       G  IHS+ +KH  + +  +   LI++Y
Sbjct: 246 D-------------SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 281 SKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
           ++ G +     VF  +  + L  W +II    ++    +A+ LF EMR   ++P  +T I
Sbjct: 293 AEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLI 352

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM 400
            + +  S  G +          + +   +  +     +V +  + G +  A+ +   +P 
Sbjct: 353 SLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP- 411

Query: 401 RPNKVIWMSLLSSSRNHG 418
             + + W +++S    +G
Sbjct: 412 NTDVISWNTIISGYAQNG 429



 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 9/161 (5%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V WN +I+C+  +     A++LF++ML   + PD  T   ++  CS    V EG+     
Sbjct: 518 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE- 576

Query: 67  VLKIGFGFDKFVQ--SSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGYARNGNV 123
           +++  +G    ++    +V+MY + G++  A K    M +  D   W +L+     +GNV
Sbjct: 577 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNV 636

Query: 124 EV----AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREV 160
           ++    +  LF+  P    +    L +  A  GK E   E+
Sbjct: 637 DLGKIASEHLFEVEPEHVGYH-VLLSNMYASAGKWEGVDEI 676


>AT3G49170.1 | Symbols: EMB2261 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr3:18226954-18229600
           REVERSE LENGTH=850
          Length = 850

 Score =  443 bits (1139), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/625 (37%), Positives = 362/625 (57%), Gaps = 20/625 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+W L+I+  +      +A+  F  M+      D FTL  V   C+ L  +  G
Sbjct: 229 MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLG 288

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKW---GEMGLARKVFDKMVDRDVVSWNSLIDGY 117
           KQ+H + ++ G   D  V+ SLV+MYAK    G +   RKVFD+M D  V+SW +LI GY
Sbjct: 289 KQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY 346

Query: 118 ARNGNVEV-AMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK---- 167
            +N N+   A+ LF EM ++     + FT+++              ++V  Q  K+    
Sbjct: 347 MKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLAS 406

Query: 168 -SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
            SSV+ N++I+ ++KS ++  A++ F  +  +NL+S+N+ + G   N  F +A +L   +
Sbjct: 407 NSSVA-NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEI 465

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
            +  L  S  T  S LS V+ +  +  G  IHS +VK     +  +  +LI MYSKCGSI
Sbjct: 466 TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSI 525

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           ++A  VF  + N+ +  WT++I G   HG A + LE F +M   G+KP+ +T++ +L+AC
Sbjct: 526 DTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSAC 585

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
           SH GLV EG + F+ M  ++KI P +EHY C+VD+LCRAG L  A   I +MP + + ++
Sbjct: 586 SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLV 645

Query: 407 WMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
           W + L + R H N E+G+ AA  ++E DP+    Y  LSNIYA AGKW++ + +R  MKE
Sbjct: 646 WRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKE 705

Query: 467 RGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQV--- 523
           R ++K+ GCS +E   K+++F VGD +HP    IY +L  +  ++K  G+VPDT  V   
Sbjct: 706 RNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHK 765

Query: 524 LXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYG 583
           L                  ++A++FGL++  +  P+R+ KNLRVC DCH   K +S + G
Sbjct: 766 LEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSG 825

Query: 584 REIIVRDNSRFHHFKNGTCSCNDFW 608
           REI++RD +RFHHFK+G CSCND+W
Sbjct: 826 REIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  126 bits (317), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 118/484 (24%), Positives = 210/484 (43%), Gaps = 56/484 (11%)

Query: 40  DGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVF 99
           D  T   ++K C R    + GK +H  +++     D  + +SL+++Y+K G+   A  VF
Sbjct: 61  DSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVF 120

Query: 100 DKMV---DRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCG 152
           + M     RDVVSW++++  Y  NG    A+K+F E        + + +TA++   +   
Sbjct: 121 ETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSD 180

Query: 153 KVEAAREVFDQMPKKSSVSWN-----AMINGYMK-SGKINLARQLFGQMPGRNLISWNSM 206
            V   R     + K      +     ++I+ ++K       A ++F +M   N+++W  M
Sbjct: 181 FVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLM 240

Query: 207 ISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF 266
           I+     G   EA+  F  ++  G      T+ S  SA + L  L  G+ +HS+ ++   
Sbjct: 241 ITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGL 300

Query: 267 DLDGVLGTSLIEMYSKC---GSIESALAVFKAIANKKLGHWTAIIVGLGMH-GLADQALE 322
             D  +  SL++MY+KC   GS++    VF  + +  +  WTA+I G   +  LA +A+ 
Sbjct: 301 VDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAIN 358

Query: 323 LFMEMRRIG-MKPHAITFIGVLNACSH----------------KGLVDE---GNKCFDMM 362
           LF EM   G ++P+  TF     AC +                +GL       N    M 
Sbjct: 359 LFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMF 418

Query: 363 INEYKI-----------VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP---NKVIWM 408
           +   ++              +  Y   +D  CR  + +QA  ++  +  R    +   + 
Sbjct: 419 VKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFA 478

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIE--ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
           SLLS   N G++  GE     +++     +   C  L+S +Y+  G  D  S V   M+ 
Sbjct: 479 SLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALIS-MYSKCGSIDTASRVFNFMEN 537

Query: 467 RGVL 470
           R V+
Sbjct: 538 RNVI 541



 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/299 (20%), Positives = 135/299 (45%), Gaps = 17/299 (5%)

Query: 219 AMELFEVLLKEGLMP-SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLI 277
           A+   +++ ++G+ P   VT  S L +         G+ +H+ +++   + D VL  SLI
Sbjct: 45  AVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLI 104

Query: 278 EMYSKCGSIESALAVFKAI---ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
            +YSK G    A  VF+ +     + +  W+A++   G +G    A+++F+E   +G+ P
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVP 164

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGC-LVDILCRA-GHLQQAK 392
           +   +  V+ ACS+   V  G      ++        V   GC L+D+  +     + A 
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDV-CVGCSLIDMFVKGENSFENAY 223

Query: 393 NIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAG 452
            + + M    N V W  +++     G          +++ +  ++   +T LS++++A  
Sbjct: 224 KVFDKMS-ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK-FT-LSSVFSACA 280

Query: 453 KWDKVSHVREMMK---ERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMS 508
           + + +S  +++       G++ D  CS+V+   K +     D S    + ++ ++ + S
Sbjct: 281 ELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCS----ADGSVDDCRKVFDRMEDHS 335


>AT3G62890.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:23246168-23247973 FORWARD
           LENGTH=573
          Length = 573

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 358/605 (59%), Gaps = 63/605 (10%)

Query: 9   WNLIISCYVHNHRS---NDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           WN+II   VHN  S   +  + ++ +M +H + PD  T P ++        +  G++ H 
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHA 86

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            +L  G   D FV++SL+NMY+  G++  A++VFD    +D+ +WNS+++ YA+ G ++ 
Sbjct: 87  QILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDD 146

Query: 126 AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKI 185
           A KLFDEMP R+  +W+ L++G   CGK + A ++F +M                     
Sbjct: 147 ARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM--------------------- 185

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV 245
                   Q+P  N                     E F       + P+  T+ + LSA 
Sbjct: 186 --------QLPKPN---------------------EAF-------VRPNEFTMSTVLSAC 209

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK-LGHW 304
             L  L  G+W+H+++ K+  ++D VLGT+LI+MY+KCGS+E A  VF A+ +KK +  +
Sbjct: 210 GRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAY 269

Query: 305 TAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           +A+I  L M+GL D+  +LF EM     + P+++TF+G+L AC H+GL++EG   F MMI
Sbjct: 270 SAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMI 329

Query: 364 NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
            E+ I P+++HYGC+VD+  R+G +++A++ I SMPM P+ +IW SLLS SR  G+++  
Sbjct: 330 EEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTC 389

Query: 424 EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGK 483
           E A   LIE DP  +G Y LLSN+YA  G+W +V  +R  M+ +G+ K  GCS VE  G 
Sbjct: 390 EGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGV 449

Query: 484 LNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXR 543
           ++ F+VGD+S  +++ IYA L E+ ++L+ AG+V DT +VL                  +
Sbjct: 450 VHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVL-LDLNEKDKEIALSYHSEK 508

Query: 544 LAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCS 603
           LAI+F L+     TP+RI+KNLR+C DCH V K++S ++ REI+VRD +RFHHF++G+CS
Sbjct: 509 LAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCS 568

Query: 604 CNDFW 608
           C DFW
Sbjct: 569 CRDFW 573



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 147/299 (49%), Gaps = 26/299 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQML-----HHDLLPDGFTLPCVIKGCSRLH 55
           M +  ++SW+ +I+ YV   +  +AL LFR+M         + P+ FT+  V+  C RL 
Sbjct: 154 MPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLG 213

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLI 114
           A+++GK +H Y+ K     D  + ++L++MYAK G +  A++VF+ +   +DV +++++I
Sbjct: 214 ALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMI 273

Query: 115 DGYARNGNVEVAMKLFDEMPSRD-----AFTWTALLDGLAKCGKVEAAREVFDQMPKKSS 169
              A  G  +   +LF EM + D     + T+  +L      G +   +  F  M ++  
Sbjct: 274 CCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFG 333

Query: 170 VS-----WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELF 223
           ++     +  M++ Y +SG I  A      MP   +++ W S++SG ++ G         
Sbjct: 334 ITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGAL 393

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG---VLGTSLIEM 279
           + L++   M S   +L  LS V        GRW+    ++H  ++ G   V G S +E+
Sbjct: 394 KRLIELDPMNSGAYVL--LSNVYA----KTGRWMEVKCIRHEMEVKGINKVPGCSYVEV 446


>AT4G13650.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily
            protein | chr4:7939611-7942898 REVERSE LENGTH=1064
          Length = 1064

 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 360/612 (58%), Gaps = 11/612 (1%)

Query: 6    LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
            +V WN+++  Y       ++  +FRQM   +++P+ +T P ++K C RL  ++ G+QIH 
Sbjct: 455  VVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHS 514

Query: 66   YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
             ++K  F  + +V S L++MYAK G++  A  +  +   +DVVSW ++I GY +    + 
Sbjct: 515  QIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 574

Query: 126  AMKLFDEMPSRDAFT-WTALLDGLAKCGKVEAAREVFDQMPKKSSVS--------WNAMI 176
            A+  F +M  R   +    L + ++ C  ++A +E   Q+  ++ VS         NA++
Sbjct: 575  ALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEG-QQIHAQACVSGFSSDLPFQNALV 633

Query: 177  NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
              Y + GKI  +   F Q    + I+WN+++SG+Q +G   EA+ +F  + +EG+  ++ 
Sbjct: 634  TLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNF 693

Query: 237  TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
            T  SA+ A S  A +  G+ +H+ + K  +D +  +  +LI MY+KCGSI  A   F  +
Sbjct: 694  TFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEV 753

Query: 297  ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
            + K    W AII     HG   +AL+ F +M    ++P+ +T +GVL+ACSH GLVD+G 
Sbjct: 754  STKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGI 813

Query: 357  KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
              F+ M +EY + P  EHY C+VD+L RAG L +AK  I+ MP++P+ ++W +LLS+   
Sbjct: 814  AYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVV 873

Query: 417  HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
            H N+EIGE+AAH+L+E +P+ +  Y LLSN+YA + KWD     R+ MKE+GV K+ G S
Sbjct: 874  HKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQS 933

Query: 477  IVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXX 536
             +E +  ++ F VGD++HP    I+   ++++K+    G+V D   +L            
Sbjct: 934  WIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLL-NELQHEQKDPI 992

Query: 537  XXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHH 596
                  +LAISFGLL++    PI +MKNLRVCNDCHA  K +S +  REIIVRD  RFHH
Sbjct: 993  IFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHH 1052

Query: 597  FKNGTCSCNDFW 608
            F+ G CSC D+W
Sbjct: 1053 FEGGACSCKDYW 1064



 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 114/422 (27%), Positives = 197/422 (46%), Gaps = 10/422 (2%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           SW  +IS    N    +A+ LF  M    ++P  +    V+  C ++ +++ G+Q+HG V
Sbjct: 255 SWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLV 314

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           LK+GF  D +V ++LV++Y   G +  A  +F  M  RD V++N+LI+G ++ G  E AM
Sbjct: 315 LKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAM 374

Query: 128 KLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN----AMINGY 179
           +LF  M       D+ T  +L+   +  G +   +++     K    S N    A++N Y
Sbjct: 375 ELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLY 434

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
            K   I  A   F +    N++ WN M+  Y L      +  +F  +  E ++P+  T  
Sbjct: 435 AKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYP 494

Query: 240 SALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK 299
           S L     L  L  G  IHS ++K  F L+  + + LI+MY+K G +++A  +    A K
Sbjct: 495 SILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554

Query: 300 KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCF 359
            +  WT +I G   +   D+AL  F +M   G++   +     ++AC+    + EG +  
Sbjct: 555 DVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614

Query: 360 DMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
                       +     LV +  R G ++++    E      N + W +L+S  +  GN
Sbjct: 615 AQACVS-GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN-IAWNALVSGFQQSGN 672

Query: 420 LE 421
            E
Sbjct: 673 NE 674



 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 205/427 (48%), Gaps = 12/427 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   V++N +I+          A+ LF++M    L PD  TL  ++  CS    +  G
Sbjct: 349 MSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRG 408

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+H Y  K+GF  +  ++ +L+N+YAK  ++  A   F +    +VV WN ++  Y   
Sbjct: 409 QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468

Query: 121 GNVEVAMKLFDEMPSRD----AFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA-- 174
            ++  + ++F +M   +     +T+ ++L    + G +E   ++  Q+  K++   NA  
Sbjct: 469 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII-KTNFQLNAYV 527

Query: 175 ---MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
              +I+ Y K GK++ A  +  +  G++++SW +MI+GY       +A+  F  +L  G+
Sbjct: 528 CSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGI 587

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
               V + +A+SA +GL  L  G+ IH+      F  D     +L+ +YS+CG IE +  
Sbjct: 588 RSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYL 647

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
            F+         W A++ G    G  ++AL +F+ M R G+  +  TF   + A S    
Sbjct: 648 AFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETAN 707

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           + +G K    +I +       E    L+ +  + G +  A+     +  + N+V W +++
Sbjct: 708 MKQG-KQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAII 765

Query: 412 SSSRNHG 418
           ++   HG
Sbjct: 766 NAYSKHG 772



 Score =  145 bits (366), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 122/462 (26%), Positives = 214/462 (46%), Gaps = 46/462 (9%)

Query: 39  PDGFTLPCVIKGCSRLH-AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARK 97
           P+  TL  +++GC + + ++ EG+++H  +LK+G   +  +   L + Y   G++  A K
Sbjct: 82  PNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFK 141

Query: 98  VFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDG-LAKCGKVEA 156
           VFD+M +R + +WN +I   A    +     LF  M S +         G L  C     
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 157 AREVFDQMP--------KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMIS 208
           A +V +Q+         + S+V  N +I+ Y ++G ++LAR++F  +  ++  SW +MIS
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261

Query: 209 GYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL 268
           G   N    EA+ LF  +   G+MP+     S LSA   +  L  G  +H  ++K  F  
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
           D  +  +L+ +Y   G++ SA  +F  ++ +    +  +I GL   G  ++A+ELF  M 
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGN--------------------------KCFDMM 362
             G++P + T   ++ ACS  G +  G                           KC D+ 
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 363 IN-EYKIVPTVEHYGCLVDILCRAGHLQQAKN---IIESMPMR---PNKVIWMSLLSSSR 415
              +Y +   VE+      +L   G L   +N   I   M +    PN+  + S+L +  
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 416 NHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAGKWD 455
             G+LE+GE     +I+ +   +A  C ++L ++YA  GK D
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVC-SVLIDMYAKLGKLD 542


>AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10304850-10307465 FORWARD
           LENGTH=871
          Length = 871

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/618 (37%), Positives = 371/618 (60%), Gaps = 12/618 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SWN II+ YV N  +   L +F QML   +  D  T+  V  GC+    +  G
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H   +K  F  +    ++L++MY+K G++  A+ VF +M DR VVS+ S+I GYAR 
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 375

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW---- 172
           G    A+KLF+EM     S D +T TA+L+  A+   ++  + V + + K++ + +    
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI-KENDLGFDIFV 434

Query: 173 -NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG- 230
            NA+++ Y K G +  A  +F +M  +++ISWN++I GY  N    EA+ LF +LL+E  
Sbjct: 435 SNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKR 494

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             P   T+   L A + L+    GR IH +++++ +  D  +  SL++MY+KCG++  A 
Sbjct: 495 FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAH 554

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F  IA+K L  WT +I G GMHG   +A+ LF +MR+ G++   I+F+ +L ACSH G
Sbjct: 555 MLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSG 614

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LVDEG + F++M +E KI PTVEHY C+VD+L R G L +A   IE+MP+ P+  IW +L
Sbjct: 615 LVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGAL 674

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L   R H ++++ E  A  + E +P+ TG Y L++NIYA A KW++V  +R+ + +RG+ 
Sbjct: 675 LCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLR 734

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K+ GCS +E +G++N F+ GD S+P+T+ I A LR++  ++   G+ P T   L      
Sbjct: 735 KNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYAL-IDAEE 793

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       +LA++ G+++      IR+ KNLRVC DCH + K +S +  REI++RD
Sbjct: 794 MEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRD 853

Query: 591 NSRFHHFKNGTCSCNDFW 608
           ++RFH FK+G CSC  FW
Sbjct: 854 SNRFHQFKDGHCSCRGFW 871



 Score =  194 bits (494), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 220/422 (52%), Gaps = 17/422 (4%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN++++    +   + ++ LF++M+   +  D +T  CV K  S L +V  G+Q+HG++L
Sbjct: 163 WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 222

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
           K GFG    V +SLV  Y K   +  ARKVFD+M +RDV+SWNS+I+GY  NG  E  + 
Sbjct: 223 KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 282

Query: 129 LFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYM 180
           +F +M       D  T  ++  G A    +   R V     K    +     N +++ Y 
Sbjct: 283 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYS 342

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           K G ++ A+ +F +M  R+++S+ SMI+GY   G   EA++LFE + +EG+ P   T+ +
Sbjct: 343 KCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTA 402

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
            L+  +   +L  G+ +H ++ ++    D  +  +L++MY+KCGS++ A  VF  +  K 
Sbjct: 403 VLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKD 462

Query: 301 LGHWTAIIVGLGMHGLADQALELF---MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           +  W  II G   +  A++AL LF   +E +R    P   T   VL AC+     D+G +
Sbjct: 463 IISWNTIIGGYSKNCYANEALSLFNLLLEEKRFS--PDERTVACVLPACASLSAFDKGRE 520

Query: 358 CFD-MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
               +M N Y     V +   LVD+  + G L  A  + + +  + + V W  +++    
Sbjct: 521 IHGYIMRNGYFSDRHVAN--SLVDMYAKCGALLLAHMLFDDIASK-DLVSWTVMIAGYGM 577

Query: 417 HG 418
           HG
Sbjct: 578 HG 579



 Score =  186 bits (471), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 211/381 (55%), Gaps = 12/381 (3%)

Query: 40  DGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVF 99
           D  TL  V++ C+   ++++GK++  ++   GF  D  + S L  MY   G++  A +VF
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVF 152

Query: 100 DKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVE 155
           D++     + WN L++  A++G+   ++ LF +M S     D++T++ +    +    V 
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 156 AAREVFDQMPK-----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGY 210
              ++   + K     ++SV  N+++  Y+K+ +++ AR++F +M  R++ISWNS+I+GY
Sbjct: 213 GGEQLHGFILKSGFGERNSVG-NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 271

Query: 211 QLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG 270
             NG   + + +F  +L  G+     TI+S  +  +   ++  GR +HS  VK CF  + 
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI 330
               +L++MYSKCG ++SA AVF+ ++++ +  +T++I G    GLA +A++LF EM   
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 331 GMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQ 390
           G+ P   T   VLN C+   L+DEG +  +  I E  +   +     L+D+  + G +Q+
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHE-WIKENDLGFDIFVSNALMDMYAKCGSMQE 450

Query: 391 AKNIIESMPMRPNKVIWMSLL 411
           A+ +   M ++ + + W +++
Sbjct: 451 AELVFSEMRVK-DIISWNTII 470


>AT1G20230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7009570-7011852 FORWARD
           LENGTH=760
          Length = 760

 Score =  439 bits (1129), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/684 (35%), Positives = 363/684 (53%), Gaps = 81/684 (11%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           PT+ S++ +I           ++ +F +M  H L+PD   LP + K C+ L A + GKQI
Sbjct: 79  PTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQI 138

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVV--------------- 108
           H      G   D FVQ S+ +MY + G MG ARKVFD+M D+DVV               
Sbjct: 139 HCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCL 198

Query: 109 --------------------SWNSLIDGYARNGNVEVAMKLFDE---------------- 132
                               SWN ++ G+ R+G  + A+ +F +                
Sbjct: 199 EEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSV 258

Query: 133 MPS-----------------------RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS 169
           +PS                       +D    +A++D   K G V     +F+Q     +
Sbjct: 259 LPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEA 318

Query: 170 VSWNAMINGYMKSGKINLARQLFG----QMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
              NA I G  ++G ++ A ++F     Q    N++SW S+I+G   NG+ +EA+ELF  
Sbjct: 319 GVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFRE 378

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCG 284
           +   G+ P+HVTI S L A   +A LG+GR  H F V+    LD V +G++LI+MY+KCG
Sbjct: 379 MQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVR-VHLLDNVHVGSALIDMYAKCG 437

Query: 285 SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
            I  +  VF  +  K L  W +++ G  MHG A + + +F  + R  +KP  I+F  +L+
Sbjct: 438 RINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
           AC   GL DEG K F MM  EY I P +EHY C+V++L RAG LQ+A ++I+ MP  P+ 
Sbjct: 498 ACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDS 557

Query: 405 VIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMM 464
            +W +LL+S R   N+++ E AA  L   +P+  G Y LLSNIYAA G W +V  +R  M
Sbjct: 558 CVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKM 617

Query: 465 KERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVL 524
           +  G+ K+ GCS ++ + ++   + GDKSHPQ   I  K+ E+SK+++ +GH P+    L
Sbjct: 618 ESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNLDFAL 677

Query: 525 XXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGR 584
                             +LA+ FGLLN    TP++++KNLR+C DCHAV K +S+  GR
Sbjct: 678 -HDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGR 736

Query: 585 EIIVRDNSRFHHFKNGTCSCNDFW 608
           EI +RD +RFHHFK+G CSC DFW
Sbjct: 737 EIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 181/435 (41%), Gaps = 80/435 (18%)

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           Q H  +LK G   D ++ + L+  Y+ +     A  V   + D  + S++SLI    +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 122 NVEVAMKLFDEMPSR---------------------------------------DAFTWT 142
               ++ +F  M S                                        DAF   
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 143 ALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGR---- 198
           ++     +CG++  AR+VFD+M  K  V+ +A++  Y + G +    ++  +M       
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           N++SWN ++SG+  +G   EA+ +F+ +   G  P  VT+ S L +V    +L  GR IH
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG---------------- 302
            +++K     D  + +++I+MY K G +   +++F      + G                
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 303 -------------------HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
                               WT+II G   +G   +ALELF EM+  G+KP+ +T   +L
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPN 403
            AC +   +  G       +  + ++  V     L+D+  + G +  ++ +   MP + N
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-N 453

Query: 404 KVIWMSLLSSSRNHG 418
            V W SL++    HG
Sbjct: 454 LVCWNSLMNGFSMHG 468


>AT3G03580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:860695-863343 REVERSE
           LENGTH=882
          Length = 882

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 356/611 (58%), Gaps = 11/611 (1%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VS+N +I  Y+      +++ +F + L     PD  T+  V++ C  L  +   K I+ Y
Sbjct: 274 VSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNY 332

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           +LK GF  +  V++ L+++YAK G+M  AR VF+ M  +D VSWNS+I GY ++G++  A
Sbjct: 333 MLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEA 392

Query: 127 MKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-----SVSWNAMIN 177
           MKLF  M       D  T+  L+    +   ++  + +     K       SVS NA+I+
Sbjct: 393 MKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVS-NALID 451

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K G++  + ++F  M   + ++WN++IS     G F   +++   + K  ++P   T
Sbjct: 452 MYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMAT 511

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
            L  L   + LA    G+ IH  +++  ++ +  +G +LIEMYSKCG +E++  VF+ ++
Sbjct: 512 FLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMS 571

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            + +  WT +I   GM+G  ++ALE F +M + G+ P ++ FI ++ ACSH GLVDEG  
Sbjct: 572 RRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLA 631

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
           CF+ M   YKI P +EHY C+VD+L R+  + +A+  I++MP++P+  IW S+L + R  
Sbjct: 632 CFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTS 691

Query: 418 GNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           G++E  E  +  +IE +PD  G   L SN YAA  KWDKVS +R+ +K++ + K+ G S 
Sbjct: 692 GDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSW 751

Query: 478 VEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXX 537
           +E    ++ F  GD S PQ++AIY  L  +   +   G++PD  +V              
Sbjct: 752 IEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLI 811

Query: 538 XXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHF 597
                RLAI+FGLLN E  TP+++MKNLRVC DCH VTKL+S I GREI+VRD +RFH F
Sbjct: 812 CGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLF 871

Query: 598 KNGTCSCNDFW 608
           K+GTCSC D W
Sbjct: 872 KDGTCSCKDRW 882



 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/461 (28%), Positives = 230/461 (49%), Gaps = 26/461 (5%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           LVSWN +IS Y  +    +AL ++ ++ +  ++PD FT+  V+     L  V++G+ +HG
Sbjct: 172 LVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHG 231

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           + LK G      V + LV MY K+     AR+VFD+M  RD VS+N++I GY +   VE 
Sbjct: 232 FALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEE 291

Query: 126 AMKLFDEMPSR---DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMING 178
           ++++F E   +   D  T +++L        +  A+ +++ M K      S   N +I+ 
Sbjct: 292 SVRMFLENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDV 351

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y K G +  AR +F  M  ++ +SWNS+ISGY  +G  +EAM+LF++++       H+T 
Sbjct: 352 YAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITY 411

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
           L  +S  + LA L  G+ +HS  +K    +D  +  +LI+MY+KCG +  +L +F ++  
Sbjct: 412 LMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGT 471

Query: 299 KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH---KGLVDEG 355
                W  +I      G     L++  +MR+  + P   TF+  L  C+    K L  E 
Sbjct: 472 GDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEI 531

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
           + C    +  +     ++    L+++  + G L+ +  + E M  R + V W  ++ +  
Sbjct: 532 HCC----LLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRR-DVVTWTGMIYAYG 586

Query: 416 NHGNLEIGEYAAHNLIEAD-----PDATGCYTLLSNIYAAA 451
            +G    GE A     + +     PD+      ++ IYA +
Sbjct: 587 MYGE---GEKALETFADMEKSGIVPDSV---VFIAIIYACS 621



 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 233/472 (49%), Gaps = 34/472 (7%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN II  +  N    +AL  + ++    + PD +T P VIK C+ L   + G  ++  +L
Sbjct: 74  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
            +GF  D FV ++LV+MY++ G +  AR+VFD+M  RD+VSWNSLI GY+ +G  E A++
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 129 LFDEMPSR----DAFTWTALLDGLAKCGKVEAAREV----FDQMPKKSSVSWNAMINGYM 180
           ++ E+ +     D+FT +++L        V+  + +             V  N ++  Y+
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYL 253

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           K  +   AR++F +M  R+ +S+N+MI GY       E++ +F   L +   P  +T+ S
Sbjct: 254 KFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSS 312

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
            L A   L  L   ++I+++M+K  F L+  +   LI++Y+KCG + +A  VF ++  K 
Sbjct: 313 VLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKD 372

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH-------KGLVD 353
              W +II G    G   +A++LF  M  +  +   IT++ +++  +        KGL  
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHS 432

Query: 354 EGNK---CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            G K   C D+ ++             L+D+  + G +  +  I  SM    + V W ++
Sbjct: 433 NGIKSGICIDLSVS-----------NALIDMYAKCGEVGDSLKIFSSMGT-GDTVTWNTV 480

Query: 411 LSSSRNHGNLEIGEYAAHNLIEAD--PD-ATGCYTLLSNIYAAAGKWDKVSH 459
           +S+    G+   G      + +++  PD AT   TL      AA +  K  H
Sbjct: 481 ISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIH 532



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 189/386 (48%), Gaps = 14/386 (3%)

Query: 45  PCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD 104
           P + +  S    + E ++IH  V+ +G     F    L++ Y+ + E   +  VF ++  
Sbjct: 8   PFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSP 67

Query: 105 -RDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAARE 159
            ++V  WNS+I  +++NG    A++ + ++     S D +T+ +++   A     E    
Sbjct: 68  AKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL 127

Query: 160 VFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGR 215
           V++Q+      S     NA+++ Y + G +  ARQ+F +MP R+L+SWNS+ISGY  +G 
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGY 187

Query: 216 FLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS 275
           + EA+E++  L    ++P   T+ S L A   L V+  G+ +H F +K   +   V+   
Sbjct: 188 YEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNG 247

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           L+ MY K      A  VF  +  +    +  +I G     + ++++ +F+E      KP 
Sbjct: 248 LVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPD 306

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
            +T   VL AC H   +      ++ M+   + +  TV +   L+D+  + G +  A+++
Sbjct: 307 LLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRN--ILIDVYAKCGDMITARDV 364

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNL 420
             SM  + + V W S++S     G+L
Sbjct: 365 FNSMECK-DTVSWNSIISGYIQSGDL 389



 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 10/196 (5%)

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           I  ALS+ S L  L   R IH+ ++    D        LI+ YS      S+L+VF+ ++
Sbjct: 10  ISRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVS 66

Query: 298 -NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE-- 354
             K +  W +II     +GL  +ALE + ++R   + P   TF  V+ AC+  GL D   
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACA--GLFDAEM 124

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G+  ++ +++       +     LVD+  R G L +A+ + + MP+R + V W SL+S  
Sbjct: 125 GDLVYEQILD-MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGY 182

Query: 415 RNHGNLEIGEYAAHNL 430
            +HG  E      H L
Sbjct: 183 SSHGYYEEALEIYHEL 198


>AT2G27610.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:11783927-11786533 REVERSE
           LENGTH=868
          Length = 868

 Score =  432 bits (1111), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/611 (37%), Positives = 359/611 (58%), Gaps = 8/611 (1%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           ++V+WN +IS Y  N    +AL +F  M  + +     +   VIK C+ L  ++  +Q+H
Sbjct: 259 SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLH 318

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGYARNGNV 123
             V+K GF FD+ ++++L+  Y+K   M  A ++F ++    +VVSW ++I G+ +N   
Sbjct: 319 CSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGK 378

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGY 179
           E A+ LF EM  +    + FT++ +L  L      E   +V     ++SS    A+++ Y
Sbjct: 379 EEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAY 438

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
           +K GK+  A ++F  +  +++++W++M++GY   G    A+++F  L K G+ P+  T  
Sbjct: 439 VKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFS 498

Query: 240 SALSAVSGL-AVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
           S L+  +   A +G G+  H F +K   D    + ++L+ MY+K G+IESA  VFK    
Sbjct: 499 SILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQRE 558

Query: 299 KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKC 358
           K L  W ++I G   HG A +AL++F EM++  +K   +TFIGV  AC+H GLV+EG K 
Sbjct: 559 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKY 618

Query: 359 FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           FD+M+ + KI PT EH  C+VD+  RAG L++A  +IE+MP      IW ++L++ R H 
Sbjct: 619 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHK 678

Query: 419 NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
             E+G  AA  +I   P+ +  Y LLSN+YA +G W + + VR++M ER V K+ G S +
Sbjct: 679 KTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738

Query: 479 EHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXX 538
           E + K   F+ GD+SHP    IY KL ++S +LK  G+ PDTS VL              
Sbjct: 739 EVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVL-QDIDDEHKEAVLA 797

Query: 539 XXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHF- 597
               RLAI+FGL+   + +P+ I+KNLRVC DCH V KL++ I  REI+VRD++RFHHF 
Sbjct: 798 QHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFS 857

Query: 598 KNGTCSCNDFW 608
            +G CSC DFW
Sbjct: 858 SDGVCSCGDFW 868



 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/433 (27%), Positives = 213/433 (49%), Gaps = 24/433 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+W  +IS Y  N  +++ L LF +M +    P+ FT    +   +       G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+H  V+K G      V +SL+N+Y K G +  AR +FDK   + VV+WNS+I GYA N
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 121 GNVEVAMKLFDEMP-SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW------- 172
           G    A+ +F  M  +    + ++    +  C  ++  R  F +    S V +       
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELR--FTEQLHCSVVKYGFLFDQN 331

Query: 173 --NAMINGYMKSGKINLARQLFGQMPG-RNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
              A++  Y K   +  A +LF ++    N++SW +MISG+  N    EA++LF  + ++
Sbjct: 332 IRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391

Query: 230 GLMPSHVT---ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
           G+ P+  T   IL+AL  +S   V       H+ +VK  ++    +GT+L++ Y K G +
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEV-------HAQVVKTNYERSSTVGTALLDAYVKLGKV 444

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           E A  VF  I +K +  W+A++ G    G  + A+++F E+ + G+KP+  TF  +LN C
Sbjct: 445 EEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
           +         K F     + ++  ++     L+ +  + G+++ A+ + +    + + V 
Sbjct: 505 AATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVS 563

Query: 407 WMSLLSSSRNHGN 419
           W S++S    HG 
Sbjct: 564 WNSMISGYAQHGQ 576



 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/415 (30%), Positives = 209/415 (50%), Gaps = 15/415 (3%)

Query: 16  YVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFD 75
           +  + R+ +A  LF  +    +  D      V+K  + L     G+Q+H   +K GF  D
Sbjct: 68  FSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDD 127

Query: 76  KFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG-NVEVA---MKLFD 131
             V +SLV+ Y K       RKVFD+M +R+VV+W +LI GYARN  N EV    M++ +
Sbjct: 128 VSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN 187

Query: 132 EMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMKSGKINL 187
           E    ++FT+ A L  LA+ G      +V   + K    K+    N++IN Y+K G +  
Sbjct: 188 EGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRK 247

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           AR LF +   +++++WNSMISGY  NG  LEA+ +F  +    +  S  +  S +   + 
Sbjct: 248 ARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCAN 307

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN-KKLGHWTA 306
           L  L     +H  +VK+ F  D  + T+L+  YSKC ++  AL +FK I     +  WTA
Sbjct: 308 LKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTA 367

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           +I G   +   ++A++LF EM+R G++P+  T+  +L A     ++        ++   Y
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP---VISPSEVHAQVVKTNY 424

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           +   TV     L+D   + G +++A  +   +  + + V W ++L+     G  E
Sbjct: 425 ERSSTVGT--ALLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAGYAQTGETE 476



 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 130/263 (49%), Gaps = 10/263 (3%)

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAK 150
           A  +FDK   RD  S+ SL+ G++R+G  + A +LF  +       D   ++++L   A 
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 151 CGKVEAAREVFDQMPK-----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNS 205
                  R++  Q  K       SV   ++++ YMK       R++F +M  RN+++W +
Sbjct: 106 LCDELFGRQLHCQCIKFGFLDDVSVG-TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTT 164

Query: 206 MISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC 265
           +ISGY  N    E + LF  +  EG  P+  T  +AL  ++   V G G  +H+ +VK+ 
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224

Query: 266 FDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFM 325
            D    +  SLI +Y KCG++  A  +F     K +  W ++I G   +GL  +AL +F 
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 326 EMRRIGMKPHAITFIGVLNACSH 348
            MR   ++    +F  V+  C++
Sbjct: 285 SMRLNYVRLSESSFASVIKLCAN 307



 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 150/308 (48%), Gaps = 24/308 (7%)

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
           G + S ++  A  LF + PGR+  S+ S++ G+  +GR  EA  LF  + + G M    +
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLG-MEMDCS 94

Query: 238 ILSALSAVSGLAVLGN---GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
           I S++  VS  A L +   GR +H   +K  F  D  +GTSL++ Y K  + +    VF 
Sbjct: 95  IFSSVLKVS--ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFD 152

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
            +  + +  WT +I G   + + D+ L LFM M+  G +P++ TF   L   + +G+   
Sbjct: 153 EMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGR 212

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G +   +++    +  T+     L+++  + G++++A+ + +   ++ + V W S++S  
Sbjct: 213 GLQVHTVVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISG- 269

Query: 415 RNHGNLEIGEYAAHNLIEADPDATGCY--TLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
                     YAA+ L   D +A G +    L+ +  +   +  V  +   +KE    + 
Sbjct: 270 ----------YAANGL---DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQ 316

Query: 473 AGCSIVEH 480
             CS+V++
Sbjct: 317 LHCSVVKY 324


>AT4G37380.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17572040-17573938 REVERSE
           LENGTH=632
          Length = 632

 Score =  432 bits (1110), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/643 (38%), Positives = 361/643 (56%), Gaps = 51/643 (7%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + S  L+ +    N  S  A   FR       LP    L  +I    +  +V E  QIH 
Sbjct: 1   MASSPLLATSLPQNQLSTTATARFR-------LPPPEKLAVLI---DKSQSVDEVLQIHA 50

Query: 66  YVLKIGFGFDK---FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
            +L+           +   L   YA  G++  +  +F + +D D+  + + I+  + NG 
Sbjct: 51  AILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGL 110

Query: 123 VEVAMKLFDEMPSR-----------------------------------DAFTWTALLDG 147
            + A  L+ ++ S                                    D +  T L+D 
Sbjct: 111 KDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDV 170

Query: 148 LAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMI 207
            AK G V +A++VFD+MP++S VS  AMI  Y K G +  AR LF  M  R+++SWN MI
Sbjct: 171 YAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMI 230

Query: 208 SGYQLNGRFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF 266
            GY  +G   +A+ LF+ LL EG   P  +T+++ALSA S +  L  GRWIH F+     
Sbjct: 231 DGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRI 290

Query: 267 DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFME 326
            L+  + T LI+MYSKCGS+E A+ VF     K +  W A+I G  MHG +  AL LF E
Sbjct: 291 RLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNE 350

Query: 327 MRRI-GMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
           M+ I G++P  ITFIG L AC+H GLV+EG + F+ M  EY I P +EHYGCLV +L RA
Sbjct: 351 MQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRA 410

Query: 386 GHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLS 445
           G L++A   I++M M  + V+W S+L S + HG+  +G+  A  LI  +   +G Y LLS
Sbjct: 411 GQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLS 470

Query: 446 NIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLR 505
           NIYA+ G ++ V+ VR +MKE+G++K+ G S +E   K++ F  GD+ H ++K IY  LR
Sbjct: 471 NIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLR 530

Query: 506 EMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNL 565
           ++S+++K  G+VP+T+ VL                  RLAI++GL++ +  +P++I KNL
Sbjct: 531 KISERIKSHGYVPNTNTVL-QDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNL 589

Query: 566 RVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           RVC+DCH VTKL+S I GR+I++RD +RFHHF +G+CSC DFW
Sbjct: 590 RVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 173/361 (47%), Gaps = 59/361 (16%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P L  +   I+    N   + A LL+ Q+L  ++ P+ FT   ++K CS     + GK I
Sbjct: 93  PDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLI 148

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H +VLK G G D +V + LV++YAK G++  A+KVFD+M +R +VS  ++I  YA+ GNV
Sbjct: 149 HTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNV 208

Query: 124 EVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM-----PKKSSVS------- 171
           E A  LFD M  RD  +W  ++DG A+ G    A  +F ++     PK   ++       
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSA 268

Query: 172 -----------W-----------------NAMINGYMKSGKINLARQLFGQMPGRNLISW 203
                      W                   +I+ Y K G +  A  +F   P +++++W
Sbjct: 269 CSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAW 328

Query: 204 NSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM- 261
           N+MI+GY ++G   +A+ LF E+    GL P+ +T +  L A +   ++  G  I   M 
Sbjct: 329 NAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMG 388

Query: 262 ----VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI---ANKKLGHWTAIIVGLGMH 314
               +K   +  G     L+ +  + G ++ A    K +   A+  L  W++++    +H
Sbjct: 389 QEYGIKPKIEHYGC----LVSLLGRAGQLKRAYETIKNMNMDADSVL--WSSVLGSCKLH 442

Query: 315 G 315
           G
Sbjct: 443 G 443


>AT1G56690.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:21253817-21255931 FORWARD
           LENGTH=704
          Length = 704

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/636 (36%), Positives = 360/636 (56%), Gaps = 33/636 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN ++S Y+ N    +A  +F  M   +++    +   ++KG  +   V E 
Sbjct: 74  MSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV----SWTAMVKGYMQEGMVGEA 129

Query: 61  KQIHGYVLK-------IGFG--------------------FDKFVQSSLVNMYAKWGEMG 93
           + +   + +       + FG                     D    ++++    + G + 
Sbjct: 130 ESLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVD 189

Query: 94  LARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGK 153
            AR +FD+M +R+VV+W ++I GY +N  V+VA KLF+ MP +   +WT++L G    G+
Sbjct: 190 EARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGR 249

Query: 154 VEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN 213
           +E A E F+ MP K  ++ NAMI G+ + G+I+ AR++F  M  R+  +W  MI  Y+  
Sbjct: 250 IEDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERK 309

Query: 214 GRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
           G  LEA++LF  + K+G+ PS  +++S LS  + LA L  GR +H+ +V+  FD D  + 
Sbjct: 310 GFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVA 369

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
           + L+ MY KCG +  A  VF   ++K +  W +II G   HGL ++AL++F EM   G  
Sbjct: 370 SVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTM 429

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKN 393
           P+ +T I +L ACS+ G ++EG + F+ M +++ + PTVEHY C VD+L RAG + +A  
Sbjct: 430 PNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAME 489

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGK 453
           +IESM ++P+  +W +LL + + H  L++ E AA  L E +PD  G Y LLS+I A+  K
Sbjct: 490 LIESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSK 549

Query: 454 WDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGD-KSHPQTKAIYAKLREMSKKLK 512
           W  V+ VR+ M+   V K  GCS +E   K++ F  G  K+HP+   I   L +    L+
Sbjct: 550 WGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLR 609

Query: 513 LAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCH 572
            AG+ PD S VL                  RLA+++GLL +    PIR+MKNLRVC DCH
Sbjct: 610 EAGYSPDCSHVL-HDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCH 668

Query: 573 AVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           A  KL+S +  REII+RD +RFHHF NG CSC D+W
Sbjct: 669 AAIKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 217/464 (46%), Gaps = 56/464 (12%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           SWN I+S Y  N    +A  LF +M   +++    +   ++ G  +   + E +     V
Sbjct: 50  SWNSIVSGYFSNGLPKEARQLFDEMSERNVV----SWNGLVSGYIKNRMIVEARN----V 101

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
            ++    +    +++V  Y + G +G A  +F +M +R+ VSW  +  G   +G ++ A 
Sbjct: 102 FELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDDGRIDKAR 161

Query: 128 KLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINL 187
           KL+D MP +D    T ++ GL + G+V+ AR +FD+M +++ V+W  MI GY ++ ++++
Sbjct: 162 KLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDV 221

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           AR+LF  MP +  +SW SM+ GY L+GR  +A E FEV+  + ++  +  I+        
Sbjct: 222 ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVG------- 274

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
                                           + + G I  A  VF  + ++    W  +
Sbjct: 275 --------------------------------FGEVGEISKARRVFDLMEDRDNATWRGM 302

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I      G   +AL+LF +M++ G++P   + I +L+ C+    +  G +    ++   +
Sbjct: 303 IKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVR-CQ 361

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAA 427
               V     L+ +  + G L +AK + +    + + ++W S++S   +HG   +GE A 
Sbjct: 362 FDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSK-DIIMWNSIISGYASHG---LGEEAL 417

Query: 428 HNLIEADPDAT--GCYTLLSNIYAA--AGKWDKVSHVREMMKER 467
               E     T     TL++ + A   AGK ++   + E M+ +
Sbjct: 418 KIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESK 461



 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 187/395 (47%), Gaps = 27/395 (6%)

Query: 83  VNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWT 142
           ++  ++ G++  ARK FD +  + + SWNS++ GY  NG  + A +LFDEM  R+  +W 
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 143 ALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
            L+ G  K   +  AR VF+ MP+++ VSW AM+ GYM+ G +  A  LF +MP RN +S
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVS 143

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG---NGRWIHS 259
           W  M  G   +GR  +A +L++      +MP    ++++ + + GL   G     R I  
Sbjct: 144 WTVMFGGLIDDGRIDKARKLYD------MMPVK-DVVASTNMIGGLCREGRVDEARLIFD 196

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
            M +     + V  T++I  Y +   ++ A  +F+ +  K    WT++++G  + G  + 
Sbjct: 197 EMRER----NVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIED 252

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           A E F  M    MKP  I    ++      G + +  + FD+M +          +  ++
Sbjct: 253 AEEFFEVM---PMKP-VIACNAMIVGFGEVGEISKARRVFDLMEDRDNAT-----WRGMI 303

Query: 380 DILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD-P 435
               R G   +A ++   M    +RP+    +S+LS      +L+ G     +L+     
Sbjct: 304 KAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFD 363

Query: 436 DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           D     ++L  +Y   G+  K   V +    + ++
Sbjct: 364 DDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDII 398


>AT2G22070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr2:9383602-9385962 FORWARD LENGTH=786
          Length = 786

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/676 (35%), Positives = 378/676 (55%), Gaps = 75/676 (11%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VSW  +I  Y +  + + A+ +   M+   + P  FTL  V+   +    ++ GK++H +
Sbjct: 112 VSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSF 171

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----------------------- 103
           ++K+G   +  V +SL+NMYAK G+  +A+ VFD+MV                       
Sbjct: 172 IVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLA 231

Query: 104 --------DRDVVSWNSLIDGYARNGNVEVAMKLF-----DEMPSRDAFTWTALLDGLA- 149
                   +RD+V+WNS+I G+ + G    A+ +F     D + S D FT  ++L   A 
Sbjct: 232 MAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACAN 291

Query: 150 ----------------------------------KCGKVEAAREVFDQMPKKS--SVSWN 173
                                             +CG VE AR + +Q   K      + 
Sbjct: 292 LEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFT 351

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           A+++GY+K G +N A+ +F  +  R++++W +MI GY+ +G + EA+ LF  ++  G  P
Sbjct: 352 ALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRP 411

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
           +  T+ + LS  S LA L +G+ IH   VK        +  +LI MY+K G+I SA   F
Sbjct: 412 NSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAF 471

Query: 294 KAI-ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
             I   +    WT++I+ L  HG A++ALELF  M   G++P  IT++GV +AC+H GLV
Sbjct: 472 DLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLV 531

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
           ++G + FDMM +  KI+PT+ HY C+VD+  RAG LQ+A+  IE MP+ P+ V W SLLS
Sbjct: 532 NQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLS 591

Query: 413 SSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           + R H N+++G+ AA  L+  +P+ +G Y+ L+N+Y+A GKW++ + +R+ MK+  V K+
Sbjct: 592 ACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKE 651

Query: 473 AGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXX 532
            G S +E + K++ F V D +HP+   IY  ++++  ++K  G+VPDT+ VL        
Sbjct: 652 QGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVL-HDLEEEV 710

Query: 533 XXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNS 592
                     +LAI+FGL++   +T +RIMKNLRVCNDCH   K +S + GREIIVRD +
Sbjct: 711 KEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTT 770

Query: 593 RFHHFKNGTCSCNDFW 608
           RFHHFK+G CSC D+W
Sbjct: 771 RFHHFKDGFCSCRDYW 786



 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/464 (25%), Positives = 206/464 (44%), Gaps = 107/464 (23%)

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +H  V+K G  F  ++ ++L+N+Y+K G    ARK+FD+M  R   SWN+++  Y++ G+
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-------------- 168
           ++   + FD++P RD+ +WT ++ G    G+   A  V   M K+               
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 169 --------------------------SVSWNAMINGYMKSG------------------- 183
                                     SVS N+++N Y K G                   
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVS-NSLLNMYAKCGDPMMAKFVFDRMVVRDISS 214

Query: 184 ------------KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
                       +++LA   F QM  R++++WNSMISG+   G  L A+++F  +L++ L
Sbjct: 215 WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSL 274

Query: 232 M-PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P   T+ S LSA + L  L  G+ IHS +V   FD+ G++  +LI MYS+CG +E+A 
Sbjct: 275 LSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETAR 334

Query: 291 A---------------------------------VFKAIANKKLGHWTAIIVGLGMHGLA 317
                                             +F ++ ++ +  WTA+IVG   HG  
Sbjct: 335 RLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSY 394

Query: 318 DQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGC 377
            +A+ LF  M   G +P++ T   +L+  S    +  G +     +   +I  +V     
Sbjct: 395 GEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIY-SVSVSNA 453

Query: 378 LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           L+ +  +AG++  A    + +    + V W S++ +   HG+ E
Sbjct: 454 LITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 11/215 (5%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V+W  +I  Y  +    +A+ LFR M+     P+ +TL  ++   S L ++  GKQIHG
Sbjct: 378 VVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHG 437

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGYARNGNVE 124
             +K G  +   V ++L+ MYAK G +  A + FD +  +RD VSW S+I   A++G+ E
Sbjct: 438 SAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAE 497

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV-----SWNAM 175
            A++LF+ M       D  T+  +       G V   R+ FD M     +      +  M
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACM 557

Query: 176 INGYMKSGKINLARQLFGQMPGR-NLISWNSMISG 209
           ++ + ++G +  A++   +MP   ++++W S++S 
Sbjct: 558 VDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592


>AT5G48910.1 | Symbols: LPA66 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19832969-19834909 REVERSE
           LENGTH=646
          Length = 646

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/613 (37%), Positives = 355/613 (57%), Gaps = 61/613 (9%)

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWG----EMGLARKVFDKMVDRDVVSWN 111
            +++  QIH   +K G   D    + ++   A       ++  A K+F++M  R+  SWN
Sbjct: 35  TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94

Query: 112 SLIDGYARNGNVE--VAMKLFDEMPSRD-----AFTWTALLDGLAKCGKVEA-------- 156
           ++I G++ +   +  +A+ LF EM S +      FT+ ++L   AK GK++         
Sbjct: 95  TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLA 154

Query: 157 ---------------------------AREVF-------------DQMPKKSS-VSWNAM 175
                                      AR +F             D+  +    V WN M
Sbjct: 155 LKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVM 214

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           I+GYM+ G    AR LF +M  R+++SWN+MISGY LNG F +A+E+F  + K  + P++
Sbjct: 215 IDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNY 274

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
           VT++S L A+S L  L  G W+H +       +D VLG++LI+MYSKCG IE A+ VF+ 
Sbjct: 275 VTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFER 334

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           +  + +  W+A+I G  +HG A  A++ F +MR+ G++P  + +I +L ACSH GLV+EG
Sbjct: 335 LPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEG 394

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
            + F  M++   + P +EHYGC+VD+L R+G L +A+  I +MP++P+ VIW +LL + R
Sbjct: 395 RRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACR 454

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
             GN+E+G+  A+ L++  P  +G Y  LSN+YA+ G W +VS +R  MKE+ + KD GC
Sbjct: 455 MQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGC 514

Query: 476 SIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXX 535
           S+++  G L+ F+V D SHP+ K I + L E+S KL+LAG+ P T+QVL           
Sbjct: 515 SLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVL-LNLEEEDKEN 573

Query: 536 XXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFH 595
                  ++A +FGL++     PIRI+KNLR+C DCH+  KL+S +Y R+I VRD  RFH
Sbjct: 574 VLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFH 633

Query: 596 HFKNGTCSCNDFW 608
           HF++G+CSC D+W
Sbjct: 634 HFQDGSCSCMDYW 646



 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 196/420 (46%), Gaps = 89/420 (21%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSND--ALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAV 57
           M +    SWN II  +  +       A+ LF +M+  + + P+ FT P V+K C++   +
Sbjct: 85  MPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKI 144

Query: 58  QEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDK---------MVDR--- 105
           QEGKQIHG  LK GFG D+FV S+LV MY   G M  AR +F K         M DR   
Sbjct: 145 QEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKR 204

Query: 106 --DVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQ 163
             ++V WN +IDGY R G+ + A  LFD+M  R   +W  ++ G +  G  + A EVF +
Sbjct: 205 DGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFRE 264

Query: 164 MPKK---------------------------------------SSVSWNAMINGYMKSGK 184
           M K                                          V  +A+I+ Y K G 
Sbjct: 265 MKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGI 324

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA 244
           I  A  +F ++P  N+I+W++MI+G+ ++G+  +A++ F  + + G+ PS V  ++ L+A
Sbjct: 325 IEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTA 384

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHW 304
            S   ++  GR   S MV     +DG+                            ++ H+
Sbjct: 385 CSHGGLVEEGRRYFSQMVS----VDGL--------------------------EPRIEHY 414

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN 364
             ++  LG  GL D+A E  + M    +KP  + +  +L AC  +G V+ G +  +++++
Sbjct: 415 GCMVDLLGRSGLLDEAEEFILNM---PIKPDDVIWKALLGACRMQGNVEMGKRVANILMD 471


>AT3G49142.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18215788-18217848 REVERSE
           LENGTH=686
          Length = 686

 Score =  428 bits (1100), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/610 (38%), Positives = 345/610 (56%), Gaps = 43/610 (7%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLK 69
           N++I  YV+N    + + +F  M   ++ PD +T PCV+K CS    +  G++IHG   K
Sbjct: 109 NVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATK 168

Query: 70  IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKL 129
           +G     FV + LV+MY K G +  AR V D+M  RDVVSWNSL+ GYA+N   + A+++
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228

Query: 130 FDEMP----SRDAFTWTALLDGLAKCG--KVEAAREVFDQMPKKSSVSWNAMINGYMKSG 183
             EM     S DA T  +LL  ++      V   +++F +M KKS VSWN MI  YMK+ 
Sbjct: 229 CREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNA 288

Query: 184 KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALS 243
                      MP                    +EA+EL+  +  +G  P  V+I S L 
Sbjct: 289 -----------MP--------------------VEAVELYSRMEADGFEPDAVSITSVLP 317

Query: 244 AVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH 303
           A    + L  G+ IH ++ +     + +L  +LI+MY+KCG +E A  VF+ + ++ +  
Sbjct: 318 ACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVS 377

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           WTA+I   G  G    A+ LF +++  G+ P +I F+  L ACSH GL++EG  CF +M 
Sbjct: 378 WTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMT 437

Query: 364 NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
           + YKI P +EH  C+VD+L RAG +++A   I+ M M PN+ +W +LL + R H + +IG
Sbjct: 438 DHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIG 497

Query: 424 EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGK 483
             AA  L +  P+ +G Y LLSNIYA AG+W++V+++R +MK +G+ K+ G S VE    
Sbjct: 498 LLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRI 557

Query: 484 LNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXR 543
           ++ F+VGD+SHPQ+  IY +L  + KK+K  G+VPD+   L                  +
Sbjct: 558 IHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESAL-HDVEEEDKETHLAVHSEK 616

Query: 544 LAISFGLLNMERR-----TPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFK 598
           LAI F L+N +         IRI KNLR+C DCH   KL+S I  REII+RD +RFH F+
Sbjct: 617 LAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 676

Query: 599 NGTCSCNDFW 608
            G CSC D+W
Sbjct: 677 FGVCSCGDYW 686



 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 124/270 (45%), Gaps = 24/270 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K +LVSWN++I  Y+ N    +A+ L+ +M      PD  ++  V+  C    A+  G
Sbjct: 269 MGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLG 328

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IHGY+ +     +  ++++L++MYAK G +  AR VF+ M  RDVVSW ++I  Y  +
Sbjct: 329 KKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFS 388

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           G    A+ LF ++       D+  +   L   +  G +E  R  F  M     ++     
Sbjct: 389 GRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEH 448

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGR----FLEAMELFEVL 226
              M++   ++GK+  A +    M    N   W +++   +++       L A +LF+  
Sbjct: 449 LACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQ-- 506

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRW 256
               L P        LS +   A    GRW
Sbjct: 507 ----LAPEQSGYYVLLSNIYAKA----GRW 528



 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 14/352 (3%)

Query: 127 MKLFDEMPSRDAFTWTALLDGLAKCGKVEA--AREVFDQMPKKSSVSWNAMINGYMKSGK 184
           ++L  + P    F    +LD       +    +R + + +   SS+    M   Y     
Sbjct: 31  LELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLM-RAYASLKD 89

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA 244
           +  AR++F ++P RN+I  N MI  Y  NG + E +++F  +    + P H T    L A
Sbjct: 90  VASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKA 149

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHW 304
            S    +  GR IH    K        +G  L+ MY KCG +  A  V   ++ + +  W
Sbjct: 150 CSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSW 209

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN 364
            +++VG   +   D ALE+  EM  + +   A T   +L A S+    +      DM   
Sbjct: 210 NSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT-TTENVMYVKDMFFK 268

Query: 365 EYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLE 421
             K   ++  +  ++ +  +     +A  +   M      P+ V   S+L +  +   L 
Sbjct: 269 MGK--KSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALS 326

Query: 422 IGEYAAHNLIEAD---PDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           +G+   H  IE     P+       L ++YA  G  +K   V E MK R V+
Sbjct: 327 LGK-KIHGYIERKKLIPNLL-LENALIDMYAKCGCLEKARDVFENMKSRDVV 376


>AT3G08820.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2677122-2679179 REVERSE
           LENGTH=685
          Length = 685

 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 348/613 (56%), Gaps = 9/613 (1%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +  +N +I+ +V+NH  ++ L LF  +  H L   GFT P V+K C+R  + + G  +
Sbjct: 74  PNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDL 133

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H  V+K GF  D    +SL+++Y+  G +  A K+FD++ DR VV+W +L  GY  +G  
Sbjct: 134 HSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRH 193

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAM 175
             A+ LF +M       D++    +L      G +++   +   M     +K+S     +
Sbjct: 194 REAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTL 253

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           +N Y K GK+  AR +F  M  +++++W++MI GY  N    E +ELF  +L+E L P  
Sbjct: 254 VNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQ 313

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            +I+  LS+ + L  L  G W  S + +H F  +  +  +LI+MY+KCG++     VFK 
Sbjct: 314 FSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKE 373

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           +  K +    A I GL  +G    +  +F +  ++G+ P   TF+G+L  C H GL+ +G
Sbjct: 374 MKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
            + F+ +   Y +  TVEHYGC+VD+  RAG L  A  +I  MPMRPN ++W +LLS  R
Sbjct: 434 LRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCR 493

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
              + ++ E     LI  +P   G Y  LSNIY+  G+WD+ + VR+MM ++G+ K  G 
Sbjct: 494 LVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGY 553

Query: 476 SIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXX 535
           S +E  GK++ F+  DKSHP +  IYAKL ++  +++L G VP T++ +           
Sbjct: 554 SWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVP-TTEFVFFDVEEEEKER 612

Query: 536 XXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFH 595
                  +LA++ GL++ +    IR++KNLRVC DCH V KL+S I  REI+VRDN+RFH
Sbjct: 613 VLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFH 672

Query: 596 HFKNGTCSCNDFW 608
            F NG+CSCND+W
Sbjct: 673 CFTNGSCSCNDYW 685



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 148/297 (49%), Gaps = 23/297 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+W+ +I  Y  N    + + LF QML  +L PD F++   +  C+ L A+  G
Sbjct: 273 MVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG 332

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +     + +  F  + F+ ++L++MYAK G M    +VF +M ++D+V  N+ I G A+N
Sbjct: 333 EWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKN 392

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMP-----KKSSVS 171
           G+V+++  +F +      S D  T+  LL G    G ++     F+ +      K++   
Sbjct: 393 GHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEH 452

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKE- 229
           +  M++ + ++G ++ A +L   MP R N I W +++SG     R ++  +L E +LKE 
Sbjct: 453 YGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG----CRLVKDTQLAETVLKEL 508

Query: 230 -GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG---VLGTSLIEMYSK 282
             L P +      LS +  +     GRW  +  V+   +  G   + G S IE+  K
Sbjct: 509 IALEPWNAGNYVQLSNIYSVG----GRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 143/316 (45%), Gaps = 38/316 (12%)

Query: 191 LFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV 250
           LF      N+  +NS+I+G+  N  F E ++LF  + K GL     T    L A +  + 
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126

Query: 251 LGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVG 310
              G  +HS +VK  F+ D    TSL+ +YS  G +  A  +F  I ++ +  WTA+  G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
               G   +A++LF +M  +G+KP +   + VL+AC H G +D G      M  E ++  
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYM-EEMEMQK 245

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESM-------------------------------- 398
                  LV++  + G +++A+++ +SM                                
Sbjct: 246 NSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQML 305

Query: 399 --PMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCY--TLLSNIYAAAGKW 454
              ++P++   +  LSS  + G L++GE+   +LI+     T  +    L ++YA  G  
Sbjct: 306 QENLKPDQFSIVGFLSSCASLGALDLGEWGI-SLIDRHEFLTNLFMANALIDMYAKCGAM 364

Query: 455 DKVSHVREMMKERGVL 470
            +   V + MKE+ ++
Sbjct: 365 ARGFEVFKEMKEKDIV 380


>AT2G45350.1 | Symbols: CRR4 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:18694816-18696657 REVERSE
           LENGTH=613
          Length = 613

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/516 (42%), Positives = 318/516 (61%), Gaps = 35/516 (6%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN +I  + H      ALLL   ML + +  D F+L  V+K CSRL  V+ G QIHG++ 
Sbjct: 89  WNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGGMQIHGFLK 148

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG------- 121
           K G   D F+Q+ L+ +Y K G +GL+R++FD+M  RD VS+NS+IDGY + G       
Sbjct: 149 KTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIVSARE 208

Query: 122 ---------------------------NVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKV 154
                                       V++A KLF +MP +D  +W +++DG  K G++
Sbjct: 209 LFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISWNSMIDGYVKHGRI 268

Query: 155 EAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
           E A+ +FD MP++  V+W  MI+GY K G ++ A+ LF QMP R+++++NSM++GY  N 
Sbjct: 269 EDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNK 328

Query: 215 RFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
             +EA+E+F  + KE  L+P   T++  L A++ L  L     +H ++V+  F L G LG
Sbjct: 329 YHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLG 388

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            +LI+MYSKCGSI+ A+ VF+ I NK + HW A+I GL +HGL + A ++ +++ R+ +K
Sbjct: 389 VALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIERLSLK 448

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKN 393
           P  ITF+GVLNACSH GLV EG  CF++M  ++KI P ++HYGC+VDIL R+G ++ AKN
Sbjct: 449 PDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSRSGSIELAKN 508

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGK 453
           +IE MP+ PN VIW + L++  +H   E GE  A +LI         Y LLSN+YA+ G 
Sbjct: 509 LIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGM 568

Query: 454 WDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIV 489
           W  V  VR MMKER + K  GCS +E  G+++ F V
Sbjct: 569 WKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 149/397 (37%), Gaps = 113/397 (28%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSND-ALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M    L+SWN +IS Y       D A  LF  M   DL+                     
Sbjct: 215 MEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLIS-------------------- 254

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
                               +S+++ Y K G +  A+ +FD M  RDVV+W ++IDGYA+
Sbjct: 255 -------------------WNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAK 295

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN------ 173
            G V  A  LFD+MP RD   + +++ G  +      A E+F  M K+S +  +      
Sbjct: 296 LGFVHHAKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVI 355

Query: 174 ----------------------------------AMINGYMKSGKINLARQLFGQMPGRN 199
                                             A+I+ Y K G I  A  +F  +  ++
Sbjct: 356 VLPAIAQLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKS 415

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
           +  WN+MI G  ++G    A ++   + +  L P  +T +  L+A S           HS
Sbjct: 416 IDHWNAMIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACS-----------HS 464

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
            +VK         G    E+  +   IE            +L H+  ++  L   G  + 
Sbjct: 465 GLVKE--------GLLCFELMRRKHKIEP-----------RLQHYGCMVDILSRSGSIEL 505

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
           A  L  EM    ++P+ + +   L ACSH    + G 
Sbjct: 506 AKNLIEEMP---VEPNDVIWRTFLTACSHHKEFETGE 539


>AT3G23330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8347200-8349347 FORWARD
           LENGTH=715
          Length = 715

 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/652 (34%), Positives = 362/652 (55%), Gaps = 45/652 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +  P +++W  +I C+      + AL  F +M      PD    P V+K C+ +  ++ G
Sbjct: 65  LKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGL-------------------------- 94
           + +HG+++++G   D +  ++L+NMYAK   MG                           
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184

Query: 95  ----------ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRD----AFT 140
                      R+VF+ M  +DVVS+N++I GYA++G  E A+++  EM + D    +FT
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMP 196
            +++L   ++   V   +E+   + +K   S     +++++ Y KS +I  + ++F ++ 
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRW 256
            R+ ISWNS+++GY  NGR+ EA+ LF  ++   + P  V   S + A + LA L  G+ 
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 257 IHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
           +H ++++  F  +  + ++L++MYSKCG+I++A  +F  +       WTAII+G  +HG 
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH 424

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
             +A+ LF EM+R G+KP+ + F+ VL ACSH GLVDE    F+ M   Y +   +EHY 
Sbjct: 425 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 484

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
            + D+L RAG L++A N I  M + P   +W +LLSS   H NLE+ E  A  +   D +
Sbjct: 485 AVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE 544

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQ 496
             G Y L+ N+YA+ G+W +++ +R  M+++G+ K   CS +E + K + F+ GD+SHP 
Sbjct: 545 NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 604

Query: 497 TKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERR 556
              I   L+ + ++++  G+V DTS VL                  RLA++FG++N E  
Sbjct: 605 MDKINEFLKAVMEQMEKEGYVADTSGVL-HDVDEEHKRELLFGHSERLAVAFGIINTEPG 663

Query: 557 TPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           T IR+ KN+R+C DCH   K +S I  REIIVRDNSRFHHF  G CSC D+W
Sbjct: 664 TTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715


>AT5G40405.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16169315-16171153 FORWARD
           LENGTH=612
          Length = 612

 Score =  420 bits (1079), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/472 (43%), Positives = 302/472 (63%), Gaps = 1/472 (0%)

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMP 196
           D    T L+   A+ G +++  +VF+ +P    V   AM+    + G +  AR+LF  MP
Sbjct: 142 DPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMP 201

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRW 256
            R+ I+WN+MISGY   G   EA+ +F ++  EG+  + V ++S LSA + L  L  GRW
Sbjct: 202 ERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRW 261

Query: 257 IHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
            HS++ ++   +   L T+L+++Y+KCG +E A+ VF  +  K +  W++ + GL M+G 
Sbjct: 262 AHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGF 321

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
            ++ LELF  M++ G+ P+A+TF+ VL  CS  G VDEG + FD M NE+ I P +EHYG
Sbjct: 322 GEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYG 381

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
           CLVD+  RAG L+ A +II+ MPM+P+  +W SLL +SR + NLE+G  A+  ++E +  
Sbjct: 382 CLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETA 441

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQ 496
             G Y LLSNIYA +  WD VSHVR+ MK +GV K  GCS++E  G+++ F VGDKSHP+
Sbjct: 442 NHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPK 501

Query: 497 TKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERR 556
              I A  +++S++L+LAG+  DT+ V+                  + AI+FG+++++  
Sbjct: 502 YTQIDAVWKDISRRLRLAGYKADTTPVM-FDIDEEEKEDALCLHSEKAAIAFGIMSLKED 560

Query: 557 TPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            PIRI+KNLRVC DCH V+ ++S I+ REIIVRD +RFHHFK+G CSCN FW
Sbjct: 561 VPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 165/340 (48%), Gaps = 44/340 (12%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLH--HDLLPDGFTLPCVIKGCSRLHAVQEG 60
           KPTL + N +I  +  +     +   +R++L   +DL PD +T+  +++ C+ L   + G
Sbjct: 68  KPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETG 127

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+HG  ++ GF  D  VQ+ L+++YA+ G +    KVF+ +   D V   +++   AR 
Sbjct: 128 LQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARC 187

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVF------------------- 161
           G+V  A KLF+ MP RD   W A++ G A+ G+   A  VF                   
Sbjct: 188 GDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVL 247

Query: 162 ---DQMPKKSSVSW-----------------NAMINGYMKSGKINLARQLFGQMPGRNLI 201
               Q+       W                   +++ Y K G +  A ++F  M  +N+ 
Sbjct: 248 SACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVY 307

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           +W+S ++G  +NG   + +ELF ++ ++G+ P+ VT +S L   S +  +  G+  H   
Sbjct: 308 TWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQR-HFDS 366

Query: 262 VKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANK 299
           +++ F ++  L     L+++Y++ G +E A+++ + +  K
Sbjct: 367 MRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMK 406


>AT4G33170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15995701-15998673 REVERSE
           LENGTH=990
          Length = 990

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/618 (37%), Positives = 355/618 (57%), Gaps = 13/618 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRL-HAVQE 59
           M +  L+SWN +I+    N    +A+ LF Q+L   L PD +T+  V+K  S L   +  
Sbjct: 376 MSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSL 435

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
            KQ+H + +KI    D FV ++L++ Y++   M  A  +F++  + D+V+WN+++ GY +
Sbjct: 436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH-NFDLVAWNAMMAGYTQ 494

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS-----V 170
           + +    +KLF  M  +    D FT   +         +   ++V     K        V
Sbjct: 495 SHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           S + +++ Y+K G ++ A+  F  +P  + ++W +MISG   NG    A  +F  +   G
Sbjct: 555 S-SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMG 613

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           ++P   TI +   A S L  L  GR IH+  +K     D  +GTSL++MY+KCGSI+ A 
Sbjct: 614 VLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAY 673

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +FK I    +  W A++VGL  HG   + L+LF +M+ +G+KP  +TFIGVL+ACSH G
Sbjct: 674 CLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSG 733

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LV E  K    M  +Y I P +EHY CL D L RAG ++QA+N+IESM M  +  ++ +L
Sbjct: 734 LVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTL 793

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L++ R  G+ E G+  A  L+E +P  +  Y LLSN+YAAA KWD++   R MMK   V 
Sbjct: 794 LAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVK 853

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           KD G S +E + K++ F+V D+S+ QT+ IY K+++M + +K  G+VP+T   L      
Sbjct: 854 KDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTL-VDVEE 912

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       +LA++FGLL+    TPIR++KNLRVC DCH   K ++ +Y REI++RD
Sbjct: 913 EEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRD 972

Query: 591 NSRFHHFKNGTCSCNDFW 608
            +RFH FK+G CSC D+W
Sbjct: 973 ANRFHRFKDGICSCGDYW 990



 Score =  160 bits (405), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 211/418 (50%), Gaps = 16/418 (3%)

Query: 13  ISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGF 72
           +S Y+H+ + +  L  F  M+  D+  D  T   ++    ++ ++  G+Q+H   LK+G 
Sbjct: 287 LSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGL 346

Query: 73  GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDE 132
                V +SL+NMY K  + G AR VFD M +RD++SWNS+I G A+NG    A+ LF +
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQ 406

Query: 133 M----PSRDAFTWTALLDGLAKCGK-VEAAREVFDQMPKKSSVS----WNAMINGYMKSG 183
           +       D +T T++L   +   + +  +++V     K ++VS      A+I+ Y ++ 
Sbjct: 407 LLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNR 466

Query: 184 KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALS 243
            +  A  LF +    +L++WN+M++GY  +    + ++LF ++ K+G      T+ +   
Sbjct: 467 CMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFK 525

Query: 244 AVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH 303
               L  +  G+ +H++ +K  +DLD  + + +++MY KCG + +A   F +I       
Sbjct: 526 TCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVA 585

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           WT +I G   +G  ++A  +F +MR +G+ P   T   +  A S    +++G +   +  
Sbjct: 586 WTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQ---IHA 642

Query: 364 NEYKIVPTVEHY--GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           N  K+  T + +    LVD+  + G +  A  + + + M  N   W ++L     HG 
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGE 699



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 163/370 (44%), Gaps = 82/370 (22%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GK  H  +L      ++F+ ++L++MY+K G +  AR+VFDKM DRD+VSWNS++  YA+
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 120 NG-----NVEVAMKLFDEM------PSR-------------------------------- 136
           +      N++ A  LF  +       SR                                
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLD 177

Query: 137 -DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSG----KINLAR-- 189
            D F   AL++   K GKV+  + +F++MP +  V WN M+  Y++ G     I+L+   
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 190 ------------QLFGQMPGRN--------------------LISWNSMISGYQLNGRFL 217
                       +L  ++ G +                    +I  N  +S Y  +G++ 
Sbjct: 238 HSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYS 297

Query: 218 EAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLI 277
             ++ F  +++  +    VT +  L+    +  L  G+ +H   +K   DL   +  SLI
Sbjct: 298 ALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLI 357

Query: 278 EMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAI 337
            MY K      A  VF  ++ + L  W ++I G+  +GL  +A+ LFM++ R G+KP   
Sbjct: 358 NMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY 417

Query: 338 TFIGVLNACS 347
           T   VL A S
Sbjct: 418 TMTSVLKAAS 427



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 7/170 (4%)

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
           G+  H+ ++    + +  L  +LI MYSKCGS+  A  VF  + ++ L  W +I+     
Sbjct: 58  GKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQ 117

Query: 314 HGLA-----DQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKI 368
                     QA  LF  +R+  +    +T   +L  C H G V   ++ F     +  +
Sbjct: 118 SSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-WASESFHGYACKIGL 176

Query: 369 VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
                  G LV+I  + G +++ K + E MP R + V+W  +L +    G
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKAYLEMG 225


>AT4G30700.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:14962617-14964995 REVERSE
           LENGTH=792
          Length = 792

 Score =  419 bits (1078), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/614 (37%), Positives = 341/614 (55%), Gaps = 7/614 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLP-DGFTLPCVIKGCSRLHAVQE 59
           M +   + WN +IS Y  N    +++ +FR +++      D  TL  ++   + L  ++ 
Sbjct: 180 MPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRL 239

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G QIH    K G     +V +  +++Y+K G++ +   +F +    D+V++N++I GY  
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 120 NGNVEVAMKLFDE-MPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW----NA 174
           NG  E+++ LF E M S      + L+  +   G +     +     K + +S      A
Sbjct: 300 NGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTA 359

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +   Y K  +I  AR+LF + P ++L SWN+MISGY  NG   +A+ LF  + K    P+
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
            VTI   LSA + L  L  G+W+H  +    F+    + T+LI MY+KCGSI  A  +F 
Sbjct: 420 PVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFD 479

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
            +  K    W  +I G G+HG   +AL +F EM   G+ P  +TF+ VL ACSH GLV E
Sbjct: 480 LMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKE 539

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G++ F+ MI+ Y   P+V+HY C+VDIL RAGHLQ+A   IE+M + P   +W +LL + 
Sbjct: 540 GDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGAC 599

Query: 415 RNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAG 474
           R H +  +    +  L E DPD  G + LLSNI++A   + + + VR+  K+R + K  G
Sbjct: 600 RIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPG 659

Query: 475 CSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXX 534
            +++E     + F  GD+SHPQ K IY KL ++  K++ AG+ P+T   L          
Sbjct: 660 YTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELAL-HDVEEEERE 718

Query: 535 XXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRF 594
                   RLAI+FGL+  E  T IRI+KNLRVC DCH VTKL+S I  R I+VRD +RF
Sbjct: 719 LMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRF 778

Query: 595 HHFKNGTCSCNDFW 608
           HHFK+G CSC D+W
Sbjct: 779 HHFKDGVCSCGDYW 792



 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 210/429 (48%), Gaps = 15/429 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           + +P +  +N+++  +  N   + +L +F  +    DL P+  T    I   S     + 
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+ IHG  +  G   +  + S++V MY K+  +  ARKVFD+M ++D + WN++I GY +
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 120 N----GNVEVAMKLFDEMPSR-DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA 174
           N     +++V   L +E  +R D  T   +L  +A+  ++    ++     K    S + 
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 175 MING----YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           ++ G    Y K GKI +   LF +    +++++N+MI GY  NG    ++ LF+ L+  G
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
                 T++S L  VSG  +L     IH + +K  F     + T+L  +YSK   IESA 
Sbjct: 318 ARLRSSTLVS-LVPVSGHLMLIYA--IHGYCLKSNFLSHASVSTALTTVYSKLNEIESAR 374

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F     K L  W A+I G   +GL + A+ LF EM++    P+ +T   +L+AC+  G
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            +  G    D ++       ++     L+ +  + G + +A+ + + M  + N+V W ++
Sbjct: 435 ALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLM-TKKNEVTWNTM 492

Query: 411 LSSSRNHGN 419
           +S    HG 
Sbjct: 493 ISGYGLHGQ 501


>AT5G16860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:5543834-5546386 FORWARD
           LENGTH=850
          Length = 850

 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/659 (36%), Positives = 352/659 (53%), Gaps = 57/659 (8%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           +VSWN II  Y    +   AL +F +M +     PD  TL  V+  C+ L     GKQ+H
Sbjct: 193 VVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLH 252

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
            + +      + FV + LV+MYAK G M  A  VF  M  +DVVSWN+++ GY++ G  E
Sbjct: 253 CFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFE 312

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCG----KVEAAREVFDQMPKKSSVSW---- 172
            A++LF++M       D  TW+A + G A+ G     +   R++     K + V+     
Sbjct: 313 DAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVL 372

Query: 173 --------------------------------------NAMINGYMKSGKINLARQLFGQ 194
                                                 N +I+ Y K  K++ AR +F  
Sbjct: 373 SGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDS 432

Query: 195 MPG--RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM--PSHVTILSALSAVSGLAV 250
           +    R++++W  MI GY  +G   +A+EL   + +E     P+  TI  AL A + LA 
Sbjct: 433 LSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAA 492

Query: 251 LGNGRWIHSFMVKHCFD-LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIV 309
           L  G+ IH++ +++  + +   +   LI+MY+KCGSI  A  VF  +  K    WT+++ 
Sbjct: 493 LRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMT 552

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIV 369
           G GMHG  ++AL +F EMRRIG K   +T + VL ACSH G++D+G + F+ M   + + 
Sbjct: 553 GYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVS 612

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHN 429
           P  EHY CLVD+L RAG L  A  +IE MPM P  V+W++ LS  R HG +E+GEYAA  
Sbjct: 613 PGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEK 672

Query: 430 LIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIV 489
           + E   +  G YTLLSN+YA AG+W  V+ +R +M+ +GV K  GCS VE       F V
Sbjct: 673 ITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV 732

Query: 490 GDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFG 549
           GDK+HP  K IY  L +  +++K  G+VP+T   L                  +LA+++G
Sbjct: 733 GDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFAL-HDVDDEEKDDLLFEHSEKLALAYG 791

Query: 550 LLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           +L   +   IRI KNLRVC DCH     +S I   +II+RD+SRFHHFKNG+CSC  +W
Sbjct: 792 ILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  225 bits (573), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 146/466 (31%), Positives = 233/466 (50%), Gaps = 58/466 (12%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN +I  Y  N  +N  L LF  M      PD +T P V K C  + +V+ G+  H   L
Sbjct: 95  WNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSL 154

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
             GF  + FV ++LV MY++   +  ARKVFD+M   DVVSWNS+I+ YA+ G  +VA++
Sbjct: 155 VTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214

Query: 129 LFDEMPS----------------------------------------RDAFTWTALLDGL 148
           +F  M +                                        ++ F    L+D  
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMY 274

Query: 149 AKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWN 204
           AKCG ++ A  VF  M  K  VSWNAM+ GY + G+   A +LF +M       ++++W+
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKH 264
           + ISGY   G   EA+ +   +L  G+ P+ VT++S LS  + +  L +G+ IH + +K+
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394

Query: 265 CFDL-------DGVLGTSLIEMYSKCGSIESALAVFKAIANKK--LGHWTAIIVGLGMHG 315
             DL       + ++   LI+MY+KC  +++A A+F +++ K+  +  WT +I G   HG
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454

Query: 316 LADQALELFMEM--RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI-NEYKIVPTV 372
            A++ALEL  EM       +P+A T    L AC+    +  G +     + N+   VP  
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLF 514

Query: 373 EHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
               CL+D+  + G +  A+ + ++M M  N+V W SL++    HG
Sbjct: 515 VS-NCLIDMYAKCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHG 558



 Score =  135 bits (340), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 174/373 (46%), Gaps = 53/373 (14%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           K  +V+W+  IS Y       +AL + RQML   + P+  TL  V+ GC+ + A+  GK+
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386

Query: 63  IHGYVLKI-------GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV--DRDVVSWNSL 113
           IH Y +K        G G +  V + L++MYAK  ++  AR +FD +   +RDVV+W  +
Sbjct: 387 IHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVM 446

Query: 114 IDGYARNGNVEVAMKLFDEMPSRD------AFTWTALLDGLA-----KCGKVEAAREVFD 162
           I GY+++G+   A++L  EM   D      AFT +  L   A     + GK   A  + +
Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRN 506

Query: 163 QMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMEL 222
           Q         N +I+ Y K G I+ AR +F  M  +N ++W S+++GY ++G   EA+ +
Sbjct: 507 QQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGI 566

Query: 223 FEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK 282
           F+ + + G     VT+L  L A S           HS M+    +    + T        
Sbjct: 567 FDEMRRIGFKLDGVTLLVVLYACS-----------HSGMIDQGMEYFNRMKT-------- 607

Query: 283 CGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGV 342
                    VF      +  H+  ++  LG  G  + AL L  EM    M+P  + ++  
Sbjct: 608 ---------VFGVSPGPE--HYACLVDLLGRAGRLNAALRLIEEMP---MEPPPVVWVAF 653

Query: 343 LNACSHKGLVDEG 355
           L+ C   G V+ G
Sbjct: 654 LSCCRIHGKVELG 666



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 181/432 (41%), Gaps = 65/432 (15%)

Query: 45  PCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD 104
           P  I  C  +  V   K IH  +L  G      + S L++ Y   G +  A  +  +   
Sbjct: 32  PPFIHKCKTISQV---KLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPP 87

Query: 105 RD--VVSWNSLIDGYARNGNVEVAMKLFDEMPS----RDAFTWTALLDGLA-----KCGK 153
            D  V  WNSLI  Y  NG     + LF  M S     D +T+  +          +CG+
Sbjct: 88  SDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGE 147

Query: 154 VEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN 213
              A  +         V  NA++  Y +   ++ AR++F +M   +++SWNS+I  Y   
Sbjct: 148 SAHALSLVTGFISNVFVG-NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKL 206

Query: 214 GRFLEAMELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL 272
           G+   A+E+F  +  E G  P ++T+++ L   + L     G+ +H F V      +  +
Sbjct: 207 GKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFV 266

Query: 273 GTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRR--- 329
           G  L++MY+KCG ++ A  VF  ++ K +  W A++ G    G  + A+ LF +M+    
Sbjct: 267 GNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKI 326

Query: 330 --------------------------------IGMKPHAITFIGVLNACSHKGLVDEGNK 357
                                            G+KP+ +T I VL+ C+  G +  G +
Sbjct: 327 KMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKE 386

Query: 358 --CFDMMINEYKIVPTVEHYG-------CLVDILCRAGHLQQAKNIIESM-PMRPNKVIW 407
             C+ +   +Y I      +G        L+D+  +   +  A+ + +S+ P   + V W
Sbjct: 387 IHCYAI---KYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTW 443

Query: 408 MSLLSSSRNHGN 419
             ++     HG+
Sbjct: 444 TVMIGGYSQHGD 455



 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 9/252 (3%)

Query: 175 MINGYMKSGKINLARQLFGQMPGRN--LISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +I+ Y+  G ++ A  L  + P  +  +  WNS+I  Y  NG   + + LF ++      
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P + T      A   ++ +  G   H+  +   F  +  +G +L+ MYS+C S+  A  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGVLNACSHKGL 351
           F  ++   +  W +II      G    ALE+F  M    G +P  IT + VL  C+  G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 352 VDEGNK--CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
              G +  CF +     +++  +    CLVD+  + G + +A  +  +M ++ + V W +
Sbjct: 245 HSLGKQLHCFAV---TSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVK-DVVSWNA 300

Query: 410 LLSSSRNHGNLE 421
           +++     G  E
Sbjct: 301 MVAGYSQIGRFE 312


>AT4G37170.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:17498580-17500655 REVERSE
           LENGTH=691
          Length = 691

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/618 (35%), Positives = 342/618 (55%), Gaps = 41/618 (6%)

Query: 31  QMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWG 90
           Q+L     P   T   +I+ CS+  A++EGK++H ++   GF     + + L+ MYAK G
Sbjct: 75  QLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCG 134

Query: 91  EMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAK 150
            +  ARKVFD+M +RD+ SWN +++GYA  G +E A KLFDEM  +D+++WTA++ G  K
Sbjct: 135 SLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVK 194

Query: 151 CGKVEAAREVFDQMPK----------------------------------------KSSV 170
             + E A  ++  M +                                           V
Sbjct: 195 KDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEV 254

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
            W+++++ Y K G I+ AR +F ++  ++++SW SMI  Y  + R+ E   LF  L+   
Sbjct: 255 LWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSC 314

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             P+  T    L+A + L     G+ +H +M +  FD      +SL++MY+KCG+IESA 
Sbjct: 315 ERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAK 374

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            V        L  WT++I G   +G  D+AL+ F  + + G KP  +TF+ VL+AC+H G
Sbjct: 375 HVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAG 434

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LV++G + F  +  ++++  T +HY CLVD+L R+G  +Q K++I  MPM+P+K +W S+
Sbjct: 435 LVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASV 494

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L     +GN+++ E AA  L + +P+    Y  ++NIYAAAGKW++   +R+ M+E GV 
Sbjct: 495 LGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVT 554

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K  G S  E + K + FI  D SHP    I   LRE+ KK+K  G+VP TS VL      
Sbjct: 555 KRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVL-HDVED 613

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       +LA++F +L+ E  T I++ KNLR C DCH   K +S I  R+I VRD
Sbjct: 614 EQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRD 673

Query: 591 NSRFHHFKNGTCSCNDFW 608
           ++RFH F+NG CSC D+W
Sbjct: 674 STRFHCFENGQCSCGDYW 691



 Score =  159 bits (401), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 186/361 (51%), Gaps = 12/361 (3%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLH-HDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           SW  +++ YV   +  +AL+L+  M    +  P+ FT+   +   + +  ++ GK+IHG+
Sbjct: 184 SWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGH 243

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           +++ G   D+ + SSL++MY K G +  AR +FDK+V++DVVSW S+ID Y ++      
Sbjct: 244 IVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREG 303

Query: 127 MKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMING 178
             LF E+       + +T+  +L+  A     E  ++V   M +      S + +++++ 
Sbjct: 304 FSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDM 363

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y K G I  A+ +    P  +L+SW S+I G   NG+  EA++ F++LLK G  P HVT 
Sbjct: 364 YTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTF 423

Query: 239 LSALSAVSGLAVLGNG-RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           ++ LSA +   ++  G  + +S   KH         T L+++ ++ G  E   +V   + 
Sbjct: 424 VNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMP 483

Query: 298 NKKLGH-WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
            K     W +++ G   +G  D A E   E+ +I  + + +T++ + N  +  G  +E  
Sbjct: 484 MKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPE-NPVTYVTMANIYAAAGKWEEEG 542

Query: 357 K 357
           K
Sbjct: 543 K 543



 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 11/253 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +VSW  +I  Y  + R  +   LF +++     P+ +T   V+  C+ L   + GKQ+HG
Sbjct: 284 VVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHG 343

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           Y+ ++GF    F  SSLV+MY K G +  A+ V D     D+VSW SLI G A+NG  + 
Sbjct: 344 YMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDE 403

Query: 126 AMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMI 176
           A+K FD +       D  T+  +L      G VE   E F  + +K  +S     +  ++
Sbjct: 404 ALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLV 463

Query: 177 NGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK-EGLMPS 234
           +   +SG+    + +  +MP + +   W S++ G    G    A E  + L K E   P 
Sbjct: 464 DLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV 523

Query: 235 HVTILSALSAVSG 247
               ++ + A +G
Sbjct: 524 TYVTMANIYAAAG 536



 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 9/122 (7%)

Query: 215 RFLEAMELF--EVLLKEGLM-------PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC 265
           RF EA+++   + LL+E +        P   T  + +   S    L  G+ +H  +    
Sbjct: 56  RFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSG 115

Query: 266 FDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFM 325
           F    V+   L+ MY+KCGS+  A  VF  + N+ L  W  ++ G    GL ++A +LF 
Sbjct: 116 FVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFD 175

Query: 326 EM 327
           EM
Sbjct: 176 EM 177


>AT1G59720.1 | Symbols: CRR28 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:21939868-21941784 REVERSE
           LENGTH=638
          Length = 638

 Score =  418 bits (1075), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/575 (38%), Positives = 338/575 (58%), Gaps = 28/575 (4%)

Query: 61  KQIHGYVLKIGFGFDK---FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
           KQ+H + L+  +  +    F+   ++ + + + ++  A +VFD + +     WN+LI   
Sbjct: 65  KQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNTLIRAC 124

Query: 118 ARN-GNVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK---- 167
           A +    E A  L+ +M  R     D  T+  +L   A        ++V  Q+ K     
Sbjct: 125 AHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGG 184

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
                N +I+ Y   G ++LAR++F +MP R+L+SWNSMI      G +  A++LF  + 
Sbjct: 185 DVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREM- 243

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC---FDLDGVLGTSLIEMYSKCG 284
           +    P   T+ S LSA +GL  L  G W H+F+++ C     +D ++  SLIEMY KCG
Sbjct: 244 QRSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCG 303

Query: 285 SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM--RRIGMKPHAITFIGV 342
           S+  A  VF+ +  + L  W A+I+G   HG A++A+  F  M  +R  ++P+++TF+G+
Sbjct: 304 SLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGL 363

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
           L AC+H+G V++G + FDMM+ +Y I P +EHYGC+VD++ RAG++ +A +++ SMPM+P
Sbjct: 364 LIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKP 423

Query: 403 NKVIWMSLLSSSRNHG-NLEIGEYAAHNLIEADPD-------ATGCYTLLSNIYAAAGKW 454
           + VIW SLL +    G ++E+ E  A N+I    D        +G Y LLS +YA+A +W
Sbjct: 424 DAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRW 483

Query: 455 DKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLA 514
           + V  VR++M E G+ K+ GCS +E  G  + F  GD SHPQTK IY +L+ +  +L+  
Sbjct: 484 NDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSI 543

Query: 515 GHVPDTSQV-LXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHA 573
           G++PD SQ  L                  RLAI+FGL+N+  +TPIRI KNLRVCNDCH 
Sbjct: 544 GYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHE 603

Query: 574 VTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           VTKL+S ++  EIIVRD  RFHHFK+G+CSC D+W
Sbjct: 604 VTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLDYW 638



 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 16/236 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M + +LVSWN +I   V     + AL LFR+M      PDG+T+  V+  C+ L ++  G
Sbjct: 212 MPERSLVSWNSMIDALVRFGEYDSALQLFREM-QRSFEPDGYTMQSVLSACAGLGSLSLG 270

Query: 61  KQIHGYVLK---IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
              H ++L+   +    D  V++SL+ MY K G + +A +VF  M  RD+ SWN++I G+
Sbjct: 271 TWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGF 330

Query: 118 ARNGNVEVAMKLFDEMPSR------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS 171
           A +G  E AM  FD M  +      ++ T+  LL      G V   R+ FD M +   + 
Sbjct: 331 ATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIE 390

Query: 172 -----WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAME 221
                +  +++   ++G I  A  +   MP + + + W S++      G  +E  E
Sbjct: 391 PALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 446


>AT1G68930.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:25918314-25920545 FORWARD LENGTH=743
          Length = 743

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 357/643 (55%), Gaps = 44/643 (6%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPD--GFTLPCVIKGCSRLHAVQEGKQIH 64
           V+WN++I  Y  +     A+  +  M+  D   +    TL  ++K  S    V  GKQIH
Sbjct: 104 VTWNVLIEGYSLSGLVGAAVKAYNTMMR-DFSANLTRVTLMTMLKLSSSNGHVSLGKQIH 162

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           G V+K+GF     V S L+ MYA  G +  A+KVF  + DR+ V +NSL+ G    G +E
Sbjct: 163 GQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIE 222

Query: 125 VAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVF----------DQMPKKSSVS--- 171
            A++LF  M  +D+ +W A++ GLA+ G  + A E F          DQ P  S +    
Sbjct: 223 DALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACG 281

Query: 172 --------------------------WNAMINGYMKSGKINLARQLFGQMPGRNLISWNS 205
                                      +A+I+ Y K   ++ A+ +F +M  +N++SW +
Sbjct: 282 GLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTA 341

Query: 206 MISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC 265
           M+ GY   GR  EA+++F  + + G+ P H T+  A+SA + ++ L  G   H   +   
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401

Query: 266 FDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFM 325
                 +  SL+ +Y KCG I+ +  +F  +  +    WTA++      G A + ++LF 
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461

Query: 326 EMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
           +M + G+KP  +T  GV++ACS  GLV++G + F +M +EY IVP++ HY C++D+  R+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRS 521

Query: 386 GHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLS 445
           G L++A   I  MP  P+ + W +LLS+ RN GNLEIG++AA +LIE DP     YTLLS
Sbjct: 522 GRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLS 581

Query: 446 NIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLR 505
           +IYA+ GKWD V+ +R  M+E+ V K+ G S ++ +GKL+ F   D+S P    IYAKL 
Sbjct: 582 SIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLE 641

Query: 506 EMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNL 565
           E++ K+   G+ PDTS V                   RLAI+FGL+ +    PIR+ KNL
Sbjct: 642 ELNNKIIDNGYKPDTSFV-HHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNL 700

Query: 566 RVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           RVC DCH  TK +S++ GREI+VRD  RFH FK+GTCSC DFW
Sbjct: 701 RVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 198/444 (44%), Gaps = 75/444 (16%)

Query: 48  IKGCSRLHAVQEG---KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD 104
           IK C  L A  +    K IHG +++     + F+ +++V+ YA       AR+VFD++  
Sbjct: 10  IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69

Query: 105 RDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM 164
            ++ SWN+L+  Y++ G +      F+++P RD  TW  L++G +  G V AA + ++ M
Sbjct: 70  PNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 129

Query: 165 PKKSS--------------------VSWNAMING--------------------YMKSGK 184
            +  S                    VS    I+G                    Y   G 
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189

Query: 185 INLARQLFGQMPGRNLISWNS------------------------------MISGYQLNG 214
           I+ A+++F  +  RN + +NS                              MI G   NG
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
              EA+E F  +  +GL        S L A  GL  +  G+ IH+ +++  F     +G+
Sbjct: 250 LAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGS 309

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           +LI+MY KC  +  A  VF  +  K +  WTA++VG G  G A++A+++F++M+R G+ P
Sbjct: 310 ALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDP 369

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
              T    ++AC++   ++EG++     I    ++  V     LV +  + G +  +  +
Sbjct: 370 DHYTLGQAISACANVSSLEEGSQFHGKAITS-GLIHYVTVSNSLVTLYGKCGDIDDSTRL 428

Query: 395 IESMPMRPNKVIWMSLLSSSRNHG 418
              M +R + V W +++S+    G
Sbjct: 429 FNEMNVR-DAVSWTAMVSAYAQFG 451



 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 166/371 (44%), Gaps = 43/371 (11%)

Query: 118 ARNGNVEVAM---KLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA 174
           ARN +  V M    +   +P  + F +  ++   A       AR VFD++P+ +  SWN 
Sbjct: 18  ARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNN 77

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE-GLMP 233
           ++  Y K+G I+     F ++P R+ ++WN +I GY L+G    A++ +  ++++     
Sbjct: 78  LLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANL 137

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK----------- 282
           + VT+++ L   S    +  G+ IH  ++K  F+   ++G+ L+ MY+            
Sbjct: 138 TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVF 197

Query: 283 --------------------CGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALE 322
                               CG IE AL +F+ +    +  W A+I GL  +GLA +A+E
Sbjct: 198 YGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVS-WAAMIKGLAQNGLAKEAIE 256

Query: 323 LFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDIL 382
            F EM+  G+K     F  VL AC   G ++EG +    +I        +     L+D+ 
Sbjct: 257 CFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDHIYVGSALIDMY 315

Query: 383 CRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE--IGEYAAHNLIEADPDATGC 440
           C+   L  AK + + M  + N V W +++      G  E  +  +        DPD    
Sbjct: 316 CKCKCLHYAKTVFDRMKQK-NVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDH--- 371

Query: 441 YTLLSNIYAAA 451
           YTL   I A A
Sbjct: 372 YTLGQAISACA 382



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 128/258 (49%), Gaps = 11/258 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW  ++  Y    R+ +A+ +F  M    + PD +TL   I  C+ + +++EG
Sbjct: 331 MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEG 390

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q HG  +  G      V +SLV +Y K G++  + ++F++M  RD VSW +++  YA+ 
Sbjct: 391 SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQF 450

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV-----S 171
           G     ++LFD+M       D  T T ++   ++ G VE  +  F  M  +  +      
Sbjct: 451 GRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGH 510

Query: 172 WNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLK-E 229
           ++ MI+ + +SG++  A +    MP   + I W +++S  +  G         E L++ +
Sbjct: 511 YSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELD 570

Query: 230 GLMPSHVTILSALSAVSG 247
              P+  T+LS++ A  G
Sbjct: 571 PHHPAGYTLLSSIYASKG 588


>AT1G16480.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5625843-5628656 REVERSE
           LENGTH=937
          Length = 937

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 349/618 (56%), Gaps = 12/618 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    L+SWN +++ +V++ RS DAL L   M+      +  T    +  C      ++G
Sbjct: 322 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 381

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +HG V+  G  +++ + ++LV+MY K GEM  +R+V  +M  RDVV+WN+LI GYA +
Sbjct: 382 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 441

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDG------LAKCGKVEAAREVFDQMPKKSSV 170
            + + A+  F  M     S +  T  ++L        L + GK   A  V         V
Sbjct: 442 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 501

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             N++I  Y K G ++ ++ LF  +  RN+I+WN+M++    +G   E ++L   +   G
Sbjct: 502 K-NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG 560

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           +     +    LSA + LAVL  G+ +H   VK  F+ D  +  +  +MYSKCG I   +
Sbjct: 561 VSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVV 620

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +     N+ L  W  +I  LG HG  ++    F EM  +G+KP  +TF+ +L ACSH G
Sbjct: 621 KMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGG 680

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LVD+G   +DM+  ++ + P +EH  C++D+L R+G L +A+  I  MPM+PN ++W SL
Sbjct: 681 LVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSL 740

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L+S + HGNL+ G  AA NL + +P+    Y L SN++A  G+W+ V +VR+ M  + + 
Sbjct: 741 LASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIK 800

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K   CS V+ + K++ F +GD++HPQT  IYAKL ++ K +K +G+V DTSQ L      
Sbjct: 801 KKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQAL-QDTDE 859

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       RLA+++ L++    + +RI KNLR+C+DCH+V K +S + GR I++RD
Sbjct: 860 EQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRD 919

Query: 591 NSRFHHFKNGTCSCNDFW 608
             RFHHF+ G CSC D+W
Sbjct: 920 QYRFHHFERGLCSCKDYW 937



 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 204/429 (47%), Gaps = 9/429 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +VSW  ++  Y       + + +++ M    +  +  ++  VI  C  L     G
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QI G V+K G      V++SL++M    G +  A  +FD+M +RD +SWNS+   YA+N
Sbjct: 180 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 239

Query: 121 GNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----W 172
           G++E + ++F  M       ++ T + LL  L      +  R +   + K    S     
Sbjct: 240 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 299

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N ++  Y  +G+   A  +F QMP ++LISWNS+++ +  +GR L+A+ L   ++  G  
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
            ++VT  SAL+A         GR +H  +V      + ++G +L+ MY K G +  +  V
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
              +  + +  W A+I G       D+AL  F  MR  G+  + IT + VL+AC   G +
Sbjct: 420 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            E  K     I              L+ +  + G L  ++++   +  R N + W ++L+
Sbjct: 480 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLA 538

Query: 413 SSRNHGNLE 421
           ++ +HG+ E
Sbjct: 539 ANAHHGHGE 547



 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 207/439 (47%), Gaps = 26/439 (5%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAV-QEGKQIHG 65
           VSWN ++S  V      + +  FR+M    + P  F +  ++  C R  ++ +EG Q+HG
Sbjct: 24  VSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 83

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           +V K G   D +V ++++++Y  +G +  +RKVF++M DR+VVSW SL+ GY+  G  E 
Sbjct: 84  FVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEE 143

Query: 126 AMKLFDEMPSRD-AFTWTALLDGLAKCG--KVEA-AREVFDQMPKKSSVS----WNAMIN 177
            + ++  M          ++   ++ CG  K E+  R++  Q+ K    S     N++I+
Sbjct: 144 VIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLIS 203

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
                G ++ A  +F QM  R+ ISWNS+ + Y  NG   E+  +F ++ +     +  T
Sbjct: 204 MLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTT 263

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           + + LS +  +     GR IH  +VK  FD    +  +L+ MY+  G    A  VFK + 
Sbjct: 264 VSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP 323

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            K L  W +++      G +  AL L   M   G   + +TF   L AC      ++G  
Sbjct: 324 TKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRI 383

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
              +++        +     LV +  + G + +++ ++  MP R + V W +L       
Sbjct: 384 LHGLVVVSGLFYNQIIG-NALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNAL------- 434

Query: 418 GNLEIGEYAAHNLIEADPD 436
               IG YA     + DPD
Sbjct: 435 ----IGGYAE----DEDPD 445



 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 166/349 (47%), Gaps = 23/349 (6%)

Query: 85  MYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM------PSRDA 138
           MY K+G +  AR +FD M  R+ VSWN+++ G  R G     M+ F +M      PS  +
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPS--S 58

Query: 139 FTWTALLDGLAKCGKV-EAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFG 193
           F   +L+    + G +     +V   + K   +S      A+++ Y   G ++ +R++F 
Sbjct: 59  FVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFE 118

Query: 194 QMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN 253
           +MP RN++SW S++ GY   G   E +++++ +  EG+  +  ++   +S+   L     
Sbjct: 119 EMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESL 178

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
           GR I   +VK   +    +  SLI M    G+++ A  +F  ++ +    W +I      
Sbjct: 179 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE 373
           +G  +++  +F  MRR   + ++ T   +L+   H   VD  ++ +   I+   +    +
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGH---VD--HQKWGRGIHGLVVKMGFD 293

Query: 374 HYGCLVDILCR----AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
              C+ + L R    AG   +A  + + MP + + + W SL++S  N G
Sbjct: 294 SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMASFVNDG 341


>AT4G16835.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9472763-9474803 FORWARD
           LENGTH=656
          Length = 656

 Score =  413 bits (1061), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/535 (40%), Positives = 321/535 (60%), Gaps = 2/535 (0%)

Query: 75  DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP 134
           D F  + +++ Y +      A+  FD+M  +D  SWN++I GYAR G +E A +LF  M 
Sbjct: 123 DTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMM 182

Query: 135 SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQ 194
            ++  +W A++ G  +CG +E A   F   P +  V+W AMI GYMK+ K+ LA  +F  
Sbjct: 183 EKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKD 242

Query: 195 MP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN 253
           M   +NL++WN+MISGY  N R  + ++LF  +L+EG+ P+   + SAL   S L+ L  
Sbjct: 243 MTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQL 302

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
           GR IH  + K     D    TSLI MY KCG +  A  +F+ +  K +  W A+I G   
Sbjct: 303 GRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQ 362

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE 373
           HG AD+AL LF EM    ++P  ITF+ VL AC+H GLV+ G   F+ M+ +YK+ P  +
Sbjct: 363 HGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPD 422

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
           HY C+VD+L RAG L++A  +I SMP RP+  ++ +LL + R H N+E+ E+AA  L++ 
Sbjct: 423 HYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQL 482

Query: 434 DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKS 493
           +      Y  L+NIYA+  +W+ V+ VR+ MKE  V+K  G S +E R K++ F   D+ 
Sbjct: 483 NSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRI 542

Query: 494 HPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNM 553
           HP+  +I+ KL+E+ KK+KLAG+ P+    L                  +LA++FG + +
Sbjct: 543 HPELDSIHKKLKELEKKMKLAGYKPELEFAL-HNVEEEQKEKLLLWHSEKLAVAFGCIKL 601

Query: 554 ERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            + + I++ KNLR+C DCH   K +S I  REIIVRD +RFHHFK+G+CSC D+W
Sbjct: 602 PQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 109/203 (53%), Gaps = 9/203 (4%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
            LV+WN +IS YV N R  D L LFR ML   + P+   L   + GCS L A+Q G+QIH
Sbjct: 248 NLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIH 307

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
             V K     D    +SL++MY K GE+G A K+F+ M  +DVV+WN++I GYA++GN +
Sbjct: 308 QIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNAD 367

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAM 175
            A+ LF EM       D  T+ A+L      G V      F+ M +   V      +  M
Sbjct: 368 KALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCM 427

Query: 176 INGYMKSGKINLARQLFGQMPGR 198
           ++   ++GK+  A +L   MP R
Sbjct: 428 VDLLGRAGKLEEALKLIRSMPFR 450



 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 167/326 (51%), Gaps = 17/326 (5%)

Query: 101 KMVDRD-VVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAK-CGKVEAAR 158
           K  D+D +   N +I    R+G+++ A+++F  M +++  TW +LL G++K   ++  A 
Sbjct: 54  KPSDQDQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAH 113

Query: 159 EVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLE 218
           ++FD++P+  + S+N M++ Y+++     A+  F +MP ++  SWN+MI+GY   G   +
Sbjct: 114 QLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEK 173

Query: 219 AMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN-GRWIHSFMVKHCFDLDGVLG-TSL 276
           A ELF  ++++         +S  + +SG    G+  +  H F V     + GV+  T++
Sbjct: 174 ARELFYSMMEKNE-------VSWNAMISGYIECGDLEKASHFFKVA---PVRGVVAWTAM 223

Query: 277 IEMYSKCGSIESALAVFKAIA-NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           I  Y K   +E A A+FK +  NK L  W A+I G   +   +  L+LF  M   G++P+
Sbjct: 224 ITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPN 283

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII 395
           +      L  CS    +  G +    ++++  +   V     L+ + C+ G L  A  + 
Sbjct: 284 SSGLSSALLGCSELSALQLGRQ-IHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLF 342

Query: 396 ESMPMRPNKVIWMSLLSSSRNHGNLE 421
           E M  + + V W +++S    HGN +
Sbjct: 343 EVMK-KKDVVAWNAMISGYAQHGNAD 367



 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/214 (22%), Positives = 83/214 (38%), Gaps = 38/214 (17%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K  +V+WN +IS Y  +  ++ AL LFR+M+ + + PD  T   V+  C+        
Sbjct: 345 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN-------- 396

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
              H  ++ IG  +                       V D  V+     +  ++D   R 
Sbjct: 397 ---HAGLVNIGMAY-------------------FESMVRDYKVEPQPDHYTCMVDLLGRA 434

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGK----VEAAREVFDQMPKKSSVSWNAMI 176
           G +E A+KL   MP R        L G  +  K     E A E   Q+  +++  +  + 
Sbjct: 435 GKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLA 494

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGY 210
           N Y    +     ++  +M   N++     + GY
Sbjct: 495 NIYASKNRWEDVARVRKRMKESNVVK----VPGY 524


>AT5G09950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:3102877-3105864 REVERSE
           LENGTH=995
          Length = 995

 Score =  407 bits (1045), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 354/618 (57%), Gaps = 19/618 (3%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VSWN +I+    N    +A+  ++ M  HD+LP  FTL   +  C+ L   + G+QIHG 
Sbjct: 381 VSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGE 440

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG-NVEV 125
            LK+G   +  V ++L+ +YA+ G +   RK+F  M + D VSWNS+I   AR+  ++  
Sbjct: 441 SLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPE 500

Query: 126 AMKLF------DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVSWNAM 175
           A+  F       +  +R  F+           G  E  +++     K +    + + NA+
Sbjct: 501 AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFG--ELGKQIHGLALKNNIADEATTENAL 558

Query: 176 INGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           I  Y K G+++   ++F +M  R + ++WNSMISGY  N    +A++L   +L+ G    
Sbjct: 559 IACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLD 618

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
                + LSA + +A L  G  +H+  V+ C + D V+G++L++MYSKCG ++ AL  F 
Sbjct: 619 SFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFN 678

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK-PHAITFIGVLNACSHKGLVD 353
            +  +    W ++I G   HG  ++AL+LF  M+  G   P  +TF+GVL+ACSH GL++
Sbjct: 679 TMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLE 738

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           EG K F+ M + Y + P +EH+ C+ D+L RAG L + ++ IE MPM+PN +IW ++L +
Sbjct: 739 EGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGA 798

Query: 414 --SRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
               N    E+G+ AA  L + +P+    Y LL N+YAA G+W+ +   R+ MK+  V K
Sbjct: 799 CCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKK 858

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXX 531
           +AG S V  +  ++ F+ GDKSHP    IY KL+E+++K++ AG+VP T   L       
Sbjct: 859 EAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFAL-YDLEQE 917

Query: 532 XXXXXXXXXXXRLAISFGLLNMERRT-PIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                      +LA++F L      T PIRIMKNLRVC DCH+  K +S I GR+II+RD
Sbjct: 918 NKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRD 977

Query: 591 NSRFHHFKNGTCSCNDFW 608
           ++RFHHF++G CSC+DFW
Sbjct: 978 SNRFHHFQDGACSCSDFW 995



 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 207/427 (48%), Gaps = 24/427 (5%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQ--EGKQIH 64
           VSW  I+S Y  N    +AL+  R M+   +  + +    V++ C  + +V    G+QIH
Sbjct: 68  VSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIH 127

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKW-GEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           G + K+ +  D  V + L++MY K  G +G A   F  +  ++ VSWNS+I  Y++ G+ 
Sbjct: 128 GLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQ 187

Query: 124 EVAMKLFDEMP---SRDA-FTWTALLDGLAKCGKVEAAREVFDQM---PKKSSVSWN--- 173
             A ++F  M    SR   +T+ +L+     C   E    + +Q+    +KS +  +   
Sbjct: 188 RSAFRIFSSMQYDGSRPTEYTFGSLVT--TACSLTEPDVRLLEQIMCTIQKSGLLTDLFV 245

Query: 174 --AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL--LKE 229
              +++ + KSG ++ AR++F QM  RN ++ N ++ G        EA +LF  +  + +
Sbjct: 246 GSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMID 305

Query: 230 GLMPSHVTILSALSAVSGLAVLG--NGRWIHSFMVKHCF-DLDGVLGTSLIEMYSKCGSI 286
               S+V +LS+    S    +G   GR +H  ++     D    +G  L+ MY+KCGSI
Sbjct: 306 VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSI 365

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
             A  VF  + +K    W ++I GL  +G   +A+E +  MRR  + P + T I  L++C
Sbjct: 366 ADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
           +       G +     + +  I   V     L+ +    G+L + + I  SMP   ++V 
Sbjct: 426 ASLKWAKLGQQIHGESL-KLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVS 483

Query: 407 WMSLLSS 413
           W S++ +
Sbjct: 484 WNSIIGA 490



 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/422 (29%), Positives = 198/422 (46%), Gaps = 17/422 (4%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTL-PCVIKGCSRLHA-VQEGKQIH 64
           VSWN IIS Y        A  +F  M +    P  +T    V   CS     V+  +QI 
Sbjct: 172 VSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIM 231

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
             + K G   D FV S LV+ +AK G +  ARKVF++M  R+ V+ N L+ G  R    E
Sbjct: 232 CTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGE 291

Query: 125 VAMKLFDEMPSR---DAFTWTALLDG-----LAKCGKVEAAREVFDQMPKKSSVSW---- 172
            A KLF +M S       ++  LL       LA+   ++  REV   +     V +    
Sbjct: 292 EATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGI 351

Query: 173 -NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            N ++N Y K G I  AR++F  M  ++ +SWNSMI+G   NG F+EA+E ++ + +  +
Sbjct: 352 GNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           +P   T++S+LS+ + L     G+ IH   +K   DL+  +  +L+ +Y++ G +     
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 471

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLA-DQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
           +F ++       W +II  L     +  +A+  F+  +R G K + ITF  VL+A S   
Sbjct: 472 IFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLS 531

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
             + G +   + +    I         L+    + G +   + I   M  R + V W S+
Sbjct: 532 FGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSM 590

Query: 411 LS 412
           +S
Sbjct: 591 IS 592



 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 200/448 (44%), Gaps = 39/448 (8%)

Query: 36  DLLPDGFTLPCVI-KGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGL 94
           + +P  F   CV  +G +R          H  + K     D ++ ++L+N Y + G+   
Sbjct: 3   NCVPLSFVQSCVGHRGAARF--------FHSRLYKNRLDKDVYLCNNLINAYLETGDSVS 54

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFT-WTALLDGLAKCGK 153
           ARKVFD+M  R+ VSW  ++ GY+RNG  + A+    +M     F+   A +  L  C +
Sbjct: 55  ARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQE 114

Query: 154 VEA-----AREVFDQMPKKS----SVSWNAMINGYMKS-GKINLARQLFGQMPGRNLISW 203
           + +      R++   M K S    +V  N +I+ Y K  G +  A   FG +  +N +SW
Sbjct: 115 IGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSW 174

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV- 262
           NS+IS Y   G    A  +F  +  +G  P+  T  S ++    L    + R +   M  
Sbjct: 175 NSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTE-PDVRLLEQIMCT 233

Query: 263 --KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
             K     D  +G+ L+  ++K GS+  A  VF  +  +       ++VGL      ++A
Sbjct: 234 IQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEA 293

Query: 321 LELFMEMRR-IGMKPHAITFIGVLNACSHKGLVDE-----GNKCFDMMINEYKIVPTVEH 374
            +LFM+M   I + P   +++ +L++     L +E     G +    +I    +   V  
Sbjct: 294 TKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGI 351

Query: 375 YGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL--EIGEYAAHNLIE 432
              LV++  + G +  A+ +   M  + + V W S+++    +G     +  Y +    +
Sbjct: 352 GNGLVNMYAKCGSIADARRVFYFMTDK-DSVSWNSMITGLDQNGCFIEAVERYKSMRRHD 410

Query: 433 ADPDATGCYTLLSNIYAAAG-KWDKVSH 459
             P   G +TL+S++ + A  KW K+  
Sbjct: 411 ILP---GSFTLISSLSSCASLKWAKLGQ 435


>AT4G21065.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11245976-11247763 FORWARD
           LENGTH=595
          Length = 595

 Score =  405 bits (1040), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 335/569 (58%), Gaps = 18/569 (3%)

Query: 56  AVQEGKQIHGYVLKIGFGFD-----KFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVS 109
           ++ + +QIH + ++ G         K +   LV++ +    M  A KVF K+    +V  
Sbjct: 29  SITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSP-PPMSYAHKVFSKIEKPINVFI 87

Query: 110 WNSLIDGYARNGNVEVAMKLFDEMP-----SRDAFTWTALLDGLAKCGKVEAAREVFDQM 164
           WN+LI GYA  GN   A  L+ EM        D  T+  L+  +     V     +   +
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 165 PKKSSVSW----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
            +    S     N++++ Y   G +  A ++F +MP ++L++WNS+I+G+  NG+  EA+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 221 ELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMY 280
            L+  +  +G+ P   TI+S LSA + +  L  G+ +H +M+K     +      L+++Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 281 SKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITF 339
           ++CG +E A  +F  + +K    WT++IVGL ++G   +A+ELF  M    G+ P  ITF
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
           +G+L ACSH G+V EG + F  M  EYKI P +EH+GC+VD+L RAG +++A   I+SMP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 400 MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSH 459
           M+PN VIW +LL +   HG+ ++ E+A   +++ +P+ +G Y LLSN+YA+  +W  V  
Sbjct: 388 MQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQK 447

Query: 460 VREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPD 519
           +R+ M   GV K  G S+VE   +++ F++GDKSHPQ+ AIYAKL+EM+ +L+  G+VP 
Sbjct: 448 IRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQ 507

Query: 520 TSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLS 579
            S V                   ++AI+F L++   R+PI ++KNLRVC DCH   KL+S
Sbjct: 508 ISNVY-VDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVS 566

Query: 580 AIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            +Y REI+VRD SRFHHFKNG+CSC D+W
Sbjct: 567 KVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  165 bits (418), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/343 (31%), Positives = 184/343 (53%), Gaps = 22/343 (6%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           WN +I  Y     S  A  L+R+M    L+ PD  T P +IK  + +  V+ G+ IH  V
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           ++ GFG   +VQ+SL+++YA  G++  A KVFDKM ++D+V+WNS+I+G+A NG  E A+
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 128 KLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGY 179
            L+ EM S+    D FT  +LL   AK G +   + V   M K    ++  S N +++ Y
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL-LKEGLMPSHVTI 238
            + G++  A+ LF +M  +N +SW S+I G  +NG   EA+ELF+ +   EGL+P  +T 
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 239 LSALSAVSGLAVLGNG-----RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
           +  L A S   ++  G     R    + ++   +  G     ++++ ++ G ++ A    
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC----MVDLLARAGQVKKAYEYI 383

Query: 294 KAIA-NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           K++     +  W  ++    +HG  D  L  F  ++ + ++P+
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPN 424



 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 127/225 (56%), Gaps = 11/225 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  LV+WN +I+ +  N +  +AL L+ +M    + PDGFT+  ++  C+++ A+  G
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K++H Y++K+G   +    + L+++YA+ G +  A+ +FD+MVD++ VSW SLI G A N
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301

Query: 121 GNVEVAMKLFDEMPSRDAF-----TWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           G  + A++LF  M S +       T+  +L   + CG V+   E F +M ++  +     
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 361

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNG 214
            +  M++   ++G++  A +    MP + N++ W +++    ++G
Sbjct: 362 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 406


>AT3G29230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:11188803-11190605 FORWARD
           LENGTH=600
          Length = 600

 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 199/508 (39%), Positives = 310/508 (61%), Gaps = 4/508 (0%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +P +   N +I  +  N +   A  +F +M    L  D FT P ++K CS    +   
Sbjct: 77  VQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVV 136

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGL--ARKVFDKMVDRDVVSWNSLIDGYA 118
           K +H ++ K+G   D +V ++L++ Y++ G +G+  A K+F+KM +RD VSWNS++ G  
Sbjct: 137 KMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLV 196

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMING 178
           + G +  A +LFDEMP RD  +W  +LDG A+C ++  A E+F++MP++++VSW+ M+ G
Sbjct: 197 KAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMG 256

Query: 179 YMKSGKINLARQLFGQMP--GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           Y K+G + +AR +F +MP   +N+++W  +I+GY   G   EA  L + ++  GL     
Sbjct: 257 YSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAA 316

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
            ++S L+A +   +L  G  IHS + +     +  +  +L++MY+KCG+++ A  VF  I
Sbjct: 317 AVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDI 376

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
             K L  W  ++ GLG+HG   +A+ELF  MRR G++P  +TFI VL +C+H GL+DEG 
Sbjct: 377 PKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGI 436

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
             F  M   Y +VP VEHYGCLVD+L R G L++A  ++++MPM PN VIW +LL + R 
Sbjct: 437 DYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRM 496

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           H  ++I +    NL++ DP   G Y+LLSNIYAAA  W+ V+ +R  MK  GV K +G S
Sbjct: 497 HNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGAS 556

Query: 477 IVEHRGKLNRFIVGDKSHPQTKAIYAKL 504
            VE    ++ F V DKSHP++  IY  L
Sbjct: 557 SVELEDGIHEFTVFDKSHPKSDQIYQML 584



 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 181/412 (43%), Gaps = 87/412 (21%)

Query: 51  CSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSW 110
           C+ L+ V   KQ+H  +++     D  +   L++  +   +  LA +VF+++ + +V   
Sbjct: 29  CANLNQV---KQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLC 85

Query: 111 NSLIDGYARNGNVEVAMKLFDEMP------------------------------------ 134
           NSLI  +A+N     A  +F EM                                     
Sbjct: 86  NSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEK 145

Query: 135 ---SRDAFTWTALLDGLAKCG--KVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLAR 189
              S D +   AL+D  ++CG   V  A ++F++M ++ +VSWN+M+ G +K+G++  AR
Sbjct: 146 LGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDAR 205

Query: 190 QLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLA 249
           +LF +MP R+LISWN+M+ GY       +A ELFE       MP   T+           
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEK------MPERNTV----------- 248

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK--AIANKKLGHWTAI 307
                 W                 ++++  YSK G +E A  +F    +  K +  WT I
Sbjct: 249 -----SW-----------------STMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTII 286

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I G    GL  +A  L  +M   G+K  A   I +L AC+  GL+  G +   ++     
Sbjct: 287 IAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSIL-KRSN 345

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           +         L+D+  + G+L++A ++   +P + + V W ++L     HG+
Sbjct: 346 LGSNAYVLNALLDMYAKCGNLKKAFDVFNDIP-KKDLVSWNTMLHGLGVHGH 396



 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/296 (20%), Positives = 132/296 (44%), Gaps = 16/296 (5%)

Query: 145 LDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNL 200
           L  L KC  +   +++  Q+ +++          +I+      + NLA ++F Q+   N+
Sbjct: 23  LQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNV 82

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
              NS+I  +  N +  +A  +F  + + GL   + T    L A SG + L   + +H+ 
Sbjct: 83  HLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNH 142

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCG--SIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
           + K     D  +  +LI+ YS+CG   +  A+ +F+ ++ +    W +++ GL   G   
Sbjct: 143 IEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELR 202

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL 378
            A  LF EM +  +    I++  +L+  +    + +  + F+ M     +      +  +
Sbjct: 203 DARRLFDEMPQRDL----ISWNTMLDGYARCREMSKAFELFEKMPERNTV-----SWSTM 253

Query: 379 VDILCRAGHLQQAKNIIESMPMRP-NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
           V    +AG ++ A+ + + MP+   N V W  +++     G L+  +     ++ +
Sbjct: 254 VMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309


>AT3G11460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:3608250-3610121 FORWARD
           LENGTH=623
          Length = 623

 Score =  402 bits (1033), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 341/611 (55%), Gaps = 19/611 (3%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN+ +    +    ++++ L+R ML     PD F+ P ++K C+ L     G+Q+H +V 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVS--WNSLIDGYARNGNVEVA 126
           K G   + FV ++L++MY K G +  ARKVF++      +S  +N+LI GY  N  V  A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 127 MKLFDEMPSRDAFTWTALLDGLAKCGKVEA----AREVFDQMPK---KSSVS-WNAMING 178
             +F  M        +  + GL     V       R +  Q  K    S V+  N+ I  
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           YMK G +   R+LF +MP + LI+WN++ISGY  NG   + +EL+E +   G+ P   T+
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
           +S LS+ + L     G  +   +  + F  +  +  + I MY++CG++  A AVF  +  
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPV 320

Query: 299 KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKC 358
           K L  WTA+I   GMHG+ +  L LF +M + G++P    F+ VL+ACSH GL D+G + 
Sbjct: 321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 380

Query: 359 FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           F  M  EYK+ P  EHY CLVD+L RAG L +A   IESMP+ P+  +W +LL + + H 
Sbjct: 381 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHK 440

Query: 419 NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
           N+++ E A   +IE +P+  G Y L+SNIY+ +   + +  +R MM+ER   K  G S V
Sbjct: 441 NVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 500

Query: 479 EHRGKLNRFIVGDKSHPQTKAIYAKLREMSKK-LKLAGHVPDTSQVLXXXXXXXXXXXXX 537
           EH+G+++ F+ GD+SH QT+ ++  L E+    ++LAG++ D  +               
Sbjct: 501 EHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNM-DCDR-------GEEVSSTT 552

Query: 538 XXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHF 597
                RLAI+FG+LN    T I ++KNLRVC DCH   K +S I  R+ +VRD SRFH+F
Sbjct: 553 REHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYF 612

Query: 598 KNGTCSCNDFW 608
           K+G CSC D+W
Sbjct: 613 KDGVCSCKDYW 623



 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 167/343 (48%), Gaps = 12/343 (3%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V +N +IS Y  N +  DA  +FR+M    +  D  T+  ++  C+    +  G+ +HG 
Sbjct: 122 VCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQ 181

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
            +K G   +  V +S + MY K G +   R++FD+M  + +++WN++I GY++NG     
Sbjct: 182 CVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDV 241

Query: 127 MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMING 178
           ++L+++M S     D FT  ++L   A  G  +   EV   +     V      NA I+ 
Sbjct: 242 LELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISM 301

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y + G +  AR +F  MP ++L+SW +MI  Y ++G     + LF+ ++K G+ P     
Sbjct: 302 YARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVF 361

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS-LIEMYSKCGSIESALAVFKAIA 297
           +  LSA S   +   G  +   M +      G    S L+++  + G ++ A+   +++ 
Sbjct: 362 VMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMP 421

Query: 298 NKKLGH-WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
            +  G  W A++    +H   D A   F ++  I  +P+ I +
Sbjct: 422 VEPDGAVWGALLGACKIHKNVDMAELAFAKV--IEFEPNNIGY 462



 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 9/200 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L++WN +IS Y  N  + D L L+ QM    + PD FTL  V+  C+ L A + G ++  
Sbjct: 222 LITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGK 281

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            V   GF  + FV ++ ++MYA+ G +  AR VFD M  + +VSW ++I  Y  +G  E+
Sbjct: 282 LVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEI 341

Query: 126 AMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMI 176
            + LFD+M  R    D   +  +L   +  G  +   E+F  M ++  +      ++ ++
Sbjct: 342 GLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLV 401

Query: 177 NGYMKSGKINLARQLFGQMP 196
           +   ++G+++ A +    MP
Sbjct: 402 DLLGRAGRLDEAMEFIESMP 421


>AT3G24000.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:8672774-8674881 FORWARD
           LENGTH=665
          Length = 665

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/575 (36%), Positives = 328/575 (57%), Gaps = 34/575 (5%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD 106
           ++K C+    + +G+ +H ++L+  F  D  + ++L+NMYAK G +  ARKVF+KM  RD
Sbjct: 66  LLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRD 125

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLA------------- 149
            V+W +LI GY+++     A+  F++M     S + FT ++++   A             
Sbjct: 126 FVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 150 ---KCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSM 206
              KCG        FD      S    A+++ Y + G ++ A+ +F  +  RN +SWN++
Sbjct: 186 FCVKCG--------FDSNVHVGS----ALLDLYTRYGLMDDAQLVFDALESRNDVSWNAL 233

Query: 207 ISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF 266
           I+G+       +A+ELF+ +L++G  PSH +  S   A S    L  G+W+H++M+K   
Sbjct: 234 IAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGE 293

Query: 267 DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFME 326
            L    G +L++MY+K GSI  A  +F  +A + +  W +++     HG   +A+  F E
Sbjct: 294 KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEE 353

Query: 327 MRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAG 386
           MRR+G++P+ I+F+ VL ACSH GL+DEG   +++M  +  IVP   HY  +VD+L RAG
Sbjct: 354 MRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAG 412

Query: 387 HLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSN 446
            L +A   IE MP+ P   IW +LL++ R H N E+G YAA ++ E DPD  G + +L N
Sbjct: 413 DLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYN 472

Query: 447 IYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLRE 506
           IYA+ G+W+  + VR+ MKE GV K+  CS VE    ++ F+  D+ HPQ + I  K  E
Sbjct: 473 IYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEE 532

Query: 507 MSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLR 566
           +  K+K  G+VPDTS V+                  ++A++F LLN    + I I KN+R
Sbjct: 533 VLAKIKELGYVPDTSHVI-VHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIR 591

Query: 567 VCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGT 601
           VC DCH   KL S + GREIIVRD +RFHHFK+ +
Sbjct: 592 VCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  165 bits (418), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 16/353 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   V+W  +IS Y  + R  DALL F QML     P+ FTL  VIK  +       G
Sbjct: 121 MPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCG 180

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+HG+ +K GF  +  V S+L+++Y ++G M  A+ VFD +  R+ VSWN+LI G+AR 
Sbjct: 181 HQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARR 240

Query: 121 GNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SV 170
              E A++LF  M      PS   F++ +L    +  G +E  + V   M K      + 
Sbjct: 241 SGTEKALELFQGMLRDGFRPSH--FSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAF 298

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           + N +++ Y KSG I+ AR++F ++  R+++SWNS+++ Y  +G   EA+  FE + + G
Sbjct: 299 AGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVG 358

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P+ ++ LS L+A S   +L  G   +  M K     +     +++++  + G +  AL
Sbjct: 359 IRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 291 AVFKAIANKKLGH-WTAIIVGLGMHG---LADQALELFMEMRRIGMKPHAITF 339
              + +  +     W A++    MH    L   A E   E+      PH I +
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILY 471


>AT5G13230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4222514-4224982 FORWARD
           LENGTH=822
          Length = 822

 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 338/613 (55%), Gaps = 12/613 (1%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V W  I+SCYV N    D+L L   M     +P+ +T    +K    L A    K +HG
Sbjct: 212 IVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHG 271

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            +LK  +  D  V   L+ +Y + G+M  A KVF++M   DVV W+ +I  + +NG    
Sbjct: 272 QILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNE 331

Query: 126 AMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-----NAMI 176
           A+ LF  M       + FT +++L+G A  GK     E    +  K          NA+I
Sbjct: 332 AVDLFIRMREAFVVPNEFTLSSILNGCA-IGKCSGLGEQLHGLVVKVGFDLDIYVSNALI 390

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           + Y K  K++ A +LF ++  +N +SWN++I GY+  G   +A  +F   L+  +  + V
Sbjct: 391 DVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEV 450

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T  SAL A + LA +  G  +H   +K        +  SLI+MY+KCG I+ A +VF  +
Sbjct: 451 TFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEM 510

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
               +  W A+I G   HGL  QAL +   M+    KP+ +TF+GVL+ CS+ GL+D+G 
Sbjct: 511 ETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQ 570

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
           +CF+ MI ++ I P +EHY C+V +L R+G L +A  +IE +P  P+ +IW ++LS+S N
Sbjct: 571 ECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMN 630

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
             N E    +A  +++ +P     Y L+SN+YA A +W  V+ +R+ MKE GV K+ G S
Sbjct: 631 QNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLS 690

Query: 477 IVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXX 536
            +EH+G ++ F VG   HP  K I   L  ++ K   AG+VPD + VL            
Sbjct: 691 WIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVL-LDMDDEEKDKR 749

Query: 537 XXXXXXRLAISFGLLNM-ERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFH 595
                 RLA+++GL+ M   R  I IMKNLR+C+DCH+  K++S+I  R++++RD +RFH
Sbjct: 750 LWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFH 809

Query: 596 HFKNGTCSCNDFW 608
           HF  G CSC D W
Sbjct: 810 HFHAGVCSCGDHW 822



 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/450 (25%), Positives = 209/450 (46%), Gaps = 41/450 (9%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHD-----LLPDGFTLPCVIKGCSRLHAVQEG 60
           L + N++++ YV      DAL LF +M   +      L  G+     I   SRLH  +EG
Sbjct: 84  LFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQDPIGLYSRLH--REG 141

Query: 61  KQ------------------------IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLAR 96
            +                        +H  ++K+G+  + FV ++L+N Y+  G +  AR
Sbjct: 142 HELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 97  KVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCG 152
            VF+ ++ +D+V W  ++  Y  NG  E ++KL   M       + +T+   L      G
Sbjct: 202 TVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLG 261

Query: 153 KVEAAREVFDQMPKKSSV----SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMIS 208
             + A+ V  Q+ K   V        ++  Y + G ++ A ++F +MP  +++ W+ MI+
Sbjct: 262 AFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIA 321

Query: 209 GYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL 268
            +  NG   EA++LF  + +  ++P+  T+ S L+  +     G G  +H  +VK  FDL
Sbjct: 322 RFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDL 381

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
           D  +  +LI++Y+KC  +++A+ +F  +++K    W  +IVG    G   +A  +F E  
Sbjct: 382 DIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREAL 441

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHL 388
           R  +    +TF   L AC+    +D G +   + I        V     L+D+  + G +
Sbjct: 442 RNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNN-AKKVAVSNSLIDMYAKCGDI 500

Query: 389 QQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           + A+++   M    +   W +L+S    HG
Sbjct: 501 KFAQSVFNEMET-IDVASWNALISGYSTHG 529



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 160/306 (52%), Gaps = 11/306 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K  +V W+ +I+ +  N   N+A+ LF +M    ++P+ FTL  ++ GC+       G
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLG 367

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+HG V+K+GF  D +V ++L+++YAK  +M  A K+F ++  ++ VSWN++I GY   
Sbjct: 368 EQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENL 427

Query: 121 GNVEVAMKLFDE----MPSRDAFTWTALLDGLAKCGKVEAAREVF-----DQMPKKSSVS 171
           G    A  +F E      S    T+++ L   A    ++   +V          KK +VS
Sbjct: 428 GEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVS 487

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            N++I+ Y K G I  A+ +F +M   ++ SWN++ISGY  +G   +A+ + +++     
Sbjct: 488 -NSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDC 546

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVK-HCFDLDGVLGTSLIEMYSKCGSIESAL 290
            P+ +T L  LS  S   ++  G+     M++ H  +      T ++ +  + G ++ A+
Sbjct: 547 KPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAM 606

Query: 291 AVFKAI 296
            + + I
Sbjct: 607 KLIEGI 612



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/385 (24%), Positives = 180/385 (46%), Gaps = 10/385 (2%)

Query: 40  DGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVF 99
           D      +++ C + +     K IH  +LK G   D F  + L+N Y K G    A  +F
Sbjct: 48  DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 100 DKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAARE 159
           D+M +R+ VS+ +L  GYA    + +  +L  E    +   +T+ L       K E    
Sbjct: 108 DEMPERNNVSFVTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPW 167

Query: 160 VFDQMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGR 215
           +   + K     ++    A+IN Y   G ++ AR +F  +  ++++ W  ++S Y  NG 
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227

Query: 216 FLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS 275
           F ++++L   +   G MP++ T  +AL A  GL      + +H  ++K C+ LD  +G  
Sbjct: 228 FEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           L+++Y++ G +  A  VF  +    +  W+ +I     +G  ++A++LF+ MR   + P+
Sbjct: 288 LLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPN 347

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY--GCLVDILCRAGHLQQAKN 393
             T   +LN C+       G +   +++   K+   ++ Y    L+D+  +   +  A  
Sbjct: 348 EFTLSSILNGCAIGKCSGLGEQLHGLVV---KVGFDLDIYVSNALIDVYAKCEKMDTAVK 404

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHG 418
           +   +  + N+V W +++    N G
Sbjct: 405 LFAELSSK-NEVSWNTVIVGYENLG 428


>AT1G16480.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:5625742-5628605 REVERSE
           LENGTH=928
          Length = 928

 Score =  399 bits (1026), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 343/610 (56%), Gaps = 12/610 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    L+SWN +++ +V++ RS DAL L   M+      +  T    +  C      ++G
Sbjct: 305 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 364

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +HG V+  G  +++ + ++LV+MY K GEM  +R+V  +M  RDVV+WN+LI GYA +
Sbjct: 365 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 424

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDG------LAKCGKVEAAREVFDQMPKKSSV 170
            + + A+  F  M     S +  T  ++L        L + GK   A  V         V
Sbjct: 425 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 484

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             N++I  Y K G ++ ++ LF  +  RN+I+WN+M++    +G   E ++L   +   G
Sbjct: 485 K-NSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFG 543

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           +     +    LSA + LAVL  G+ +H   VK  F+ D  +  +  +MYSKCG I   +
Sbjct: 544 VSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVV 603

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +     N+ L  W  +I  LG HG  ++    F EM  +G+KP  +TF+ +L ACSH G
Sbjct: 604 KMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGG 663

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LVD+G   +DM+  ++ + P +EH  C++D+L R+G L +A+  I  MPM+PN ++W SL
Sbjct: 664 LVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSL 723

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L+S + HGNL+ G  AA NL + +P+    Y L SN++A  G+W+ V +VR+ M  + + 
Sbjct: 724 LASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIK 783

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K   CS V+ + K++ F +GD++HPQT  IYAKL ++ K +K +G+V DTSQ L      
Sbjct: 784 KKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLEDIKKLIKESGYVADTSQAL-QDTDE 842

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       RLA+++ L++    + +RI KNLR+C+DCH+V K +S + GR I++RD
Sbjct: 843 EQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRD 902

Query: 591 NSRFHHFKNG 600
             RFHHF+ G
Sbjct: 903 QYRFHHFERG 912



 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/429 (26%), Positives = 204/429 (47%), Gaps = 9/429 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +VSW  ++  Y       + + +++ M    +  +  ++  VI  C  L     G
Sbjct: 103 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 162

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QI G V+K G      V++SL++M    G +  A  +FD+M +RD +SWNS+   YA+N
Sbjct: 163 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 222

Query: 121 GNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----W 172
           G++E + ++F  M       ++ T + LL  L      +  R +   + K    S     
Sbjct: 223 GHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 282

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N ++  Y  +G+   A  +F QMP ++LISWNS+++ +  +GR L+A+ L   ++  G  
Sbjct: 283 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 342

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
            ++VT  SAL+A         GR +H  +V      + ++G +L+ MY K G +  +  V
Sbjct: 343 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 402

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
              +  + +  W A+I G       D+AL  F  MR  G+  + IT + VL+AC   G +
Sbjct: 403 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 462

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            E  K     I              L+ +  + G L  ++++   +  R N + W ++L+
Sbjct: 463 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLA 521

Query: 413 SSRNHGNLE 421
           ++ +HG+ E
Sbjct: 522 ANAHHGHGE 530



 Score =  155 bits (393), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 207/439 (47%), Gaps = 26/439 (5%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAV-QEGKQIHG 65
           VSWN ++S  V      + +  FR+M    + P  F +  ++  C R  ++ +EG Q+HG
Sbjct: 7   VSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHG 66

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           +V K G   D +V ++++++Y  +G +  +RKVF++M DR+VVSW SL+ GY+  G  E 
Sbjct: 67  FVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEE 126

Query: 126 AMKLFDEMPSRD-AFTWTALLDGLAKCG--KVEA-AREVFDQMPKKSSVS----WNAMIN 177
            + ++  M          ++   ++ CG  K E+  R++  Q+ K    S     N++I+
Sbjct: 127 VIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLIS 186

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
                G ++ A  +F QM  R+ ISWNS+ + Y  NG   E+  +F ++ +     +  T
Sbjct: 187 MLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTT 246

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           + + LS +  +     GR IH  +VK  FD    +  +L+ MY+  G    A  VFK + 
Sbjct: 247 VSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP 306

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            K L  W +++      G +  AL L   M   G   + +TF   L AC      ++G  
Sbjct: 307 TKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRI 366

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
              +++        +     LV +  + G + +++ ++  MP R + V W +L       
Sbjct: 367 LHGLVVVSGLFYNQIIG-NALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNAL------- 417

Query: 418 GNLEIGEYAAHNLIEADPD 436
               IG YA     + DPD
Sbjct: 418 ----IGGYAE----DEDPD 428



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 154/329 (46%), Gaps = 23/329 (6%)

Query: 105 RDVVSWNSLIDGYARNGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKV-EAA 157
           R+ VSWN+++ G  R G     M+ F +M      PS  +F   +L+    + G +    
Sbjct: 4   RNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPS--SFVIASLVTACGRSGSMFREG 61

Query: 158 REVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN 213
            +V   + K   +S      A+++ Y   G ++ +R++F +MP RN++SW S++ GY   
Sbjct: 62  VQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDK 121

Query: 214 GRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
           G   E +++++ +  EG+  +  ++   +S+   L     GR I   +VK   +    + 
Sbjct: 122 GEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVE 181

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            SLI M    G+++ A  +F  ++ +    W +I      +G  +++  +F  MRR   +
Sbjct: 182 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDE 241

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR----AGHLQ 389
            ++ T   +L+   H   VD  ++ +   I+   +    +   C+ + L R    AG   
Sbjct: 242 VNSTTVSTLLSVLGH---VD--HQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSV 296

Query: 390 QAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           +A  + + MP + + + W SL++S  N G
Sbjct: 297 EANLVFKQMPTK-DLISWNSLMASFVNDG 324



 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 120/234 (51%), Gaps = 15/234 (6%)

Query: 195 MPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV--SGLAVLG 252
           MP RN +SWN+M+SG    G +LE ME F  +   G+ PS   I S ++A   SG ++  
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSG-SMFR 59

Query: 253 NGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLG 312
            G  +H F+ K     D  + T+++ +Y   G +  +  VF+ + ++ +  WT+++VG  
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 313 MHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE--GNKCFDMMIN---EYK 367
             G  ++ ++++  MR  G+  +  +   V+++C    L DE  G +    ++    E K
Sbjct: 120 DKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGL--LKDESLGRQIIGQVVKSGLESK 177

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           +   VE+   L+ +L   G++  A  I + M  R + + W S+ ++   +G++E
Sbjct: 178 L--AVEN--SLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAYAQNGHIE 226


>AT5G44230.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17814336-17816309 FORWARD
           LENGTH=657
          Length = 657

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 332/593 (55%), Gaps = 46/593 (7%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEM--GLARKVFDKMVDRDVVSWNSLIDGYA 118
           KQIHG+VL+ G     ++ + L+    K G      AR+V + +  R+   W ++I GYA
Sbjct: 66  KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGYA 125

Query: 119 RNGNVEVAMKLFDEMPSRD----AFTWTALL----------------------------- 145
             G  + A+ ++  M   +    +FT++ALL                             
Sbjct: 126 IEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVY 185

Query: 146 ------DGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRN 199
                 D   KC  ++ AR+VFD+MP++  +SW  +I  Y + G +  A +LF  +P ++
Sbjct: 186 VGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKD 245

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
           +++W +M++G+  N +  EA+E F+ + K G+    VT+   +SA + L           
Sbjct: 246 MVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQ 305

Query: 260 FMVKHCFDLDG--VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLA 317
              K  +      V+G++LI+MYSKCG++E A+ VF ++ NK +  ++++I+GL  HG A
Sbjct: 306 IAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRA 365

Query: 318 DQALELFMEM-RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
            +AL LF  M  +  +KP+ +TF+G L ACSH GLVD+G + FD M   + + PT +HY 
Sbjct: 366 QEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYT 425

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
           C+VD+L R G LQ+A  +I++M + P+  +W +LL + R H N EI E AA +L E +PD
Sbjct: 426 CMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPD 485

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS-IVEHRGKLNRFIVGDKSHP 495
             G Y LLSN+YA+AG W  V  VR+++KE+G+ K    S +V+  G++++F  G+ +HP
Sbjct: 486 IIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHP 545

Query: 496 QTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMER 555
            +  I  KL E+ ++L + G+ PD S V                   +LA++F LL   R
Sbjct: 546 MSNKIQDKLEELVERLTVLGYQPDLSSV-PYDVSDNAKRLILIQHTEKLALAFSLLTTNR 604

Query: 556 RTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            + I IMKNLR+C DCH   +L S + G+ II+RDN RFHHF++G CSC DFW
Sbjct: 605 DSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  155 bits (393), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 178/369 (48%), Gaps = 51/369 (13%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           W  +I  Y    + ++A+ ++  M   ++ P  FT   ++K C  +  +  G+Q H    
Sbjct: 117 WTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQFHAQTF 176

Query: 69  KI-GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           ++ GF F  +V +++++MY K   +  ARKVFD+M +RDV+SW  LI  YAR GN+E A 
Sbjct: 177 RLRGFCF-VYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAA 235

Query: 128 KLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM----------------------- 164
           +LF+ +P++D   WTA++ G A+  K + A E FD+M                       
Sbjct: 236 ELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLG 295

Query: 165 ------------------PKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSM 206
                             P    V  +A+I+ Y K G +  A  +F  M  +N+ +++SM
Sbjct: 296 ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSM 355

Query: 207 ISGYQLNGRFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC 265
           I G   +GR  EA+ LF  ++ +  + P+ VT + AL A S   ++  GR +   M +  
Sbjct: 356 ILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQ-T 414

Query: 266 FDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANKKLGH-WTAIIVGLGMHG---LADQ 319
           F +       T ++++  + G ++ AL + K ++ +  G  W A++    +H    +A+ 
Sbjct: 415 FGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEI 474

Query: 320 ALELFMEMR 328
           A E   E+ 
Sbjct: 475 AAEHLFELE 483



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 144/344 (41%), Gaps = 47/344 (13%)

Query: 130 FDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKI 185
           F E+ ++     ++L+  L  C  +   +++   + +K    S      +I    K G  
Sbjct: 38  FSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVP 97

Query: 186 --NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALS 243
               AR++   +  RN   W ++I GY + G+F EA+ ++  + KE + P   T  + L 
Sbjct: 98  MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157

Query: 244 AVSGLAVLGNGRWIHSFMVKHCFDLDGV----LGTSLIEMYSKC---------------- 283
           A   +  L  GR  H+      F L G     +G ++I+MY KC                
Sbjct: 158 ACGTMKDLNLGRQFHA----QTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPER 213

Query: 284 ---------------GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
                          G++E A  +F+++  K +  WTA++ G   +    +ALE F  M 
Sbjct: 214 DVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRME 273

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGH 387
           + G++   +T  G ++AC+  G     ++   +     Y     V     L+D+  + G+
Sbjct: 274 KSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGN 333

Query: 388 LQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLI 431
           +++A N+  SM  + N   + S++     HG  +   +  H ++
Sbjct: 334 VEEAVNVFMSMNNK-NVFTYSSMILGLATHGRAQEALHLFHYMV 376


>AT5G06540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1999181-2001049 REVERSE
           LENGTH=622
          Length = 622

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 342/609 (56%), Gaps = 51/609 (8%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGE-------MGLARKVF 99
           +++ CS   +  + K IHG++L+     D FV S L+ +             +G A  +F
Sbjct: 18  LLQSCS---SFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIF 74

Query: 100 DKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM-PSR---------------------- 136
            ++ + ++  +N LI  ++       A   + +M  SR                      
Sbjct: 75  SQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVL 134

Query: 137 ----------------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYM 180
                           D +   +L+   A CG + AA  +F QM  +  VSW +M+ GY 
Sbjct: 135 VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYC 194

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           K G +  AR++F +MP RNL +W+ MI+GY  N  F +A++LFE + +EG++ +   ++S
Sbjct: 195 KCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVS 254

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
            +S+ + L  L  G   + ++VK    ++ +LGT+L++M+ +CG IE A+ VF+ +    
Sbjct: 255 VISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETD 314

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
              W++II GL +HG A +A+  F +M  +G  P  +TF  VL+ACSH GLV++G + ++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
            M  ++ I P +EHYGC+VD+L RAG L +A+N I  M ++PN  I  +LL + + + N 
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434

Query: 421 EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEH 480
           E+ E   + LI+  P+ +G Y LLSNIYA AG+WDK+  +R+MMKE+ V K  G S++E 
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEI 494

Query: 481 RGKLNRFIVG-DKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXX 539
            GK+N+F +G D+ HP+   I  K  E+  K++L G+  +T                   
Sbjct: 495 DGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAF-FDVDEEEKESSIHM 553

Query: 540 XXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKN 599
              +LAI++G++  +  T IRI+KNLRVC DCH VTKL+S +YGRE+IVRD +RFHHF+N
Sbjct: 554 HSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRN 613

Query: 600 GTCSCNDFW 608
           G CSC D+W
Sbjct: 614 GVCSCRDYW 622



 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 199/440 (45%), Gaps = 80/440 (18%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +  P L  +NL+I C+      + A   + QML   + PD  T P +IK  S +  V  G
Sbjct: 77  IQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVG 136

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q H  +++ GF  D +V++SLV+MYA  G +  A ++F +M  RDVVSW S++ GY + 
Sbjct: 137 EQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKC 196

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--------- 171
           G VE A ++FDEMP R+ FTW+ +++G AK    E A ++F+ M ++  V+         
Sbjct: 197 GMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVI 256

Query: 172 ------------------------------WNAMINGYMKSGKINLARQLFGQMPGRNLI 201
                                           A+++ + + G I  A  +F  +P  + +
Sbjct: 257 SSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSL 316

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           SW+S+I G  ++G   +AM  F  ++  G +P  VT  + LSA S           H  +
Sbjct: 317 SWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACS-----------HGGL 365

Query: 262 VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
           V+         G  + E   K   IE            +L H+  I+  LG  G   +A 
Sbjct: 366 VEK--------GLEIYENMKKDHGIEP-----------RLEHYGCIVDMLGRAGKLAEAE 406

Query: 322 ELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV-- 379
              ++M    +KP+A     +L AC      +   +  +M+I   K+ P  EH G  V  
Sbjct: 407 NFILKMH---VKPNAPILGALLGACKIYKNTEVAERVGNMLI---KVKP--EHSGYYVLL 458

Query: 380 -DILCRAGHLQQAKNIIESM 398
            +I   AG   + +++ + M
Sbjct: 459 SNIYACAGQWDKIESLRDMM 478


>AT2G02980.1 | Symbols: OTP85 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:868468-870279 FORWARD
           LENGTH=603
          Length = 603

 Score =  395 bits (1014), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 332/569 (58%), Gaps = 14/569 (2%)

Query: 52  SRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAK---WGEMGLARKVFDKMVDRDVV 108
           S+ ++++E  QI  Y +K       FV + L+N   +      M  AR +F+ M + D+V
Sbjct: 37  SKCNSLRELMQIQAYAIKSHIEDVSFV-AKLINFCTESPTESSMSYARHLFEAMSEPDIV 95

Query: 109 SWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM 164
            +NS+  GY+R  N      LF E+       D +T+ +LL   A    +E  R++   +
Sbjct: 96  IFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLH-CL 154

Query: 165 PKKSSVSWN-----AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA 219
             K  +  N      +IN Y +   ++ AR +F ++    ++ +N+MI+GY    R  EA
Sbjct: 155 SMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEA 214

Query: 220 MELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEM 279
           + LF  +  + L P+ +T+LS LS+ + L  L  G+WIH +  KH F     + T+LI+M
Sbjct: 215 LSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDM 274

Query: 280 YSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
           ++KCGS++ A+++F+ +  K    W+A+IV    HG A++++ +F  MR   ++P  ITF
Sbjct: 275 FAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITF 334

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
           +G+LNACSH G V+EG K F  M++++ IVP+++HYG +VD+L RAG+L+ A   I+ +P
Sbjct: 335 LGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLP 394

Query: 400 MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSH 459
           + P  ++W  LL++  +H NL++ E  +  + E D    G Y +LSN+YA   KW+ V  
Sbjct: 395 ISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDS 454

Query: 460 VREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPD 519
           +R++MK+R  +K  GCS +E    ++ F  GD     T  ++  L EM K+LKL+G+VPD
Sbjct: 455 LRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPD 514

Query: 520 TSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLS 579
           TS V+                  +LAI+FGLLN    T IR++KNLRVC DCH   KL+S
Sbjct: 515 TSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLIS 574

Query: 580 AIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            I+GR++++RD  RFHHF++G CSC DFW
Sbjct: 575 LIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  139 bits (351), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 158/302 (52%), Gaps = 17/302 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +P +V +N +   Y       +   LF ++L   +LPD +T P ++K C+   A++EG
Sbjct: 89  MSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEG 148

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+H   +K+G   + +V  +L+NMY +  ++  AR VFD++V+  VV +N++I GYAR 
Sbjct: 149 RQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARR 208

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW---- 172
                A+ LF EM  +    +  T  ++L   A  G ++  + +     K S   +    
Sbjct: 209 NRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVN 268

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            A+I+ + K G ++ A  +F +M  ++  +W++MI  Y  +G+  ++M +FE +  E + 
Sbjct: 269 TALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQ 328

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT-----SLIEMYSKCGSIE 287
           P  +T L  L+A S    +  GR   S MV       G++ +     S++++ S+ G++E
Sbjct: 329 PDEITFLGLLNACSHTGRVEEGRKYFSQMVSKF----GIVPSIKHYGSMVDLLSRAGNLE 384

Query: 288 SA 289
            A
Sbjct: 385 DA 386


>AT1G31430.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:11254025-11255737 REVERSE
           LENGTH=570
          Length = 570

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/552 (36%), Positives = 313/552 (56%), Gaps = 44/552 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +  P+L+ +N ++            L LF ++    L PD FTLP V+K   RL  V EG
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +++HGY +K G  FD +V +SL+ MYA  G++ +  KVFD+M  RDVVSWN LI  Y  N
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125

Query: 121 GNVEVAMKLFDEMPSRDAFTW--------------------------------------- 141
           G  E A+ +F  M       +                                       
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185

Query: 142 TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI 201
            AL+D   KCG ++ AR VFD M  K+   W +M+ GY+ +G+I+ AR LF + P ++++
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
            W +M++GY    RF EA+ELF  +   G+ P +  ++S L+  +    L  G+WIH ++
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305

Query: 262 VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
            ++   +D V+GT+L++MY+KCG IE+AL VF  I  +    WT++I GL M+G++ +AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365

Query: 322 ELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDI 381
           +L+ EM  +G++  AITF+ VL AC+H G V EG K F  M   + + P  EH  CL+D+
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425

Query: 382 LCRAGHLQQAKNIIESMPMRPNKV---IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDAT 438
           LCRAG L +A+ +I+ M    ++    ++ SLLS++RN+GN++I E  A  L + +   +
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485

Query: 439 GCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDK--SHPQ 496
             +TLL+++YA+A +W+ V++VR  MK+ G+ K  GCS +E  G  + FIVGD   SHP+
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545

Query: 497 TKAIYAKLREMS 508
              I + L + +
Sbjct: 546 MDEINSMLHQTT 557


>AT3G13770.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4519647-4521533 FORWARD
           LENGTH=628
          Length = 628

 Score =  393 bits (1010), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 351/613 (57%), Gaps = 24/613 (3%)

Query: 11  LIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKI 70
           L IS    N R  +ALL    ML  ++   G+    ++  C    A+++G+++H +++K 
Sbjct: 25  LPISQLCSNGRLQEALLEM-AMLGPEMGFHGYD--ALLNACLDKRALRDGQRVHAHMIKT 81

Query: 71  GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLF 130
            +    ++++ L+  Y K   +  ARKV D+M +++VVSW ++I  Y++ G+   A+ +F
Sbjct: 82  RYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVF 141

Query: 131 DEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN---------AMIN 177
            EM   D     FT+  +L    +   +   +++   +     V WN         ++++
Sbjct: 142 AEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLI-----VKWNYDSHIFVGSSLLD 196

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K+G+I  AR++F  +P R+++S  ++I+GY   G   EA+E+F  L  EG+ P++VT
Sbjct: 197 MYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVT 256

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
             S L+A+SGLA+L +G+  H  +++       VL  SLI+MYSKCG++  A  +F  + 
Sbjct: 257 YASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMP 316

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMR-RIGMKPHAITFIGVLNACSHKGLVDEGN 356
            +    W A++VG   HGL  + LELF  MR    +KP A+T + VL+ CSH  + D G 
Sbjct: 317 ERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGL 376

Query: 357 KCFDMMI-NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
             FD M+  EY   P  EHYGC+VD+L RAG + +A   I+ MP +P   +  SLL + R
Sbjct: 377 NIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACR 436

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
            H +++IGE     LIE +P+  G Y +LSN+YA+AG+W  V++VR MM ++ V K+ G 
Sbjct: 437 VHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGR 496

Query: 476 SIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXX 535
           S ++H   L+ F   D++HP+ + + AK++E+S K+K AG+VPD S VL           
Sbjct: 497 SWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVL-YDVDEEQKEK 555

Query: 536 XXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFH 595
                  +LA++FGL+      PIR+ KNLR+C DCH   K+ S ++ RE+ +RD +RFH
Sbjct: 556 MLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFH 615

Query: 596 HFKNGTCSCNDFW 608
              +G CSC D+W
Sbjct: 616 QIVDGICSCGDYW 628



 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 197/404 (48%), Gaps = 45/404 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW  +IS Y     S++AL +F +M+  D  P+ FT   V+  C R   +  G
Sbjct: 113 MPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLG 172

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQIHG ++K  +    FV SSL++MYAK G++  AR++F+ + +RDVVS  ++I GYA+ 
Sbjct: 173 KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQL 232

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVSW 172
           G  E A+++F  + S     +  T+ +LL  L+    ++  ++    + ++     +V  
Sbjct: 233 GLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQ 292

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG-L 231
           N++I+ Y K G ++ AR+LF  MP R  ISWN+M+ GY  +G   E +ELF ++  E  +
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRV 352

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P  VT+L+ LS  S   +   G  I   MV       G  GT       K G+      
Sbjct: 353 KPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVA------GEYGT-------KPGT------ 393

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
                      H+  I+  LG  G  D+A E    ++R+  KP A     +L AC     
Sbjct: 394 ----------EHYGCIVDMLGRAGRIDEAFEF---IKRMPSKPTAGVLGSLLGACRVHLS 440

Query: 352 VDEGNKCFDMMINEYKIVP-TVEHYGCLVDILCRAGHLQQAKNI 394
           VD G      +I   +I P    +Y  L ++   AG      N+
Sbjct: 441 VDIGESVGRRLI---EIEPENAGNYVILSNLYASAGRWADVNNV 481


>AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6363172-6366084 FORWARD
           LENGTH=970
          Length = 970

 Score =  392 bits (1006), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/616 (35%), Positives = 343/616 (55%), Gaps = 16/616 (2%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLH--HDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           +VSWN ++  +     ++    + RQML    D+  D  T+   +  C     +   K++
Sbjct: 358 VVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 417

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H Y LK  F +++ V ++ V  YAK G +  A++VF  +  + V SWN+LI G+A++ + 
Sbjct: 418 HCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDP 477

Query: 124 EVA------MKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWN 173
            ++      MK+   +P  D+FT  +LL   +K   +   +EV   + +    +    + 
Sbjct: 478 RLSLDAHLQMKISGLLP--DSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYL 535

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           ++++ Y+  G++   + LF  M  ++L+SWN++I+GY  NG    A+ +F  ++  G+  
Sbjct: 536 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 595

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
             ++++    A S L  L  GR  H++ +KH  + D  +  SLI+MY+K GSI  +  VF
Sbjct: 596 CGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVF 655

Query: 294 KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
             +  K    W A+I+G G+HGLA +A++LF EM+R G  P  +TF+GVL AC+H GL+ 
Sbjct: 656 NGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIH 715

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII-ESMPMRPNKVIWMSLLS 412
           EG +  D M + + + P ++HY C++D+L RAG L +A  ++ E M    +  IW SLLS
Sbjct: 716 EGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775

Query: 413 SSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           S R H NLE+GE  A  L E +P+    Y LLSN+YA  GKW+ V  VR+ M E  + KD
Sbjct: 776 SCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKD 835

Query: 473 AGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXX 532
           AGCS +E   K+  F+VG++     + I +    +  K+   G+ PDT  V         
Sbjct: 836 AGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSV-QHDLSEEE 894

Query: 533 XXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNS 592
                     +LA+++GL+     T IR+ KNLR+C DCH   KL+S +  REI+VRDN 
Sbjct: 895 KIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNK 954

Query: 593 RFHHFKNGTCSCNDFW 608
           RFHHFKNG CSC D+W
Sbjct: 955 RFHHFKNGVCSCGDYW 970



 Score =  168 bits (426), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 181/362 (50%), Gaps = 15/362 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           +    L  WN +IS Y  N   ++ L  F +M+   DLLPD FT PCVIK C+ +  V  
Sbjct: 146 LRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGI 205

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G  +HG V+K G   D FV ++LV+ Y   G +  A ++FD M +R++VSWNS+I  ++ 
Sbjct: 206 GLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSD 265

Query: 120 NGNVEVAMKLFDEMPSR--------DAFTWTALLDGLAKCGKVEAAREVFDQMPK----K 167
           NG  E +  L  EM           D  T   +L   A+  ++   + V     K    K
Sbjct: 266 NGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDK 325

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
             V  NA+++ Y K G I  A+ +F     +N++SWN+M+ G+   G      ++   +L
Sbjct: 326 ELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQML 385

Query: 228 K--EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
              E +    VTIL+A+      + L + + +H + +K  F  + ++  + +  Y+KCGS
Sbjct: 386 AGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGS 445

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           +  A  VF  I +K +  W A+I G         +L+  ++M+  G+ P + T   +L+A
Sbjct: 446 LSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSA 505

Query: 346 CS 347
           CS
Sbjct: 506 CS 507



 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 162/350 (46%), Gaps = 27/350 (7%)

Query: 19  NHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL-KIGFGFDKF 77
           +  S+DA LL R+            L  +++   +   ++ G++IH  V        D  
Sbjct: 73  DESSSDAFLLVRE-----------ALGLLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDV 121

Query: 78  VQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR- 136
           + + ++ MYA  G    +R VFD +  +++  WN++I  Y+RN   +  ++ F EM S  
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181

Query: 137 ----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLA 188
               D FT+  ++   A    V     V   + K   V      NA+++ Y   G +  A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241

Query: 189 RQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE----GLMPSHVTILSALSA 244
            QLF  MP RNL+SWNSMI  +  NG   E+  L   +++E      MP   T+++ L  
Sbjct: 242 LQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPV 301

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHW 304
            +    +G G+ +H + VK   D + VL  +L++MYSKCG I +A  +FK   NK +  W
Sbjct: 302 CAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSW 361

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIG--MKPHAITFIGVLNACSHKGLV 352
             ++ G    G      ++  +M   G  +K   +T +  +  C H+  +
Sbjct: 362 NTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFL 411



 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 165/358 (46%), Gaps = 77/358 (21%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +   T+ SWN +I  +  ++    +L    QM    LLPD FT+  ++  CS+L +++ G
Sbjct: 456 IRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG 515

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K++HG++++     D FV  S++++Y   GE+   + +FD M D+ +VSWN++I GY +N
Sbjct: 516 KEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQN 575

Query: 121 GNVEVAMKLFDEM----------------------PS-----------------RDAFTW 141
           G  + A+ +F +M                      PS                  DAF  
Sbjct: 576 GFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIA 635

Query: 142 TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI 201
            +L+D  AK G +  + +VF+ + +KS+ SWNAMI                         
Sbjct: 636 CSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMI------------------------- 670

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG-RWIHSF 260
                  GY ++G   EA++LFE + + G  P  +T L  L+A +   ++  G R++   
Sbjct: 671 ------MGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQ- 723

Query: 261 MVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANKK--LGHWTAIIVGLGMH 314
            +K  F L   L     +I+M  + G ++ AL V     +++  +G W +++    +H
Sbjct: 724 -MKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIH 780



 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 137/272 (50%), Gaps = 27/272 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M   +LVSWN +I+ Y+ N   + AL +FRQM+ + +   G ++  V   CS L +++ G
Sbjct: 557 MEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG 616

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           ++ H Y LK     D F+  SL++MYAK G +  + KVF+ + ++   SWN++I GY  +
Sbjct: 617 REAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIH 676

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN--- 173
           G  + A+KLF+EM     + D  T+  +L      G +       DQM     +  N   
Sbjct: 677 GLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKH 736

Query: 174 --AMINGYMKSGKINLARQLFGQMPGR--NLISWNSMISGYQLNGRFLE-----AMELFE 224
              +I+   ++G+++ A ++  +      ++  W S++S  +++   LE     A +LFE
Sbjct: 737 YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQN-LEMGEKVAAKLFE 795

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRW 256
           +   E   P +  +LS L A       G G+W
Sbjct: 796 L---EPEKPENYVLLSNLYA-------GLGKW 817



 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 5/152 (3%)

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM- 327
           D VL T +I MY+ CGS + +  VF A+ +K L  W A+I     + L D+ LE F+EM 
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMI 178

Query: 328 RRIGMKPHAITFIGVLNACSHKGLVDEG-NKCFDMMINEYKIVPTVEHYGCLVDILCRAG 386
               + P   T+  V+ AC+  G+ D G       ++ +  +V  V     LV      G
Sbjct: 179 STTDLLPDHFTYPCVIKACA--GMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHG 236

Query: 387 HLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
            +  A  + + MP R N V W S++    ++G
Sbjct: 237 FVTDALQLFDIMPER-NLVSWNSMIRVFSDNG 267


>AT3G15130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:5097153-5099222 REVERSE
           LENGTH=689
          Length = 689

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/625 (34%), Positives = 349/625 (55%), Gaps = 19/625 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW+ ++S +V N     +L LF +M    + P+ FT    +K C  L+A+++G
Sbjct: 67  MPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKG 126

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            QIHG+ LKIGF     V +SLV+MY+K G +  A KVF ++VDR ++SWN++I G+   
Sbjct: 127 LQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHA 186

Query: 121 GNVEVAMKLFDEMPSR------DAFTWTALLDGLAKCGKVEAAREVFDQM-------PKK 167
           G    A+  F  M         D FT T+LL   +  G + A +++   +       P  
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSS 246

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
           ++++  ++++ Y+K G +  AR+ F Q+  + +ISW+S+I GY   G F+EAM LF+ L 
Sbjct: 247 ATIT-GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQ 305

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +         + S +   +  A+L  G+ + +  VK    L+  +  S+++MY KCG ++
Sbjct: 306 ELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVD 365

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            A   F  +  K +  WT +I G G HGL  +++ +F EM R  ++P  + ++ VL+ACS
Sbjct: 366 EAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS 425

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           H G++ EG + F  ++  + I P VEHY C+VD+L RAG L++AK++I++MP++PN  IW
Sbjct: 426 HSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIW 485

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            +LLS  R HG++E+G+     L+  D      Y ++SN+Y  AG W++  + RE+   +
Sbjct: 486 QTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIK 545

Query: 468 GVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLA-GHVPDTSQVL-- 524
           G+ K+AG S VE   +++ F  G+ SHP T  I   L+E  ++L+   G+V      L  
Sbjct: 546 GLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHD 605

Query: 525 -XXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYG 583
                               LA++ G LN + +T IR+ KNLRVC DCH   K LS I  
Sbjct: 606 IDDESKEENLRAHSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITK 664

Query: 584 REIIVRDNSRFHHFKNGTCSCNDFW 608
              +VRD  RFH F++G CSC D+W
Sbjct: 665 IAYVVRDAVRFHSFEDGCCSCGDYW 689



 Score =  159 bits (402), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 232/479 (48%), Gaps = 69/479 (14%)

Query: 44  LPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV 103
           L  +++ C+R     +G Q+H Y+LK G G +    + L++MY K  E  +A KVFD M 
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 104 DRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAARE 159
           +R+VVSW++L+ G+  NG+++ ++ LF EM  +    + FT++  L        +E   +
Sbjct: 69  ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQ 128

Query: 160 V--------FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQ 211
           +        F+ M +      N++++ Y K G+IN A ++F ++  R+LISWN+MI+G+ 
Sbjct: 129 IHGFCLKIGFEMMVEVG----NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFV 184

Query: 212 LNGRFLEAMELFEVLLKEGL--MPSHVTILSALSAVSGLAVLGNGRWIHSFMVK---HCF 266
             G   +A++ F ++ +  +   P   T+ S L A S   ++  G+ IH F+V+   HC 
Sbjct: 185 HAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCP 244

Query: 267 DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFME 326
               + G SL+++Y KCG + SA   F  I  K +  W+++I+G    G   +A+ LF  
Sbjct: 245 SSATITG-SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR 303

Query: 327 MRRIGMKPHAI---TFIGV------------LNACSHK--------------------GL 351
           ++ +  +  +    + IGV            + A + K                    GL
Sbjct: 304 LQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGL 363

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWM 408
           VDE  KCF  M  +  I  TV     ++    + G  +++  I   M    + P++V ++
Sbjct: 364 VDEAEKCFAEMQLKDVISWTV-----VITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 418

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIEA---DPDATGCYTLLSNIYAAAGKWDKVSHVREMM 464
           ++LS+  + G ++ GE     L+E     P     Y  + ++   AG+  +  H+ + M
Sbjct: 419 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEH-YACVVDLLGRAGRLKEAKHLIDTM 476


>AT4G35130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:16721084-16723498 REVERSE
           LENGTH=804
          Length = 804

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/621 (35%), Positives = 341/621 (54%), Gaps = 20/621 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN +IS Y+       +L+LF++ML     PD F+    +  CS +++ + G
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMG 250

Query: 61  KQIHGYVLK--IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           K+IH + ++  I  G D  V +S+++MY+K+GE+  A ++F+ M+ R++V+WN +I  YA
Sbjct: 251 KEIHCHAVRSRIETG-DVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYA 309

Query: 119 RNGNVEVAMKLFDEMPSRDAFT-----------WTALLDGLAKCGKVEAAREVFDQMPKK 167
           RNG V  A   F +M  ++               +A+L+G    G   A R  F  +P  
Sbjct: 310 RNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGY--AMRRGF--LPHM 365

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
             V   A+I+ Y + G++  A  +F +M  +N+ISWNS+I+ Y  NG+   A+ELF+ L 
Sbjct: 366 --VLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELW 423

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
              L+P   TI S L A +    L  GR IH+++VK  +  + ++  SL+ MY+ CG +E
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            A   F  I  K +  W +II+   +HG    ++ LF EM    + P+  TF  +L ACS
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
             G+VDEG + F+ M  EY I P +EHYGC++D++ R G+   AK  +E MP  P   IW
Sbjct: 544 ISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIW 603

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            SLL++SRNH ++ I E+AA  + + + D TGCY LL N+YA AG+W+ V+ ++ +M+ +
Sbjct: 604 GSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESK 663

Query: 468 GVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXX 527
           G+ + +  S VE +GK + F  GD+SH  T  IY  L  +S+ +            L   
Sbjct: 664 GISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRPE 723

Query: 528 XXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREII 587
                          RLA  FGL++ E    + +  N R+C  CH   +  S +  REI+
Sbjct: 724 TLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREIV 783

Query: 588 VRDNSRFHHFKNGTCSCNDFW 608
           V D+  FHHF NG CSC ++W
Sbjct: 784 VGDSKIFHHFSNGRCSCGNYW 804



 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/494 (28%), Positives = 246/494 (49%), Gaps = 23/494 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M+K     WN++I  +       +A+  + +M+   +  D FT P VIK  + + +++EG
Sbjct: 90  MNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEG 149

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IH  V+K+GF  D +V +SL+++Y K G    A KVF++M +RD+VSWNS+I GY   
Sbjct: 150 KKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLAL 209

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLA-----KCGKVEAAREVFDQMPKKSSVS 171
           G+   ++ LF EM       D F+  + L   +     K GK      V  ++     + 
Sbjct: 210 GDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMV 269

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE-G 230
             ++++ Y K G+++ A ++F  M  RN+++WN MI  Y  NGR  +A   F+ + ++ G
Sbjct: 270 MTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNG 329

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           L P  +T ++ L A + L     GR IH + ++  F    VL T+LI+MY +CG ++SA 
Sbjct: 330 LQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAE 385

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F  +A K +  W +II     +G    ALELF E+    + P + T   +L A +   
Sbjct: 386 VIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESL 445

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            + EG +    ++       T+     LV +    G L+ A+     + ++ + V W S+
Sbjct: 446 SLSEGREIHAYIVKSRYWSNTI-ILNSLVHMYAMCGDLEDARKCFNHILLK-DVVSWNSI 503

Query: 411 LSSSRNHGNLEIGEYAAHNLIEA--DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
           + +   HG   I  +    +I +  +P+ +   +LL+    +    +   +   M +E G
Sbjct: 504 IMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYG 563

Query: 469 VLKDAGCSIVEHRG 482
           +  D G   +EH G
Sbjct: 564 I--DPG---IEHYG 572



 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 178/365 (48%), Gaps = 24/365 (6%)

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAK 150
           A ++FD+M   D   WN +I G+   G    A++ +  M       D FT+  ++  +A 
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 151 CGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSM 206
              +E  +++   + K   VS     N++I+ YMK G    A ++F +MP R+++SWNSM
Sbjct: 143 ISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSM 202

Query: 207 ISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF 266
           ISGY   G    ++ LF+ +LK G  P   + +SAL A S +     G+ IH   V+   
Sbjct: 203 ISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRI 262

Query: 267 DL-DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFM 325
           +  D ++ TS+++MYSK G +  A  +F  +  + +  W  +I     +G    A   F 
Sbjct: 263 ETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQ 322

Query: 326 EM-RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
           +M  + G++P  IT I +L A +    + EG       +     +P +     L+D+   
Sbjct: 323 KMSEQNGLQPDVITSINLLPASA----ILEGRTIHGYAMRR-GFLPHMVLETALIDMYGE 377

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSS----SRNHGNLEI-GEYAAHNLIEADPDATG 439
            G L+ A+ I + M  + N + W S++++     +N+  LE+  E    +L+   PD+T 
Sbjct: 378 CGQLKSAEVIFDRMAEK-NVISWNSIIAAYVQNGKNYSALELFQELWDSSLV---PDSTT 433

Query: 440 CYTLL 444
             ++L
Sbjct: 434 IASIL 438



 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 120/270 (44%), Gaps = 15/270 (5%)

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           + G+  S  +  A QLF +M   +   WN MI G+   G ++EA++ +  ++  G+    
Sbjct: 71  LRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADT 130

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T    + +V+G++ L  G+ IH+ ++K  F  D  +  SLI +Y K G    A  VF+ 
Sbjct: 131 FTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEE 190

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           +  + +  W ++I G    G    +L LF EM + G KP   + +  L ACSH      G
Sbjct: 191 MPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMG 250

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
            +     +        V     ++D+  + G +  A+ I   M  R N V W        
Sbjct: 251 KEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQR-NIVAW-------- 301

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLS 445
              N+ IG YA +  +    DA  C+  +S
Sbjct: 302 ---NVMIGCYARNGRV---TDAFLCFQKMS 325


>AT1G74630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28030521-28032452 FORWARD
           LENGTH=643
          Length = 643

 Score =  390 bits (1003), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 333/609 (54%), Gaps = 35/609 (5%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGK 61
           +P    +N ++  Y  +   ++++ +F +M+    + PD F+   VIK      +++ G 
Sbjct: 67  EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           Q+H   LK G     FV ++L+ MY   G                               
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCG------------------------------- 155

Query: 122 NVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMK 181
            VE A K+FDEM   +   W A++    +   V  ARE+FD+M  ++  SWN M+ GY+K
Sbjct: 156 CVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIK 215

Query: 182 SGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSA 241
           +G++  A+++F +MP R+ +SW++MI G   NG F E+   F  L + G+ P+ V++   
Sbjct: 216 AGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGV 275

Query: 242 LSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK- 300
           LSA S       G+ +H F+ K  +     +  +LI+MYS+CG++  A  VF+ +  K+ 
Sbjct: 276 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 335

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
           +  WT++I GL MHG  ++A+ LF EM   G+ P  I+FI +L+ACSH GL++EG   F 
Sbjct: 336 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFS 395

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
            M   Y I P +EHYGC+VD+  R+G LQ+A + I  MP+ P  ++W +LL +  +HGN+
Sbjct: 396 EMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNI 455

Query: 421 EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEH 480
           E+ E     L E DP+ +G   LLSN YA AGKW  V+ +R+ M  + + K    S+VE 
Sbjct: 456 ELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEV 515

Query: 481 RGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK-LAGHVPDTSQVLXXXXXXXXXXXXXXX 539
              + +F  G+K        + KL+E+  +LK  AG+ P+ +  L               
Sbjct: 516 GKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASAL-YDVEEEEKEDQVSK 574

Query: 540 XXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKN 599
              +LA++F L  + +   IRI+KNLR+C DCHAV KL S +YG EI+VRD +RFH FK+
Sbjct: 575 HSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKD 634

Query: 600 GTCSCNDFW 608
           G+CSC D+W
Sbjct: 635 GSCSCRDYW 643



 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 145/329 (44%), Gaps = 79/329 (24%)

Query: 1   MHKPTLVSWNLIIS-CY----------------VHNHRS--------------------- 22
           MH+P LV+WN +I+ C+                V NH S                     
Sbjct: 167 MHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIF 226

Query: 23  ------------------------NDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQ 58
                                   N++ L FR++    + P+  +L  V+  CS+  + +
Sbjct: 227 SEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFE 286

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD-RDVVSWNSLIDGY 117
            GK +HG+V K G+ +   V ++L++MY++ G + +AR VF+ M + R +VSW S+I G 
Sbjct: 287 FGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGL 346

Query: 118 ARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-- 171
           A +G  E A++LF+EM     + D  ++ +LL   +  G +E   + F +M +   +   
Sbjct: 347 AMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPE 406

Query: 172 ---WNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
              +  M++ Y +SGK+  A     QMP     I W +++     +G  +E  E  +  L
Sbjct: 407 IEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGN-IELAEQVKQRL 465

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRW 256
            E L P++   L  LS     A    G+W
Sbjct: 466 NE-LDPNNSGDLVLLSNAYATA----GKW 489


>AT5G13270.1 | Symbols: RARE1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4246954-4249212 REVERSE
           LENGTH=752
          Length = 752

 Score =  390 bits (1001), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 341/623 (54%), Gaps = 29/623 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   VS   +IS Y      + A+ LF  ML     P       ++K      A+  G
Sbjct: 144 MSELNAVSRTTMISAYAEQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFG 203

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QIH +V++ G   +  +++ +VNMY K G +  A++VFD+M  +  V+   L+ GY + 
Sbjct: 204 RQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQA 263

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK---KSSVS-W 172
           G    A+KLF ++ +     D+F ++ +L   A   ++   +++   + K   +S VS  
Sbjct: 264 GRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVG 323

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL-KEGL 231
             +++ Y+K      A + F ++   N +SW+++ISGY    +F EA++ F+ L  K   
Sbjct: 324 TPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAS 383

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           + +  T  S   A S LA    G  +H+  +K          ++LI MYSKCG ++ A  
Sbjct: 384 ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANE 443

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF+++ N  +  WTA I G   +G A +AL LF +M   GMKP+++TFI VL ACSH GL
Sbjct: 444 VFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGL 503

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           V++G  C D M+ +Y + PT++HY C++DI  R+G L +A   +++MP  P+ + W   L
Sbjct: 504 VEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMPFEPDAMSWKCFL 563

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           S    H NLE+GE A   L + DP+ T  Y L  N+Y  AGKW++ + + ++M ER + K
Sbjct: 564 SGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKK 623

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLRE----MSKKLKLAGHVPDTSQVLXXX 527
           +  CS ++ +GK++RFIVGDK HPQT+ IY KL+E    M   +          Q+L   
Sbjct: 624 ELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEFDGFMEGDMFQCNMTERREQLL--- 680

Query: 528 XXXXXXXXXXXXXXXRLAISFGLLNM--ERRTPIRIMKNLRVCNDCHAVTKLLSAIYGRE 585
                          RLAI+FGL+++      PI++ KNLR C DCH   K +S + G E
Sbjct: 681 -----------DHSERLAIAFGLISVHGNAPAPIKVFKNLRACPDCHEFAKHVSLVTGHE 729

Query: 586 IIVRDNSRFHHFKNGTCSCNDFW 608
           I++RD+ RFHHFK G CSCND+W
Sbjct: 730 IVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 190/416 (45%), Gaps = 24/416 (5%)

Query: 20  HRS-NDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDK-- 76
           HR  N+A    ++M    +    ++  C+ + C  L ++  G+ +H    ++  G +   
Sbjct: 61  HRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSHGRLLHD---RMRMGIENPS 117

Query: 77  -FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLF----- 130
             +Q+ ++ MY +   +  A K+FD+M + + VS  ++I  YA  G ++ A+ LF     
Sbjct: 118 VLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDKAVGLFSGMLA 177

Query: 131 --DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGK 184
             D+ PS     +T LL  L     ++  R++   + +    S       ++N Y+K G 
Sbjct: 178 SGDKPPSS---MYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGW 234

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA 244
           +  A+++F QM  +  ++   ++ GY   GR  +A++LF  L+ EG+          L A
Sbjct: 235 LVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKA 294

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHW 304
            + L  L  G+ IH+ + K   + +  +GT L++ Y KC S ESA   F+ I       W
Sbjct: 295 CASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSW 354

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKP-HAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           +AII G       ++A++ F  +R       ++ T+  +  ACS     + G +     I
Sbjct: 355 SAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAI 414

Query: 364 NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
               ++ +      L+ +  + G L  A  + ESM   P+ V W + +S    +GN
Sbjct: 415 KR-SLIGSQYGESALITMYSKCGCLDDANEVFESMD-NPDIVAWTAFISGHAYYGN 468


>AT2G41080.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:17132857-17134554 FORWARD
           LENGTH=565
          Length = 565

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/566 (36%), Positives = 325/566 (57%), Gaps = 41/566 (7%)

Query: 83  VNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWT 142
           ++MY+K G+   A  V+ +M  ++ +S N LI+GY R G++  A K+FDEMP R   TW 
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 143 ALLDGLAKCGKVEAAREVFDQM------PKK-------------SSVSWNAMINGY---- 179
           A++ GL +    E    +F +M      P +              SVS    I+GY    
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKY 120

Query: 180 ----------------MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF 223
                           M++GK+     +   MP RNL++WN++I G   NG     + L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
           +++   G  P+ +T ++ LS+ S LA+ G G+ IH+  +K        + +SLI MYSKC
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240

Query: 284 GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGV 342
           G +  A   F    ++    W+++I   G HG  D+A+ELF  M  +  M+ + + F+ +
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNL 300

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
           L ACSH GL D+G + FDMM+ +Y   P ++HY C+VD+L RAG L QA+ II SMP++ 
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKT 360

Query: 403 NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVRE 462
           + VIW +LLS+   H N E+ +     +++ DP+ + CY LL+N++A+A +W  VS VR+
Sbjct: 361 DIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRK 420

Query: 463 MMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQ 522
            M+++ V K+AG S  EH+G++++F +GD+S  ++K IY+ L+E++ ++KL G+ PDT+ 
Sbjct: 421 SMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTAS 480

Query: 523 VLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIY 582
           VL                  +LA++F L+ +    PIRI+KNLRVC+DCH   K +S I 
Sbjct: 481 VL-HDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIK 539

Query: 583 GREIIVRDNSRFHHFKNGTCSCNDFW 608
            REI +RD SRFHHF NG CSC D+W
Sbjct: 540 NREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 164/341 (48%), Gaps = 11/341 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    L +WN +I+  +    + + L LFR+M      PD +TL  V  G + L +V  G
Sbjct: 51  MPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIG 110

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QIHGY +K G   D  V SSL +MY + G++     V   M  R++V+WN+LI G A+N
Sbjct: 111 QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 170

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSW 172
           G  E  + L+  M       +  T+  +L   +        +++  +  K          
Sbjct: 171 GCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVV 230

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +++I+ Y K G +  A + F +    + + W+SMIS Y  +G+  EA+ELF  + ++  M
Sbjct: 231 SSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNM 290

Query: 233 P-SHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             + V  L+ L A S   +   G  +   MV K+ F       T ++++  + G ++ A 
Sbjct: 291 EINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAE 350

Query: 291 AVFKAIANK-KLGHWTAIIVGLGMHGLADQALELFMEMRRI 330
           A+ +++  K  +  W  ++    +H  A+ A  +F E+ +I
Sbjct: 351 AIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQI 391


>AT2G22410.1 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080
           FORWARD LENGTH=681
          Length = 681

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/554 (37%), Positives = 306/554 (55%), Gaps = 42/554 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH---DLLPDGFTLPCVIKGCSRLHAV 57
           +  P + SWN+ I  +  +    ++ LL++QML H   +  PD FT P + K C+ L   
Sbjct: 113 IENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLS 172

Query: 58  QEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
             G  I G+VLK+       V ++ ++M+A  G+M  ARKVFD+   RD+VSWN LI+GY
Sbjct: 173 SLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGY 232

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTW-------------------------------- 141
            + G  E A+ ++  M S     D  T                                 
Sbjct: 233 KKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTI 292

Query: 142 ---TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGR 198
               AL+D  +KCG +  AR +FD + K++ VSW  MI+GY + G ++++R+LF  M  +
Sbjct: 293 PLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEK 352

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           +++ WN+MI G     R  +A+ LF+ +      P  +T++  LSA S L  L  G WIH
Sbjct: 353 DVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIH 412

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
            ++ K+   L+  LGTSL++MY+KCG+I  AL+VF  I  +    +TAII GL +HG A 
Sbjct: 413 RYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAS 472

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL 378
            A+  F EM   G+ P  ITFIG+L+AC H G++  G   F  M + + + P ++HY  +
Sbjct: 473 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 532

Query: 379 VDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDAT 438
           VD+L RAG L++A  ++ESMPM  +  +W +LL   R HGN+E+GE AA  L+E DP  +
Sbjct: 533 VDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 592

Query: 439 GCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTK 498
           G Y LL  +Y  A  W+     R MM ERGV K  GCS +E  G +  FIV DKS P+++
Sbjct: 593 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESE 652

Query: 499 AIYAKLREMSKKLK 512
            IY +L  + + ++
Sbjct: 653 KIYDRLHCLGRHMR 666



 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 191/431 (44%), Gaps = 48/431 (11%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYA--KWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           KQI   ++  G   D F  S L+   A  +   +  + K+   + + ++ SWN  I G++
Sbjct: 70  KQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFS 129

Query: 119 RNGNVEVAMKLFDEM------PSR-DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS--- 168
            + N + +  L+ +M       SR D FT+  L    A          +   + K     
Sbjct: 130 ESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLEL 189

Query: 169 -SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
            S   NA I+ +   G +  AR++F + P R+L+SWN +I+GY+  G   +A+ +++++ 
Sbjct: 190 VSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLME 249

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
            EG+ P  VT++  +S+ S L  L  G+  + ++ ++   +   L  +L++M+SKCG I 
Sbjct: 250 SEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIH 309

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLAD----------------------------- 318
            A  +F  +  + +  WT +I G    GL D                             
Sbjct: 310 EARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKR 369

Query: 319 --QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
              AL LF EM+    KP  IT I  L+ACS  G +D G       I +Y +   V    
Sbjct: 370 GQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVG-IWIHRYIEKYSLSLNVALGT 428

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD-- 434
            LVD+  + G++ +A ++   +  R N + + +++     HG+        + +I+A   
Sbjct: 429 SLVDMYAKCGNISEALSVFHGIQTR-NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIA 487

Query: 435 PDATGCYTLLS 445
           PD      LLS
Sbjct: 488 PDEITFIGLLS 498


>AT2G44880.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:18505239-18506906 FORWARD
           LENGTH=555
          Length = 555

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/501 (39%), Positives = 296/501 (59%), Gaps = 5/501 (0%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           N +I  Y+   +  D+  L+R +       PD FT   + K CS    V +G Q+H  + 
Sbjct: 46  NSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLTKSCSLSMCVYQGLQLHSQIW 105

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
           + GF  D +V + +V+MYAK+G+MG AR  FD+M  R  VSW +LI GY R G +++A K
Sbjct: 106 RFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYIRCGELDLASK 165

Query: 129 LFDEMPS-RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINL 187
           LFD+MP  +D   + A++DG  K G + +AR +FD+M  K+ ++W  MI+GY     I+ 
Sbjct: 166 LFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDA 225

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVS 246
           AR+LF  MP RNL+SWN+MI GY  N +  E + LF E+     L P  VTILS L A+S
Sbjct: 226 ARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAIS 285

Query: 247 GLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTA 306
               L  G W H F+ +   D    + T++++MYSKCG IE A  +F  +  K++  W A
Sbjct: 286 DTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNA 345

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           +I G  ++G A  AL+LF+ M  I  KP  IT + V+ AC+H GLV+EG K F +M  E 
Sbjct: 346 MIHGYALNGNARAALDLFVTMM-IEEKPDEITMLAVITACNHGGLVEEGRKWFHVM-REM 403

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYA 426
            +   +EHYGC+VD+L RAG L++A+++I +MP  PN +I  S LS+   + ++E  E  
Sbjct: 404 GLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNGIILSSFLSACGQYKDIERAERI 463

Query: 427 AHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNR 486
               +E +P   G Y LL N+YAA  +WD    V+ +M++    K+ GCS++E    ++ 
Sbjct: 464 LKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSE 523

Query: 487 FIVGDKSHPQTKAIYAKLREM 507
           FI GD +HP  ++I+  L ++
Sbjct: 524 FISGDTTHPHRRSIHLVLGDL 544



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 171/402 (42%), Gaps = 88/402 (21%)

Query: 92  MGLARKVFDKMVDR-DVVSWNSLIDGYARNGNVEVAMKLFDEMPSR-----DAFTWTAL- 144
           +G ARK+FD+   R D    NS+I  Y        +  L+ ++        D FT+T L 
Sbjct: 26  IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85

Query: 145 ----------------------------------LDGLAKCGKVEAAREVFDQMPKKSSV 170
                                             +D  AK GK+  AR  FD+MP +S V
Sbjct: 86  KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEV 145

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPG-RNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           SW A+I+GY++ G+++LA +LF QMP  ++++ +N+M+ G+  +G    A  LF+ +   
Sbjct: 146 SWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEM--- 202

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
               +H T+++               W                 T++I  Y     I++A
Sbjct: 203 ----THKTVIT---------------W-----------------TTMIHGYCNIKDIDAA 226

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR-RIGMKPHAITFIGVLNACSH 348
             +F A+  + L  W  +I G   +    + + LF EM+    + P  +T + VL A S 
Sbjct: 227 RKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISD 286

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
            G +  G  C    +   K+   V+    ++D+  + G +++AK I + MP +     W 
Sbjct: 287 TGALSLGEWCH-CFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEK-QVASWN 344

Query: 409 SLLSSSRNHGNLEIG-EYAAHNLIEADPDATGCYTLLSNIYA 449
           +++     +GN     +     +IE  PD     T+L+ I A
Sbjct: 345 AMIHGYALNGNARAALDLFVTMMIEEKPDEI---TMLAVITA 383



 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 105/206 (50%), Gaps = 12/206 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQM-LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  LVSWN +I  Y  N +  + + LF++M     L PD  T+  V+   S   A+  
Sbjct: 233 MPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSL 292

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+  H +V +        V +++++MY+K GE+  A+++FD+M ++ V SWN++I GYA 
Sbjct: 293 GEWCHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYAL 352

Query: 120 NGNVEVAMKLF-----DEMPSRDAFTWTALLDGLAKCGKVEAARE---VFDQMPKKSSVS 171
           NGN   A+ LF     +E P  D  T  A++      G VE  R+   V  +M   + + 
Sbjct: 353 NGNARAALDLFVTMMIEEKP--DEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIE 410

Query: 172 -WNAMINGYMKSGKINLARQLFGQMP 196
            +  M++   ++G +  A  L   MP
Sbjct: 411 HYGCMVDLLGRAGSLKEAEDLITNMP 436


>AT2G13600.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:5671493-5673586 FORWARD
           LENGTH=697
          Length = 697

 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/543 (37%), Positives = 310/543 (57%), Gaps = 46/543 (8%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           +WN ++S +  + R  +AL  F  M     + + ++   V+  CS L+ + +G Q+H  +
Sbjct: 119 TWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLI 178

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
            K  F  D ++ S+LV+MY+K G +  A++VFD+M DR+VVSWNSLI  + +NG    A+
Sbjct: 179 AKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEAL 238

Query: 128 KLFDEM-PSR---------------------------------------DAFTWTALLDG 147
            +F  M  SR                                       D     A +D 
Sbjct: 239 DVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDM 298

Query: 148 LAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMI 207
            AKC +++ AR +FD MP ++ ++  +MI+GY  +     AR +F +M  RN++SWN++I
Sbjct: 299 YAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALI 358

Query: 208 SGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD 267
           +GY  NG   EA+ LF +L +E + P+H +  + L A + LA L  G   H  ++KH F 
Sbjct: 359 AGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFK 418

Query: 268 L------DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
                  D  +G SLI+MY KCG +E    VF+ +  +    W A+I+G   +G  ++AL
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 322 ELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDI 381
           ELF EM   G KP  IT IGVL+AC H G V+EG   F  M  ++ + P  +HY C+VD+
Sbjct: 479 ELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 382 LCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCY 441
           L RAG L++AK++IE MPM+P+ VIW SLL++ + H N+ +G+Y A  L+E +P  +G Y
Sbjct: 539 LGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPY 598

Query: 442 TLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIY 501
            LLSN+YA  GKW+ V +VR+ M++ GV K  GCS ++ +G  + F+V DKSHP+ K I+
Sbjct: 599 VLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIH 658

Query: 502 AKL 504
           + L
Sbjct: 659 SLL 661



 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 171/314 (54%), Gaps = 7/314 (2%)

Query: 99  FDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAR 158
           F K++D  + S  S I  Y R  +  V    F    S + F    L+D  +KCG +E  R
Sbjct: 22  FAKLLDSCIKSKLSAI--YVRYVHASVIKSGF----SNEIFIQNRLIDAYSKCGSLEDGR 75

Query: 159 EVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLE 218
           +VFD+MP+++  +WN+++ G  K G ++ A  LF  MP R+  +WNSM+SG+  + R  E
Sbjct: 76  QVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135

Query: 219 AMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIE 278
           A+  F ++ KEG + +  +  S LSA SGL  +  G  +HS + K  F  D  +G++L++
Sbjct: 136 ALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVD 195

Query: 279 MYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
           MYSKCG++  A  VF  + ++ +  W ++I     +G A +AL++F  M    ++P  +T
Sbjct: 196 MYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVT 255

Query: 339 FIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
              V++AC+    +  G +    ++   K+   +      VD+  +   +++A+ I +SM
Sbjct: 256 LASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSM 315

Query: 399 PMRPNKVIWMSLLS 412
           P+R N +   S++S
Sbjct: 316 PIR-NVIAETSMIS 328



 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 176/358 (49%), Gaps = 71/358 (19%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H  V+K GF  + F+Q+ L++ Y+K G +   R+VFDKM  R++ +WNS++ G  + 
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV---------- 170
           G ++ A  LF  MP RD  TW +++ G A+  + E A   F  M K+  V          
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 171 -----------------------------SWNAMINGYMKSGKINLARQLFGQMPGRNLI 201
                                          +A+++ Y K G +N A+++F +M  RN++
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           SWNS+I+ ++ NG  +EA+++F+++L+  + P  VT+ S +SA + L+ +  G+ +H  +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 262 VKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKA------------------------- 295
           VK+     D +L  + ++MY+KC  I+ A  +F +                         
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAA 339

Query: 296 ------IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
                 +A + +  W A+I G   +G  ++AL LF  ++R  + P   +F  +L AC+
Sbjct: 340 RLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACA 397



 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 176/392 (44%), Gaps = 79/392 (20%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +VSWN +I+C+  N  + +AL +F+ ML   + PD  TL  VI  C+ L A++ G
Sbjct: 213 MGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVG 272

Query: 61  KQIHGYVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           +++HG V+K      D  + ++ V+MYAK   +  AR +FD M  R+V++  S+I GYA 
Sbjct: 273 QEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAM 332

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW------- 172
             + + A  +F +M  R+  +W AL+ G  + G+ E A  +F  + ++S           
Sbjct: 333 AASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANI 392

Query: 173 --------------------------------------NAMINGYMKSGKINLARQLFGQ 194
                                                 N++I+ Y+K G +     +F +
Sbjct: 393 LKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRK 452

Query: 195 MPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
           M  R+ +SWN+MI G+  NG   EA+ELF  +L+ G  P H+T++  LSA      +  G
Sbjct: 453 MMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEG 512

Query: 255 RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMH 314
           R   S M +         G + +                         H+T ++  LG  
Sbjct: 513 RHYFSSMTRD-------FGVAPLR-----------------------DHYTCMVDLLGRA 542

Query: 315 GLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           G  ++A  +  EM    M+P ++ +  +L AC
Sbjct: 543 GFLEEAKSMIEEM---PMQPDSVIWGSLLAAC 571



 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 128/246 (52%), Gaps = 22/246 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN +I+ Y  N  + +AL LF  +    + P  ++   ++K C+ L  +  G
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405

Query: 61  KQIHGYVLKIGFGF------DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLI 114
            Q H +VLK GF F      D FV +SL++MY K G +     VF KM++RD VSWN++I
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465

Query: 115 DGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV 170
            G+A+NG    A++LF EM       D  T   +L      G VE  R  F  M +   V
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525

Query: 171 S-----WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLN-----GRFLEA 219
           +     +  M++   ++G +  A+ +  +MP + + + W S+++  +++     G+++ A
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYV-A 584

Query: 220 MELFEV 225
            +L EV
Sbjct: 585 EKLLEV 590


>AT2G03880.1 | Symbols: REME1 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1181560-1183452 FORWARD
           LENGTH=630
          Length = 630

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 332/588 (56%), Gaps = 26/588 (4%)

Query: 35  HDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGL 94
           H L  D  T   +IK C    AV EG  I  ++   G     F+ + L+NMY K+  +  
Sbjct: 55  HGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLND 114

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYAR----NGNVEVAMKLFDEMPSRDAFTWTALL---DG 147
           A ++FD+M  R+V+SW ++I  Y++       +E+ + +  +    + +T++++L   +G
Sbjct: 115 AHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNG 174

Query: 148 LAK-----CGKVEAARE--VFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
           ++      CG ++   E  VF +         +A+I+ + K G+   A  +F +M   + 
Sbjct: 175 MSDVRMLHCGIIKEGLESDVFVR---------SALIDVFAKLGEPEDALSVFDEMVTGDA 225

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           I WNS+I G+  N R   A+ELF+ + + G +    T+ S L A +GLA+L  G   H  
Sbjct: 226 IVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVH 285

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
           +VK  +D D +L  +L++MY KCGS+E AL VF  +  + +  W+ +I GL  +G + +A
Sbjct: 286 IVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEA 343

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVD 380
           L+LF  M+  G KP+ IT +GVL ACSH GL+++G   F  M   Y I P  EHYGC++D
Sbjct: 344 LKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMID 403

Query: 381 ILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGC 440
           +L +AG L  A  ++  M   P+ V W +LL + R   N+ + EYAA  +I  DP+  G 
Sbjct: 404 LLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGT 463

Query: 441 YTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAI 500
           YTLLSNIYA + KWD V  +R  M++RG+ K+ GCS +E   +++ FI+GD SHPQ   +
Sbjct: 464 YTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEV 523

Query: 501 YAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIR 560
             KL ++  +L   G+VP+T+ VL                  +LA++FGL+ +     IR
Sbjct: 524 SKKLNQLIHRLTGIGYVPETNFVL-QDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIR 582

Query: 561 IMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           I KNLR+C DCH   KL S +  R I++RD  R+HHF++G CSC D+W
Sbjct: 583 IRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 175/353 (49%), Gaps = 44/353 (12%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SW  +IS Y        AL L   ML  ++ P+ +T   V++ C+ +  V   
Sbjct: 122 MPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV--- 178

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H  ++K G   D FV+S+L++++AK GE   A  VFD+MV  D + WNS+I G+A+N
Sbjct: 179 RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQN 238

Query: 121 GNVEVAMKLFDEMPSRDAF-----TWTALLDGLAKCGKVEAAREVFDQMPK--KSSVSWN 173
              +VA++LF  M  R  F     T T++L        +E   +    + K  +  +  N
Sbjct: 239 SRSDVALELFKRM-KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNN 297

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           A+++ Y K G +  A ++F QM  R++I+W++MISG   NG   EA++LFE +   G  P
Sbjct: 298 ALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKP 357

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
           +++TI+  L A S   +L +G W +   +K  + +D V                      
Sbjct: 358 NYITIVGVLFACSHAGLLEDG-WYYFRSMKKLYGIDPV---------------------- 394

Query: 294 KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
                    H+  +I  LG  G  D A++L  EM     +P A+T+  +L AC
Sbjct: 395 -------REHYGCMIDLLGKAGKLDDAVKLLNEME---CEPDAVTWRTLLGAC 437


>AT4G14050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8103645-8105483 REVERSE
           LENGTH=612
          Length = 612

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 339/604 (56%), Gaps = 50/604 (8%)

Query: 51  CSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSW 110
           C+R   +   K +H +++K+G      + ++LVN+Y K G    A +VFD+M  RD ++W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 111 NS------------------------------------LIDGYARNGNV----EVAMKLF 130
            S                                    L+   A  G++    +V     
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132

Query: 131 DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQ 190
               + D    ++L+D  AKCG + +A+ VFD +  K+++SW AM++GY KSG+   A +
Sbjct: 133 VSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALE 192

Query: 191 LFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL-SAVSGLA 249
           LF  +P +NL SW ++ISG+  +G+ LEA  +F  + +E +      +LS++  A + LA
Sbjct: 193 LFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLA 252

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIV 309
               GR +H  ++   FD    +  +LI+MY+KC  + +A  +F  + ++ +  WT++IV
Sbjct: 253 ASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIV 312

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIV 369
           G+  HG A++AL L+ +M   G+KP+ +TF+G++ ACSH G V++G + F  M  +Y I 
Sbjct: 313 GMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIR 372

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHN 429
           P+++HY CL+D+L R+G L +A+N+I +MP  P++  W +LLS+ +  G  ++G   A +
Sbjct: 373 PSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADH 432

Query: 430 LIEA----DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLN 485
           L+ +    DP     Y LLSNIYA+A  W KVS  R  + E  V KD G S VE R +  
Sbjct: 433 LVSSFKLKDPST---YILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETE 489

Query: 486 RFIVGDKSHPQTKAIYAKLREMSKKLKLA-GHVPDTSQVLXXXXXXXXXXXXXXXXXXRL 544
            F  G+ SHP  + I+  L+++ +++++  G+VPDTS +L                  R 
Sbjct: 490 VFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWIL-HDMDEQEKEKLLFWHSERS 548

Query: 545 AISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSC 604
           A+++GLL     TPIRI+KNLRVC DCH V K +S I  REIIVRD +R+HHFK G CSC
Sbjct: 549 AVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSC 608

Query: 605 NDFW 608
           NDFW
Sbjct: 609 NDFW 612



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 134/286 (46%), Gaps = 44/286 (15%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDL----------------------------- 37
           +SW  ++S Y  + R  +AL LFR +   +L                             
Sbjct: 172 ISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231

Query: 38  ---LPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGL 94
              + D   L  ++  C+ L A   G+Q+HG V+ +GF    F+ ++L++MYAK  ++  
Sbjct: 232 RVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIA 291

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAK 150
           A+ +F +M  RDVVSW SLI G A++G  E A+ L+D+M S     +  T+  L+   + 
Sbjct: 292 AKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSH 351

Query: 151 CGKVEAAREVFDQMPKKSSVS-----WNAMINGYMKSGKINLARQLFGQMP-GRNLISWN 204
            G VE  RE+F  M K   +      +  +++   +SG ++ A  L   MP   +  +W 
Sbjct: 352 VGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWA 411

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLM--PSHVTILSALSAVSGL 248
           +++S  +  GR    + + + L+    +  PS   +LS + A + L
Sbjct: 412 ALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASL 457


>AT3G46790.1 | Symbols: CRR2 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17231975-17233948 REVERSE
           LENGTH=657
          Length = 657

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 331/592 (55%), Gaps = 15/592 (2%)

Query: 31  QMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWG 90
           ++L  +  P   T   +I  C    ++ +  ++H ++L  G   D F+ + L+ MY+  G
Sbjct: 67  RVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLG 126

Query: 91  EMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLD 146
            +  ARKVFDK   R +  WN+L       G+ E  + L+ +M       D FT+T +L 
Sbjct: 127 SVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLK 186

Query: 147 GL--AKC--GKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGR 198
               ++C    +   +E+   + ++   S       +++ Y + G ++ A  +FG MP R
Sbjct: 187 ACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVR 246

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKE--GLMPSHVTILSALSAVSGLAVLGNGRW 256
           N++SW++MI+ Y  NG+  EA+  F  +++E     P+ VT++S L A + LA L  G+ 
Sbjct: 247 NVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKL 306

Query: 257 IHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
           IH ++++   D    + ++L+ MY +CG +E    VF  + ++ +  W ++I   G+HG 
Sbjct: 307 IHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGY 366

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
             +A+++F EM   G  P  +TF+ VL ACSH+GLV+EG + F+ M  ++ I P +EHY 
Sbjct: 367 GKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYA 426

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
           C+VD+L RA  L +A  +++ M   P   +W SLL S R HGN+E+ E A+  L   +P 
Sbjct: 427 CMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPK 486

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQ 496
             G Y LL++IYA A  WD+V  V+++++ RG+ K  G   +E R K+  F+  D+ +P 
Sbjct: 487 NAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPL 546

Query: 497 TKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERR 556
            + I+A L ++++ +K  G++P T  VL                  +LA++FGL+N  + 
Sbjct: 547 MEQIHAFLVKLAEDMKEKGYIPQTKGVL-YELETEEKERIVLGHSEKLALAFGLINTSKG 605

Query: 557 TPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            PIRI KNLR+C DCH  TK +S    +EI+VRD +RFH FKNG CSC D+W
Sbjct: 606 EPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 129/223 (57%), Gaps = 16/223 (7%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHH--DLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           +VSW+ +I+CY  N ++ +AL  FR+M+    D  P+  T+  V++ C+ L A+++GK I
Sbjct: 248 VVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLI 307

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           HGY+L+ G      V S+LV MY + G++ + ++VFD+M DRDVVSWNSLI  Y  +G  
Sbjct: 308 HGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYG 367

Query: 124 EVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNA 174
           + A+++F+EM     S    T+ ++L   +  G VE  + +F+ M +   +      +  
Sbjct: 368 KKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYAC 427

Query: 175 MINGYMKSGKINLARQLFGQM---PGRNLISWNSMISGYQLNG 214
           M++   ++ +++ A ++   M   PG  +  W S++   +++G
Sbjct: 428 MVDLLGRANRLDEAAKMVQDMRTEPGPKV--WGSLLGSCRIHG 468


>AT4G21065.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11246375-11247763 FORWARD
           LENGTH=462
          Length = 462

 Score =  382 bits (981), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 182/437 (41%), Positives = 282/437 (64%), Gaps = 2/437 (0%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N++++ Y   G +  A ++F +MP ++L++WNS+I+G+  NG+  EA+ L+  +  +G+ 
Sbjct: 27  NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 86

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P   TI+S LSA + +  L  G+ +H +M+K     +      L+++Y++CG +E A  +
Sbjct: 87  PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 146

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITFIGVLNACSHKGL 351
           F  + +K    WT++IVGL ++G   +A+ELF  M    G+ P  ITF+G+L ACSH G+
Sbjct: 147 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 206

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           V EG + F  M  EYKI P +EH+GC+VD+L RAG +++A   I+SMPM+PN VIW +LL
Sbjct: 207 VKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLL 266

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
            +   HG+ ++ E+A   +++ +P+ +G Y LLSN+YA+  +W  V  +R+ M   GV K
Sbjct: 267 GACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKK 326

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXX 531
             G S+VE   +++ F++GDKSHPQ+ AIYAKL+EM+ +L+  G+VP  S V        
Sbjct: 327 VPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVY-VDVEEE 385

Query: 532 XXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDN 591
                      ++AI+F L++   R+PI ++KNLRVC DCH   KL+S +Y REI+VRD 
Sbjct: 386 EKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDR 445

Query: 592 SRFHHFKNGTCSCNDFW 608
           SRFHHFKNG+CSC D+W
Sbjct: 446 SRFHHFKNGSCSCQDYW 462



 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 161/294 (54%), Gaps = 21/294 (7%)

Query: 57  VQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
           V+ G+ IH  V++ GFG   +VQ+SL+++YA  G++  A KVFDKM ++D+V+WNS+I+G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 117 YARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KS 168
           +A NG  E A+ L+ EM S+    D FT  +LL   AK G +   + V   M K    ++
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
             S N +++ Y + G++  A+ LF +M  +N +SW S+I G  +NG   EA+ELF+ +  
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 229 -EGLMPSHVTILSALSAVSGLAVLGNG-----RWIHSFMVKHCFDLDGVLGTSLIEMYSK 282
            EGL+P  +T +  L A S   ++  G     R    + ++   +  G     ++++ ++
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGC----MVDLLAR 239

Query: 283 CGSIESALAVFKAIA-NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
            G ++ A    K++     +  W  ++    +HG  D  L  F  ++ + ++P+
Sbjct: 240 AGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPN 291



 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 127/225 (56%), Gaps = 11/225 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  LV+WN +I+ +  N +  +AL L+ +M    + PDGFT+  ++  C+++ A+  G
Sbjct: 49  MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 108

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K++H Y++K+G   +    + L+++YA+ G +  A+ +FD+MVD++ VSW SLI G A N
Sbjct: 109 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 168

Query: 121 GNVEVAMKLFDEMPSRDAF-----TWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           G  + A++LF  M S +       T+  +L   + CG V+   E F +M ++  +     
Sbjct: 169 GFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIE 228

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNG 214
            +  M++   ++G++  A +    MP + N++ W +++    ++G
Sbjct: 229 HFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG 273



 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 2/158 (1%)

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
           G  IHS +++  F     +  SL+ +Y+ CG + SA  VF  +  K L  W ++I G   
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE 373
           +G  ++AL L+ EM   G+KP   T + +L+AC+  G +  G +    MI +  +   + 
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMI-KVGLTRNLH 125

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
               L+D+  R G +++AK + + M +  N V W SL+
Sbjct: 126 SSNVLLDLYARCGRVEEAKTLFDEM-VDKNSVSWTSLI 162


>AT5G46460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:18840305-18842398 FORWARD
           LENGTH=697
          Length = 697

 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/653 (33%), Positives = 347/653 (53%), Gaps = 67/653 (10%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +  +  +I+ Y  ++R  DAL LF +M   D++    +   +I GC     +    ++
Sbjct: 64  PHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVV----SWNSMISGCVECGDMNTAVKL 119

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYA------KWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
                     FD+  + S+V+  A      + G++  A ++F +M  +D  +WNS++ GY
Sbjct: 120 ----------FDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGY 169

Query: 118 ARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM----PKKSSVSWN 173
            + G V+ A+KLF +MP ++  +WT ++ GL +  +   A ++F  M     K +S  + 
Sbjct: 170 LQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFT 229

Query: 174 AMING-----------------------------------YMKSGKINLARQLFGQMPGR 198
            +I                                     Y    +I  +R++F +    
Sbjct: 230 CVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHE 289

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
            +  W +++SGY LN +  +A+ +F  +L+  ++P+  T  S L++ S L  L  G+ +H
Sbjct: 290 QVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMH 349

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
              VK   + D  +G SL+ MYS  G++  A++VF  I  K +  W +IIVG   HG   
Sbjct: 350 GVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGK 409

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM---INEYKIVPTVEHY 375
            A  +F +M R+  +P  ITF G+L+ACSH G +++G K F  M   IN   I   ++HY
Sbjct: 410 WAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINH--IDRKIQHY 467

Query: 376 GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP 435
            C+VDIL R G L++A+ +IE M ++PN+++W++LLS+ R H +++ GE AA  +   D 
Sbjct: 468 TCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDS 527

Query: 436 DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHP 495
            ++  Y LLSNIYA+AG+W  VS +R  MK+ G++K  G S V  RGK + F  GD+  P
Sbjct: 528 KSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQ--P 585

Query: 496 QTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMER 555
               IY KL  + +KLK  G+ PD    L                  RLAI+FGL+N   
Sbjct: 586 HCSRIYEKLEFLREKLKELGYAPDYRSAL-HDVEDEQKEEMLWYHSERLAIAFGLINTVE 644

Query: 556 RTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            + + +MKNLRVC DCH V KL+S + GREI++RD  RFHHFKNGTCSC D+W
Sbjct: 645 GSAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 152/294 (51%), Gaps = 31/294 (10%)

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKV 154
           AR+VF+++    V  +  +I GY R+  +  A+ LFDEMP RD  +W +++ G  +CG +
Sbjct: 54  AREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDM 113

Query: 155 EAAREVFDQMPKKSSVSWNAMIN-------------------------------GYMKSG 183
             A ++FD+MP++S VSW AM+N                               GY++ G
Sbjct: 114 NTAVKLFDEMPERSVVSWTAMVNGCFRSGKVDQAERLFYQMPVKDTAAWNSMVHGYLQFG 173

Query: 184 KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALS 243
           K++ A +LF QMPG+N+ISW +MI G   N R  EA++LF+ +L+  +  +       ++
Sbjct: 174 KVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVIT 233

Query: 244 AVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH 303
           A +       G  +H  ++K  F  +  +  SLI  Y+ C  I  +  VF    ++++  
Sbjct: 234 ACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAV 293

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           WTA++ G  ++   + AL +F  M R  + P+  TF   LN+CS  G +D G +
Sbjct: 294 WTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKE 347



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 127/266 (47%), Gaps = 22/266 (8%)

Query: 153 KVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQL 212
           +++ AREVF+Q+P      +  MI GY +S ++  A  LF +MP R+++SWNSMISG   
Sbjct: 50  RIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVE 109

Query: 213 NGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN----GRWIHSFMVKHCFDL 268
            G    A++LF+       MP   +++S  + V+G    G      R  +   VK     
Sbjct: 110 CGDMNTAVKLFDE------MPER-SVVSWTAMVNGCFRSGKVDQAERLFYQMPVK----- 157

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
           D     S++  Y + G ++ AL +FK +  K +  WT +I GL  +  + +AL+LF  M 
Sbjct: 158 DTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNML 217

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY--GCLVDILCRAG 386
           R  +K  +  F  V+ AC++      G +   ++I   K+    E Y    L+       
Sbjct: 218 RCCIKSTSRPFTCVITACANAPAFHMGIQVHGLII---KLGFLYEEYVSASLITFYANCK 274

Query: 387 HLQQAKNIIESMPMRPNKVIWMSLLS 412
            +  ++ + +   +     +W +LLS
Sbjct: 275 RIGDSRKVFDE-KVHEQVAVWTALLS 299



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/316 (22%), Positives = 126/316 (39%), Gaps = 53/316 (16%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + K ++VSWN II     + R   A ++F QM+  +  PD  T   ++  CS    +++G
Sbjct: 387 IFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKG 446

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +++  Y+            SS +N                  +DR +  +  ++D   R 
Sbjct: 447 RKLFYYM------------SSGIN-----------------HIDRKIQHYTCMVDILGRC 477

Query: 121 GNVEVAMKLFDEMPSR-DAFTWTALLDGLAKCGKVE----AAREVFDQMPKKSSVSWNAM 175
           G ++ A +L + M  + +   W ALL        V+    AA  +F+ +  KSS ++  +
Sbjct: 478 GKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFN-LDSKSSAAYVLL 536

Query: 176 INGYMKSGKINLARQLFGQMPGRNLI-----SW-------NSMISGYQLN-GRFLEAMEL 222
            N Y  +G+ +   +L  +M    ++     SW       +   SG Q +  R  E +E 
Sbjct: 537 SNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCSRIYEKLEF 596

Query: 223 FEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
               LKE G  P + + L  +       +L    W HS  +   F L   +  S + +  
Sbjct: 597 LREKLKELGYAPDYRSALHDVEDEQKEEML----WYHSERLAIAFGLINTVEGSAVTVMK 652

Query: 282 KCGSIESALAVFKAIA 297
                E    V K I+
Sbjct: 653 NLRVCEDCHTVIKLIS 668


>AT5G15340.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4982273-4984144 REVERSE
           LENGTH=623
          Length = 623

 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/615 (34%), Positives = 342/615 (55%), Gaps = 56/615 (9%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGF--GFDKFVQSSLVNMYAKWGEMGLARKVFDK--M 102
           +++ C+    ++ GK++H  +   G       ++ ++L   YA  GEM  A+K+FD+  +
Sbjct: 12  LLRHCAHRSFLRPGKELHAVLTTSGLKKAPRSYLSNALFQFYASSGEMVTAQKLFDEIPL 71

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR-------------------------- 136
            ++D V W +L+  ++R G +  +MKLF EM  +                          
Sbjct: 72  SEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 137 -------------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSG 183
                              AL+D   KCG V   + +F+++ +KS VSW  +++  +K  
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191

Query: 184 KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSAL 242
            +   R++F +MP RN ++W  M++GY   G   E +EL  E++ + G   + VT+ S L
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 243 SAVSGLAVLGNGRWIHSFMVKH--------CFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
           SA +    L  GRW+H + +K          +D D ++GT+L++MY+KCG+I+S++ VF+
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYD-DVMVGTALVDMYAKCGNIDSSMNVFR 310

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
            +  + +  W A+  GL MHG     +++F +M R  +KP  +TF  VL+ACSH G+VDE
Sbjct: 311 LMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIR-EVKPDDLTFTAVLSACSHSGIVDE 369

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G +CF  +   Y + P V+HY C+VD+L RAG +++A+ ++  MP+ PN+V+  SLL S 
Sbjct: 370 GWRCFHSL-RFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSC 428

Query: 415 RNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAG 474
             HG +EI E     LI+  P  T    L+SN+Y A G+ D    +R  +++RG+ K  G
Sbjct: 429 SVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPG 488

Query: 475 CSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLX-XXXXXXXX 533
            S +     ++RF  GD+SHP+TK IY KL E+ ++++ AG+VPD S ++          
Sbjct: 489 LSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEK 548

Query: 534 XXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSR 593
                    +LA+ FGLL  +  TP+ + KNLR+C DCH+  K++S +Y REII+RD +R
Sbjct: 549 EQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNR 608

Query: 594 FHHFKNGTCSCNDFW 608
           FH FK G+CSC+D+W
Sbjct: 609 FHQFKGGSCSCSDYW 623



 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 165/395 (41%), Gaps = 84/395 (21%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V W  ++S +       +++ LF +M    +  D  ++ C+   C++L  +   +Q HG 
Sbjct: 77  VDWTTLLSSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGV 136

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
            +K+G      V ++L++MY K G +   +++F+++ ++ VVSW  ++D   +   +E  
Sbjct: 137 AVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERG 196

Query: 127 MKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN------------- 173
            ++F EMP R+A  WT ++ G    G      E+  +M  +     N             
Sbjct: 197 REVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQ 256

Query: 174 ----------------------------------AMINGYMKSGKINLARQLFGQMPGRN 199
                                             A+++ Y K G I+ +  +F  M  RN
Sbjct: 257 SGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRN 316

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG-RWIH 258
           +++WN++ SG  ++G+    +++F  +++E + P  +T  + LSA S   ++  G R  H
Sbjct: 317 VVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFH 375

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
           S                 +  Y                   K+ H+  ++  LG  GL +
Sbjct: 376 S-----------------LRFYG---------------LEPKVDHYACMVDLLGRAGLIE 403

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
           +A  L   MR + + P+ +    +L +CS  G V+
Sbjct: 404 EAEIL---MREMPVPPNEVVLGSLLGSCSVHGKVE 435


>AT4G14850.1 | Symbols: LOI1, MEF11 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8513947-8516275 FORWARD
           LENGTH=684
          Length = 684

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 334/620 (53%), Gaps = 25/620 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +VSW  +IS    N   + AL+ F +M    ++P+ FT PC  K  + L     GKQIH 
Sbjct: 73  VVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHA 132

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
             +K G   D FV  S  +MY K      ARK+FD++ +R++ +WN+ I     +G    
Sbjct: 133 LAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPRE 192

Query: 126 AMKLFDEMPSRD----AFTWTALLD----------GLAKCGKVEAAREVFDQMPKKSSVS 171
           A++ F E    D    + T+ A L+          G+   G V   R  FD     + VS
Sbjct: 193 AIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLV--LRSGFD-----TDVS 245

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             N +I+ Y K  +I  +  +F +M  +N +SW S+++ Y  N    +A  L+    K+ 
Sbjct: 246 VCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDI 305

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           +  S   I S LSA +G+A L  GR IH+  VK C +    +G++L++MY KCG IE + 
Sbjct: 306 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSE 365

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM--RRIGMKPHAITFIGVLNACSH 348
             F  +  K L    ++I G    G  D AL LF EM  R  G  P+ +TF+ +L+ACS 
Sbjct: 366 QAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSR 425

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
            G V+ G K FD M + Y I P  EHY C+VD+L RAG +++A   I+ MP++P   +W 
Sbjct: 426 AGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWG 485

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
           +L ++ R HG  ++G  AA NL + DP  +G + LLSN +AAAG+W + + VRE +K  G
Sbjct: 486 ALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVG 545

Query: 469 VLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXX 528
           + K AG S +  + +++ F   D+SH   K I   L ++  +++ AG+ PD    L    
Sbjct: 546 IKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSL-YDL 604

Query: 529 XXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIV 588
                         +LA++FGLL++    PIRI KNLR+C DCH+  K +S    REIIV
Sbjct: 605 EEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIV 664

Query: 589 RDNSRFHHFKNGTCSCNDFW 608
           RDN+RFH FK+G CSC D+W
Sbjct: 665 RDNNRFHRFKDGICSCKDYW 684



 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 127/269 (47%), Gaps = 3/269 (1%)

Query: 150 KCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISG 209
           + G+V  AR V            N +IN Y K      AR +    P RN++SW S+ISG
Sbjct: 23  RLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISG 82

Query: 210 YQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLD 269
              NG F  A+  F  + +EG++P+  T   A  AV+ L +   G+ IH+  VK    LD
Sbjct: 83  LAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILD 142

Query: 270 GVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRR 329
             +G S  +MY K    + A  +F  I  + L  W A I      G   +A+E F+E RR
Sbjct: 143 VFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRR 202

Query: 330 IGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQ 389
           I   P++ITF   LNACS    ++ G +   +++        V     L+D   +   ++
Sbjct: 203 IDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS-GFDTDVSVCNGLIDFYGKCKQIR 261

Query: 390 QAKNIIESMPMRPNKVIWMSLLSSS-RNH 417
            ++ I   M  + N V W SL+++  +NH
Sbjct: 262 SSEIIFTEMGTK-NAVSWCSLVAAYVQNH 289



 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 170/408 (41%), Gaps = 81/408 (19%)

Query: 60  GKQIHGYVLK-IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           G+ +H  ++K +      F+ + L+NMY+K      AR V      R+VVSW SLI G A
Sbjct: 25  GRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLA 84

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLA----------------KCGKV---- 154
           +NG+   A+  F EM       + FT+      +A                KCG++    
Sbjct: 85  QNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVF 144

Query: 155 ---------------EAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRN 199
                          + AR++FD++P+++  +WNA I+                      
Sbjct: 145 VGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFIS---------------------- 182

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
               NS+      +GR  EA+E F    +    P+ +T  + L+A S    L  G  +H 
Sbjct: 183 ----NSVT-----DGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHG 233

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
            +++  FD D  +   LI+ Y KC  I S+  +F  +  K    W +++     +   ++
Sbjct: 234 LVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEK 293

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY---- 375
           A  L++  R+  ++        VL+AC+    ++ G       I+ + +   VE      
Sbjct: 294 ASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRS-----IHAHAVKACVERTIFVG 348

Query: 376 GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
             LVD+  + G ++ ++   + MP + N V   SL+    + G +++ 
Sbjct: 349 SALVDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMA 395


>AT2G01510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:230752-232506 REVERSE
           LENGTH=584
          Length = 584

 Score =  380 bits (975), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 318/558 (56%), Gaps = 11/558 (1%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IH  VL+ GF     + + L+      G+M  AR+VFD+M    +  WN+L  GY RN
Sbjct: 28  KKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRN 87

Query: 121 GNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVSW 172
                ++ L+ +M       D FT+  ++  +++ G       +   + K       +  
Sbjct: 88  QLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVA 147

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
             ++  YMK G+++ A  LF  M  ++L++WN+ ++     G    A+E F  +  + + 
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQ 207

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
               T++S LSA   L  L  G  I+    K   D + ++  + ++M+ KCG+ E+A  +
Sbjct: 208 FDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVL 267

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F+ +  + +  W+ +IVG  M+G + +AL LF  M+  G++P+ +TF+GVL+ACSH GLV
Sbjct: 268 FEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLV 327

Query: 353 DEGNKCFDMMI--NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           +EG + F +M+  N+  + P  EHY C+VD+L R+G L++A   I+ MP+ P+  IW +L
Sbjct: 328 NEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGAL 387

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L +   H ++ +G+  A  L+E  PD    + LLSNIYAAAGKWD V  VR  M++ G  
Sbjct: 388 LGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTK 447

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K A  S VE  GK++ F  GDKSHPQ+KAIY KL E+ KK++  G+VPDT  V       
Sbjct: 448 KVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVF-HDVEM 506

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       +LAI+FGL+      PIR+MKNLR C+DCHA +K +S++   EII+RD
Sbjct: 507 EEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRD 566

Query: 591 NSRFHHFKNGTCSCNDFW 608
            +RFHHF+NG CSC +FW
Sbjct: 567 KNRFHHFRNGVCSCKEFW 584



 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/396 (30%), Positives = 205/396 (51%), Gaps = 45/396 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           MHKP +  WN +   YV N    ++LLL+++M    + PD FT P V+K  S+L     G
Sbjct: 69  MHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCG 128

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H +V+K GFG    V + LV MY K+GE+  A  +F+ M  +D+V+WN+ +    + 
Sbjct: 129 FALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQT 188

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSW 172
           GN  +A++ F++M +     D+FT  ++L    + G +E   E++D+  K+    + +  
Sbjct: 189 GNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVE 248

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           NA ++ ++K G    AR LF +M  RN++SW++MI GY +NG   EA+ LF  +  EGL 
Sbjct: 249 NARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLR 308

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P++VT L  LSA S   ++  G+   S MV+                 S   ++E     
Sbjct: 309 PNYVTFLGVLSACSHAGLVNEGKRYFSLMVQ-----------------SNDKNLEP---- 347

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS-HKGL 351
                  +  H+  ++  LG  GL ++A E    ++++ ++P    +  +L AC+ H+ +
Sbjct: 348 -------RKEHYACMVDLLGRSGLLEEAYEF---IKKMPVEPDTGIWGALLGACAVHRDM 397

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLV-DILCRAG 386
           +  G K  D+++   +  P +  Y  L+ +I   AG
Sbjct: 398 I-LGQKVADVLV---ETAPDIGSYHVLLSNIYAAAG 429


>AT3G15930.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5387444-5389690 FORWARD
           LENGTH=687
          Length = 687

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/563 (35%), Positives = 318/563 (56%), Gaps = 42/563 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLH-AVQEGK 61
           +P +V WN +I  +       + + L+  ML   + PD  T P ++ G  R   A+  GK
Sbjct: 96  EPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGK 155

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           ++H +V+K G G + +VQ++LV MY+  G M +AR VFD+    DV SWN +I GY R  
Sbjct: 156 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 215

Query: 122 NVEVAMKLFDEMPSRDAFTWT--------------------------------------- 142
             E +++L  EM  R+  + T                                       
Sbjct: 216 EYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 274

Query: 143 -ALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI 201
            AL++  A CG+++ A  +F  M  +  +SW +++ GY++ G + LAR  F QMP R+ I
Sbjct: 275 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 334

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           SW  MI GY   G F E++E+F  +   G++P   T++S L+A + L  L  G WI +++
Sbjct: 335 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 394

Query: 262 VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
            K+    D V+G +LI+MY KCG  E A  VF  +  +    WTA++VGL  +G   +A+
Sbjct: 395 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 454

Query: 322 ELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDI 381
           ++F +M+ + ++P  IT++GVL+AC+H G+VD+  K F  M ++++I P++ HYGC+VD+
Sbjct: 455 KVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDM 514

Query: 382 LCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCY 441
           L RAG +++A  I+  MPM PN ++W +LL +SR H +  + E AA  ++E +PD    Y
Sbjct: 515 LGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVY 574

Query: 442 TLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIY 501
            LL NIYA   +W  +  VR  + +  + K  G S++E  G  + F+ GDKSH Q++ IY
Sbjct: 575 ALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIY 634

Query: 502 AKLREMSKKLKLAGHVPDTSQVL 524
            KL E++++   A ++PDTS++L
Sbjct: 635 MKLEELAQESTFAAYLPDTSELL 657



 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 186/402 (46%), Gaps = 46/402 (11%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKW--GEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           KQ+H   +  G   +   Q  L   +     G +  A K+F K+ + DVV WN++I G++
Sbjct: 51  KQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWS 110

Query: 119 R----NGNVEVAMKLFDEMPSRDAFTWTALLDGLAK------CGKVEAAREVFDQMPKKS 168
           +       V + + +  E  + D+ T+  LL+GL +      CGK      V   +    
Sbjct: 111 KVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNL 170

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
            V  NA++  Y   G +++AR +F +    ++ SWN MISGY     + E++EL   + +
Sbjct: 171 YVQ-NALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMER 229

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
             + P+ VT+L  LSA S +      + +H ++ +   +    L  +L+  Y+ CG ++ 
Sbjct: 230 NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDI 289

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHG---LA---------------------------- 317
           A+ +F+++  + +  WT+I+ G    G   LA                            
Sbjct: 290 AVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCF 349

Query: 318 DQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGC 377
           +++LE+F EM+  GM P   T + VL AC+H G ++ G +     I++ KI   V     
Sbjct: 350 NESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIG-EWIKTYIDKNKIKNDVVVGNA 408

Query: 378 LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           L+D+  + G  ++A+ +   M  R +K  W +++    N+G 
Sbjct: 409 LIDMYFKCGCSEKAQKVFHDMDQR-DKFTWTAMVVGLANNGQ 449



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 150/312 (48%), Gaps = 19/312 (6%)

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
           KK  V W + + G+     ++ A +LF ++P  +++ WN+MI G+       E + L+  
Sbjct: 70  KKLFVFWCSRLGGH-----VSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLN 124

Query: 226 LLKEGLMPSHVT---ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK 282
           +LKEG+ P   T   +L+ L    G   L  G+ +H  +VK     +  +  +L++MYS 
Sbjct: 125 MLKEGVTPDSHTFPFLLNGLKRDGG--ALACGKKLHCHVVKFGLGSNLYVQNALVKMYSL 182

Query: 283 CGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGV 342
           CG ++ A  VF     + +  W  +I G       ++++EL +EM R  + P ++T + V
Sbjct: 183 CGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLV 242

Query: 343 LNACSHKGLVDEGNKCFDM--MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM 400
           L+ACS    V + + C  +   ++E K  P++     LV+     G +  A  I  SM  
Sbjct: 243 LSACSK---VKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKA 299

Query: 401 RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHV 460
           R + + W S++      GNL++       +   D  +   +T++ + Y  AG +++   +
Sbjct: 300 R-DVISWTSIVKGYVERGNLKLARTYFDQMPVRDRIS---WTIMIDGYLRAGCFNESLEI 355

Query: 461 REMMKERGVLKD 472
              M+  G++ D
Sbjct: 356 FREMQSAGMIPD 367


>AT5G04780.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1384540-1386447 FORWARD
           LENGTH=635
          Length = 635

 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/622 (34%), Positives = 337/622 (54%), Gaps = 26/622 (4%)

Query: 10  NLIISCYVHNHRSNDALL-----LFRQMLHHDLLPDGFT--------LPCVIKGCSRLHA 56
           N +I C V   RSN + L     +       ++ P  ++        +  +++ C+R  A
Sbjct: 17  NFLIRCKVLPRRSNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCARNGA 76

Query: 57  VQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
           V E K  HG +++I    D  + + L+N Y+K G + LAR+VFD M++R +VSWN++I  
Sbjct: 77  VMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGL 136

Query: 117 YARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLA-KCGKVEAAREVFDQMPKKSSVS 171
           Y RN     A+ +F EM +       FT +++L      C  +E  +     +  K+ + 
Sbjct: 137 YTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKK--LHCLSVKTCID 194

Query: 172 WN-----AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
            N     A+++ Y K G I  A Q+F  M  ++ ++W+SM++GY  N  + EA+ L+   
Sbjct: 195 LNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRA 254

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
            +  L  +  T+ S + A S LA L  G+ +H+ + K  F  +  + +S ++MY+KCGS+
Sbjct: 255 QRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSL 314

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
             +  +F  +  K L  W  II G   H    + + LF +M++ GM P+ +TF  +L+ C
Sbjct: 315 RESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVC 374

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
            H GLV+EG + F +M   Y + P V HY C+VDIL RAG L +A  +I+S+P  P   I
Sbjct: 375 GHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASI 434

Query: 407 WMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
           W SLL+S R + NLE+ E AA  L E +P+  G + LLSNIYAA  +W++++  R+++++
Sbjct: 435 WGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRD 494

Query: 467 RGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXX 526
             V K  G S ++ + K++ F VG+  HP+ + I + L  +  K +  G+ P     L  
Sbjct: 495 CDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHEL-H 553

Query: 527 XXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREI 586
                           +LA+ FGL+ +   +P+RIMKNLR+C DCH   K  S    R I
Sbjct: 554 DVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFI 613

Query: 587 IVRDNSRFHHFKNGTCSCNDFW 608
           IVRD +RFHHF +G CSC DFW
Sbjct: 614 IVRDVNRFHHFSDGHCSCGDFW 635



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 167/340 (49%), Gaps = 13/340 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M + +LVSWN +I  Y  N   ++AL +F +M +       FT+  V+  C       E 
Sbjct: 122 MLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALEC 181

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K++H   +K     + +V ++L+++YAK G +  A +VF+ M D+  V+W+S++ GY +N
Sbjct: 182 KKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQN 241

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----W 172
            N E A+ L+         ++ FT ++++   +    +   +++   + K    S     
Sbjct: 242 KNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVA 301

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           ++ ++ Y K G +  +  +F ++  +NL  WN++ISG+  + R  E M LFE + ++G+ 
Sbjct: 302 SSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMH 361

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFM-VKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           P+ VT  S LS      ++  GR     M   +    + V  + ++++  + G +  A  
Sbjct: 362 PNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYE 421

Query: 292 VFKAIA-NKKLGHWTAIIVGLGMHG---LADQALELFMEM 327
           + K+I  +     W +++    ++    LA+ A E   E+
Sbjct: 422 LIKSIPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFEL 461


>AT1G15510.1 | Symbols: ATECB2, ECB2, VAC1 | Tetratricopeptide
           repeat (TPR)-like superfamily protein |
           chr1:5329111-5331711 FORWARD LENGTH=866
          Length = 866

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/614 (35%), Positives = 329/614 (53%), Gaps = 12/614 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SWN +IS Y  N   ++ L LF  M    + PD  TL  VI  C  L   + G
Sbjct: 257 MPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLG 316

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + IH YV+  GF  D  V +SL  MY   G    A K+F +M  +D+VSW ++I GY  N
Sbjct: 317 RDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYN 376

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW---- 172
              + A+  +  M       D  T  A+L   A  G ++   E+     K   +S+    
Sbjct: 377 FLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVA 436

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N +IN Y K   I+ A  +F  +P +N+ISW S+I+G +LN R  EA+ +F   +K  L 
Sbjct: 437 NNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQ 495

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P+ +T+ +AL+A + +  L  G+ IH+ +++    LD  L  +L++MY +CG + +A + 
Sbjct: 496 PNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQ 555

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F +   K +  W  ++ G    G     +ELF  M +  ++P  ITFI +L  CS   +V
Sbjct: 556 FNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMV 614

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            +G   F  M  +Y + P ++HY C+VD+L RAG LQ+A   I+ MP+ P+  +W +LL+
Sbjct: 615 RQGLMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLN 673

Query: 413 SSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           + R H  +++GE +A ++ E D  + G Y LL N+YA  GKW +V+ VR MMKE G+  D
Sbjct: 674 ACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVD 733

Query: 473 AGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXX 532
           AGCS VE +GK++ F+  DK HPQTK I   L    +K+   G +   S+          
Sbjct: 734 AGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVG-LTKISESSSMDETEIS 792

Query: 533 XXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNS 592
                     R AI+FGL+N     PI + KNL +C +CH   K +S    REI VRD  
Sbjct: 793 RDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAE 852

Query: 593 RFHHFKNGTCSCND 606
            FHHFK+G CSC D
Sbjct: 853 HFHHFKDGECSCGD 866



 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 199/406 (49%), Gaps = 11/406 (2%)

Query: 19  NHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFV 78
           N +  +A+ L   M    +  D      +++ C    A +EG +++   L         +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVEL 131

Query: 79  QSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM----- 133
            ++ + M+ ++G +  A  VF KM +R++ SWN L+ GYA+ G  + AM L+  M     
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGG 191

Query: 134 PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV----SWNAMINGYMKSGKINLAR 189
              D +T+  +L        +   +EV   + +          NA+I  Y+K G +  AR
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query: 190 QLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLA 249
            LF +MP R++ISWN+MISGY  NG   E +ELF  +    + P  +T+ S +SA   L 
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIV 309
               GR IH++++   F +D  +  SL +MY   GS   A  +F  +  K +  WT +I 
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIV 369
           G   + L D+A++ +  M +  +KP  IT   VL+AC+  G +D G +   + I   +++
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKA-RLI 430

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
             V     L+++  +   + +A +I  ++P R N + W S+++  R
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLR 475



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 139/306 (45%), Gaps = 11/306 (3%)

Query: 116 GYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAARE--------VFDQMPKK 167
           G   NG +E AMKL + M          +   L +  + + A+E            M   
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
                NA +  +++ G +  A  +FG+M  RNL SWN ++ GY   G F EAM L+  +L
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187

Query: 228 -KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
              G+ P   T    L    G+  L  G+ +H  +V++ ++LD  +  +LI MY KCG +
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           +SA  +F  +  + +  W A+I G   +G+  + LELF  MR + + P  +T   V++AC
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISAC 307

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
              G    G      +I        +     L  +   AG  ++A+ +   M  R + V 
Sbjct: 308 ELLGDRRLGRDIHAYVITT-GFAVDISVCNSLTQMYLNAGSWREAEKLFSRME-RKDIVS 365

Query: 407 WMSLLS 412
           W +++S
Sbjct: 366 WTTMIS 371


>AT3G02010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:337965-340442 FORWARD
           LENGTH=825
          Length = 825

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/613 (33%), Positives = 330/613 (53%), Gaps = 14/613 (2%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V++N +I+ Y  +    +++ LF +M      P  FT   V+K    LH    G+Q+H  
Sbjct: 216 VTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHAL 275

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
            +  GF  D  V + +++ Y+K   +   R +FD+M + D VS+N +I  Y++    E +
Sbjct: 276 SVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEAS 335

Query: 127 MKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW----NAMING 178
           +  F EM      R  F +  +L   A    ++  R++  Q    ++ S     N++++ 
Sbjct: 336 LHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDM 395

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y K      A  +F  +P R  +SW ++ISGY   G     ++LF  +    L     T 
Sbjct: 396 YAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTF 455

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL-GTSLIEMYSKCGSIESALAVFKAIA 297
            + L A +  A L  G+ +H+F+++   +L+ V  G+ L++MY+KCGSI+ A+ VF+ + 
Sbjct: 456 ATVLKASASFASLLLGKQLHAFIIRSG-NLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP 514

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           ++    W A+I     +G  + A+  F +M   G++P +++ +GVL ACSH G V++G +
Sbjct: 515 DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTE 574

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
            F  M   Y I P  +HY C++D+L R G   +A+ +++ MP  P++++W S+L++ R H
Sbjct: 575 YFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIH 634

Query: 418 GNLEIGEYAAHNLIEADP--DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
            N  + E AA  L   +   DA   Y  +SNIYAAAG+W+KV  V++ M+ERG+ K    
Sbjct: 635 KNQSLAERAAEKLFSMEKLRDAAA-YVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAY 693

Query: 476 SIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXX 535
           S VE   K++ F   D++HP    I  K+ E++ +++  G+ PDTS V+           
Sbjct: 694 SWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVV-QDVDEQMKIE 752

Query: 536 XXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFH 595
                  RLA++F L++     PI +MKNLR C DCHA  KL+S I  REI VRD SRFH
Sbjct: 753 SLKYHSERLAVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFH 812

Query: 596 HFKNGTCSCNDFW 608
           HF  G CSC D+W
Sbjct: 813 HFSEGVCSCGDYW 825



 Score =  173 bits (438), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 222/462 (48%), Gaps = 22/462 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD--LLPDGFTLPCVIKGCSRLHAVQ 58
           M   T+V+W +++  Y  N   ++A  LFRQM       LPD  T   ++ GC+      
Sbjct: 105 MPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQN 164

Query: 59  EGKQIHGYVLKIGFGFDKF--VQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
              Q+H + +K+GF  + F  V + L+  Y +   + LA  +F+++ ++D V++N+LI G
Sbjct: 165 AVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITG 224

Query: 117 YARNGNVEVAMKLFDEM------PSRDAFTWTALLDGLA-----KCGKVEAAREVFDQMP 165
           Y ++G    ++ LF +M      PS   FT++ +L  +        G+   A  V     
Sbjct: 225 YEKDGLYTESIHLFLKMRQSGHQPSD--FTFSGVLKAVVGLHDFALGQQLHALSVTTGFS 282

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
           + +SV  N +++ Y K  ++   R LF +MP  + +S+N +IS Y    ++  ++  F  
Sbjct: 283 RDASVG-NQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFRE 341

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +   G    +    + LS  + L+ L  GR +H   +    D    +G SL++MY+KC  
Sbjct: 342 MQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM 401

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
            E A  +FK++  +    WTA+I G    GL    L+LF +MR   ++    TF  VL A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV 405
            +    +  G +    +I    +       G LVD+  + G ++ A  + E MP R N V
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSG-LVDMYAKCGSIKDAVQVFEEMPDR-NAV 519

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEA--DPDATGCYTLLS 445
            W +L+S+  ++G+ E    A   +IE+   PD+     +L+
Sbjct: 520 SWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLT 561



 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 51/400 (12%)

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           + +++   ++K GF  D    + +V    + G++  ARKV+D+M  ++ VS N++I G+ 
Sbjct: 31  DTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHV 90

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW------ 172
           + G+V  A  LFD MP R   TWT L+   A+    + A ++F QM + SS +       
Sbjct: 91  KTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTF 150

Query: 173 -------------------------------------NAMINGYMKSGKINLARQLFGQM 195
                                                N ++  Y +  +++LA  LF ++
Sbjct: 151 TTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEI 210

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
           P ++ +++N++I+GY+ +G + E++ LF  + + G  PS  T    L AV GL     G+
Sbjct: 211 PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQ 270

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHG 315
            +H+  V   F  D  +G  +++ YSK   +     +F  +       +  +I       
Sbjct: 271 QLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQAD 330

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK--CFDMMINEYKIVPTVE 373
             + +L  F EM+ +G       F  +L+  ++   +  G +  C  ++     I+    
Sbjct: 331 QYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSIL---- 386

Query: 374 HYG-CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
           H G  LVD+  +    ++A+ I +S+P R   V W +L+S
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSLPQR-TTVSWTALIS 425



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 115/221 (52%), Gaps = 14/221 (6%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           T VSW  +IS YV        L LF +M   +L  D  T   V+K  +   ++  GKQ+H
Sbjct: 416 TTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH 475

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
            ++++ G   + F  S LV+MYAK G +  A +VF++M DR+ VSWN+LI  +A NG+ E
Sbjct: 476 AFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGE 535

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM-------PKKSSVSWN 173
            A+  F +M       D+ +   +L   + CG VE   E F  M       PKK    + 
Sbjct: 536 AAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKK--HYA 593

Query: 174 AMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLN 213
            M++   ++G+   A +L  +MP   + I W+S+++  +++
Sbjct: 594 CMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIH 634


>AT1G31920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11461864-11463684 REVERSE
           LENGTH=606
          Length = 606

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/569 (35%), Positives = 319/569 (56%), Gaps = 14/569 (2%)

Query: 53  RLHAVQEGKQIHGYVLKIGFGFDKFVQSSLV---NMYAKW-GEMGLARKVFDKMVDRDVV 108
           R H + E KQ+H   +K+   +     +S V     ++ W   M  A  +F  + D    
Sbjct: 39  RCHNIDEFKQVHARFIKLSLFYSSSFSASSVLAKCAHSGWENSMNYAASIFRGIDDPCTF 98

Query: 109 SWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM 164
            +N++I GY    + E A+  ++EM  R    D FT+  LL    +   +   +++  Q+
Sbjct: 99  DFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQV 158

Query: 165 PK----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
            K          N++IN Y + G++ L+  +F ++  +   SW+SM+S     G + E +
Sbjct: 159 FKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECL 218

Query: 221 ELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEM 279
            LF  +  E  L      ++SAL A +    L  G  IH F++++  +L+ ++ TSL++M
Sbjct: 219 LLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDM 278

Query: 280 YSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
           Y KCG ++ AL +F+ +  +    ++A+I GL +HG  + AL +F +M + G++P  + +
Sbjct: 279 YVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVY 338

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
           + VLNACSH GLV EG + F  M+ E K+ PT EHYGCLVD+L RAG L++A   I+S+P
Sbjct: 339 VSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIP 398

Query: 400 MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSH 459
           +  N VIW + LS  R   N+E+G+ AA  L++      G Y L+SN+Y+    WD V+ 
Sbjct: 399 IEKNDVIWRTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVAR 458

Query: 460 VREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPD 519
            R  +  +G+ +  G SIVE +GK +RF+  D+SHP+ K IY  L +M  +LK  G+ PD
Sbjct: 459 TRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPD 518

Query: 520 TSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLS 579
            +Q+L                  ++AI+FGLL     + I+I +NLR+C+DCH  TK +S
Sbjct: 519 LTQIL-LNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKIS 577

Query: 580 AIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            IY REI+VRD +RFH FK GTCSC D+W
Sbjct: 578 MIYEREIVVRDRNRFHLFKGGTCSCKDYW 606



 Score =  162 bits (409), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 20/312 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P    +N +I  YV+     +AL  + +M+     PD FT PC++K C+RL +++EGKQI
Sbjct: 95  PCTFDFNTMIRGYVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQI 154

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           HG V K+G   D FVQ+SL+NMY + GEM L+  VF+K+  +   SW+S++   A  G  
Sbjct: 155 HGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMW 214

Query: 124 EVAMKLFDEMPSRDAF--TWTALLDGLAKCGKVEAARE-------VFDQMPKKSSVSWNA 174
              + LF  M S        + ++  L  C    A          +   + + + +   +
Sbjct: 215 SECLLLFRGMCSETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTS 274

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +++ Y+K G ++ A  +F +M  RN +++++MISG  L+G    A+ +F  ++KEGL P 
Sbjct: 275 LVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPD 334

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS------LIEMYSKCGSIES 288
           HV  +S L+A S   ++  GR + + M+K     +G +  +      L+++  + G +E 
Sbjct: 335 HVVYVSVLNACSHSGLVKEGRRVFAEMLK-----EGKVEPTAEHYGCLVDLLGRAGLLEE 389

Query: 289 ALAVFKAIANKK 300
           AL   ++I  +K
Sbjct: 390 ALETIQSIPIEK 401



 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 122/247 (49%), Gaps = 16/247 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           +   T  SW+ ++S        ++ LLLFR M    +L  +   +   +  C+   A+  
Sbjct: 193 LESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSALLACANTGALNL 252

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G  IHG++L+     +  VQ+SLV+MY K G +  A  +F KM  R+ ++++++I G A 
Sbjct: 253 GMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNLTYSAMISGLAL 312

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           +G  E A+++F +M       D   + ++L+  +  G V+  R VF +M K+  V     
Sbjct: 313 HGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEMLKEGKVEPTAE 372

Query: 172 -WNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            +  +++   ++G +  A +    +P  +N + W + +S      R  + +EL ++  +E
Sbjct: 373 HYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLS----QCRVRQNIELGQIAAQE 428

Query: 230 GL-MPSH 235
            L + SH
Sbjct: 429 LLKLSSH 435


>AT1G04840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:1362867-1364962 REVERSE
           LENGTH=665
          Length = 665

 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/603 (33%), Positives = 316/603 (52%), Gaps = 36/603 (5%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLK 69
           N +I     N R   ++  F  ML   + PD  T P V+K  S+L     G+ +H   LK
Sbjct: 95  NALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLK 154

Query: 70  IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKL 129
                D FV+ SLV+M                               YA+ G ++ A ++
Sbjct: 155 NFVDCDSFVRLSLVDM-------------------------------YAKTGQLKHAFQV 183

Query: 130 FDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKI 185
           F+E P R        W  L++G  +   +  A  +F  MP+++S SW+ +I GY+ SG++
Sbjct: 184 FEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGEL 243

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV 245
           N A+QLF  MP +N++SW ++I+G+   G +  A+  +  +L++GL P+  TI + LSA 
Sbjct: 244 NRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSAC 303

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWT 305
           S    LG+G  IH +++ +   LD  +GT+L++MY+KCG ++ A  VF  + +K +  WT
Sbjct: 304 SKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWT 363

Query: 306 AIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE 365
           A+I G  +HG   QA++ F +M   G KP  + F+ VL AC +   VD G   FD M  +
Sbjct: 364 AMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLD 423

Query: 366 YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEY 425
           Y I PT++HY  +VD+L RAG L +A  ++E+MP+ P+   W +L  + + H      E 
Sbjct: 424 YAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAES 483

Query: 426 AAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLN 485
            + NL+E DP+  G Y  L   +A+ G    V   R  +++R   +  G S +E  G+LN
Sbjct: 484 VSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLN 543

Query: 486 RFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLA 545
           +F  GD SH  T+ I  KL E+       G+ P     +                  +LA
Sbjct: 544 KFSAGDYSHKLTQEIGLKLDEIISLAIQKGYNPGADWSI-HDIEEEEKENVTGIHSEKLA 602

Query: 546 ISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCN 605
           ++ G L     T IRI+KNLR+C DCH++ K +S I  R+I++RD  +FHHFK+G CSC 
Sbjct: 603 LTLGFLRTAPGTTIRIIKNLRICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCG 662

Query: 606 DFW 608
           D+W
Sbjct: 663 DYW 665



 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 120/238 (50%), Gaps = 10/238 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW  +I+ +        A+  + +ML   L P+ +T+  V+  CS+  A+  G
Sbjct: 253 MPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSG 312

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            +IHGY+L  G   D+ + ++LV+MYAK GE+  A  VF  M  +D++SW ++I G+A +
Sbjct: 313 IRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVH 372

Query: 121 GNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           G    A++ F +M       D   + A+L       +V+     FD M    ++      
Sbjct: 373 GRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKH 432

Query: 172 WNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
           +  +++   ++GK+N A +L   MP   +L +W ++    + +  +  A  + + LL+
Sbjct: 433 YVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLE 490



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 83/360 (23%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + K +++ WN++I+ Y      + A  LFR M            P    G          
Sbjct: 191 IKKESILIWNVLINGYCRAKDMHMATTLFRSM------------PERNSGS--------- 229

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
                              S+L+  Y   GE+  A+++F+ M +++VVSW +LI+G+++ 
Sbjct: 230 ------------------WSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQT 271

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAARE----VFDQMPKKSSVSW 172
           G+ E A+  + EM  +    + +T  A+L   +K G + +       + D   K      
Sbjct: 272 GDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIG 331

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            A+++ Y K G+++ A  +F  M  ++++SW +MI G+ ++GRF +A++ F  ++  G  
Sbjct: 332 TALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMYSGEK 391

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIESALA 291
           P  V  L+ L+A                    C +   V LG +  +      +IE  L 
Sbjct: 392 PDEVVFLAVLTA--------------------CLNSSEVDLGLNFFDSMRLDYAIEPTLK 431

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC-SHKG 350
                      H+  ++  LG  G  ++A EL   M    + P   T+  +  AC +HKG
Sbjct: 432 -----------HYVLVVDLLGRAGKLNEAHELVENM---PINPDLTTWAALYRACKAHKG 477



 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 149/356 (41%), Gaps = 33/356 (9%)

Query: 131 DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMI-----NGYMKSGKI 185
           D   S D   + +L+     C    + R V  Q+ ++  +S          +  +KS   
Sbjct: 22  DRQASPDESHFISLIHA---CKDTASLRHVHAQILRRGVLSSRVAAQLVSCSSLLKSPDY 78

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV 245
           +L+  +F     RN    N++I G   N RF  ++  F ++L+ G+ P  +T    L + 
Sbjct: 79  SLS--IFRNSEERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSN 136

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA----IANKKL 301
           S L     GR +H+  +K+  D D  +  SL++MY+K G ++ A  VF+     I  + +
Sbjct: 137 SKLGFRWLGRALHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESI 196

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
             W  +I G         A  LF  M        +    G +++    G ++   + F++
Sbjct: 197 LIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDS----GELNRAKQLFEL 252

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWMSLLSSSRNHG 418
           M  +      V  +  L++   + G  + A +    M    ++PN+    ++LS+    G
Sbjct: 253 MPEK-----NVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSG 307

Query: 419 NL----EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
            L     I  Y   N I+ D  A G  T L ++YA  G+ D  + V   M  + +L
Sbjct: 308 ALGSGIRIHGYILDNGIKLD-RAIG--TALVDMYAKCGELDCAATVFSNMNHKDIL 360


>AT5G52630.1 | Symbols: MEF1 | mitochondrial RNAediting factor 1 |
           chr5:21350375-21352141 FORWARD LENGTH=588
          Length = 588

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/584 (36%), Positives = 326/584 (55%), Gaps = 18/584 (3%)

Query: 41  GFTLPC--------VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEM 92
            F +PC        ++   +R  +  +G Q+HGYV+K G      V ++L+N Y+K    
Sbjct: 7   AFFVPCHNYNQICDLLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLP 66

Query: 93  GLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS----RDAFTWTALLDGL 148
             +R+ F+    +   +W+S+I  +A+N    ++++   +M +     D     +     
Sbjct: 67  FDSRRAFEDSPQKSSTTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSC 126

Query: 149 AKCGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWN 204
           A   + +  R V     K    +     +++++ Y K G+I  AR++F +MP RN+++W+
Sbjct: 127 AILSRCDIGRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWS 186

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKH 264
            M+ GY   G   EA+ LF+  L E L  +  +  S +S  +   +L  GR IH   +K 
Sbjct: 187 GMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKS 246

Query: 265 CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELF 324
            FD    +G+SL+ +YSKCG  E A  VF  +  K LG W A++     H    + +ELF
Sbjct: 247 SFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELF 306

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
             M+  GMKP+ ITF+ VLNACSH GLVDEG   FD M  E +I PT +HY  LVD+L R
Sbjct: 307 KRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGR 365

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLL 444
           AG LQ+A  +I +MP+ P + +W +LL+S   H N E+  +AA  + E  P ++G +  L
Sbjct: 366 AGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISL 425

Query: 445 SNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKL 504
           SN YAA G+++  +  R+++++RG  K+ G S VE R K++ F  G++ H ++K IY KL
Sbjct: 426 SNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKL 485

Query: 505 REMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKN 564
            E+ ++++ AG++ DTS VL                  RLAI+FGL+      PIR+MKN
Sbjct: 486 AELGEEMEKAGYIADTSYVL-REVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKN 544

Query: 565 LRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           LRVC DCH   K +S    R IIVRDN+RFH F++G CSCND+W
Sbjct: 545 LRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 164/325 (50%), Gaps = 16/325 (4%)

Query: 15  CYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGF 74
           C+  N     +L   ++M+  +L PD   LP   K C+ L     G+ +H   +K G+  
Sbjct: 90  CFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHCLSMKTGYDA 149

Query: 75  DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM- 133
           D FV SSLV+MYAK GE+  ARK+FD+M  R+VV+W+ ++ GYA+ G  E A+ LF E  
Sbjct: 150 DVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEAL 209

Query: 134 ---PSRDAFTWTALLDGLAKCGKVEAAREV----FDQMPKKSSVSWNAMINGYMKSGKIN 186
               + + +++++++   A    +E  R++           SS   +++++ Y K G   
Sbjct: 210 FENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPE 269

Query: 187 LARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
            A Q+F ++P +NL  WN+M+  Y  +    + +ELF+ +   G+ P+ +T L+ L+A S
Sbjct: 270 GAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACS 329

Query: 247 GLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA-NKKLGHWT 305
              ++  GR+    M +   +       SL++M  + G ++ AL V   +  +     W 
Sbjct: 330 HAGLVDEGRYYFDQMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWG 389

Query: 306 AIIVGLGMHG-------LADQALEL 323
           A++    +H         AD+  EL
Sbjct: 390 ALLTSCTVHKNTELAAFAADKVFEL 414



 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 111/205 (54%), Gaps = 10/205 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+W+ ++  Y     + +AL LF++ L  +L  + ++   VI  C+    ++ G
Sbjct: 177 MPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELG 236

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QIHG  +K  F    FV SSLV++Y+K G    A +VF+++  +++  WN+++  YA++
Sbjct: 237 RQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQH 296

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
            + +  ++LF  M       +  T+  +L+  +  G V+  R  FDQM K+S +      
Sbjct: 297 SHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKH 355

Query: 172 WNAMINGYMKSGKINLARQLFGQMP 196
           + ++++   ++G++  A ++   MP
Sbjct: 356 YASLVDMLGRAGRLQEALEVITNMP 380


>AT5G40410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:16171385-16173211 FORWARD
           LENGTH=608
          Length = 608

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 317/584 (54%), Gaps = 13/584 (2%)

Query: 35  HDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGL 94
           H L  +  +L   +K C    +++  + +H  V+K       F+   LV  Y + G    
Sbjct: 28  HSLDANVSSLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVC 84

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDA------FTWTALLDGL 148
           A K+FD+M +RD+VSWNSLI GY+  G +    ++   M   +        T+ +++   
Sbjct: 85  AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISAC 144

Query: 149 AKCGKVEAAREVFDQMPKKSSVSW----NAMINGYMKSGKINLARQLFGQMPGRNLISWN 204
              G  E  R +   + K   +      NA IN Y K+G +  + +LF  +  +NL+SWN
Sbjct: 145 VYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWN 204

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKH 264
           +MI  +  NG   + +  F +  + G  P   T L+ L +   + V+   + IH  ++  
Sbjct: 205 TMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFG 264

Query: 265 CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELF 324
            F  +  + T+L+++YSK G +E +  VF  I +     WTA++     HG    A++ F
Sbjct: 265 GFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHF 324

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
             M   G+ P  +TF  +LNACSH GLV+EG   F+ M   Y+I P ++HY C+VD+L R
Sbjct: 325 ELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGR 384

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLL 444
           +G LQ A  +I+ MPM P+  +W +LL + R + + ++G  AA  L E +P     Y +L
Sbjct: 385 SGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVML 444

Query: 445 SNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKL 504
           SNIY+A+G W   S +R +MK++G+++ +GCS +EH  K+++F+VGD SHP+++ I  KL
Sbjct: 445 SNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKL 504

Query: 505 REMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKN 564
           +E+ KK+K        ++ +                  ++A++FGLL +    PI I KN
Sbjct: 505 KEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKN 564

Query: 565 LRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           LR+C DCH   K +S I  R II+RD+ RFHHF +G+CSC+D+W
Sbjct: 565 LRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 165/358 (46%), Gaps = 47/358 (13%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL--LPDGFTLPCVIKGCSRLHAVQ 58
           M +  LVSWN +IS Y           +  +M+  ++   P+  T   +I  C    + +
Sbjct: 92  MPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKE 151

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           EG+ IHG V+K G   +  V ++ +N Y K G++  + K+F+ +  +++VSWN++I  + 
Sbjct: 152 EGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHL 211

Query: 119 RNGNVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREV-----FDQMPKKS 168
           +NG  E  +  F+ M  R     D  T+ A+L      G V  A+ +     F       
Sbjct: 212 QNGLAEKGLAYFN-MSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNK 270

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
            ++  A+++ Y K G++  +  +F ++   + ++W +M++ Y  +G   +A++ FE+++ 
Sbjct: 271 CIT-TALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVH 329

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
            G+ P HVT    L+A S           HS +V+         G    E  SK   I  
Sbjct: 330 YGISPDHVTFTHLLNACS-----------HSGLVEE--------GKHYFETMSKRYRI-- 368

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
                    + +L H++ ++  LG  GL   A  L  EM    M+P +  +  +L AC
Sbjct: 369 ---------DPRLDHYSCMVDLLGRSGLLQDAYGLIKEM---PMEPSSGVWGALLGAC 414


>AT4G01030.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr4:448336-450642 REVERSE LENGTH=768
          Length = 768

 Score =  360 bits (924), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 186/614 (30%), Positives = 334/614 (54%), Gaps = 40/614 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP +V+WN ++S Y     S DA+ + ++M    L P   ++  +++  +    ++ GK 
Sbjct: 187 KPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKA 246

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           IHGY+L+    +D +V+++L++M                               Y + G 
Sbjct: 247 IHGYILRNQLWYDVYVETTLIDM-------------------------------YIKTGY 275

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMING 178
           +  A  +FD M +++   W +L+ GL+    ++ A  +  +M K+     +++WN++ +G
Sbjct: 276 LPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASG 335

Query: 179 YMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           Y   GK   A  + G+M  +    N++SW ++ SG   NG F  A+++F  + +EG+ P+
Sbjct: 336 YATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPN 395

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
             T+ + L  +  L++L +G+ +H F ++     D  + T+L++MY K G ++SA+ +F 
Sbjct: 396 AATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFW 455

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
            I NK L  W  +++G  M G  ++ +  F  M   GM+P AITF  VL+ C + GLV E
Sbjct: 456 GIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQE 515

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G K FD+M + Y I+PT+EH  C+VD+L R+G+L +A + I++M ++P+  IW + LSS 
Sbjct: 516 GWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSC 575

Query: 415 RNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAG 474
           + H +LE+ E A   L   +P  +  Y ++ N+Y+   +W+ V  +R +M+   V     
Sbjct: 576 KIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDL 635

Query: 475 CSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXX 534
            S ++    ++ F    K+HP    IY +L ++  ++K +G+VPDTS  +          
Sbjct: 636 WSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTS-CIHQDISDSEKE 694

Query: 535 XXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRF 594
                   +LA+++GL+  +   PIR++KN  +C+D H V K +S +  REI++++ +R 
Sbjct: 695 KLLMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARV 754

Query: 595 HHFKNGTCSCNDFW 608
           HHF++G CSCND W
Sbjct: 755 HHFRDGKCSCNDSW 768



 Score =  150 bits (379), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 214/496 (43%), Gaps = 90/496 (18%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K   ++WN I+   + +     A+ LFR+M          T+  +++ CS      EG
Sbjct: 49  MPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEG 108

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +QIHGYVL++G   +  + +SL+ MY++ G++ L+RKVF+ M DR++ SWNS++  Y + 
Sbjct: 109 RQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKL 168

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSV 170
           G V+ A+ L DEM       D  TW +LL G A  G  + A  V  +M      P  SS+
Sbjct: 169 GYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSI 228

Query: 171 S---------------------------W------NAMINGYMKSGKINLARQLFGQMPG 197
           S                           W        +I+ Y+K+G +  AR +F  M  
Sbjct: 229 SSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDA 288

Query: 198 RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWI 257
           +N+++WNS++SG        +A  L   + KEG+ P                        
Sbjct: 289 KNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKP------------------------ 324

Query: 258 HSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTAIIVGLGM 313
                      D +   SL   Y+  G  E AL V   +  K +      WTAI  G   
Sbjct: 325 -----------DAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSK 373

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE 373
           +G    AL++F++M+  G+ P+A T   +L       L+  G +     + +  ++    
Sbjct: 374 NGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRK-NLICDAY 432

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI--WMSLLSSSRNHGNLEIGEYAAHNLI 431
               LVD+  ++G LQ A  I   +    NK +  W  +L      G  E G  A   ++
Sbjct: 433 VATALVDMYGKSGDLQSAIEIFWGI---KNKSLASWNCMLMGYAMFGRGEEGIAAFSVML 489

Query: 432 EA--DPDATGCYTLLS 445
           EA  +PDA    ++LS
Sbjct: 490 EAGMEPDAITFTSVLS 505



 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 188/401 (46%), Gaps = 52/401 (12%)

Query: 60  GKQIHGYVLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           G  IHG ++K G    D  V S+ +  Y +   +G A K+FD+M  RD ++WN ++    
Sbjct: 6   GLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNL 65

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTALL----------DGLA------------------- 149
           R+GN E A++LF EM    A  + + +          +G A                   
Sbjct: 66  RSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVS 125

Query: 150 ----------KCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMP--- 196
                     + GK+E +R+VF+ M  ++  SWN++++ Y K G ++ A  L  +M    
Sbjct: 126 MCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICG 185

Query: 197 -GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
              ++++WNS++SGY   G   +A+ + + +   GL PS  +I S L AV+    L  G+
Sbjct: 186 LKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGK 245

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHG 315
            IH +++++    D  + T+LI+MY K G +  A  VF  +  K +  W +++ GL    
Sbjct: 246 AIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYAC 305

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM--INEYKIVPTVE 373
           L   A  L + M + G+KP AIT+  + +  +  G   +  K  D++  + E  + P V 
Sbjct: 306 LLKDAEALMIRMEKEGIKPDAITWNSLASGYATLG---KPEKALDVIGKMKEKGVAPNVV 362

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLL 411
            +  +     + G+ + A  +   M    + PN     +LL
Sbjct: 363 SWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLL 403



 Score = 92.8 bits (229), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 160/388 (41%), Gaps = 52/388 (13%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +A +  Y +   +  A +LF +MP R+ ++WN ++     +G + +A+ELF  +   G  
Sbjct: 27  SASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAK 86

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
               T++  L   S       GR IH ++++   + +  +  SLI MYS+ G +E +  V
Sbjct: 87  AYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKV 146

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F ++ ++ L  W +I+      G  D A+ L  EM   G+KP  +T+  +L+  + KGL 
Sbjct: 147 FNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLS 206

Query: 353 DEGNKCFDMM---------------------INEYKIVPTVEHY-------------GCL 378
            +       M                         K+   +  Y               L
Sbjct: 207 KDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTL 266

Query: 379 VDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA--DPD 436
           +D+  + G+L  A+ + + M  + N V W SL+S       L+  E     + +    PD
Sbjct: 267 IDMYIKTGYLPYARMVFDMMDAK-NIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPD 325

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD--------AGCSIV-EHRGKLNRF 487
           A    +L S  YA  GK +K   V   MKE+GV  +        +GCS     R  L  F
Sbjct: 326 AITWNSLASG-YATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVF 384

Query: 488 IVGDKSHPQTKAIYAKLREMSKKLKLAG 515
           I       Q + +      MS  LK+ G
Sbjct: 385 I-----KMQEEGVGPNAATMSTLLKILG 407


>AT3G49710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18437845-18440010 FORWARD
           LENGTH=721
          Length = 721

 Score =  360 bits (924), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 212/623 (34%), Positives = 337/623 (54%), Gaps = 20/623 (3%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGC-SRLHAVQEGK 61
           +P  VS+N +IS Y     +  A++LF++M       DGFTL  +I  C  R+  +   K
Sbjct: 102 QPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLI---K 158

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD-RDVVSWNSLIDGYARN 120
           Q+H + +  GF     V ++ V  Y+K G +  A  VF  M + RD VSWNS+I  Y ++
Sbjct: 159 QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQH 218

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSW 172
                A+ L+ EM  +    D FT  ++L+ L     +   R+   ++ K    ++S   
Sbjct: 219 KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVG 278

Query: 173 NAMINGYMKSGKIN---LARQLFGQMPGRNLISWNSMISGYQLNGRFLE-AMELFEVLLK 228
           + +I+ Y K G  +    + ++F ++   +L+ WN+MISGY +N    E A++ F  + +
Sbjct: 279 SGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQR 338

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIE 287
            G  P   + +   SA S L+     + IH   +K     + + +  +LI +Y K G+++
Sbjct: 339 IGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQ 398

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            A  VF  +       +  +I G   HG   +AL L+  M   G+ P+ ITF+ VL+AC+
Sbjct: 399 DARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACA 458

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           H G VDEG + F+ M   +KI P  EHY C++D+L RAG L++A+  I++MP +P  V W
Sbjct: 459 HCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAW 518

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            +LL + R H N+ + E AA+ L+   P A   Y +L+N+YA A KW++++ VR+ M+ +
Sbjct: 519 AALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGK 578

Query: 468 GVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDT--SQVLX 525
            + K  GCS +E + K + F+  D SHP  + +   L EM KK+K  G+V D   + V  
Sbjct: 579 RIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKE 638

Query: 526 XXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGRE 585
                            +LA++FGL++      + ++KNLR+C DCH   K +SA+ GRE
Sbjct: 639 DEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGRE 698

Query: 586 IIVRDNSRFHHFKNGTCSCNDFW 608
           IIVRDN RFH FK+G CSC D+W
Sbjct: 699 IIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 219/485 (45%), Gaps = 82/485 (16%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GK +H   +K       ++ +  VN+Y+K G +  AR  F    + +V S+N ++  YA+
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK------------- 166
           +  + +A +LFDE+P  D  ++  L+ G A   +  AA  +F +M K             
Sbjct: 87  DSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGL 146

Query: 167 -------------------------KSSVSWNAMINGYMKSGKINLARQLFGQMPG-RNL 200
                                     SSV+ NA +  Y K G +  A  +F  M   R+ 
Sbjct: 147 IAACCDRVDLIKQLHCFSVSGGFDSYSSVN-NAFVTYYSKGGLLREAVSVFYGMDELRDE 205

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           +SWNSMI  Y  +    +A+ L++ ++ +G      T+ S L+A++ L  L  GR  H  
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIE---SALAVFKAIANKKLGHWTAIIVGLGMH-GL 316
           ++K  F  +  +G+ LI+ YSKCG  +    +  VF+ I +  L  W  +I G  M+  L
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEEL 325

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
           +++A++ F +M+RIG +P   +F+ V +ACS+     +  +   + I  +     +    
Sbjct: 326 SEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNN 385

Query: 377 CLVDILCRAGHLQQAKNIIESMP----------------------------------MRP 402
            L+ +  ++G+LQ A+ + + MP                                  + P
Sbjct: 386 ALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAP 445

Query: 403 NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA---DPDATGCYTLLSNIYAAAGKWDKVSH 459
           NK+ ++++LS+  + G ++ G+   + + E    +P+A   Y+ + ++   AGK ++   
Sbjct: 446 NKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEH-YSCMIDLLGRAGKLEEAER 504

Query: 460 VREMM 464
             + M
Sbjct: 505 FIDAM 509


>AT3G47530.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:17517382-17519157 REVERSE
           LENGTH=591
          Length = 591

 Score =  357 bits (916), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 200/587 (34%), Positives = 317/587 (54%), Gaps = 24/587 (4%)

Query: 40  DGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGF-----GFDKFVQSSLVNMYAKWGEMGL 94
           D   L  ++    +LH     +QIH  +L+         F  F+    +++  +  ++  
Sbjct: 11  DDHLLSLIVSSTGKLHL----RQIHALLLRTSLIRNSDVFHHFLSRLALSLIPR--DINY 64

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLA-KC-- 151
           + +VF + ++  +   N++I  ++ +       +LF  +    +     L    A KC  
Sbjct: 65  SCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCI 124

Query: 152 ------GKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNS 205
                 G ++   ++F       S+    +++ Y        A ++F ++P R+ +SWN 
Sbjct: 125 KSGDLLGGLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNV 184

Query: 206 MISGYQLNGRFLEAMELFEVLLKE---GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           + S Y  N R  + + LF+ +  +    + P  VT L AL A + L  L  G+ +H F+ 
Sbjct: 185 LFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFID 244

Query: 263 KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALE 322
           ++       L  +L+ MYS+CGS++ A  VF  +  + +  WTA+I GL M+G   +A+E
Sbjct: 245 ENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIE 304

Query: 323 LFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN-EYKIVPTVEHYGCLVDI 381
            F EM + G+ P   T  G+L+ACSH GLV EG   FD M + E+KI P + HYGC+VD+
Sbjct: 305 AFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDL 364

Query: 382 LCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCY 441
           L RA  L +A ++I+SM M+P+  IW +LL + R HG++E+GE    +LIE   +  G Y
Sbjct: 365 LGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAEEAGDY 424

Query: 442 TLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIY 501
            LL N Y+  GKW+KV+ +R +MKE+ +    GCS +E +G ++ FIV D SHP+ + IY
Sbjct: 425 VLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIY 484

Query: 502 AKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRI 561
             L E++++LK+AG+V + +  L                  +LAI+FG+L     T IR+
Sbjct: 485 KMLAEINQQLKIAGYVAEITSELHNLESEEEKGYALRYHSEKLAIAFGILVTPPGTTIRV 544

Query: 562 MKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            KNLR C DCH   K +S +Y R +IVRD SRFHHFK G+CSCNDFW
Sbjct: 545 TKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCNDFW 591



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQM---LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           K   VSWN++ SCY+ N R+ D L+LF +M   +   + PDG T    ++ C+ L A+  
Sbjct: 176 KRDTVSWNVLFSCYLRNKRTRDVLVLFDKMKNDVDGCVKPDGVTCLLALQACANLGALDF 235

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GKQ+H ++ + G      + ++LV+MY++ G M  A +VF  M +R+VVSW +LI G A 
Sbjct: 236 GKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAM 295

Query: 120 NGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQM 164
           NG  + A++ F+EM     S +  T T LL   +  G V      FD+M
Sbjct: 296 NGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRM 344


>AT5G65570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26203968-26206184 FORWARD
           LENGTH=738
          Length = 738

 Score =  356 bits (913), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 205/618 (33%), Positives = 345/618 (55%), Gaps = 14/618 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+WN +I+  + + RS +A+ ++R M+ +++LPD +TL  V K  S L   +E 
Sbjct: 125 MSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSLEKEA 184

Query: 61  KQIHGYVLKIGFGFDK-FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           ++ HG  + +G      FV S+LV+MY K+G+   A+ V D++ ++DVV   +LI GY++
Sbjct: 185 QRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQ 244

Query: 120 NGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVS 171
            G    A+K F  M       + +T+ ++L        +   + +   M K     +  S
Sbjct: 245 KGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALAS 304

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
             +++  Y++   ++ + ++F  +   N +SW S+ISG   NGR   A+  F  ++++ +
Sbjct: 305 QTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSI 364

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P+  T+ SAL   S LA+   GR IH  + K+ FD D   G+ LI++Y KCG  + A  
Sbjct: 365 KPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARL 424

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF  ++   +     +I     +G   +AL+LF  M  +G++P+ +T + VL AC++  L
Sbjct: 425 VFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSRL 484

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           V+EG + FD    + KI+ T +HY C+VD+L RAG L++A+ ++ +  + P+ V+W +LL
Sbjct: 485 VEEGCELFDSFRKD-KIMLTNDHYACMVDLLGRAGRLEEAE-MLTTEVINPDLVLWRTLL 542

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           S+ + H  +E+ E     ++E +P   G   L+SN+YA+ GKW++V  ++  MK+  + K
Sbjct: 543 SACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKK 602

Query: 472 DAGCSIVEHRGKLNRFIVGDK-SHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           +   S VE   + + F+ GD  SHP ++ I   L E+ KK K  G+V D S V       
Sbjct: 603 NPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVF-QDMEE 661

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       +LAI+F +        IRI+KNLRVC DCH+  K++S +  REII RD
Sbjct: 662 TAKERSLHQHSEKLAIAFAVWR-NVGGSIRILKNLRVCVDCHSWIKIVSRVMKREIICRD 720

Query: 591 NSRFHHFKNGTCSCNDFW 608
           + RFHHF++G+CSC D+W
Sbjct: 721 SKRFHHFRDGSCSCGDYW 738



 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 167/331 (50%), Gaps = 10/331 (3%)

Query: 36  DLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLA 95
           D L        +++ C    ++   K I  ++LK GF  +    S LV+   K G++  A
Sbjct: 60  DTLTTTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAE-ISGSKLVDASLKCGDIDYA 118

Query: 96  RKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKC 151
           R+VFD M +R +V+WNSLI    ++   + A++++  M +     D +T +++    +  
Sbjct: 119 RQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDL 178

Query: 152 G-KVEAARE----VFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSM 206
             + EA R     V   +   +    +A+++ Y+K GK   A+ +  ++  ++++   ++
Sbjct: 179 SLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITAL 238

Query: 207 ISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF 266
           I GY   G   EA++ F+ +L E + P+  T  S L +   L  +GNG+ IH  MVK  F
Sbjct: 239 IVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGF 298

Query: 267 DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFME 326
           +      TSL+ MY +C  ++ +L VFK I       WT++I GL  +G  + AL  F +
Sbjct: 299 ESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRK 358

Query: 327 MRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           M R  +KP++ T    L  CS+  + +EG +
Sbjct: 359 MMRDSIKPNSFTLSSALRGCSNLAMFEEGRQ 389



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 125/257 (48%), Gaps = 3/257 (1%)

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
           + +S + +++  +K G I+ ARQ+F  M  R++++WNS+I+    + R  EA+E++ +++
Sbjct: 98  AEISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMI 157

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSI 286
              ++P   T+ S   A S L++    +  H   V    ++  V +G++L++MY K G  
Sbjct: 158 TNNVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKT 217

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
             A  V   +  K +   TA+IVG    G   +A++ F  M    ++P+  T+  VL +C
Sbjct: 218 REAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISC 277

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
            +   +  G     +M+        +     L+ +  R   +  +  + + +   PN+V 
Sbjct: 278 GNLKDIGNGKLIHGLMVKS-GFESALASQTSLLTMYLRCSLVDDSLRVFKCIEY-PNQVS 335

Query: 407 WMSLLSSSRNHGNLEIG 423
           W SL+S    +G  E+ 
Sbjct: 336 WTSLISGLVQNGREEMA 352


>AT3G14330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4779688-4782451 REVERSE
           LENGTH=710
          Length = 710

 Score =  353 bits (906), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/541 (35%), Positives = 302/541 (55%), Gaps = 13/541 (2%)

Query: 80  SSLVNMYAKWGEMGLARKVFDKMVDRDVVS---WNSLIDGYARNGNVEVAMKLFDEM--- 133
           S L+ +++    + LARK+FD + D  +++   W ++  GY+RNG+   A+ ++ +M   
Sbjct: 171 SKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCS 230

Query: 134 -PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLA 188
                 F+ +  L        +   R +  Q+ K+      V +N ++  YM+SG  + A
Sbjct: 231 FIEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDA 290

Query: 189 RQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGL 248
           R++F  M  RN+++WNS+IS      R  E   LF  + +E +  S  T+ + L A S +
Sbjct: 291 RKVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRV 350

Query: 249 AVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAII 308
           A L  G+ IH+ ++K     D  L  SL++MY KCG +E +  VF  +  K L  W  ++
Sbjct: 351 AALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIML 410

Query: 309 VGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKI 368
               ++G  ++ + LF  M   G+ P  ITF+ +L+ CS  GL + G   F+ M  E+++
Sbjct: 411 NCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRV 470

Query: 369 VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAH 428
            P +EHY CLVDIL RAG +++A  +IE+MP +P+  IW SLL+S R HGN+ +GE AA 
Sbjct: 471 SPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAK 530

Query: 429 NLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFI 488
            L   +P   G Y ++SNIYA A  WD V  +REMMK+RGV K+AGCS V+ + K+  F+
Sbjct: 531 ELFVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFV 590

Query: 489 VGDKSHPQTKAIYAKL-REMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAIS 547
            G     +    Y K+  E+ + ++ +G+ P+TS VL                  RLA +
Sbjct: 591 AGGGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVL-HDVDEETKANWVCGHSERLATT 649

Query: 548 FGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDF 607
           + L++     PIRI KNLRVC DCH+  K++S +  R I++RD  RFHHF +G CSC D+
Sbjct: 650 YSLIHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDY 709

Query: 608 W 608
           W
Sbjct: 710 W 710



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 179/370 (48%), Gaps = 23/370 (6%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           W  +   Y  N    DAL+++  ML   + P  F++   +K C  L  ++ G+ IH  ++
Sbjct: 204 WAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKDLRVGRGIHAQIV 263

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
           K     D+ V + L+ +Y + G    ARKVFD M +R+VV+WNSLI   ++   V     
Sbjct: 264 KRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVLSKKVRVHEMFN 323

Query: 129 LFDEMPSR-DAFTWTALLDGLAKCGKVEA---AREVFDQMPK---KSSVS-WNAMINGYM 180
           LF +M      F+W  L   L  C +V A    +E+  Q+ K   K  V   N++++ Y 
Sbjct: 324 LFRKMQEEMIGFSWATLTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYG 383

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           K G++  +R++F  M  ++L SWN M++ Y +NG   E + LFE +++ G+ P  +T ++
Sbjct: 384 KCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVA 443

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAIAN 298
            LS  S   +   G  +   M K  F +   L     L+++  + G I+ A+ V + +  
Sbjct: 444 LLSGCSDTGLTEYGLSLFERM-KTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPF 502

Query: 299 KKLGH-WTAIIVGLGMHGLAD----QALELFMEMRRIGMKPHAI-TFIGVLNACSHKGLV 352
           K     W +++    +HG        A ELF+      ++PH    ++ V N  +   + 
Sbjct: 503 KPSASIWGSLLNSCRLHGNVSVGEIAAKELFV------LEPHNPGNYVMVSNIYADAKMW 556

Query: 353 DEGNKCFDMM 362
           D  +K  +MM
Sbjct: 557 DNVDKIREMM 566



 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/237 (32%), Positives = 128/237 (54%), Gaps = 14/237 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+WN +IS      R ++   LFR+M    +     TL  ++  CSR+ A+  G
Sbjct: 297 MSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAALLTG 356

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IH  +LK     D  + +SL++MY K GE+  +R+VFD M+ +D+ SWN +++ YA N
Sbjct: 357 KEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAIN 416

Query: 121 GNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           GN+E  + LF+ M     + D  T+ ALL G +  G  E    +F++M  +  VS     
Sbjct: 417 GNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEH 476

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLIS-WNSMISGYQLNGRF----LEAMELF 223
           +  +++   ++GKI  A ++   MP +   S W S+++  +L+G      + A ELF
Sbjct: 477 YACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELF 533


>AT4G18840.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10338719-10340356 REVERSE
           LENGTH=545
          Length = 545

 Score =  352 bits (902), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 172/467 (36%), Positives = 273/467 (58%), Gaps = 32/467 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P   + N +I  Y ++     AL +FR+ML   + PD ++   V+K C+     +EG+QI
Sbjct: 103 PNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQI 162

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           HG  +K G   D FV+++LVN+                               Y R+G  
Sbjct: 163 HGLFIKSGLVTDVFVENTLVNV-------------------------------YGRSGYF 191

Query: 124 EVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSG 183
           E+A K+ D MP RDA +W +LL    + G V+ AR +FD+M +++  SWN MI+GY  +G
Sbjct: 192 EIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAG 251

Query: 184 KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL-MPSHVTILSAL 242
            +  A+++F  MP R+++SWN+M++ Y   G + E +E+F  +L +    P   T++S L
Sbjct: 252 LVKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVL 311

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG 302
           SA + L  L  G W+H ++ KH  +++G L T+L++MYSKCG I+ AL VF+A + + + 
Sbjct: 312 SACASLGSLSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVS 371

Query: 303 HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM 362
            W +II  L +HGL   ALE+F EM   G KP+ ITFIGVL+AC+H G++D+  K F+MM
Sbjct: 372 TWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMM 431

Query: 363 INEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEI 422
            + Y++ PT+EHYGC+VD+L R G +++A+ ++  +P     ++  SLL + +  G LE 
Sbjct: 432 SSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQ 491

Query: 423 GEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
            E  A+ L+E +   +  Y  +SN+YA+ G+W+KV   R  M+   V
Sbjct: 492 AERIANRLLELNLRDSSGYAQMSNLYASDGRWEKVIDGRRNMRAERV 538



 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 119/291 (40%), Gaps = 16/291 (5%)

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA 244
           ++ A  +  ++   N  + NS+I  Y  +     A+ +F  +L   + P   +    L A
Sbjct: 90  VSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKA 149

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHW 304
            +       GR IH   +K     D  +  +L+ +Y + G  E A  V   +  +    W
Sbjct: 150 CAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSW 209

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM-- 362
            +++      GL D+A  LF EM    ++       G   A    GLV E  + FD M  
Sbjct: 210 NSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAA----GLVKEAKEVFDSMPV 265

Query: 363 ---INEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
              ++   +V    H GC  ++      L+    +++    +P+    +S+LS+  + G+
Sbjct: 266 RDVVSWNAMVTAYAHVGCYNEV------LEVFNKMLDDSTEKPDGFTLVSVLSACASLGS 319

Query: 420 LEIGEYAAHNLIEADPDATG-CYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           L  GE+    + +   +  G   T L ++Y+  GK DK   V     +R V
Sbjct: 320 LSQGEWVHVYIDKHGIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDV 370


>AT5G39680.1 | Symbols: EMB2744 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:15884236-15886368 REVERSE
           LENGTH=710
          Length = 710

 Score =  350 bits (899), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/618 (31%), Positives = 331/618 (53%), Gaps = 12/618 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +VSW  ++  Y ++    + L LF+ M    +  P+ F    V K CS    ++E
Sbjct: 95  MPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEE 154

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GKQ HG  LK G    +FV+++LV MY+     G A +V D +   D+  ++S + GY  
Sbjct: 155 GKQFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLE 214

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTAL-----LDGLAKCGKVEAAREVFDQMPK----KSSV 170
            G  +  + +  +  + D F W  L     L   +    +  A +V  +M +        
Sbjct: 215 CGAFKEGLDVLRKTANED-FVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVE 273

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +  A+IN Y K GK+  A+++F     +N+    +++  Y  +  F EA+ LF  +  + 
Sbjct: 274 ACGALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKE 333

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P+  T    L++++ L++L  G  +H  ++K  +    ++G +L+ MY+K GSIE A 
Sbjct: 334 VPPNEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDAR 393

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
             F  +  + +  W  +I G   HGL  +ALE F  M   G  P+ ITFIGVL ACSH G
Sbjct: 394 KAFSGMTFRDIVTWNTMISGCSHHGLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIG 453

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            V++G   F+ ++ ++ + P ++HY C+V +L +AG  + A++ + + P+  + V W +L
Sbjct: 454 FVEQGLHYFNQLMKKFDVQPDIQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTL 513

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L++     N  +G+  A   IE  P+ +G Y LLSNI+A + +W+ V+ VR +M  RGV 
Sbjct: 514 LNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVK 573

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXX 530
           K+ G S +  R + + F+  D  HP+   IYAK++E+  K+K  G+ PD +         
Sbjct: 574 KEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAF-HDVDE 632

Query: 531 XXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRD 590
                       +LA+++GL+    ++P+ + KN+R+C+DCH+  KL+S I  R I++RD
Sbjct: 633 EQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRD 692

Query: 591 NSRFHHFKNGTCSCNDFW 608
           ++RFHHF +G CSC D+W
Sbjct: 693 SNRFHHFLDGQCSCCDYW 710



 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 184/385 (47%), Gaps = 16/385 (4%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVL---KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV 103
           ++K C+    ++ G+ IH +++   +     D +  +SL+N+Y K  E   ARK+FD M 
Sbjct: 37  LLKVCANSSYLRIGESIHAHLIVTNQSSRAEDAYQINSLINLYVKCRETVRARKLFDLMP 96

Query: 104 DRDVVSWNSLIDGYARNGNVEVAMKLFDEM----PSR-DAFTWTALLDGLAKCGKVEAAR 158
           +R+VVSW +++ GY  +G     +KLF  M     SR + F  T +    +  G++E  +
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGK 156

Query: 159 EVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
           +      K   +S     N ++  Y        A ++   +P  +L  ++S +SGY   G
Sbjct: 157 QFHGCFLKYGLISHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECG 216

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
            F E +++      E  + +++T LS+L   S L  L     +HS MV+  F+ +     
Sbjct: 217 AFKEGLDVLRKTANEDFVWNNLTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACG 276

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           +LI MY KCG +  A  VF     + +   T I+         ++AL LF +M    + P
Sbjct: 277 ALINMYGKCGKVLYAQRVFDDTHAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPP 336

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKN 393
           +  TF  +LN+ +   L+ +G+    +++   Y+    V +   LV++  ++G ++ A+ 
Sbjct: 337 NEYTFAILLNSIAELSLLKQGDLLHGLVLKSGYRNHVMVGN--ALVNMYAKSGSIEDARK 394

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHG 418
               M  R + V W +++S   +HG
Sbjct: 395 AFSGMTFR-DIVTWNTMISGCSHHG 418


>AT1G06150.1 | Symbols: EMB1444 | basic helix-loop-helix (bHLH)
            DNA-binding superfamily protein | chr1:1867129-1873194
            REVERSE LENGTH=1322
          Length = 1322

 Score =  341 bits (875), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 183/524 (34%), Positives = 291/524 (55%), Gaps = 34/524 (6%)

Query: 1    MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
            M +P +  +N +   +V       +L L+ +ML   + P  +T   ++K  S   A + G
Sbjct: 831  MQEPNVFVYNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASS--FASRFG 888

Query: 61   KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            + +  ++ K GFGF   +Q++L                               ID Y+  
Sbjct: 889  ESLQAHIWKFGFGFHVKIQTTL-------------------------------IDFYSAT 917

Query: 121  GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYM 180
            G +  A K+FDEMP RD   WT ++    +   +++A  + +QM +K+  + N +INGYM
Sbjct: 918  GRIREARKVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYM 977

Query: 181  KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
              G +  A  LF QMP +++ISW +MI GY  N R+ EA+ +F  +++EG++P  VT+ +
Sbjct: 978  GLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMST 1037

Query: 241  ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
             +SA + L VL  G+ +H + +++ F LD  +G++L++MYSKCGS+E AL VF  +  K 
Sbjct: 1038 VISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKN 1097

Query: 301  LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
            L  W +II GL  HG A +AL++F +M    +KP+A+TF+ V  AC+H GLVDEG + + 
Sbjct: 1098 LFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYR 1157

Query: 361  MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
             MI++Y IV  VEHYG +V +  +AG + +A  +I +M   PN VIW +LL   R H NL
Sbjct: 1158 SMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNL 1217

Query: 421  EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD-AGCSIVE 479
             I E A + L+  +P  +G Y LL ++YA   +W  V+ +R  M+E G+ K   G S + 
Sbjct: 1218 VIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIR 1277

Query: 480  HRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQV 523
               + + F   DKSH  +  +   L E+  ++ LAG+V +T  V
Sbjct: 1278 IDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGYVQETENV 1321


>AT5G50990.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:20739453-20741281 FORWARD
           LENGTH=534
          Length = 534

 Score =  341 bits (874), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 174/437 (39%), Positives = 264/437 (60%), Gaps = 5/437 (1%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK-EGL 231
           N +I   MK G+  LA+++      +N+I+WN MI GY  N ++ EA++  + +L    +
Sbjct: 102 NLIIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDI 161

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P+  +  S+L+A + L  L + +W+HS M+    +L+ +L ++L+++Y+KCG I ++  
Sbjct: 162 KPNKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSRE 221

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF ++    +  W A+I G   HGLA +A+ +F EM    + P +ITF+G+L  CSH GL
Sbjct: 222 VFYSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGL 281

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           ++EG + F +M   + I P +EHYG +VD+L RAG +++A  +IESMP+ P+ VIW SLL
Sbjct: 282 LEEGKEYFGLMSRRFSIQPKLEHYGAMVDLLGRAGRVKEAYELIESMPIEPDVVIWRSLL 341

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           SSSR + N E+GE A  NL +A    +G Y LLSNIY++  KW+    VRE+M + G+ K
Sbjct: 342 SSSRTYKNPELGEIAIQNLSKAK---SGDYVLLSNIYSSTKKWESAQKVRELMSKEGIRK 398

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXX 531
             G S +E  G ++RF  GD SH +TKAIY  L  + +K K  G V DT  VL       
Sbjct: 399 AKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVL-MDVSEE 457

Query: 532 XXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDN 591
                      +LA+++ +L     T IRI KN+R+C+DCH   K +S +  R II+RD 
Sbjct: 458 EKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDR 517

Query: 592 SRFHHFKNGTCSCNDFW 608
            RFH F++G CSC D+W
Sbjct: 518 IRFHRFEDGLCSCRDYW 534



 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 128/234 (54%), Gaps = 15/234 (6%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           +++WNL+I  YV N +  +AL   + ML   D+ P+ F+    +  C+RL  +   K +H
Sbjct: 129 VITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKPNKFSFASSLAACARLGDLHHAKWVH 188

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
             ++  G   +  + S+LV++YAK G++G +R+VF  +   DV  WN++I G+A +G   
Sbjct: 189 SLMIDSGIELNAILSSALVDVYAKCGDIGTSREVFYSVKRNDVSIWNAMITGFATHGLAT 248

Query: 125 VAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAM 175
            A+++F EM     S D+ T+  LL   + CG +E  +E F  M ++ S+      + AM
Sbjct: 249 EAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLEEGKEYFGLMSRRFSIQPKLEHYGAM 308

Query: 176 INGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK 228
           ++   ++G++  A +L   MP   +++ W S++S    + R  +  EL E+ ++
Sbjct: 309 VDLLGRAGRVKEAYELIESMPIEPDVVIWRSLLS----SSRTYKNPELGEIAIQ 358



 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 114/226 (50%), Gaps = 12/226 (5%)

Query: 82  LVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS-----R 136
           ++    K GE GLA+KV     D++V++WN +I GY RN   E A+K    M S      
Sbjct: 104 IIESLMKIGESGLAKKVLRNASDQNVITWNLMIGGYVRNVQYEEALKALKNMLSFTDIKP 163

Query: 137 DAFTWTALLDGLAKCGKVEAAREV----FDQMPKKSSVSWNAMINGYMKSGKINLARQLF 192
           + F++ + L   A+ G +  A+ V     D   + +++  +A+++ Y K G I  +R++F
Sbjct: 164 NKFSFASSLAACARLGDLHHAKWVHSLMIDSGIELNAILSSALVDVYAKCGDIGTSREVF 223

Query: 193 GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG 252
             +   ++  WN+MI+G+  +G   EA+ +F  +  E + P  +T L  L+  S   +L 
Sbjct: 224 YSVKRNDVSIWNAMITGFATHGLATEAIRVFSEMEAEHVSPDSITFLGLLTTCSHCGLLE 283

Query: 253 NGRWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAI 296
            G+     M +  F +   L    +++++  + G ++ A  + +++
Sbjct: 284 EGKEYFGLMSRR-FSIQPKLEHYGAMVDLLGRAGRVKEAYELIESM 328


>AT4G38010.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:17859582-17861261 REVERSE
           LENGTH=559
          Length = 559

 Score =  340 bits (873), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/487 (36%), Positives = 292/487 (59%), Gaps = 8/487 (1%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           S+N ++S Y    +    +  ++  + +   PD FT P V K C +   ++EGKQIHG V
Sbjct: 73  SYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREGKQIHGIV 132

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
            K+GF  D +VQ+SLV+ Y   GE   A KVF +M  RDVVSW  +I G+ R G  + A+
Sbjct: 133 TKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRTGLYKEAL 192

Query: 128 KLFDEMPSRDAF-TWTALLDGLAKCGKVEAAREVFDQMPKKSSV----SWNAMINGYMKS 182
             F +M       T+  +L    + G +   + +   + K++S+    + NA+I+ Y+K 
Sbjct: 193 DTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNALIDMYVKC 252

Query: 183 GKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL-LKEGLMPSHVTILSA 241
            +++ A ++FG++  ++ +SWNSMISG     R  EA++LF ++    G+ P    + S 
Sbjct: 253 EQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSV 312

Query: 242 LSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL 301
           LSA + L  + +GRW+H +++      D  +GT++++MY+KCG IE+AL +F  I +K +
Sbjct: 313 LSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNV 372

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCF-D 360
             W A++ GL +HG   ++L  F EM ++G KP+ +TF+  LNAC H GLVDEG + F  
Sbjct: 373 FTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHK 432

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
           M   EY + P +EHYGC++D+LCRAG L +A  ++++MP++P+  I  ++LS+ +N G L
Sbjct: 433 MKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTL 492

Query: 421 -EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVE 479
            E+ +    + ++ + + +G Y LLSNI+AA  +WD V+ +R +MK +G+ K  G S +E
Sbjct: 493 MELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552

Query: 480 HRGKLNR 486
               L++
Sbjct: 553 KFMTLDQ 559



 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 144/296 (48%), Gaps = 22/296 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQM-LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           + K   VSWN +IS  VH  RS +A+ LF  M     + PDG  L  V+  C+ L AV  
Sbjct: 265 LEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDH 324

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+ +H Y+L  G  +D  + +++V+MYAK G +  A ++F+ +  ++V +WN+L+ G A 
Sbjct: 325 GRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSKNVFTWNALLGGLAI 384

Query: 120 NGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS------ 169
           +G+   +++ F+EM       +  T+ A L+     G V+  R  F +M  +        
Sbjct: 385 HGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKL 444

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLE-AMELFEVLL 227
             +  MI+   ++G ++ A +L   MP + ++    +++S  +  G  +E   E+ +  L
Sbjct: 445 EHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFL 504

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG---VLGTSLIEMY 280
                 S V +L  LS +       N RW     ++    + G   V G+S IE +
Sbjct: 505 DIEFEDSGVYVL--LSNIFA----ANRRWDDVARIRRLMKVKGISKVPGSSYIEKF 554


>AT3G04750.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1301391-1303376 REVERSE
           LENGTH=661
          Length = 661

 Score =  339 bits (870), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 200/556 (35%), Positives = 300/556 (53%), Gaps = 53/556 (9%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +  +N +IS    +   N+   L+  M+ H + PD  T   ++K  S L  V   KQI
Sbjct: 98  PNVFVYNTMISAV--SSSKNECFGLYSSMIRHRVSPDRQTFLYLMKASSFLSEV---KQI 152

Query: 64  HGYVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           H +++  G      ++ +SLV  Y + G  G+A KVF +M   DV S+N +I GYA+ G 
Sbjct: 153 HCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGF 212

Query: 123 VEVAMKLFDEMPSR----DAFT----------------------W--------------- 141
              A+KL+ +M S     D +T                      W               
Sbjct: 213 SLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILS 272

Query: 142 TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI 201
            ALLD   KC +   A+  FD M KK   SWN M+ G+++ G +  A+ +F QMP R+L+
Sbjct: 273 NALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLV 332

Query: 202 SWNSMISGYQLNG---RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           SWNS++ GY   G   R +  +  +E+ + E + P  VT++S +S  +    L +GRW+H
Sbjct: 333 SWNSLLFGYSKKGCDQRTVREL-FYEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVH 391

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
             +++     D  L ++LI+MY KCG IE A  VFK    K +  WT++I GL  HG   
Sbjct: 392 GLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQ 451

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL 378
           QAL+LF  M+  G+ P+ +T + VL ACSH GLV+EG   F+ M +++   P  EHYG L
Sbjct: 452 QALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSL 511

Query: 379 VDILCRAGHLQQAKNIIE-SMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDA 437
           VD+LCRAG +++AK+I++  MPMRP++ +W S+LS+ R   ++E  E A   L++ +P+ 
Sbjct: 512 VDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTELLKLEPEK 571

Query: 438 TGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDK-SHPQ 496
            G Y LLSNIYA  G+W      RE M+ RGV K AG S V     L+RF+  +K +HP+
Sbjct: 572 EGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVAAEKQNHPR 631

Query: 497 TKAIYAKLREMSKKLK 512
              I   L+ +  ++K
Sbjct: 632 WTEIKRILQHLYNEMK 647



 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 176/345 (51%), Gaps = 48/345 (13%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M  P + S+N++I  Y     S +AL L+ +M+   + PD +T+  ++  C  L  ++ G
Sbjct: 192 MPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLG 251

Query: 61  KQIHGYVLKIG--FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           K +HG++ + G  +  +  + ++L++MY K  E GLA++ FD M  +D+ SWN+++ G+ 
Sbjct: 252 KGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFV 311

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCG-KVEAAREVFDQM-------PKKSSV 170
           R G++E A  +FD+MP RD  +W +LL G +K G      RE+F +M       P + ++
Sbjct: 312 RLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTM 371

Query: 171 ----------------SW-----------------NAMINGYMKSGKINLARQLFGQMPG 197
                            W                 +A+I+ Y K G I  A  +F     
Sbjct: 372 VSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATE 431

Query: 198 RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWI 257
           +++  W SMI+G   +G   +A++LF  + +EG+ P++VT+L+ L+A S   ++  G  +
Sbjct: 432 KDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHV 491

Query: 258 HSFMV-KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL 301
            + M  K  FD +     SL+++  + G +E A    K I  KK+
Sbjct: 492 FNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEA----KDIVQKKM 532



 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 137/348 (39%), Gaps = 64/348 (18%)

Query: 185 INLARQLFGQM-PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALS 243
           ++LA+ LF    P  N+  +N+MIS    +    E   L+  +++  + P   T L  + 
Sbjct: 84  LDLAKLLFLNFTPNPNVFVYNTMISAVSSSKN--ECFGLYSSMIRHRVSPDRQTFLYLMK 141

Query: 244 AVSGLAVLGNGRWIHS-FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG 302
           A S L+ +   + IH   +V  C  L   L  SL++ Y + G+   A  VF  + +  + 
Sbjct: 142 ASSFLSEV---KQIHCHIIVSGCLSLGNYLWNSLVKFYMELGNFGVAEKVFARMPHPDVS 198

Query: 303 HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH-------------- 348
            +  +IVG    G + +AL+L+ +M   G++P   T + +L  C H              
Sbjct: 199 SFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWI 258

Query: 349 --------------KGLVDEGNKC---------FDMMINEYKIVPTVEHYGCLVDILCRA 385
                           L+D   KC         FD M  +      +  +  +V    R 
Sbjct: 259 ERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKK-----DMRSWNTMVVGFVRL 313

Query: 386 GHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG--NLEIGE--YAAHNLIEADPDATGCY 441
           G ++ A+ + + MP R + V W SLL      G     + E  Y    + +  PD     
Sbjct: 314 GDMEAAQAVFDQMPKR-DLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMV 372

Query: 442 TLLS----NIYAAAGKWDKVSHVREMMKERGVLKDA------GCSIVE 479
           +L+S    N   + G+W     +R  +K    L  A       C I+E
Sbjct: 373 SLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIE 420


>AT1G34160.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:12441393-12443225 FORWARD
           LENGTH=581
          Length = 581

 Score =  338 bits (868), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 315/569 (55%), Gaps = 28/569 (4%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYA--KWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           KQ+  + L  G     F++S L+   A   +G++  A ++F  +       WN++I G+A
Sbjct: 20  KQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIFRYIPKPLTNDWNAIIRGFA 79

Query: 119 RNGNVEVAMKLFDEMPSR----------DAFTWTALLDGLAKCGKVEAAREVFDQMPKK- 167
            + +  +A   +  M  +          DA T +  L   A+     A  ++  Q+ ++ 
Sbjct: 80  GSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALCSSAMDQLHCQINRRG 139

Query: 168 ---SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFE 224
               S+    +++ Y K+G +  A +LF +MP R++ SWN++I+G     R  EAMEL++
Sbjct: 140 LSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYK 199

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL-GTSLIEMYSKC 283
            +  EG+  S VT+++AL A S L  +  G  I      H +  D V+   + I+MYSKC
Sbjct: 200 RMETEGIRRSEVTVVAALGACSHLGDVKEGENIF-----HGYSNDNVIVSNAAIDMYSKC 254

Query: 284 GSIESALAVFKAIANKK-LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGV 342
           G ++ A  VF+    KK +  W  +I G  +HG A +ALE+F ++   G+KP  ++++  
Sbjct: 255 GFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAA 314

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
           L AC H GLV+ G   F+ M  +  +   ++HYGC+VD+L RAG L++A +II SM M P
Sbjct: 315 LTACRHAGLVEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIP 373

Query: 403 NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVRE 462
           + V+W SLL +S  + ++E+ E A+  + E   +  G + LLSN+YAA G+W  V  VR+
Sbjct: 374 DPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRD 433

Query: 463 MMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQ 522
            M+ + V K  G S +E +G ++ F   DKSH Q + IY K+ E+  K++  G+V  T  
Sbjct: 434 DMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGL 493

Query: 523 VLXXXXXXXXXXXXXXXXXXRLAISFGLLNM---ERRTPIRIMKNLRVCNDCHAVTKLLS 579
           VL                  +LA+++GL+ M   +  +P+R++ NLR+C DCH V K +S
Sbjct: 494 VL-HDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHIS 552

Query: 580 AIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            IY REIIVRD  RFH FK+G+CSC DFW
Sbjct: 553 KIYKREIIVRDRVRFHRFKDGSCSCRDFW 581



 Score =  126 bits (316), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 130/269 (48%), Gaps = 18/269 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLP------DGFTLPCVIKGCSRLHA 56
           KP    WN II  +  +   + A   +R ML            D  T    +K C+R   
Sbjct: 65  KPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKACARALC 124

Query: 57  VQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
                Q+H  + + G   D  + ++L++ Y+K G++  A K+FD+M  RDV SWN+LI G
Sbjct: 125 SSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAG 184

Query: 117 YARNGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW 172
                    AM+L+  M +    R   T  A L   +  G V+    +F      + +  
Sbjct: 185 LVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHGYSNDNVIVS 244

Query: 173 NAMINGYMKSGKINLARQLFGQMPG-RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
           NA I+ Y K G ++ A Q+F Q  G +++++WN+MI+G+ ++G    A+E+F+ L   G+
Sbjct: 245 NAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGI 304

Query: 232 MPSHVTILSALSAVS-------GLAVLGN 253
            P  V+ L+AL+A         GL+V  N
Sbjct: 305 KPDDVSYLAALTACRHAGLVEYGLSVFNN 333


>AT1G50270.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:18622044-18623834 FORWARD
           LENGTH=596
          Length = 596

 Score =  338 bits (867), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 290/507 (57%), Gaps = 11/507 (2%)

Query: 25  ALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVN 84
           + L +R M  + ++P   T P ++K   +L       Q H +++K G   D FV++SL++
Sbjct: 88  SFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-SNPFQFHAHIVKFGLDSDPFVRNSLIS 146

Query: 85  MYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFT 140
            Y+  G    A ++FD   D+DVV+W ++IDG+ RNG+   AM  F EM     + +  T
Sbjct: 147 GYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMT 206

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AMINGYMKSGKINLARQLFGQM 195
             ++L    K   V   R V     +   V  +     ++++ Y K    + A+++F +M
Sbjct: 207 VVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEM 266

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
           P RN+++W ++I+GY  +  F + M +FE +LK  + P+  T+ S LSA + +  L  GR
Sbjct: 267 PSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGR 326

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHG 315
            +H +M+K+  +++   GT+LI++Y KCG +E A+ VF+ +  K +  WTA+I G   HG
Sbjct: 327 RVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHG 386

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY 375
            A  A +LF  M    + P+ +TF+ VL+AC+H GLV+EG + F  M   + + P  +HY
Sbjct: 387 YARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHY 446

Query: 376 GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP 435
            C+VD+  R G L++AK +IE MPM P  V+W +L  S   H + E+G+YAA  +I+  P
Sbjct: 447 ACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKLQP 506

Query: 436 DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHP 495
             +G YTLL+N+Y+ +  WD+V+ VR+ MK++ V+K  G S +E +GKL  FI  D   P
Sbjct: 507 SHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKP 566

Query: 496 -QTKAIYAKLREMSKKLKLAGHVPDTS 521
            ++  +Y  L  +  +++L   + D +
Sbjct: 567 LESDDLYKTLDTVGVQMRLPDELEDVT 593



 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 175/341 (51%), Gaps = 15/341 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V+W  +I  +V N  +++A++ F +M    +  +  T+  V+K   ++  V+ G+ +HG
Sbjct: 169 VVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHG 228

Query: 66  YVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
             L+ G    D F+ SSLV+MY K      A+KVFD+M  R+VV+W +LI GY ++   +
Sbjct: 229 LYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFD 288

Query: 125 VAMKLFDEMPSRDAF----TWTALLDGLAKCGKVEAAREVFDQMPKKS----SVSWNAMI 176
             M +F+EM   D      T +++L   A  G +   R V   M K S    + +   +I
Sbjct: 289 KGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLI 348

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           + Y+K G +  A  +F ++  +N+ +W +MI+G+  +G   +A +LF  +L   + P+ V
Sbjct: 349 DLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEV 408

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFK 294
           T ++ LSA +   ++  GR +   M K  F+++        +++++ + G +E A A+ +
Sbjct: 409 TFMAVLSACAHGGLVEEGRRLFLSM-KGRFNMEPKADHYACMVDLFGRKGLLEEAKALIE 467

Query: 295 AIANKKLG-HWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
            +  +     W A+     +H   D  L  +   R I ++P
Sbjct: 468 RMPMEPTNVVWGALFGSCLLH--KDYELGKYAASRVIKLQP 506



 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 109/205 (53%), Gaps = 9/205 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +V+W  +I+ YV +   +  +L+F +ML  D+ P+  TL  V+  C+ + A+  G
Sbjct: 266 MPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRG 325

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +++H Y++K     +    ++L+++Y K G +  A  VF+++ +++V +W ++I+G+A +
Sbjct: 326 RRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAH 385

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA-- 174
           G    A  LF  M S     +  T+ A+L   A  G VE  R +F  M  + ++   A  
Sbjct: 386 GYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADH 445

Query: 175 ---MINGYMKSGKINLARQLFGQMP 196
              M++ + + G +  A+ L  +MP
Sbjct: 446 YACMVDLFGRKGLLEEAKALIERMP 470


>AT2G33760.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14275800-14277551 FORWARD
           LENGTH=583
          Length = 583

 Score =  337 bits (863), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 303/565 (53%), Gaps = 16/565 (2%)

Query: 57  VQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
           V++ +Q+H +++  G+G  + + + L+ +      +     +F  +   D   +NS+I  
Sbjct: 22  VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81

Query: 117 YARNG----NVEVAMKLFDEMPSRDAFTWTALLDGLA-----KCGKVEAAREVFDQMPKK 167
            ++       V    ++     S   +T+T+++   A     + GK      V       
Sbjct: 82  TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
           + V   A++  Y K G +  ARQ+F +MP +++++WNS++SG++ NG   EA+++F  + 
Sbjct: 142 TYVQ-AALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR 200

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           + G  P   T +S LSA +    +  G W+H +++    DL+  LGT+LI +YS+CG + 
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVG 260

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR-RIGMKPHAITFIGVLNAC 346
            A  VF  +    +  WTA+I   G HG   QA+ELF +M    G  P+ +TF+ VL+AC
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSAC 320

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV- 405
           +H GLV+EG   +  M   Y+++P VEH+ C+VD+L RAG L +A   I  +        
Sbjct: 321 AHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATA 380

Query: 406 --IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREM 463
             +W ++L + + H N ++G   A  LI  +PD  G + +LSNIYA +GK D+VSH+R+ 
Sbjct: 381 PALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDG 440

Query: 464 MKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQV 523
           M    + K  G S++E   K   F +GD+SH +T  IY  L  +  + K  G+ P + +V
Sbjct: 441 MMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEV 500

Query: 524 LXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYG 583
           +                  +LA++FGLL       I I+KNLR+C DCH+  K +S +  
Sbjct: 501 M-HQVEEEEKEFALRYHSEKLAVAFGLLKT-VDVAITIVKNLRICEDCHSAFKYISIVSN 558

Query: 584 REIIVRDNSRFHHFKNGTCSCNDFW 608
           R+I VRD  RFHHF+NG+CSC D+W
Sbjct: 559 RQITVRDKLRFHHFQNGSCSCLDYW 583



 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/324 (31%), Positives = 175/324 (54%), Gaps = 24/324 (7%)

Query: 29  FRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAK 88
           +R+ML  ++ P  +T   VIK C+ L A++ GK +H + +  GFG D +VQ++LV  Y+K
Sbjct: 95  YRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSK 154

Query: 89  WGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTAL 144
            G+M  AR+VFD+M ++ +V+WNSL+ G+ +NG  + A+++F +M       D+ T+ +L
Sbjct: 155 CGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSL 214

Query: 145 LDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AMINGYMKSGKINLARQLFGQMPGRN 199
           L   A+ G V     V  Q      +  N     A+IN Y + G +  AR++F +M   N
Sbjct: 215 LSACAQTGAVSLGSWV-HQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETN 273

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           + +W +MIS Y  +G   +A+ELF  +  + G +P++VT ++ LSA +   ++  GR ++
Sbjct: 274 VAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVY 333

Query: 259 SFMVKHCFDLDGVL-GTSLIEMYSKCGSIESAL-------AVFKAIANKKLGHWTAIIVG 310
             M K    + GV     +++M  + G ++ A        A  KA A      WTA++  
Sbjct: 334 KRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAP---ALWTAMLGA 390

Query: 311 LGMHGLADQALELFMEMRRIGMKP 334
             MH   D  +E+    R I ++P
Sbjct: 391 CKMHRNYDLGVEI--AKRLIALEP 412



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 138/262 (52%), Gaps = 15/262 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M + ++V+WN ++S +  N  +++A+ +F QM      PD  T   ++  C++  AV  G
Sbjct: 168 MPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLG 227

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H Y++  G   +  + ++L+N+Y++ G++G AR+VFDKM + +V +W ++I  Y  +
Sbjct: 228 SWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTH 287

Query: 121 GNVEVAMKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA- 174
           G  + A++LF++M     P  +  T+ A+L   A  G VE  R V+ +M K   +     
Sbjct: 288 GYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVE 347

Query: 175 ----MINGYMKSGKINLARQLFGQMPGRNLIS----WNSMISGYQLNGRFLEAMELFEVL 226
               M++   ++G ++ A +   Q+      +    W +M+   +++  +   +E+ + L
Sbjct: 348 HHVCMVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRL 407

Query: 227 LK-EGLMPSHVTILSALSAVSG 247
           +  E   P H  +LS + A+SG
Sbjct: 408 IALEPDNPGHHVMLSNIYALSG 429


>AT4G15720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:8949569-8951419 FORWARD
           LENGTH=616
          Length = 616

 Score =  335 bits (858), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 191/566 (33%), Positives = 313/566 (55%), Gaps = 20/566 (3%)

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +H   LK+GF  D F  + LV  Y K  E+  ARK+FD+M + +VVSW S+I GY   G 
Sbjct: 51  LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110

Query: 123 VEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWN 173
            + A+ +F +M        + +T+ ++    +   +    + +  ++     +++ V  +
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170

Query: 174 AMINGYMKSGKINLARQLFGQM--PGRNLISWNSMISGYQLNGRFLEAMELFEVL--LKE 229
           ++++ Y K   +  AR++F  M   GRN++SW SMI+ Y  N R  EA+ELF        
Sbjct: 171 SLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRSFNAALT 230

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
               +   + S +SA S L  L  G+  H  + +  ++ + V+ TSL++MY+KCGS+  A
Sbjct: 231 SDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCA 290

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
             +F  I    +  +T++I+    HGL + A++LF EM    + P+ +T +GVL+ACSH 
Sbjct: 291 EKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEMVAGRINPNYVTLLGVLHACSHS 350

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK--VIW 407
           GLV+EG +   +M  +Y +VP   HY C+VD+L R G + +A  + +++ +   +  ++W
Sbjct: 351 GLVNEGLEYLSLMAEKYGVVPDSRHYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLW 410

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            +LLS+ R HG +EI   A+  LI+++   T  Y  LSN YA +G W+    +R  MK  
Sbjct: 411 GALLSAGRLHGRVEIVSEASKRLIQSNQQVTSAYIALSNAYAVSGGWEDSESLRLEMKRS 470

Query: 468 GVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGH-----VPDTSQ 522
           G +K+  CS +E++  +  F  GD S  ++  I   L+++ K++K  GH     +  TS 
Sbjct: 471 GNVKERACSWIENKDSVYVFHAGDLSCDESGEIERFLKDLEKRMKERGHRGSSSMITTSS 530

Query: 523 VLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIY 582
            +                  RLA+++GLL++   + IRIM NLR+C DCH   KL+S I 
Sbjct: 531 SVFVDVDEEAKDEMVSLHCERLALAYGLLHLPAGSTIRIMNNLRMCRDCHEAFKLISEIV 590

Query: 583 GREIIVRDNSRFHHFKNGTCSCNDFW 608
            REI+VRD +RFH FKNG+C+C D+W
Sbjct: 591 EREIVVRDVNRFHCFKNGSCTCRDYW 616



 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 168/333 (50%), Gaps = 19/333 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD--LLPDGFTLPCVIKGCSRLHAVQ 58
           M +P +VSW  +IS Y    +  +AL +F++M H D  + P+ +T   V K CS L   +
Sbjct: 90  MCEPNVVSWTSVISGYNDMGKPQNALSMFQKM-HEDRPVPPNEYTFASVFKACSALAESR 148

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV--DRDVVSWNSLIDG 116
            GK IH  +   G   +  V SSLV+MY K  ++  AR+VFD M+   R+VVSW S+I  
Sbjct: 149 IGKNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITA 208

Query: 117 YARNGNVEVAMKLFDEMPS------RDAFTWTALLDGLAKCGKVEAAREVFDQMPK---- 166
           YA+N     A++LF    +       + F   +++   +  G+++  +     + +    
Sbjct: 209 YAQNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYE 268

Query: 167 KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
            ++V   ++++ Y K G ++ A ++F ++   ++IS+ SMI     +G    A++LF+ +
Sbjct: 269 SNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDEM 328

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCGS 285
           +   + P++VT+L  L A S   ++  G    S M  K+    D    T +++M  + G 
Sbjct: 329 VAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGVVPDSRHYTCVVDMLGRFGR 388

Query: 286 IESALAVFKAI---ANKKLGHWTAIIVGLGMHG 315
           ++ A  + K I   A +    W A++    +HG
Sbjct: 389 VDEAYELAKTIEVGAEQGALLWGALLSAGRLHG 421



 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 127/258 (49%), Gaps = 17/258 (6%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQM---LHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +VSW  +I+ Y  N R ++A+ LFR     L  D   + F L  VI  CS L  +Q GK 
Sbjct: 199 VVSWTSMITAYAQNARGHEAIELFRSFNAALTSDR-ANQFMLASVISACSSLGRLQWGKV 257

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
            HG V + G+  +  V +SL++MYAK G +  A K+F ++    V+S+ S+I   A++G 
Sbjct: 258 AHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGL 317

Query: 123 VEVAMKLFDEM-PSRDAFTWTALLDGLAKC---GKVEAAREVFDQMPKKSSV-----SWN 173
            E A+KLFDEM   R    +  LL  L  C   G V    E    M +K  V      + 
Sbjct: 318 GEAAVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGVVPDSRHYT 377

Query: 174 AMINGYMKSGKINLARQLFGQM---PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
            +++   + G+++ A +L   +     +  + W +++S  +L+GR     E  + L++  
Sbjct: 378 CVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSN 437

Query: 231 LMPSHVTI-LSALSAVSG 247
              +   I LS   AVSG
Sbjct: 438 QQVTSAYIALSNAYAVSG 455


>AT3G01580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:223529-225511 REVERSE
           LENGTH=660
          Length = 660

 Score =  335 bits (858), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 178/524 (33%), Positives = 300/524 (57%), Gaps = 13/524 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQM-LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           + KP +V+W+ ++S +  N     A+  FR+M +  D+ PD  TL  ++  C++L   + 
Sbjct: 122 LEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRL 181

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+ +HG+V++ GF  D  + +SL+N YAK      A  +F  + ++DV+SW+++I  Y +
Sbjct: 182 GRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQ 241

Query: 120 NGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-----SV 170
           NG    A+ +F++M       +  T   +L   A    +E  R+  +   +K       V
Sbjct: 242 NGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKV 301

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV-LLKE 229
           S  A+++ YMK      A  +F ++P ++++SW ++ISG+ LNG    ++E F + LL+ 
Sbjct: 302 S-TALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLEN 360

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
              P  + ++  L + S L  L   +  HS+++K+ FD +  +G SL+E+YS+CGS+ +A
Sbjct: 361 NTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNA 420

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGVLNACSH 348
             VF  IA K    WT++I G G+HG   +ALE F  M +   +KP+ +TF+ +L+ACSH
Sbjct: 421 SKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSH 480

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
            GL+ EG + F +M+N+Y++ P +EHY  LVD+L R G L  A  I + MP  P   I  
Sbjct: 481 AGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILG 540

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
           +LL + R H N E+ E  A  L E + +  G Y L+SN+Y   G+W+ V  +R  +K+RG
Sbjct: 541 TLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRG 600

Query: 469 VLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
           + K    S++E R K++RF+  D+ HP+ + +Y  L+E+   +K
Sbjct: 601 IKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMK 644



 Score =  208 bits (530), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 128/429 (29%), Positives = 215/429 (50%), Gaps = 13/429 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K +L  WN ++       +  + L  F  M   +  PD FTLP  +K C  L  V  G
Sbjct: 20  MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 79

Query: 61  KQIHGYVLK-IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           + IHG+V K +  G D +V SSL+ MY K G M  A ++FD++   D+V+W+S++ G+ +
Sbjct: 80  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 139

Query: 120 NGNVEVAMKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--- 171
           NG+   A++ F  M      + D  T   L+    K       R V   + ++   +   
Sbjct: 140 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLS 199

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             N+++N Y KS     A  LF  +  +++ISW+++I+ Y  NG   EA+ +F  ++ +G
Sbjct: 200 LVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDG 259

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             P+  T+L  L A +    L  GR  H   ++   + +  + T+L++MY KC S E A 
Sbjct: 260 TEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAY 319

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELF-MEMRRIGMKPHAITFIGVLNACSHK 349
           AVF  I  K +  W A+I G  ++G+A +++E F + +     +P AI  + VL +CS  
Sbjct: 320 AVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSEL 379

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
           G +++  KCF   + +Y           LV++  R G L  A  +   + ++ + V+W S
Sbjct: 380 GFLEQA-KCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALK-DTVVWTS 437

Query: 410 LLSSSRNHG 418
           L++    HG
Sbjct: 438 LITGYGIHG 446



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 2/162 (1%)

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           ARQ+FG+M  R+L  WN+++       ++ E +  F  + ++   P + T+  AL A   
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 248 LAVLGNGRWIHSFMVKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTA 306
           L  +  G  IH F+ K      D  +G+SLI MY KCG +  AL +F  +    +  W++
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSS 132

Query: 307 IIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACS 347
           ++ G   +G   QA+E F  M     + P  +T I +++AC+
Sbjct: 133 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACT 174


>AT5G15300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:4968384-4970030 REVERSE
           LENGTH=548
          Length = 548

 Score =  333 bits (853), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/504 (34%), Positives = 292/504 (57%), Gaps = 41/504 (8%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP +   N ++     + +    + L+ +M    + PD +T   V+K CS+L     G  
Sbjct: 74  KPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFA 133

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
            HG V++ GF  +++V+++L+  +A  G++G                             
Sbjct: 134 FHGKVVRHGFVLNEYVKNALILFHANCGDLG----------------------------- 164

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKS 182
             +A +LFD+        W+++  G AK GK++ A  +FD+MP K  V+WN MI G +K 
Sbjct: 165 --IASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKC 222

Query: 183 GKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL 242
            +++ AR+LF +   +++++WN+MISGY   G   EA+ +F+ +   G  P  VTILS L
Sbjct: 223 KEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLL 282

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGT----SLIEMYSKCGSIESALAVFKAIA 297
           SA + L  L  G+ +H ++++       + +GT    +LI+MY+KCGSI+ A+ VF+ + 
Sbjct: 283 SACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVK 342

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           ++ L  W  +IVGL +H  A+ ++E+F EM+R+ + P+ +TFIGV+ ACSH G VDEG K
Sbjct: 343 DRDLSTWNTLIVGLALHH-AEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRK 401

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
            F +M + Y I P ++HYGC+VD+L RAG L++A   +ESM + PN ++W +LL + + +
Sbjct: 402 YFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIY 461

Query: 418 GNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           GN+E+G+YA   L+    D +G Y LLSNIYA+ G+WD V  VR+M  +  V K  G S+
Sbjct: 462 GNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSL 521

Query: 478 VEHRGK--LNRFIVGDKSHPQTKA 499
           +E      + R+++   S P++++
Sbjct: 522 IEEDDDKLMMRYLLS--SEPESRS 543



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 124/294 (42%), Gaps = 18/294 (6%)

Query: 183 GKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL 242
           G +  A +LF ++P  ++   N ++ G   + +  + + L+  + K G+ P   T    L
Sbjct: 60  GALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVL 119

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG 302
            A S L    NG   H  +V+H F L+  +  +LI  ++ CG +  A  +F   A     
Sbjct: 120 KACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKV 179

Query: 303 HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM 362
            W+++  G    G  D+A+ LF EM         +   G L  C     +D   + FD  
Sbjct: 180 AWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLK-CKE---MDSARELFDRF 235

Query: 363 INEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGN 419
             +      V  +  ++      G+ ++A  I + M      P+ V  +SLLS+    G+
Sbjct: 236 TEK-----DVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGD 290

Query: 420 LEIGEYAAHNLIEADPDATGCYT------LLSNIYAAAGKWDKVSHVREMMKER 467
           LE G+     ++E    ++  Y        L ++YA  G  D+   V   +K+R
Sbjct: 291 LETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDR 344


>AT3G61170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:22638691-22641237 REVERSE
           LENGTH=783
          Length = 783

 Score =  332 bits (852), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/581 (32%), Positives = 310/581 (53%), Gaps = 45/581 (7%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V+W  +++ Y  N  +  A+  FR +       + +T P V+  C+ + A + G Q+H  
Sbjct: 193 VTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCC 252

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           ++K GF  + +VQS+L++MYAK  EM  AR + + M   DVVSWNS+I G  R G +  A
Sbjct: 253 IVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEA 312

Query: 127 MKLFDEMPSRDA----FTWTALLDGLAKC-GKVEAAREVFDQMPKKSSVSW----NAMIN 177
           + +F  M  RD     FT  ++L+  A    +++ A      + K    ++    NA+++
Sbjct: 313 LSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVD 372

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K G ++ A ++F  M  +++ISW ++++G   NG + EA++LF  +   G+ P  + 
Sbjct: 373 MYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIV 432

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
             S LSA + L +L  G+ +H   +K  F     +  SL+ MY+KCGS+E A  +F ++ 
Sbjct: 433 TASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSME 492

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            + L  WT +IVG                                    +  GL+++  +
Sbjct: 493 IRDLITWTCLIVGY-----------------------------------AKNGLLEDAQR 517

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
            FD M   Y I P  EHY C++D+  R+G   + + ++  M + P+  +W ++L++SR H
Sbjct: 518 YFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKH 577

Query: 418 GNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           GN+E GE AA  L+E +P+    Y  LSN+Y+AAG+ D+ ++VR +MK R + K+ GCS 
Sbjct: 578 GNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSW 637

Query: 478 VEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXX 537
           VE +GK++ F+  D+ HP+   IY+K+ EM   +K AG+  D S  L             
Sbjct: 638 VEEKGKVHSFMSEDRRHPRMVEIYSKVDEMMLLIKEAGYFADMSFAL-HDLDKEGKELGL 696

Query: 538 XXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLL 578
                +LA++FGLL +    PIRI+KNLRVC DCH+  KLL
Sbjct: 697 AYHSEKLAVAFGLLVVPSGAPIRIIKNLRVCGDCHSAMKLL 737



 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 149/270 (55%), Gaps = 5/270 (1%)

Query: 144 LLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISW 203
           LL  L+K G+V+ AR++FD+MP++   +WN MI  Y  S +++ A +LF   P +N ISW
Sbjct: 34  LLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISW 93

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           N++ISGY  +G  +EA  LF  +  +G+ P+  T+ S L   + L +L  G  IH   +K
Sbjct: 94  NALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIK 153

Query: 264 HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG-HWTAIIVGLGMHGLADQALE 322
             FDLD  +   L+ MY++C  I  A  +F+ +  +K    WT+++ G   +G A +A+E
Sbjct: 154 TGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIE 213

Query: 323 LFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDI 381
            F ++RR G + +  TF  VL AC+       G +    ++   +K    V+    L+D+
Sbjct: 214 CFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQ--SALIDM 271

Query: 382 LCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
             +   ++ A+ ++E M +  + V W S++
Sbjct: 272 YAKCREMESARALLEGMEV-DDVVSWNSMI 300



 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 182/415 (43%), Gaps = 72/415 (17%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G  IH Y  +      K   + L+   +K G +  AR++FDKM +RD  +WN++I  Y+ 
Sbjct: 17  GSCIHSYADRT-----KLHSNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSN 71

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVSW- 172
           +  +  A KLF   P ++  +W AL+ G  K G    A  +F +M      P + ++   
Sbjct: 72  SRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSV 131

Query: 173 --------------------------------NAMINGYMKSGKINLARQLFGQMPG-RN 199
                                           N ++  Y +  +I+ A  LF  M G +N
Sbjct: 132 LRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKN 191

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
            ++W SM++GY  NG   +A+E F  L +EG   +  T  S L+A + ++    G  +H 
Sbjct: 192 NVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHC 251

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
            +VK  F  +  + ++LI+MY+KC  +ESA A+ + +    +  W ++IVG    GL  +
Sbjct: 252 CIVKSGFKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGE 311

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY---- 375
           AL +F  M    MK    T   +LN             CF +   E KI  +        
Sbjct: 312 ALSMFGRMHERDMKIDDFTIPSILN-------------CFALSRTEMKIASSAHCLIVKT 358

Query: 376 ---------GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
                      LVD+  + G +  A  + E M +  + + W +L++ + ++G+ +
Sbjct: 359 GYATYKLVNNALVDMYAKRGIMDSALKVFEGM-IEKDVISWTALVTGNTHNGSYD 412



 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 120/237 (50%), Gaps = 13/237 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE- 59
           M    +VSWN +I   V      +AL +F +M   D+  D FT+P ++  C  L   +  
Sbjct: 288 MEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSIL-NCFALSRTEMK 346

Query: 60  -GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
                H  ++K G+   K V ++LV+MYAK G M  A KVF+ M+++DV+SW +L+ G  
Sbjct: 347 IASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNT 406

Query: 119 RNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQ-----MPKKSS 169
            NG+ + A+KLF  M     + D     ++L   A+   +E  ++V         P   S
Sbjct: 407 HNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLS 466

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
           V+ N+++  Y K G +  A  +F  M  R+LI+W  +I GY  NG   +A   F+ +
Sbjct: 467 VN-NSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDSM 522



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 108/228 (47%), Gaps = 9/228 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SW  +++   HN   ++AL LF  M    + PD      V+   + L  ++ G
Sbjct: 390 MIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFG 449

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+HG  +K GF     V +SLV MY K G +  A  +F+ M  RD+++W  LI GYA+N
Sbjct: 450 QQVHGNYIKSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKN 509

Query: 121 GNVEVAMKLFDEMPSRDAFT-----WTALLDGLAKCGKVEAAREVFDQMP-KKSSVSWNA 174
           G +E A + FD M +    T     +  ++D   + G      ++  QM  +  +  W A
Sbjct: 510 GLLEDAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQMEVEPDATVWKA 569

Query: 175 MINGYMKSGKI---NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA 219
           ++    K G I     A +   ++   N + +  + + Y   GR  EA
Sbjct: 570 ILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQDEA 617


>AT3G63370.1 | Symbols: OTP86 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:23402080-23405180 FORWARD
           LENGTH=884
          Length = 884

 Score =  330 bits (845), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/519 (35%), Positives = 299/519 (57%), Gaps = 7/519 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M+   +V+WN +I  YV N    +AL  F  M+      D  ++  +I    RL  +  G
Sbjct: 346 MNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG 405

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            ++H YV+K G+  +  V ++L++MY+K        + F +M D+D++SW ++I GYA+N
Sbjct: 406 MELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQN 465

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK---SSVSWN 173
                A++LF ++  +    D     ++L   +    +   +E+   + +K    +V  N
Sbjct: 466 DCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQN 525

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
            +++ Y K   +  A ++F  + G++++SW SMIS   LNG   EA+ELF  +++ GL  
Sbjct: 526 ELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSA 585

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
             V +L  LSA + L+ L  GR IH ++++  F L+G +  ++++MY+ CG ++SA AVF
Sbjct: 586 DSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVF 645

Query: 294 KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
             I  K L  +T++I   GMHG    A+ELF +MR   + P  I+F+ +L ACSH GL+D
Sbjct: 646 DRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLD 705

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           EG     +M +EY++ P  EHY CLVD+L RA  + +A   ++ M   P   +W +LL++
Sbjct: 706 EGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAA 765

Query: 414 SRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
            R+H   EIGE AA  L+E +P   G   L+SN++A  G+W+ V  VR  MK  G+ K  
Sbjct: 766 CRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHP 825

Query: 474 GCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
           GCS +E  GK+++F   DKSHP++K IY KL E+++KL+
Sbjct: 826 GCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLE 864



 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 222/432 (51%), Gaps = 19/432 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFT-LPCVIKGCSRLHAVQE 59
           M   T  +WN +I  YV N     AL L+  M   + +P G +  P ++K C++L  ++ 
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRDIRS 200

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVSWNSLIDGYA 118
           G ++H  ++K+G+    F+ ++LV+MYAK  ++  AR++FD   ++ D V WNS++  Y+
Sbjct: 201 GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYS 260

Query: 119 RNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--- 171
            +G     ++LF EM    P+ +++T  + L         +  +E+   + K S+ S   
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 172 --WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
              NA+I  Y + GK+  A ++  QM   ++++WNS+I GY  N  + EA+E F  ++  
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           G     V++ S ++A   L+ L  G  +H++++KH +D +  +G +LI+MYSKC      
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS-- 347
              F  + +K L  WT +I G   +    +ALELF ++ +  M+   +    +L A S  
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVL 500

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
              L+ +   C  +       V   E    LVD+  +  ++  A  + ES+  + + V W
Sbjct: 501 KSMLIVKEIHCHILRKGLLDTVIQNE----LVDVYGKCRNMGYATRVFESIKGK-DVVSW 555

Query: 408 MSLLSSSRNHGN 419
            S++SSS  +GN
Sbjct: 556 TSMISSSALNGN 567



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 240/503 (47%), Gaps = 45/503 (8%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
            K   V WN I+S Y  + +S + L LFR+M      P+ +T+   +  C      + GK
Sbjct: 245 EKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGK 304

Query: 62  QIHGYVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +IH  VLK      + +V ++L+ MY + G+M  A ++  +M + DVV+WNSLI GY +N
Sbjct: 305 EIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQN 364

Query: 121 GNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----W 172
              + A++ F +M +     D  + T+++    +   + A  E+   + K    S     
Sbjct: 365 LMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVG 424

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N +I+ Y K        + F +M  ++LISW ++I+GY  N   +EA+ELF  + K+ + 
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
              + + S L A S L  +   + IH  +++    LD V+   L+++Y KC ++  A  V
Sbjct: 485 IDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRV 543

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F++I  K +  WT++I    ++G   +A+ELF  M   G+   ++  + +L+A +    +
Sbjct: 544 FESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSAL 603

Query: 353 DEGNK--CF----DMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
           ++G +  C+       +     V  V+ Y C        G LQ AK + + +  R   + 
Sbjct: 604 NKGREIHCYLLRKGFCLEGSIAVAVVDMYAC-------CGDLQSAKAVFDRIE-RKGLLQ 655

Query: 407 WMSLLSSSRNHG----NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVRE 462
           + S++++   HG     +E+ +   H  +  D       + L+ +YA        SH   
Sbjct: 656 YTSMINAYGMHGCGKAAVELFDKMRHENVSPDH-----ISFLALLYAC-------SHAGL 703

Query: 463 MMKERGVLKDAGCSIVEHRGKLN 485
           + + RG LK     I+EH  +L 
Sbjct: 704 LDEGRGFLK-----IMEHEYELE 721



 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 160/312 (51%), Gaps = 15/312 (4%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFD-KFVQSSLVNMYAKWGEMGLARKVFDKMVDR 105
           V++ C +  AV +G+Q+H  + K    F+  F+   LV MY K G +  A KVFD+M DR
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDR 145

Query: 106 DVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVF 161
              +WN++I  Y  NG    A+ L+  M          ++ ALL   AK   + +  E+ 
Sbjct: 146 TAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELH 205

Query: 162 DQMPK----KSSVSWNAMINGYMKSGKINLARQLF-GQMPGRNLISWNSMISGYQLNGRF 216
             + K     +    NA+++ Y K+  ++ AR+LF G     + + WNS++S Y  +G+ 
Sbjct: 206 SLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKS 265

Query: 217 LEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK---HCFDLDGVLG 273
           LE +ELF  +   G  P+  TI+SAL+A  G +    G+ IH+ ++K   H  +L   + 
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL--YVC 323

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            +LI MY++CG +  A  + + + N  +  W ++I G   + +  +ALE F +M   G K
Sbjct: 324 NALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHK 383

Query: 334 PHAITFIGVLNA 345
              ++   ++ A
Sbjct: 384 SDEVSMTSIIAA 395



 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 6/236 (2%)

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y K G ++ A ++F +MP R   +WN+MI  Y  NG    A+ L+  +  EG+     + 
Sbjct: 126 YGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSF 185

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
            + L A + L  + +G  +HS +VK  +   G +  +L+ MY+K   + +A  +F     
Sbjct: 186 PALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 245

Query: 299 KKLG-HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           K     W +I+      G + + LELF EM   G  P++ T +  L AC        G +
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE 305

Query: 358 CFDMMINEYKIVPTVEHYGC--LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
               ++       + E Y C  L+ +  R G + QA+ I+  M    + V W SL+
Sbjct: 306 IHASVLKSS--THSSELYVCNALIAMYTRCGKMPQAERILRQMN-NADVVTWNSLI 358



 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 9/207 (4%)

Query: 250 VLGNGRWIHSFMVKH--CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
            +  GR +HS + K    F+LD + G  L+ MY KCGS++ A  VF  + ++    W  +
Sbjct: 95  AVSQGRQLHSRIFKTFPSFELDFLAG-KLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTM 153

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I     +G    AL L+  MR  G+     +F  +L AC+    +  G++   +++ +  
Sbjct: 154 IGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV-KLG 212

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG-NLEIGE-Y 425
              T      LV +  +   L  A+ + +    + + V+W S+LSS    G +LE  E +
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELF 272

Query: 426 AAHNLIEADPDATGCYTLLSNIYAAAG 452
              ++    P++   YT++S + A  G
Sbjct: 273 REMHMTGPAPNS---YTIVSALTACDG 296


>AT3G09040.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily
            protein | chr3:2761195-2764281 REVERSE LENGTH=1028
          Length = 1028

 Score =  330 bits (845), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/517 (35%), Positives = 297/517 (57%), Gaps = 12/517 (2%)

Query: 7    VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
            V+WN II  YV +   ++A  LF++M    ++ DG  L   +K C+ +H + +GKQ+H  
Sbjct: 495  VTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCL 554

Query: 67   VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
             +K G   D    SSL++MY+K G +  ARKVF  + +  VVS N+LI GY++N N+E A
Sbjct: 555  SVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEA 613

Query: 127  MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AMIN 177
            + LF EM +R       T+  +++   K   +    +   Q+ K+   S       +++ 
Sbjct: 614  VVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLG 673

Query: 178  GYMKSGKINLARQLFGQMPG-RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
             YM S  +  A  LF ++   ++++ W  M+SG+  NG + EA++ ++ +  +G++P   
Sbjct: 674  MYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQA 733

Query: 237  TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
            T ++ L   S L+ L  GR IHS +     DLD +   +LI+MY+KCG ++ +  VF  +
Sbjct: 734  TFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEM 793

Query: 297  ANKK-LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
              +  +  W ++I G   +G A+ AL++F  MR+  + P  ITF+GVL ACSH G V +G
Sbjct: 794  RRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDG 853

Query: 356  NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
             K F+MMI +Y I   V+H  C+VD+L R G+LQ+A + IE+  ++P+  +W SLL + R
Sbjct: 854  RKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACR 913

Query: 416  NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
             HG+   GE +A  LIE +P  +  Y LLSNIYA+ G W+K + +R++M++RGV K  G 
Sbjct: 914  IHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGY 973

Query: 476  SIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
            S ++   + + F  GDKSH +   I   L ++   +K
Sbjct: 974  SWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMK 1010



 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/412 (28%), Positives = 205/412 (49%), Gaps = 37/412 (8%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + +WN ++S Y    +    L  F  +  + + P+ FT   V+  C+R   V+ G+QIH 
Sbjct: 125 VTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHC 184

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            ++K+G   + +   +LV+MYAK           D++ D                     
Sbjct: 185 SMIKMGLERNSYCGGALVDMYAKC----------DRISD--------------------- 213

Query: 126 AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMINGYMK 181
           A ++F+ +   +   WT L  G  K G  E A  VF++M     +   +++  +IN Y++
Sbjct: 214 ARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIR 273

Query: 182 SGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSA 241
            GK+  AR LFG+M   ++++WN MISG+   G    A+E F  + K  +  +  T+ S 
Sbjct: 274 LGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSV 333

Query: 242 LSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL 301
           LSA+  +A L  G  +H+  +K     +  +G+SL+ MYSKC  +E+A  VF+A+  K  
Sbjct: 334 LSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKND 393

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
             W A+I G   +G + + +ELFM+M+  G      TF  +L+ C+    ++ G++ F  
Sbjct: 394 VFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHS 452

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           +I + K+   +     LVD+  + G L+ A+ I E M  R N V W +++ S
Sbjct: 453 IIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDN-VTWNTIIGS 503



 Score =  176 bits (445), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/430 (29%), Positives = 210/430 (48%), Gaps = 11/430 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M  P +V+WN++IS +        A+  F  M    +     TL  V+     +  +  G
Sbjct: 287 MSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLG 346

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H   +K+G   + +V SSLV+MY+K  +M  A KVF+ + +++ V WN++I GYA N
Sbjct: 347 LVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHN 406

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----W 172
           G     M+LF +M S     D FT+T+LL   A    +E   +    + KK         
Sbjct: 407 GESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVG 466

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           NA+++ Y K G +  ARQ+F +M  R+ ++WN++I  Y  +    EA +LF+ +   G++
Sbjct: 467 NALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIV 526

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
                + S L A + +  L  G+ +H   VK   D D   G+SLI+MYSKCG I+ A  V
Sbjct: 527 SDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKV 586

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F ++    +    A+I G   + L ++A+ LF EM   G+ P  ITF  ++ AC     +
Sbjct: 587 FSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESL 645

Query: 353 DEGNKCFDMMINEYKIVPTVEHYG-CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
             G + F   I +       E+ G  L+ +   +  + +A  +   +    + V+W  ++
Sbjct: 646 TLGTQ-FHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMM 704

Query: 412 SSSRNHGNLE 421
           S    +G  E
Sbjct: 705 SGHSQNGFYE 714



 Score =  119 bits (298), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 99/165 (60%), Gaps = 5/165 (3%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           ++V W  ++S +  N    +AL  +++M H  +LPD  T   V++ CS L +++EG+ IH
Sbjct: 696 SIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIH 755

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVSWNSLIDGYARNGNV 123
             +  +    D+   ++L++MYAK G+M  + +VFD+M  R +VVSWNSLI+GYA+NG  
Sbjct: 756 SLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYA 815

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM 164
           E A+K+FD M       D  T+  +L   +  GKV   R++F+ M
Sbjct: 816 EDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMM 860



 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 118/252 (46%), Gaps = 24/252 (9%)

Query: 133 MPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-------------------- 172
           +PS D      L   L +C K+  +R+VFD+MP++ +++                     
Sbjct: 38  LPSHDQIHQRLLEICLGQC-KLFKSRKVFDEMPQRLALALRIGKAVHSKSLILGIDSEGR 96

Query: 173 --NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             NA+++ Y K  +++ A + F  +  +++ +WNSM+S Y   G+  + +  F  L +  
Sbjct: 97  LGNAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQ 155

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P+  T    LS  +    +  GR IH  M+K   + +   G +L++MY+KC  I  A 
Sbjct: 156 IFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDAR 215

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF+ I +     WT +  G    GL ++A+ +F  MR  G +P  + F+ V+N     G
Sbjct: 216 RVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLG 275

Query: 351 LVDEGNKCFDMM 362
            + +    F  M
Sbjct: 276 KLKDARLLFGEM 287



 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 82/168 (48%), Gaps = 12/168 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +  +VSWN +I+ Y  N  + DAL +F  M    ++PD  T   V+  CS    V +G++
Sbjct: 796 RSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAGKVSDGRK 855

Query: 63  IHGYVLKIG-FGFDKFVQ--SSLVNMYAKWGEMGLARKVFD-KMVDRDVVSWNSLIDGYA 118
           I  + + IG +G +  V   + +V++  +WG +  A    + + +  D   W+SL+    
Sbjct: 856 I--FEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWSSLLGACR 913

Query: 119 RNGNV---EVAMKLFDEMPSRDAFTWTALLDGLAKCG---KVEAAREV 160
            +G+    E++ +   E+  +++  +  L +  A  G   K  A R+V
Sbjct: 914 IHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKV 961


>AT4G22760.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11960553-11962289 FORWARD
           LENGTH=578
          Length = 578

 Score =  330 bits (845), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 170/505 (33%), Positives = 288/505 (57%), Gaps = 34/505 (6%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           SW  ++     + +  + + ++  M +  + P    +  V++ C ++  + +GK IH   
Sbjct: 71  SWGCLVRFLSQHRKFKETVDVYIDMHNSGIPPSSHAVTSVLRACGKMENMVDGKPIHAQA 130

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           LK G     +VQ+ LV +Y++ G + LA+K FD + +++ VSWNSL+ GY  +G ++ A 
Sbjct: 131 LKNGLCGCVYVQTGLVGLYSRLGYIELAKKAFDDIAEKNTVSWNSLLHGYLESGELDEAR 190

Query: 128 KLFDEMPSRDAFTWTALLDGLAK-------------------------------CGKVEA 156
           ++FD++P +DA +W  ++   AK                               C +++ 
Sbjct: 191 RVFDKIPEKDAVSWNLIISSYAKKGDMGNACSLFSAMPLKSPASWNILIGGYVNCREMKL 250

Query: 157 AREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRF 216
           AR  FD MP+K+ VSW  MI+GY K G +  A +LF  M  ++ + +++MI+ Y  NG+ 
Sbjct: 251 ARTYFDAMPQKNGVSWITMISGYTKLGDVQSAEELFRLMSKKDKLVYDAMIACYTQNGKP 310

Query: 217 LEAMELFEVLLKEG--LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
            +A++LF  +L+    + P  +T+ S +SA S L     G W+ S++ +H   +D +L T
Sbjct: 311 KDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTSFGTWVESYITEHGIKIDDLLST 370

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           SLI++Y K G    A  +F  +  K    ++A+I+G G++G+A +A  LF  M    + P
Sbjct: 371 SLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCGINGMATEANSLFTAMIEKKIPP 430

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
           + +TF G+L+A SH GLV EG KCF+ M  ++ + P+ +HYG +VD+L RAG L++A  +
Sbjct: 431 NVVTFTGLLSAYSHSGLVQEGYKCFNSM-KDHNLEPSADHYGIMVDMLGRAGRLEEAYEL 489

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKW 454
           I+SMPM+PN  +W +LL +S  H N+E GE A  + ++ + D TG  + L+ IY++ G+W
Sbjct: 490 IKSMPMQPNAGVWGALLLASGLHNNVEFGEIACSHCVKLETDPTGYLSHLAMIYSSVGRW 549

Query: 455 DKVSHVREMMKERGVLKDAGCSIVE 479
           D    VR+ +KE+ + K  GCS VE
Sbjct: 550 DDARTVRDSIKEKKLCKTLGCSWVE 574



 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 13/231 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD--LLPDGFTLPCVIKGCSRLHAVQ 58
           M K   + ++ +I+CY  N +  DAL LF QML  +  + PD  TL  V+   S+L    
Sbjct: 289 MSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANSQLGNTS 348

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
            G  +  Y+ + G   D  + +SL+++Y K G+   A K+F  +  +D VS++++I G  
Sbjct: 349 FGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSAMIMGCG 408

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSV 170
            NG    A  LF  M  +    +  T+T LL   +  G V+   + F+ M     + S+ 
Sbjct: 409 INGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHNLEPSAD 468

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMI--SGYQLNGRFLE 218
            +  M++   ++G++  A +L   MP + N   W +++  SG   N  F E
Sbjct: 469 HYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLHNNVEFGE 519



 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 142/350 (40%), Gaps = 81/350 (23%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VSWNLIIS Y       +A  LF  M      P  + +                      
Sbjct: 202 VSWNLIISSYAKKGDMGNACSLFSAMPLKS--PASWNI---------------------- 237

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
                          L+  Y    EM LAR  FD M  ++ VSW ++I GY + G+V+ A
Sbjct: 238 ---------------LIGGYVNCREMKLARTYFDAMPQKNGVSWITMISGYTKLGDVQSA 282

Query: 127 MKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV---------------- 170
            +LF  M  +D   + A++    + GK + A ++F QM +++S                 
Sbjct: 283 EELFRLMSKKDKLVYDAMIACYTQNGKPKDALKLFAQMLERNSYIQPDEITLSSVVSANS 342

Query: 171 --------SW-----------------NAMINGYMKSGKINLARQLFGQMPGRNLISWNS 205
                   +W                  ++I+ YMK G    A ++F  +  ++ +S+++
Sbjct: 343 QLGNTSFGTWVESYITEHGIKIDDLLSTSLIDLYMKGGDFAKAFKMFSNLNKKDTVSYSA 402

Query: 206 MISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC 265
           MI G  +NG   EA  LF  ++++ + P+ VT    LSA S   ++  G    + M  H 
Sbjct: 403 MIMGCGINGMATEANSLFTAMIEKKIPPNVVTFTGLLSAYSHSGLVQEGYKCFNSMKDHN 462

Query: 266 FDLDGVLGTSLIEMYSKCGSIESALAVFKAIA-NKKLGHWTAIIVGLGMH 314
            +        +++M  + G +E A  + K++      G W A+++  G+H
Sbjct: 463 LEPSADHYGIMVDMLGRAGRLEEAYELIKSMPMQPNAGVWGALLLASGLH 512


>AT3G56550.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20952896-20954641 REVERSE
           LENGTH=581
          Length = 581

 Score =  329 bits (844), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 177/574 (30%), Positives = 319/574 (55%), Gaps = 15/574 (2%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAK--WGEMGLARKVFDKM-V 103
           +++GC+   ++++ ++IH +V+  G      + + L+   A    G +  A+ +FD    
Sbjct: 11  MLQGCN---SMKKLRKIHSHVIINGLQHHPSIFNHLLRFCAVSVTGSLSHAQLLFDHFDS 67

Query: 104 DRDVVSWNSLIDGYARNGNVEVAMKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAR 158
           D     WN LI G++ + +   ++  ++ M        D FT+   L    +   +    
Sbjct: 68  DPSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCL 127

Query: 159 EVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
           E+   + +      ++   +++  Y  +G + +A ++F +MP R+L+SWN MI  +   G
Sbjct: 128 EIHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVG 187

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
              +A+ +++ +  EG+     T+++ LS+ + ++ L  G  +H        +    +  
Sbjct: 188 LHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSN 247

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           +LI+MY+KCGS+E+A+ VF  +  + +  W ++I+G G+HG   +A+  F +M   G++P
Sbjct: 248 ALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRP 307

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
           +AITF+G+L  CSH+GLV EG + F++M +++ + P V+HYGC+VD+  RAG L+ +  +
Sbjct: 308 NAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMVDLYGRAGQLENSLEM 367

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKW 454
           I +     + V+W +LL S + H NLE+GE A   L++ +    G Y L+++IY+AA   
Sbjct: 368 IYASSCHEDPVLWRTLLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDA 427

Query: 455 DKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLA 514
              + +R++++   +    G S +E   ++++F+V DK HP++  IY++L E+  +  LA
Sbjct: 428 QAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILA 487

Query: 515 GHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAV 574
           G+ P+ S                     +LAI++GL+     T +RI KNLRVC DCH+ 
Sbjct: 488 GYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSF 547

Query: 575 TKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           TK +S  + REIIVRD  RFHHF +G CSCND+W
Sbjct: 548 TKYVSKAFNREIIVRDRVRFHHFADGICSCNDYW 581



 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 152/303 (50%), Gaps = 12/303 (3%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQEGKQ 62
           P+   WN +I  + ++    +++L + +ML   +  PD FT    +K C R+ ++ +  +
Sbjct: 69  PSTSDWNYLIRGFSNSSSPLNSILFYNRMLLSSVSRPDLFTFNFALKSCERIKSIPKCLE 128

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           IHG V++ GF  D  V +SLV  Y+  G + +A KVFD+M  RD+VSWN +I  ++  G 
Sbjct: 129 IHGSVIRSGFLDDAIVATSLVRCYSANGSVEIASKVFDEMPVRDLVSWNVMICCFSHVGL 188

Query: 123 VEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAA----REVFDQMPKKSSVSWNA 174
              A+ ++  M +     D++T  ALL   A    +       R   D   +      NA
Sbjct: 189 HNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHRIACDIRCESCVFVSNA 248

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +I+ Y K G +  A  +F  M  R++++WNSMI GY ++G  +EA+  F  ++  G+ P+
Sbjct: 249 LIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVEAISFFRKMVASGVRPN 308

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAV 292
            +T L  L   S   ++  G      M    F L   +     ++++Y + G +E++L +
Sbjct: 309 AITFLGLLLGCSHQGLVKEGVEHFEIMSSQ-FHLTPNVKHYGCMVDLYGRAGQLENSLEM 367

Query: 293 FKA 295
             A
Sbjct: 368 IYA 370



 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 123/234 (52%), Gaps = 14/234 (5%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           LVSWN++I C+ H    N AL ++++M +  +  D +TL  ++  C+ + A+  G  +H 
Sbjct: 173 LVSWNVMICCFSHVGLHNQALSMYKRMGNEGVCGDSYTLVALLSSCAHVSALNMGVMLHR 232

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
               I      FV ++L++MYAK G +  A  VF+ M  RDV++WNS+I GY  +G+   
Sbjct: 233 IACDIRCESCVFVSNALIDMYAKCGSLENAIGVFNGMRKRDVLTWNSMIIGYGVHGHGVE 292

Query: 126 AMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AMI 176
           A+  F +M +     +A T+  LL G +  G V+   E F+ M  +  ++ N      M+
Sbjct: 293 AISFFRKMVASGVRPNAITFLGLLLGCSHQGLVKEGVEHFEIMSSQFHLTPNVKHYGCMV 352

Query: 177 NGYMKSGKI-NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           + Y ++G++ N    ++      + + W +++   +++      +EL EV +K+
Sbjct: 353 DLYGRAGQLENSLEMIYASSCHEDPVLWRTLLGSCKIH----RNLELGEVAMKK 402


>AT3G05240.1 | Symbols: MEF19 | mitochondrial editing factor  19 |
           chr3:1493684-1495381 REVERSE LENGTH=565
          Length = 565

 Score =  329 bits (844), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 189/496 (38%), Positives = 280/496 (56%), Gaps = 23/496 (4%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++  WN +I  Y ++   + AL+ +++ML     PD FT P V+K CS L  +Q G  +
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           HG+V+K GF  + +V + L++MY   GE+    +VF+ +   +VV+W SLI G+  N   
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRF 189

Query: 124 EVAMKLFDEMPSRDA-FTWTALLDGLAKCGKVEAAREV-----------FDQMPKKSSVS 171
             A++ F EM S       T ++D L  CG+ +                FD    +S V 
Sbjct: 190 SDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPY-FQSKVG 248

Query: 172 WN-----AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
           +N     ++I+ Y K G +  AR LF  MP R L+SWNS+I+GY  NG   EA+ +F  +
Sbjct: 249 FNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDM 308

Query: 227 LKEGLMPSHVTILSALSA--VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
           L  G+ P  VT LS + A  + G + LG    IH+++ K  F  D  +  +L+ MY+K G
Sbjct: 309 LDLGIAPDKVTFLSVIRASMIQGCSQLGQS--IHAYVSKTGFVKDAAIVCALVNMYAKTG 366

Query: 285 SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVL 343
             ESA   F+ +  K    WT +I+GL  HG  ++AL +F  M+  G   P  IT++GVL
Sbjct: 367 DAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVL 426

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPN 403
            ACSH GLV+EG + F  M + + + PTVEHYGC+VDIL RAG  ++A+ ++++MP++PN
Sbjct: 427 YACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPN 486

Query: 404 KVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREM 463
             IW +LL+    H NLE+ +     + E +   +G Y LLSNIYA AG+W  V  +RE 
Sbjct: 487 VNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRES 546

Query: 464 MKERGVLKDAGCSIVE 479
           MK + V K  G S VE
Sbjct: 547 MKSKRVDKVLGHSSVE 562



 Score =  144 bits (364), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 183/383 (47%), Gaps = 25/383 (6%)

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGE---MGLARKVFDKMVDRDVVSWNSLID 115
           E  Q+HG ++K     +    S L++      E   +  AR VF+ +    V  WNS+I 
Sbjct: 21  ELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDCPSVYIWNSMIR 80

Query: 116 GYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS--- 168
           GY+ + N + A+  + EM     S D FT+  +L   +    ++    V   + K     
Sbjct: 81  GYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEV 140

Query: 169 --SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
              VS   +++ YM  G++N   ++F  +P  N+++W S+ISG+  N RF +A+E F  +
Sbjct: 141 NMYVS-TCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFREM 199

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD--------LDGVLGTSLIE 278
              G+  +   ++  L A      +  G+W H F+    FD         + +L TSLI+
Sbjct: 200 QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLID 259

Query: 279 MYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
           MY+KCG + +A  +F  +  + L  W +II G   +G A++AL +F++M  +G+ P  +T
Sbjct: 260 MYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVT 319

Query: 339 FIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
           F+ V+ A   +G    G +     +++   V        LV++  + G  + AK   E +
Sbjct: 320 FLSVIRASMIQGCSQLG-QSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDL 378

Query: 399 PMRPNKVIWMSLLS--SSRNHGN 419
             + + + W  ++   +S  HGN
Sbjct: 379 E-KKDTIAWTVVIIGLASHGHGN 400



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 144/299 (48%), Gaps = 34/299 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIK-----GCSRLH 55
           M + TLVSWN II+ Y  N  + +AL +F  ML   + PD  T   VI+     GCS+L 
Sbjct: 277 MPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQL- 335

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLID 115
               G+ IH YV K GF  D  +  +LVNMYAK G+   A+K F+ +  +D ++W  +I 
Sbjct: 336 ----GQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVII 391

Query: 116 GYARNGNVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMP----- 165
           G A +G+   A+ +F  M  +     D  T+  +L   +  G VE  +  F +M      
Sbjct: 392 GLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGL 451

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFE 224
           + +   +  M++   ++G+   A +L   MP + N+  W ++++G  ++    E +EL +
Sbjct: 452 EPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIH----ENLELTD 507

Query: 225 VLLKEGLMPSHV--TILSALSAVSGLAVLGNGRWIHSFMVKHCFD---LDGVLGTSLIE 278
            +      P  +   I   LS +   A    GRW    +++       +D VLG S +E
Sbjct: 508 RIRSMVAEPEELGSGIYVLLSNIYAKA----GRWADVKLIRESMKSKRVDKVLGHSSVE 562



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 142/313 (45%), Gaps = 19/313 (6%)

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA 244
           ++ AR +F  +   ++  WNSMI GY  +    +A+  ++ +L++G  P + T    L A
Sbjct: 57  LSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKA 116

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHW 304
            SGL  +  G  +H F+VK  F+++  + T L+ MY  CG +   L VF+ I    +  W
Sbjct: 117 CSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAW 176

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN 364
            ++I G   +     A+E F EM+  G+K +    + +L AC     +  G K F   + 
Sbjct: 177 GSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTG-KWFHGFLQ 235

Query: 365 EYKIVPTVEH--------YGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
                P  +            L+D+  + G L+ A+ + + MP R   V W S+++    
Sbjct: 236 GLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPER-TLVSWNSIITGYSQ 294

Query: 417 HGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAA--AGKWDKVSHVREMMKERGVLKD 472
           +G+ E       ++++    PD     T LS I A+   G       +   + + G +KD
Sbjct: 295 NGDAEEALCMFLDMLDLGIAPDKV---TFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKD 351

Query: 473 AG--CSIVEHRGK 483
           A   C++V    K
Sbjct: 352 AAIVCALVNMYAK 364



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 10/184 (5%)

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG---SIESALAVFK 294
           ILS L     L  L     +H  M+K     + +  + LI+  + C    ++  A +VF+
Sbjct: 9   ILSQLENCRSLVELNQ---LHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFE 65

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD- 353
           +I    +  W ++I G       D+AL  + EM R G  P   TF  VL ACS  GL D 
Sbjct: 66  SIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACS--GLRDI 123

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           +   C    + +      +    CL+ +    G +     + E +P + N V W SL+S 
Sbjct: 124 QFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIP-QWNVVAWGSLISG 182

Query: 414 SRNH 417
             N+
Sbjct: 183 FVNN 186


>AT4G21300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:11336479-11339052 FORWARD
           LENGTH=857
          Length = 857

 Score =  329 bits (843), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 178/527 (33%), Positives = 301/527 (57%), Gaps = 9/527 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   V+WN +IS YV +    ++L  F +M+   +LPD  T   ++   S+   ++  
Sbjct: 300 MSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYC 359

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQIH Y+++     D F+ S+L++ Y K   + +A+ +F +    DVV + ++I GY  N
Sbjct: 360 KQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHN 419

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN--- 173
           G    ++++F  +     S +  T  ++L  +     ++  RE+   + KK   +     
Sbjct: 420 GLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIG 479

Query: 174 -AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            A+I+ Y K G++NLA ++F ++  R+++SWNSMI+    +     A+++F  +   G+ 
Sbjct: 480 CAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGIC 539

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
              V+I +ALSA + L     G+ IH FM+KH    D    ++LI+MY+KCG++++A+ V
Sbjct: 540 YDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNV 599

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGVLNACSHKGL 351
           FK +  K +  W +II   G HG    +L LF EM  + G++P  ITF+ ++++C H G 
Sbjct: 600 FKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGD 659

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           VDEG + F  M  +Y I P  EHY C+VD+  RAG L +A   ++SMP  P+  +W +LL
Sbjct: 660 VDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLL 719

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
            + R H N+E+ E A+  L++ DP  +G Y L+SN +A A +W+ V+ VR +MKER V K
Sbjct: 720 GACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQK 779

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVP 518
             G S +E   + + F+ GD +HP++  IY+ L  +  +L+L G++P
Sbjct: 780 IPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIP 826



 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 216/429 (50%), Gaps = 14/429 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + + ++  WN IIS +V N   N AL  + +ML   + PD  T PC++K C  L   +  
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +   V  +G   ++FV SSL+  Y ++G++ +  K+FD+++ +D V WN +++GYA+ 
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAARE-----VFDQMPKKSSVS 171
           G ++  +K F  M     S +A T+  +L   A    ++   +     V   +  + S+ 
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK 277

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            N++++ Y K G+ + A +LF  M   + ++WN MISGY  +G   E++  F  ++  G+
Sbjct: 278 -NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           +P  +T  S L +VS    L   + IH ++++H   LD  L ++LI+ Y KC  +  A  
Sbjct: 337 LPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQN 396

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           +F    +  +  +TA+I G   +GL   +LE+F  + ++ + P+ IT + +L        
Sbjct: 397 IFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLA 456

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGC-LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           +  G +    +I   K      + GC ++D+  + G +  A  I E +  R + V W S+
Sbjct: 457 LKLGRELHGFIIK--KGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKR-DIVSWNSM 513

Query: 411 LSSSRNHGN 419
           ++      N
Sbjct: 514 ITRCAQSDN 522



 Score =  132 bits (332), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/314 (25%), Positives = 152/314 (48%), Gaps = 10/314 (3%)

Query: 44  LPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV 103
           L  +++ CS  + +++GKQ+H +++      D +    ++ MYA  G      K+F ++ 
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 104 DR--DVVSWNSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAA 157
            R   +  WNS+I  + RNG +  A+  + +M     S D  T+  L+         +  
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGI 157

Query: 158 REVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN 213
             + D +       +    +++I  Y++ GKI++  +LF ++  ++ + WN M++GY   
Sbjct: 158 DFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKC 217

Query: 214 GRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
           G     ++ F V+  + + P+ VT    LS  +   ++  G  +H  +V    D +G + 
Sbjct: 218 GALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIK 277

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            SL+ MYSKCG  + A  +F+ ++      W  +I G    GL +++L  F EM   G+ 
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVL 337

Query: 334 PHAITFIGVLNACS 347
           P AITF  +L + S
Sbjct: 338 PDAITFSSLLPSVS 351


>AT1G13410.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4601526-4603174 FORWARD
           LENGTH=474
          Length = 474

 Score =  327 bits (839), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 165/431 (38%), Positives = 253/431 (58%), Gaps = 2/431 (0%)

Query: 79  QSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDA 138
           Q  L  M    G +  A KVF +MV+++VV W S+I+GY  N ++  A + FD  P RD 
Sbjct: 31  QMFLFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDI 90

Query: 139 FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGR 198
             W  ++ G  + G +  AR +FDQMP +  +SWN ++ GY   G +    ++F  MP R
Sbjct: 91  VLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPER 150

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWI 257
           N+ SWN +I GY  NGR  E +  F+ ++ EG ++P+  T+   LSA + L     G+W+
Sbjct: 151 NVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWV 210

Query: 258 HSFMVKHCFD-LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
           H +     ++ +D  +  +LI+MY KCG+IE A+ VFK I  + L  W  +I GL  HG 
Sbjct: 211 HKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGH 270

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
             +AL LF EM+  G+ P  +TF+GVL AC H GLV++G   F+ M  ++ I+P +EH G
Sbjct: 271 GTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCG 330

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
           C+VD+L RAG L QA   I  MP++ + VIW +LL +S+ +  ++IGE A   LI+ +P 
Sbjct: 331 CVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPR 390

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQ 496
               + +LSNIY  AG++D  + ++  M++ G  K+AG S +E    L +F    + HP+
Sbjct: 391 NPANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPR 450

Query: 497 TKAIYAKLREM 507
           T+ +   LRE+
Sbjct: 451 TEELQRILREL 461



 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%), Gaps = 41/221 (18%)

Query: 75  DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP 134
           D  + +++++ Y + G M  AR +FD+M  RDV+SWN++++GYA  G++E   ++FD+MP
Sbjct: 89  DIVLWNTMISGYIEMGNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMP 148

Query: 135 SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV-----------------------S 171
            R+ F+W  L+ G A+ G+V      F +M  + SV                        
Sbjct: 149 ERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGK 208

Query: 172 W------------------NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN 213
           W                  NA+I+ Y K G I +A ++F  +  R+LISWN+MI+G   +
Sbjct: 209 WVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAH 268

Query: 214 GRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
           G   EA+ LF  +   G+ P  VT +  L A   + ++ +G
Sbjct: 269 GHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDG 309



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 133/260 (51%), Gaps = 13/260 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  + SWN +I  Y  N R ++ L  F++M+    ++P+  T+  V+  C++L A   
Sbjct: 147 MPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDF 206

Query: 60  GKQIHGYVLKIGFG-FDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           GK +H Y   +G+   D  V+++L++MY K G + +A +VF  +  RD++SWN++I+G A
Sbjct: 207 GKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLA 266

Query: 119 RNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV---- 170
            +G+   A+ LF EM     S D  T+  +L      G VE     F+ M    S+    
Sbjct: 267 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 326

Query: 171 -SWNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRF-LEAMELFEVLL 227
                +++   ++G +  A +   +MP + + + W +++   ++  +  +  + L E++ 
Sbjct: 327 EHCGCVVDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIK 386

Query: 228 KEGLMPSHVTILSALSAVSG 247
            E   P++  +LS +   +G
Sbjct: 387 LEPRNPANFVMLSNIYGDAG 406


>AT5G37570.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:14924494-14926146 REVERSE
           LENGTH=550
          Length = 550

 Score =  323 bits (827), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/475 (34%), Positives = 272/475 (57%), Gaps = 2/475 (0%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGKQ 62
           P    WN +I  Y +     + + +  +M+   L  PD +T P V+K CS    V+ G  
Sbjct: 72  PGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSS 131

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +HG VL+IGF  D  V +S V+ Y K  ++  ARKVF +M +R+ VSW +L+  Y ++G 
Sbjct: 132 VHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGE 191

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKS 182
           +E A  +FD MP R+  +W AL+DGL K G +  A+++FD+MPK+  +S+ +MI+GY K 
Sbjct: 192 LEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAKG 251

Query: 183 GKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL 242
           G +  AR LF +  G ++ +W+++I GY  NG+  EA ++F  +  + + P    ++  +
Sbjct: 252 GDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLM 311

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDG-VLGTSLIEMYSKCGSIESALAVFKAIANKKL 301
           SA S +        + S++ +         +  +LI+M +KCG ++ A  +F+ +  + L
Sbjct: 312 SACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDL 371

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
             + +++ G+ +HG   +A+ LF +M   G+ P  + F  +L  C    LV+EG + F++
Sbjct: 372 VSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFEL 431

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           M  +Y I+ + +HY C+V++L R G L++A  +I+SMP   +   W SLL     HGN E
Sbjct: 432 MRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTE 491

Query: 422 IGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           I E  A +L E +P + G Y LLSNIYAA  +W  V+H+R+ M E G+ K  G S
Sbjct: 492 IAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546



 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 188/440 (42%), Gaps = 109/440 (24%)

Query: 31  QMLHHDLLPDGFTLPCVIKGC-SRLHAVQEGKQIHGYVLKIGFGFDK-FVQSSLVNMYAK 88
           Q L H   P   +L  + K C S +H      QIH  +++ G   D+  +   + +  + 
Sbjct: 3   QRLSH---PSLLSLETLFKLCKSEIHL----NQIHARIIRKGLEQDQNLISIFISSSSSS 55

Query: 89  WGEMGLARKVFDKMVDRDVVSWNSLIDGY------------------------------- 117
              +  +  VF+++       WN LI GY                               
Sbjct: 56  SSSLSYSSSVFERVPSPGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPL 115

Query: 118 -----ARNGNVEVAMKL--------FDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM 164
                + NG V V   +        FD    +D    T+ +D   KC  + +AR+VF +M
Sbjct: 116 VMKVCSNNGQVRVGSSVHGLVLRIGFD----KDVVVGTSFVDFYGKCKDLFSARKVFGEM 171

Query: 165 PKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFE 224
           P++++VSW A++  Y+KSG++  A+ +F  MP RNL SWN+++ G   +G  + A +LF+
Sbjct: 172 PERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFD 231

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
            + K                                        D +  TS+I+ Y+K G
Sbjct: 232 EMPKR---------------------------------------DIISYTSMIDGYAKGG 252

Query: 285 SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
            + SA  +F+      +  W+A+I+G   +G  ++A ++F EM    +KP     +G+++
Sbjct: 253 DMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMS 312

Query: 345 ACSHKG---LVDEGNKCFDMMINEYK---IVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
           ACS  G   L ++ +      +N++    +VP       L+D+  + GH+ +A  + E M
Sbjct: 313 ACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPA------LIDMNAKCGHMDRAAKLFEEM 366

Query: 399 PMRPNKVIWMSLLSSSRNHG 418
           P R + V + S++     HG
Sbjct: 367 PQR-DLVSYCSMMEGMAIHG 385



 Score =  105 bits (262), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 152/331 (45%), Gaps = 29/331 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL-----LPDGFTLPCVIKGCSRLH 55
           M +   VSW  ++  YV +    +A  +F  M   +L     L DG      +    +L 
Sbjct: 171 MPERNAVSWTALVVAYVKSGELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLF 230

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLID 115
                + I  Y             +S+++ YAK G+M  AR +F++    DV +W++LI 
Sbjct: 231 DEMPKRDIISY-------------TSMIDGYAKGGDMVSARDLFEEARGVDVRAWSALIL 277

Query: 116 GYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREV----FDQMPKK 167
           GYA+NG    A K+F EM ++    D F    L+   ++ G  E   +V      +M K 
Sbjct: 278 GYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMGCFELCEKVDSYLHQRMNKF 337

Query: 168 SS-VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
           SS     A+I+   K G ++ A +LF +MP R+L+S+ SM+ G  ++G   EA+ LFE +
Sbjct: 338 SSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYCSMMEGMAIHGCGSEAIRLFEKM 397

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNG-RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           + EG++P  V     L       ++  G R+      K+         + ++ + S+ G 
Sbjct: 398 VDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFELMRKKYSILASPDHYSCIVNLLSRTGK 457

Query: 286 IESALAVFKAIA-NKKLGHWTAIIVGLGMHG 315
           ++ A  + K++        W +++ G  +HG
Sbjct: 458 LKEAYELIKSMPFEAHASAWGSLLGGCSLHG 488


>AT5G27110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:9538572-9540647 REVERSE
           LENGTH=691
          Length = 691

 Score =  321 bits (822), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/519 (35%), Positives = 286/519 (55%), Gaps = 13/519 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  + SWN +ISC+  +  +  AL LF +M      P+  +L   I  CSRL  ++ G
Sbjct: 168 MPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERG 227

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IH   +K GF  D++V S+LV+MY K   + +AR+VF KM  + +V+WNS+I GY   
Sbjct: 228 KEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAK 287

Query: 121 GNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK---SSVS 171
           G+ +  +++ + M      PS+   T T++L   ++   +   + +   + +    + + 
Sbjct: 288 GDSKSCVEILNRMIIEGTRPSQT--TLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIY 345

Query: 172 WN-AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
            N ++I+ Y K G+ NLA  +F +       SWN MIS Y   G + +A+E+++ ++  G
Sbjct: 346 VNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVG 405

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P  VT  S L A S LA L  G+ IH  + +   + D +L ++L++MYSKCG+ + A 
Sbjct: 406 VKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAF 465

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F +I  K +  WT +I   G HG   +AL  F EM++ G+KP  +T + VL+AC H G
Sbjct: 466 RIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAG 525

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP-MRPNKVIWMS 409
           L+DEG K F  M ++Y I P +EHY C++DIL RAG L +A  II+  P    N  +  +
Sbjct: 526 LIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLST 585

Query: 410 LLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           L S+   H    +G+  A  L+E  PD    Y +L N+YA+   WD    VR  MKE G+
Sbjct: 586 LFSACCLHLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGL 645

Query: 470 LKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMS 508
            K  GCS +E   K+  F   D+SH + + +Y  L  +S
Sbjct: 646 RKKPGCSWIEMSDKVCHFFAEDRSHLRAENVYECLALLS 684



 Score =  196 bits (497), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 132/451 (29%), Positives = 212/451 (47%), Gaps = 73/451 (16%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           WN ++S Y  N   +D L +F+++L+  + +PD FT P VIK    L     G+ IH  V
Sbjct: 74  WNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLV 133

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           +K G+  D  V SSLV MYAK+     + +VFD+M +RDV SWN++I  + ++G  E A+
Sbjct: 134 VKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKAL 193

Query: 128 KLFDEMPSR---------------------------------------DAFTWTALLDGL 148
           +LF  M S                                        D +  +AL+D  
Sbjct: 194 ELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMY 253

Query: 149 AKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMIS 208
            KC  +E AREVF +MP+KS V+WN+MI GY+  G                         
Sbjct: 254 GKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSK---------------------- 291

Query: 209 GYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL 268
                      +E+   ++ EG  PS  T+ S L A S    L +G++IH ++++   + 
Sbjct: 292 ---------SCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNA 342

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
           D  +  SLI++Y KCG    A  VF          W  +I      G   +A+E++ +M 
Sbjct: 343 DIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMV 402

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHL 388
            +G+KP  +TF  VL ACS    +++G +   + I+E ++         L+D+  + G+ 
Sbjct: 403 SVGVKPDVVTFTSVLPACSQLAALEKGKQ-IHLSISESRLETDELLLSALLDMYSKCGNE 461

Query: 389 QQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           ++A  I  S+P + + V W  ++S+  +HG 
Sbjct: 462 KEAFRIFNSIP-KKDVVSWTVMISAYGSHGQ 491



 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 177/373 (47%), Gaps = 20/373 (5%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGYAR 119
           K +H  +L +G   D  +  SL+N+Y    +   AR VF+   +  DV  WNSL+ GY++
Sbjct: 24  KLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIRSDVYIWNSLMSGYSK 83

Query: 120 NGNVEVAMKLFDEMPS-----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--- 171
           N      +++F  + +      D+FT+  ++      G+    R +   + K   V    
Sbjct: 84  NSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKSGYVCDVV 143

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             ++++  Y K      + Q+F +MP R++ SWN++IS +  +G   +A+ELF  +   G
Sbjct: 144 VASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSG 203

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             P+ V++  A+SA S L  L  G+ IH   VK  F+LD  + ++L++MY KC  +E A 
Sbjct: 204 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAR 263

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF+ +  K L  W ++I G    G +   +E+   M   G +P   T   +L ACS   
Sbjct: 264 EVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSR 323

Query: 351 LVDEGNKCFDMMINEYKIVPTVE---HYGC-LVDILCRAGHLQQAKNIIESMPMRPNKVI 406
            +  G       I+ Y I   V    +  C L+D+  + G    A+ +  S   +     
Sbjct: 324 NLLHGK-----FIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVF-SKTQKDVAES 377

Query: 407 WMSLLSSSRNHGN 419
           W  ++SS  + GN
Sbjct: 378 WNVMISSYISVGN 390


>AT2G37310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15665102-15667075 REVERSE
           LENGTH=657
          Length = 657

 Score =  320 bits (821), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/543 (33%), Positives = 280/543 (51%), Gaps = 49/543 (9%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLL------PDGFTLPCVIK---GCSRLHAVQ 58
           S+N ++  Y       DA  LF   +           PD  ++ CV+K   GC       
Sbjct: 90  SYNALLIAYTSREMYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGS 149

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
             +Q+HG+V++ GF  D FV + ++  Y K   +  ARKVFD+M +RDVVSWNS+I GY+
Sbjct: 150 LARQVHGFVIRGGFDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYS 209

Query: 119 RNGNVEVAMKLFDEMPSRDAFT-------------------------------------- 140
           ++G+ E   K++  M +   F                                       
Sbjct: 210 QSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIFGLEVHKKMIENHIQMDL 269

Query: 141 --WTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGR 198
               A++   AKCG ++ AR +FD+M +K SV++ A+I+GYM  G +  A  LF +M   
Sbjct: 270 SLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMAHGLVKEAMALFSEMESI 329

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
            L +WN+MISG   N    E +  F  +++ G  P+ VT+ S L +++  + L  G+ IH
Sbjct: 330 GLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGGKEIH 389

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
           +F +++  D +  + TS+I+ Y+K G +  A  VF    ++ L  WTAII    +HG +D
Sbjct: 390 AFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVHGDSD 449

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL 378
            A  LF +M+ +G KP  +T   VL+A +H G  D     FD M+ +Y I P VEHY C+
Sbjct: 450 SACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEHYACM 509

Query: 379 VDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDAT 438
           V +L RAG L  A   I  MP+ P   +W +LL+ +   G+LEI  +A   L E +P+ T
Sbjct: 510 VSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEMEPENT 569

Query: 439 GCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTK 498
           G YT+++N+Y  AG+W++   VR  MK  G+ K  G S +E    L  FI  D S  ++K
Sbjct: 570 GNYTIMANLYTQAGRWEEAEMVRNKMKRIGLKKIPGTSWIETEKGLRSFIAKDSSCERSK 629

Query: 499 AIY 501
            +Y
Sbjct: 630 EMY 632



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/439 (23%), Positives = 190/439 (43%), Gaps = 77/439 (17%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLH-HDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +VSWN +IS Y  +    D   +++ ML   D  P+G T+  V + C +   +  
Sbjct: 193 MSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQACGQSSDLIF 252

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G ++H  +++     D  + ++++  YAK G +  AR +FD+M ++D V++ ++I GY  
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVS-- 171
           +G V+ AM LF EM S    TW A++ GL +    E     F +M      P   ++S  
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSL 372

Query: 172 -------------------------------WNAMINGYMKSGKINLARQLFGQMPGRNL 200
                                            ++I+ Y K G +  A+++F     R+L
Sbjct: 373 LPSLTYSSNLKGGKEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSL 432

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           I+W ++I+ Y ++G    A  LF+ +   G  P  VT+ + LSA    A  G+     S 
Sbjct: 433 IAWTAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSA---FAHSGD-----SD 484

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
           M +H FD       S++  Y     +E               H+  ++  L   G    A
Sbjct: 485 MAQHIFD-------SMLTKYDIEPGVE---------------HYACMVSVLSRAGKLSDA 522

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP-TVEHYGCLV 379
           +E   +M    + P A  +  +LN  S  G ++      D +   +++ P    +Y  + 
Sbjct: 523 MEFISKMP---IDPIAKVWGALLNGASVLGDLEIARFACDRL---FEMEPENTGNYTIMA 576

Query: 380 DILCRAGHLQQAKNIIESM 398
           ++  +AG  ++A+ +   M
Sbjct: 577 NLYTQAGRWEEAEMVRNKM 595



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 145/295 (49%), Gaps = 27/295 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    L +WN +IS  + N+   + +  FR+M+     P+  TL  ++   +    ++ G
Sbjct: 326 MESIGLSTWNAMISGLMQNNHHEEVINSFREMIRCGSRPNTVTLSSLLPSLTYSSNLKGG 385

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IH + ++ G   + +V +S+++ YAK G +  A++VFD   DR +++W ++I  YA +
Sbjct: 386 KEIHAFAIRNGADNNIYVTTSIIDNYAKLGFLLGAQRVFDNCKDRSLIAWTAIITAYAVH 445

Query: 121 GNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           G+ + A  LFD+M       D  T TA+L   A  G  + A+ +FD M  K  +      
Sbjct: 446 GDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLTKYDIEPGVEH 505

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLIS-WNSMISGYQLNGRFLEAM----ELFEVL 226
           +  M++   ++GK++ A +   +MP   +   W ++++G  + G    A      LFE+ 
Sbjct: 506 YACMVSVLSRAGKLSDAMEFISKMPIDPIAKVWGALLNGASVLGDLEIARFACDRLFEM- 564

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD---LDGVLGTSLIE 278
             E     + TI++ L   +       GRW  + MV++      L  + GTS IE
Sbjct: 565 --EPENTGNYTIMANLYTQA-------GRWEEAEMVRNKMKRIGLKKIPGTSWIE 610



 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 136/340 (40%), Gaps = 78/340 (22%)

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           Q+H  ++      D F+ S L++ Y +      A  VFD++  R+  S+N+L+  Y    
Sbjct: 43  QLHARIVVFSIKPDNFLASKLISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSRE 102

Query: 122 NVEVAMKLF----------------DEMP------------------------------- 134
               A  LF                D +                                
Sbjct: 103 MYFDAFSLFLSWIGSSCYSSDAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGG 162

Query: 135 -SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFG 193
              D F    ++    KC  +E+AR+VFD+M ++  VSWN+MI+GY +SG     ++++ 
Sbjct: 163 FDSDVFVGNGMITYYTKCDNIESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYK 222

Query: 194 QMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN 253
            M                              L      P+ VT++S   A    + L  
Sbjct: 223 AM------------------------------LACSDFKPNGVTVISVFQACGQSSDLIF 252

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
           G  +H  M+++   +D  L  ++I  Y+KCGS++ A A+F  ++ K    + AII G   
Sbjct: 253 GLEVHKKMIENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEKDSVTYGAIISGYMA 312

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
           HGL  +A+ LF EM  IG+        G++    H+ +++
Sbjct: 313 HGLVKEAMALFSEMESIGLSTWNAMISGLMQNNHHEEVIN 352



 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 115/254 (45%), Gaps = 12/254 (4%)

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF------EVLLK 228
           +I+ Y +  +   A  +F ++  RN  S+N+++  Y     + +A  LF           
Sbjct: 63  LISFYTRQDRFRQALHVFDEITVRNAFSYNALLIAYTSREMYFDAFSLFLSWIGSSCYSS 122

Query: 229 EGLMPSHVTILSALSAVSGLAV--LGN-GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +   P  ++I   L A+SG     LG+  R +H F+++  FD D  +G  +I  Y+KC +
Sbjct: 123 DAARPDSISISCVLKALSGCDDFWLGSLARQVHGFVIRGGFDSDVFVGNGMITYYTKCDN 182

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLN 344
           IESA  VF  ++ + +  W ++I G    G  +   +++  M      KP+ +T I V  
Sbjct: 183 IESARKVFDEMSERDVVSWNSMISGYSQSGSFEDCKKMYKAMLACSDFKPNGVTVISVFQ 242

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
           AC     +  G +    MI E  I   +     ++    + G L  A+ + + M  + + 
Sbjct: 243 ACGQSSDLIFGLEVHKKMI-ENHIQMDLSLCNAVIGFYAKCGSLDYARALFDEMSEK-DS 300

Query: 405 VIWMSLLSSSRNHG 418
           V + +++S    HG
Sbjct: 301 VTYGAIISGYMAHG 314


>AT4G39530.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:18374736-18377240 REVERSE
           LENGTH=834
          Length = 834

 Score =  319 bits (817), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 291/523 (55%), Gaps = 12/523 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    ++SW  ++S Y  N    +A+ LF  M    L PD +    ++  C+ LHA+  G
Sbjct: 310 MPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFG 369

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+H Y +K   G D +V +SL++MYAK   +  ARKVFD     DVV +N++I+GY+R 
Sbjct: 370 TQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRL 429

Query: 121 GN---VEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
           G    +  A+ +F +M  R       T+ +LL   A    +  ++++   M K       
Sbjct: 430 GTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDI 489

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            + +A+I+ Y     +  +R +F +M  ++L+ WNSM +GY       EA+ LF  L   
Sbjct: 490 FAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLS 549

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
              P   T  + ++A   LA +  G+  H  ++K   + +  +  +L++MY+KCGS E A
Sbjct: 550 RERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDA 609

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
              F + A++ +  W ++I     HG   +AL++  +M   G++P+ ITF+GVL+ACSH 
Sbjct: 610 HKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHA 669

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
           GLV++G K F++M+  + I P  EHY C+V +L RAG L +A+ +IE MP +P  ++W S
Sbjct: 670 GLVEDGLKQFELML-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRS 728

Query: 410 LLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           LLS     GN+E+ E+AA   I +DP  +G +T+LSNIYA+ G W +   VRE MK  GV
Sbjct: 729 LLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGV 788

Query: 470 LKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
           +K+ G S +    +++ F+  DKSH +   IY  L ++  +++
Sbjct: 789 VKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIR 831



 Score =  182 bits (461), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 217/430 (50%), Gaps = 15/430 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + + + V+W  +IS  V   RS  +L LF Q++  +++PDG+ L  V+  CS L  ++ G
Sbjct: 209 LPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGG 268

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQIH ++L+ G   D  + + L++ Y K G +  A K+F+ M +++++SW +L+ GY +N
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVSW 172
              + AM+LF  M       D +  +++L   A    +    +V     K +    S   
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG---RFLEAMELFEVLLKE 229
           N++I+ Y K   +  AR++F      +++ +N+MI GY   G      EA+ +F  +   
Sbjct: 389 NSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFR 448

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
            + PS +T +S L A + L  LG  + IH  M K+  +LD   G++LI++YS C  ++ +
Sbjct: 449 LIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDS 508

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
             VF  +  K L  W ++  G       ++AL LF+E++    +P   TF  ++ A  + 
Sbjct: 509 RLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNL 568

Query: 350 GLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
             V  G +    ++    +  P + +   L+D+  + G  + A    +S   R + V W 
Sbjct: 569 ASVQLGQEFHCQLLKRGLECNPYITN--ALLDMYAKCGSPEDAHKAFDSAASR-DVVCWN 625

Query: 409 SLLSSSRNHG 418
           S++SS  NHG
Sbjct: 626 SVISSYANHG 635



 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 215/428 (50%), Gaps = 20/428 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLH-HDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  LVSW+ ++S   H+    ++L++F +        P+ + L   I+ CS L     
Sbjct: 105 MPERNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDG--R 162

Query: 60  GK----QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLID 115
           G+    Q+  +++K GF  D +V + L++ Y K G +  AR VFD + ++  V+W ++I 
Sbjct: 163 GRWMVFQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMIS 222

Query: 116 GYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK---- 167
           G  + G   V+++LF ++       D +  + +L   +    +E  +++   + +     
Sbjct: 223 GCVKMGRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEM 282

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
            +   N +I+ Y+K G++  A +LF  MP +N+ISW +++SGY+ N    EAMELF  + 
Sbjct: 283 DASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMS 342

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           K GL P      S L++ + L  LG G  +H++ +K     D  +  SLI+MY+KC  + 
Sbjct: 343 KFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLT 402

Query: 288 SALAVFKAIANKKLGHWTAIIVG---LGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
            A  VF   A   +  + A+I G   LG      +AL +F +MR   ++P  +TF+ +L 
Sbjct: 403 DARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLR 462

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
           A +    +    +   +M  +Y +   +     L+D+      L+ ++ + + M ++ + 
Sbjct: 463 ASASLTSLGLSKQIHGLMF-KYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVK-DL 520

Query: 405 VIWMSLLS 412
           VIW S+ +
Sbjct: 521 VIWNSMFA 528



 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 199/406 (49%), Gaps = 49/406 (12%)

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +HG ++  G   D ++ + L+N+Y++ G M  ARKVF+KM +R++VSW++++     +G 
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 123 VEVAMKLFDEM--PSRDAFTWTALLDGLAKCGKVEA-AREVFDQMPK---KSSVSWNA-- 174
            E ++ +F E     +D+     L   +  C  ++   R +  Q+     KS    +   
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVYV 185

Query: 175 ---MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
              +I+ Y+K G I+ AR +F  +P ++ ++W +MISG    GR   +++LF  L+++ +
Sbjct: 186 GTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNV 245

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           +P    + + LSA S L  L  G+ IH+ ++++  ++D  L   LI+ Y KCG + +A  
Sbjct: 246 VPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHK 305

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH--- 348
           +F  + NK +  WT ++ G   + L  +A+ELF  M + G+KP       +L +C+    
Sbjct: 306 LFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHA 365

Query: 349 -----------------------KGLVDEGNKCFDMMINEYKI-----VPTVEHYGCLVD 380
                                    L+D   KC D + +  K+        V  +  +++
Sbjct: 366 LGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKC-DCLTDARKVFDIFAAADVVLFNAMIE 424

Query: 381 ILCRAG---HLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNL 420
              R G    L +A NI   M    +RP+ + ++SLL +S +  +L
Sbjct: 425 GYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSL 470


>AT2G42920.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:17858705-17860384 FORWARD
           LENGTH=559
          Length = 559

 Score =  318 bits (816), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/495 (34%), Positives = 284/495 (57%), Gaps = 42/495 (8%)

Query: 52  SRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMY-AKWGEMGLARKVFDKMVDRDVVSW 110
           ++   ++E KQIH  ++K G   D    S ++    A   +M  A  VF ++  ++   W
Sbjct: 33  TQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVW 92

Query: 111 NSLIDGYARNGNVEVAMKLFDEM--------PSR-------------------------- 136
           N++I G++R+   E+A+ +F +M        P R                          
Sbjct: 93  NTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMV 152

Query: 137 -------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLAR 189
                  D+F    +L     CG +  A  +F  M     V+WN+MI G+ K G I+ A+
Sbjct: 153 IKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQ 212

Query: 190 QLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLA 249
            LF +MP RN +SWNSMISG+  NGRF +A+++F  + ++ + P   T++S L+A + L 
Sbjct: 213 NLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLG 272

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIV 309
               GRWIH ++V++ F+L+ ++ T+LI+MY KCG IE  L VF+    K+L  W ++I+
Sbjct: 273 ASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMIL 332

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIV 369
           GL  +G  ++A++LF E+ R G++P +++FIGVL AC+H G V   ++ F +M  +Y I 
Sbjct: 333 GLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIE 392

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHN 429
           P+++HY  +V++L  AG L++A+ +I++MP+  + VIW SLLS+ R  GN+E+ + AA  
Sbjct: 393 PSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKC 452

Query: 430 LIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIV 489
           L + DPD T  Y LLSN YA+ G +++    R +MKER + K+ GCS +E   +++ FI 
Sbjct: 453 LKKLDPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFIS 512

Query: 490 GDKSHPQTKAIYAKL 504
              +HP++  IY+ L
Sbjct: 513 CGGTHPKSAEIYSLL 527


>AT1G71490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26933326-26935371 REVERSE
           LENGTH=681
          Length = 681

 Score =  317 bits (813), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/550 (33%), Positives = 291/550 (52%), Gaps = 44/550 (8%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           + WN++I+ Y  N    + +  +++M+   + PD FT P V+K C     V  G+ +HG 
Sbjct: 110 LPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGS 169

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           +    +    +V ++L++MY ++  MG+AR++FD+M +RD VSWN++I+ YA  G    A
Sbjct: 170 IEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEA 229

Query: 127 MKLFDEM----PSRDAFTW--------------------------------TALLDGLAK 150
            +LFD+M          TW                                 A++ GL  
Sbjct: 230 FELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKA 289

Query: 151 CGKVEAAR--EVFDQMPKKSSVSW-----NAMINGYMKSGKINLARQLFGQMPGRNLISW 203
           C  + A R  +    +   SS        N +I  Y K   +  A  +F Q    +L +W
Sbjct: 290 CSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTW 349

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           NS+ISGY    +  EA  L   +L  G  P+ +T+ S L   + +A L +G+  H ++++
Sbjct: 350 NSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILR 409

Query: 264 H-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALE 322
             CF    +L  SL+++Y+K G I +A  V   ++ +    +T++I G G  G    AL 
Sbjct: 410 RKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALA 469

Query: 323 LFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDIL 382
           LF EM R G+KP  +T + VL+ACSH  LV EG + F  M  EY I P ++H+ C+VD+ 
Sbjct: 470 LFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLY 529

Query: 383 CRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYT 442
            RAG L +AK+II +MP +P+   W +LL++   HGN +IG++AA  L+E  P+  G Y 
Sbjct: 530 GRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYV 589

Query: 443 LLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYA 502
           L++N+YAAAG W K++ VR +M++ GV KD GC+ ++     + F VGD S P+    Y 
Sbjct: 590 LIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYP 649

Query: 503 KLREMSKKLK 512
            L  +++ +K
Sbjct: 650 LLDGLNQLMK 659



 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 182/418 (43%), Gaps = 50/418 (11%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD 106
           ++  C  + A   G Q+H + +  G  +   +   LV  Y+ +     A+ + +      
Sbjct: 49  LLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILH 108

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFD 162
            + WN LI  YA+N   E  +  +  M S+    DAFT+ ++L    +   V   R V  
Sbjct: 109 PLPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHG 168

Query: 163 QMP----KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLE 218
            +     K S    NA+I+ Y +   + +AR+LF +M  R+ +SWN++I+ Y   G + E
Sbjct: 169 SIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSE 228

Query: 219 AMELFEVLLKEGLMPSHVT-----------------------------------ILSALS 243
           A ELF+ +   G+  S +T                                   ++  L 
Sbjct: 229 AFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLK 288

Query: 244 AVSGLAVLGNGRWIHSFMVKHCFD-LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG 302
           A S +  +  G+ IH   +   +D +D V  T LI MYSKC  +  AL VF+      L 
Sbjct: 289 ACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNT-LITMYSKCKDLRHALIVFRQTEENSLC 347

Query: 303 HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK--CFD 360
            W +II G      +++A  L  EM   G +P++IT   +L  C+    +  G +  C+ 
Sbjct: 348 TWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYI 407

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           +    +K    +  +  LVD+  ++G +  AK + + M  R ++V + SL+    N G
Sbjct: 408 LRRKCFKDYTML--WNSLVDVYAKSGKIVAAKQVSDLMSKR-DEVTYTSLIDGYGNQG 462



 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 168/340 (49%), Gaps = 18/340 (5%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           ++++WN+I    +       AL L  +M +     D   +   +K CS + A++ GK+IH
Sbjct: 244 SVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIH 303

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           G  +   +     V+++L+ MY+K  ++  A  VF +  +  + +WNS+I GYA+    E
Sbjct: 304 GLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSE 363

Query: 125 VAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-----SVSWNAM 175
            A  L  EM       ++ T  ++L   A+   ++  +E    + ++      ++ WN++
Sbjct: 364 EASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSL 423

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           ++ Y KSGKI  A+Q+   M  R+ +++ S+I GY   G    A+ LF+ + + G+ P H
Sbjct: 424 VDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDH 483

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHC-FDLDGVLG--TSLIEMYSKCGSIESALAV 292
           VT+++ LSA S   ++  G  +  FM   C + +   L   + ++++Y + G +  A  +
Sbjct: 484 VTVVAVLSACSHSKLVHEGERL--FMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDI 541

Query: 293 FKAIANKKLG-HWTAIIVGLGMHG---LADQALELFMEMR 328
              +  K  G  W  ++    +HG   +   A E  +EM+
Sbjct: 542 IHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMK 581


>AT5G52850.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:21414935-21417616 REVERSE
           LENGTH=893
          Length = 893

 Score =  317 bits (813), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 189/606 (31%), Positives = 314/606 (51%), Gaps = 23/606 (3%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           W  ++S +V N R+ +A+  F +M    L P+ FT   ++  CS + ++  GKQIH   +
Sbjct: 293 WTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTI 352

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGL-ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           K+GF     V ++LV+MY K     + A +VF  MV  +VVSW +LI G   +G V+   
Sbjct: 353 KVGFEDSTDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCF 412

Query: 128 KLFDEMPSRDAFTWTALLDG-LAKCGKVEAAREVFD-------QMPKKSSVSWNAMINGY 179
            L  EM  R+       L G L  C K+   R V +       +      V  N++++ Y
Sbjct: 413 GLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAY 472

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
             S K++ A  +   M  R+ I++ S+++ +   G+   A+ +   +  +G+    +++ 
Sbjct: 473 ASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLP 532

Query: 240 SALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK 299
             +SA + L  L  G+ +H + VK  F     +  SL++MYSKCGS+E A  VF+ IA  
Sbjct: 533 GFISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATP 592

Query: 300 KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCF 359
            +  W  ++ GL  +G    AL  F EMR    +P ++TF+ +L+ACS+  L D G + F
Sbjct: 593 DVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSACSNGRLTDLGLEYF 652

Query: 360 DMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
            +M   Y I P VEHY  LV IL RAG L++A  ++E+M ++PN +I+ +LL + R  GN
Sbjct: 653 QVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFKTLLRACRYRGN 712

Query: 420 LEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVE 479
           L +GE  A+  +   P     Y LL+++Y  +GK +     R +M E+ + K  G S VE
Sbjct: 713 LSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVE 772

Query: 480 HRGKLNRFIVGDKSH-PQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXX 538
            +GK++ F+  D +   +T  IYA++  + +++K  G     ++                
Sbjct: 773 VQGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFGSPYRGNE-------------NAS 819

Query: 539 XXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFK 598
               + A+ +G +      P+ ++KN  +C DCH    +L+ +  ++I VRD ++ H FK
Sbjct: 820 FHSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFK 879

Query: 599 NGTCSC 604
           NG CSC
Sbjct: 880 NGECSC 885



 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 209/436 (47%), Gaps = 20/436 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M   T+ +W ++IS +  +     AL LF +M+     P+ FT   V++ C+ L  +  G
Sbjct: 84  MSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYG 143

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            ++HG V+K GF  +  V SSL ++Y+K G+   A ++F  + + D +SW  +I      
Sbjct: 144 GRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGA 203

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLA----KCGKVEAAREVFDQMPKKSSVSW 172
                A++ + EM       + FT+  LL   +    + GK   +  +   +P  + V  
Sbjct: 204 RKWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLGLEFGKTIHSNIIVRGIP-LNVVLK 262

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            ++++ Y +  K+  A ++      +++  W S++SG+  N R  EA+  F  +   GL 
Sbjct: 263 TSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQ 322

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE-SALA 291
           P++ T  + LS  S +  L  G+ IHS  +K  F+    +G +L++MY KC + E  A  
Sbjct: 323 PNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFEDSTDVGNALVDMYMKCSASEVEASR 382

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF A+ +  +  WT +I+GL  HG       L MEM +  ++P+ +T  GVL ACS    
Sbjct: 383 VFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRH 442

Query: 352 VDEGNKCFDMMINEYKIVPTVEHY----GCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           V        + I+ Y +   V+        LVD    +  +  A N+I SM  R N + +
Sbjct: 443 VRR-----VLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDN-ITY 496

Query: 408 MSLLSSSRNHGNLEIG 423
            SL++     G  E+ 
Sbjct: 497 TSLVTRFNELGKHEMA 512



 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 193/386 (50%), Gaps = 20/386 (5%)

Query: 49  KGCSRLHAVQE------GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM 102
           K C R+ +  E      G  IH  V+K G   +  + ++L+++Y K   +  ARK+FD+M
Sbjct: 25  KSCIRILSFCESNSSRIGLHIHCPVIKFGLLENLDLCNNLLSLYLKTDGIWNARKLFDEM 84

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAR 158
             R V +W  +I  + ++     A+ LF+EM +     + FT+++++   A    +    
Sbjct: 85  SHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSCAGLRDISYGG 144

Query: 159 EVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
            V   + K     +SV  +++ + Y K G+   A +LF  +   + ISW  MIS      
Sbjct: 145 RVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGAR 204

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
           ++ EA++ +  ++K G+ P+  T +  L A S L  L  G+ IHS ++     L+ VL T
Sbjct: 205 KWREALQFYSEMVKAGVPPNEFTFVKLLGASSFLG-LEFGKTIHSNIIVRGIPLNVVLKT 263

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           SL++ YS+   +E A+ V  +   + +  WT+++ G   +  A +A+  F+EMR +G++P
Sbjct: 264 SLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQP 323

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDIL--CRAGHLQQAK 392
           +  T+  +L+ CS    +D G +     I +     + +    LVD+   C A  + +A 
Sbjct: 324 NNFTYSAILSLCSAVRSLDFGKQIHSQTI-KVGFEDSTDVGNALVDMYMKCSASEV-EAS 381

Query: 393 NIIESMPMRPNKVIWMSLLSSSRNHG 418
            +  +M + PN V W +L+    +HG
Sbjct: 382 RVFGAM-VSPNVVSWTTLILGLVDHG 406



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 177/401 (44%), Gaps = 45/401 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M  P +VSW  +I   V +    D   L  +M+  ++ P+  TL  V++ CS+L  V+  
Sbjct: 387 MVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRV 446

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            +IH Y+L+     +  V +SLV+ YA   ++  A  V   M  RD +++ SL+  +   
Sbjct: 447 LEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNEL 506

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSW 172
           G  E+A+ + + M       D  +    +   A  G +E  + +     K     ++   
Sbjct: 507 GKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALETGKHLHCYSVKSGFSGAASVL 566

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N++++ Y K G +  A+++F ++   +++SWN ++SG   NG    A+  FE +  +   
Sbjct: 567 NSLVDMYSKCGSLEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETE 626

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P  VT L  LSA S      NGR                LG    ++  K  +IE     
Sbjct: 627 PDSVTFLILLSACS------NGRLTD-------------LGLEYFQVMKKIYNIE----- 662

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
                  ++ H+  ++  LG  G  ++A  +   M    +KP+A+ F  +L AC ++G +
Sbjct: 663 ------PQVEHYVHLVGILGRAGRLEEATGVVETMH---LKPNAMIFKTLLRACRYRGNL 713

Query: 353 DEGNKCFDMMINEYKIVPTVEH-YGCLVDILCRAGHLQQAK 392
             G    DM      + P+    Y  L D+   +G  + A+
Sbjct: 714 SLGE---DMANKGLALAPSDPALYILLADLYDESGKPELAQ 751


>AT2G35030.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14761080-14762963 REVERSE
           LENGTH=627
          Length = 627

 Score =  317 bits (812), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 168/477 (35%), Positives = 278/477 (58%), Gaps = 34/477 (7%)

Query: 80  SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAF 139
           +++++ YA+ G +  A ++FD+M +R++VSWNS++    + G ++ AM LF+ MP RD  
Sbjct: 144 NTMIDGYAQSGRIDKALELFDEMPERNIVSWNSMVKALVQRGRIDEAMNLFERMPRRDVV 203

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLF------- 192
           +WTA++DGLAK GKV+ AR +FD MP+++ +SWNAMI GY ++ +I+ A QLF       
Sbjct: 204 SWTAMVDGLAKNGKVDEARRLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERD 263

Query: 193 ------------------------GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
                                    +MP +N+ISW +MI+GY  N    EA+ +F  +L+
Sbjct: 264 FASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLR 323

Query: 229 EG-LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +G + P+  T +S LSA S LA L  G+ IH  + K     + ++ ++L+ MYSK G + 
Sbjct: 324 DGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELI 383

Query: 288 SALAVFKA--IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           +A  +F    +  + L  W ++I     HG   +A+E++ +MR+ G KP A+T++ +L A
Sbjct: 384 AARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFA 443

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV 405
           CSH GLV++G + F  ++ +  +    EHY CLVD+  RAG L+   N I     R ++ 
Sbjct: 444 CSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRS 503

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
            + ++LS+   H  + I +     ++E   D  G Y L+SNIYAA GK ++ + +R  MK
Sbjct: 504 FYGAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMK 563

Query: 466 ERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQ 522
           E+G+ K  GCS V+   + + F+VGDKSHPQ +A+ + L ++  K++   +V   ++
Sbjct: 564 EKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMRKNKNVTSDAE 620



 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 218/462 (47%), Gaps = 39/462 (8%)

Query: 82  LVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR-DAFT 140
           L+    K G++  ARK+FD + +RDVV+W  +I GY + G++  A +LFD + SR +  T
Sbjct: 52  LIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVT 111

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
           WTA++ G  +  ++  A  +F +MP+++ VSWN MI+GY +SG+I+ A +LF +MP RN+
Sbjct: 112 WTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNI 171

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           +SWNSM+      GR  EAM LFE       MP    ++S  + V GLA   NG+   + 
Sbjct: 172 VSWNSMVKALVQRGRIDEAMNLFE------RMPRR-DVVSWTAMVDGLA--KNGKVDEAR 222

Query: 261 MVKHCFDLDGVLG-TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
            +  C     ++   ++I  Y++   I+ A  +F+ +  +    W  +I G   +   ++
Sbjct: 223 RLFDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNK 282

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           A  LF  M     + + I++  ++         +E    F  M+ +  + P V   G  V
Sbjct: 283 ACGLFDRM----PEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNV---GTYV 335

Query: 380 DILCRAGHL------QQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
            IL     L      QQ   +I     + N+++  +LL+     G L        N +  
Sbjct: 336 SILSACSDLAGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVC 395

Query: 434 DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA--------GCS---IVEHRG 482
             D     ++++ +YA  G   +   +   M++ G    A         CS   +VE   
Sbjct: 396 QRDLISWNSMIA-VYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGM 454

Query: 483 KLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVL 524
           +  + +V D+S P  +  Y  L ++  +   AG + D +  +
Sbjct: 455 EFFKDLVRDESLPLREEHYTCLVDLCGR---AGRLKDVTNFI 493



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 166/370 (44%), Gaps = 57/370 (15%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SWN +I+ Y  N+R ++A  LF+ M   D                        
Sbjct: 228 MPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFAS--------------------- 266

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
                              ++++  + +  EM  A  +FD+M +++V+SW ++I GY  N
Sbjct: 267 ------------------WNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVEN 308

Query: 121 GNVEVAMKLFDEMPSRDAF------TWTALLDGLAKCGKVEAAREVFDQMPK----KSSV 170
              E A+ +F +M  RD        T+ ++L   +    +   +++   + K    K+ +
Sbjct: 309 KENEEALNVFSKML-RDGSVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQKNEI 367

Query: 171 SWNAMINGYMKSGKINLARQLF--GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
             +A++N Y KSG++  AR++F  G +  R+LISWNSMI+ Y  +G   EA+E++  + K
Sbjct: 368 VTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYNQMRK 427

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK-HCFDLDGVLGTSLIEMYSKCGSIE 287
            G  PS VT L+ L A S   ++  G      +V+     L     T L+++  + G ++
Sbjct: 428 HGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHYTCLVDLCGRAGRLK 487

Query: 288 SALAVFKAIANKKLGH--WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
             +  F    + +L    + AI+    +H     A E+  ++   G    A T++ + N 
Sbjct: 488 D-VTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEVVKKVLETG-SDDAGTYVLMSNI 545

Query: 346 CSHKGLVDEG 355
            +  G  +E 
Sbjct: 546 YAANGKREEA 555


>AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6819926-6822610 REVERSE
           LENGTH=894
          Length = 894

 Score =  317 bits (811), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/614 (30%), Positives = 309/614 (50%), Gaps = 47/614 (7%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + +W  +IS  +HN     AL +FR+M    ++P+  T+   +  CS L  + +G ++H 
Sbjct: 317 VFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNAVTIMSAVSACSCLKVINQGSEVHS 376

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
             +K+GF                              +D DV+  NSL+D Y++ G +E 
Sbjct: 377 IAVKMGF------------------------------ID-DVLVGNSLVDMYSKCGKLED 405

Query: 126 AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMINGYMK 181
           A K+FD + ++D +TW +++ G  + G    A E+F +M     + + ++WN MI+GY+K
Sbjct: 406 ARKVFDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIK 465

Query: 182 SGKINLARQLFGQMPG-----RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           +G    A  LF +M       RN  +WN +I+GY  NG+  EA+ELF  +     MP+ V
Sbjct: 466 NGDEGEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSV 525

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           TILS L A + L      R IH  +++   D    +  +L + Y+K G IE +  +F  +
Sbjct: 526 TILSLLPACANLLGAKMVREIHGCVLRRNLDAIHAVKNALTDTYAKSGDIEYSRTIFLGM 585

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
             K +  W ++I G  +HG    AL LF +M+  G+ P+  T   ++ A    G VDEG 
Sbjct: 586 ETKDIITWNSLIGGYVLHGSYGPALALFNQMKTQGITPNRGTLSSIILAHGLMGNVDEGK 645

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
           K F  + N+Y I+P +EH   +V +  RA  L++A   I+ M ++    IW S L+  R 
Sbjct: 646 KVFYSIANDYHIIPALEHCSAMVYLYGRANRLEEALQFIQEMNIQSETPIWESFLTGCRI 705

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           HG++++  +AA NL   +P+ T   +++S IYA   K  +     +  ++  + K  G S
Sbjct: 706 HGDIDMAIHAAENLFSLEPENTATESIVSQIYALGAKLGRSLEGNKPRRDNLLKKPLGQS 765

Query: 477 IVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXX 536
            +E R  ++ F  GD+S   T  +Y  + +MS+    +        +             
Sbjct: 766 WIEVRNLIHTFTTGDQSKLCTDVLYPLVEKMSRLDNRSDQYNGELWI-----EEEGREET 820

Query: 537 XXXXXXRLAISFGLLNME--RRTPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRF 594
                 + A++FGL++     +T IRI+KNLR+C DCH   K +S  YG +I++ D    
Sbjct: 821 CGIHSEKFAMAFGLISSSGASKTTIRILKNLRMCRDCHDTAKYVSKRYGCDILLEDTRCL 880

Query: 595 HHFKNGTCSCNDFW 608
           HHFKNG CSC D+W
Sbjct: 881 HHFKNGDCSCKDYW 894



 Score =  199 bits (506), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 206/427 (48%), Gaps = 42/427 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  L +W+ +I  Y   +R  +   LFR M+   +LPD F  P +++GC+    V+ G
Sbjct: 141 MRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAG 200

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K IH  V+K+G        SS + +                         NS++  YA+ 
Sbjct: 201 KVIHSVVIKLGM-------SSCLRVS------------------------NSILAVYAKC 229

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMI 176
           G ++ A K F  M  RD   W ++L    + GK E A E+  +M K+      V+WN +I
Sbjct: 230 GELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILI 289

Query: 177 NGYMKSGKINLARQLFGQMPG----RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            GY + GK + A  L  +M       ++ +W +MISG   NG   +A+++F  +   G++
Sbjct: 290 GGYNQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVV 349

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P+ VTI+SA+SA S L V+  G  +HS  VK  F  D ++G SL++MYSKCG +E A  V
Sbjct: 350 PNAVTIMSAVSACSCLKVINQGSEVHSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKV 409

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F ++ NK +  W ++I G    G   +A ELF  M+   ++P+ IT+  +++     G  
Sbjct: 410 FDSVKNKDVYTWNSMITGYCQAGYCGKAYELFTRMQDANLRPNIITWNTMISGYIKNGDE 469

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR---PNKVIWMS 409
            E    F  M  + K+      +  ++    + G   +A  +   M      PN V  +S
Sbjct: 470 GEAMDLFQRMEKDGKVQRNTATWNLIIAGYIQNGKKDEALELFRKMQFSRFMPNSVTILS 529

Query: 410 LLSSSRN 416
           LL +  N
Sbjct: 530 LLPACAN 536



 Score =  142 bits (357), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 187/376 (49%), Gaps = 54/376 (14%)

Query: 54  LHAVQEGKQIH-GYVLKIGFGF----DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVV 108
           L +  +   IH G +L   FG     D FV++ L++MYAK G +  ARKVFD M +R++ 
Sbjct: 88  LESCIDSGSIHLGRILHARFGLFTEPDVFVETKLLSMYAKCGCIADARKVFDSMRERNLF 147

Query: 109 SWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM 164
           +W+++I  Y+R        KLF  M       D F +  +L G A CG VEA + +   +
Sbjct: 148 TWSAMIGAYSRENRWREVAKLFRLMMKDGVLPDDFLFPKILQGCANCGDVEAGKVIHSVV 207

Query: 165 PKKSSVSW----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
            K    S     N+++  Y K G+++ A + F +M  R++I+WNS++  Y  NG+  EA+
Sbjct: 208 IKLGMSSCLRVSNSILAVYAKCGELDFATKFFRRMRERDVIAWNSVLLAYCQNGKHEEAV 267

Query: 221 ELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMY 280
           EL + + KEG+ P  VT                  W                   LI  Y
Sbjct: 268 ELVKEMEKEGISPGLVT------------------W-----------------NILIGGY 292

Query: 281 SKCGSIESALAVFKAIA----NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHA 336
           ++ G  ++A+ + + +        +  WTA+I GL  +G+  QAL++F +M   G+ P+A
Sbjct: 293 NQLGKCDAAMDLMQKMETFGITADVFTWTAMISGLIHNGMRYQALDMFRKMFLAGVVPNA 352

Query: 337 ITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE 396
           +T +  ++ACS   ++++G++   + + +   +  V     LVD+  + G L+ A+ + +
Sbjct: 353 VTIMSAVSACSCLKVINQGSEVHSIAV-KMGFIDDVLVGNSLVDMYSKCGKLEDARKVFD 411

Query: 397 SMPMRPNKVIWMSLLS 412
           S+  + +   W S+++
Sbjct: 412 SVKNK-DVYTWNSMIT 426



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 4/261 (1%)

Query: 213 NGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL 272
           NG  LEA +  + L ++G      T L  L +      +  GR +H+       + D  +
Sbjct: 59  NGSLLEAEKALDSLFQQGSKVKRSTYLKLLESCIDSGSIHLGRILHARFGLFT-EPDVFV 117

Query: 273 GTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
            T L+ MY+KCG I  A  VF ++  + L  W+A+I          +  +LF  M + G+
Sbjct: 118 ETKLLSMYAKCGCIADARKVFDSMRERNLFTWSAMIGAYSRENRWREVAKLFRLMMKDGV 177

Query: 333 KPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAK 392
            P    F  +L  C++ G V+ G K    ++ +  +   +     ++ +  + G L  A 
Sbjct: 178 LPDDFLFPKILQGCANCGDVEAG-KVIHSVVIKLGMSSCLRVSNSILAVYAKCGELDFAT 236

Query: 393 NIIESMPMRPNKVIWMS-LLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAA 451
                M  R + + W S LL+  +N  + E  E       E        + +L   Y   
Sbjct: 237 KFFRRMRER-DVIAWNSVLLAYCQNGKHEEAVELVKEMEKEGISPGLVTWNILIGGYNQL 295

Query: 452 GKWDKVSHVREMMKERGVLKD 472
           GK D    + + M+  G+  D
Sbjct: 296 GKCDAAMDLMQKMETFGITAD 316


>AT1G71420.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26917822-26920059 REVERSE
           LENGTH=745
          Length = 745

 Score =  315 bits (808), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 196/639 (30%), Positives = 328/639 (51%), Gaps = 46/639 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW  +I+ YV      +   LF  ML H   P+ FTL  V+  C      + G
Sbjct: 122 MPERNVVSWTALITGYVQAGNEQEGFCLFSSMLSH-CFPNEFTLSSVLTSCR----YEPG 176

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARK---VFDKMVDRDVVSWNSLIDGY 117
           KQ+HG  LK+G     +V +++++MY +  +   A +   VF+ +  +++V+WNS+I  +
Sbjct: 177 KQVHGLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWTVFEAIKFKNLVTWNSMIAAF 236

Query: 118 ARNGNVEVAMKLFDEMPSRD-AFTWTALLD--------------GLAKCGKVEAAREVFD 162
                 + A+ +F  M S    F    LL+               ++KC     +  V  
Sbjct: 237 QCCNLGKKAIGVFMRMHSDGVGFDRATLLNICSSLYKSSDLVPNEVSKCCLQLHSLTVKS 296

Query: 163 QMPKKSSVS------WNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGR 215
            +  ++ V+      ++ M+  Y    K      LF +M   R++++WN +I+ + +   
Sbjct: 297 GLVTQTEVATALIKVYSEMLEDYTDCYK------LFMEMSHCRDIVAWNGIITAFAVYDP 350

Query: 216 FLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS 275
              A+ LF  L +E L P   T  S L A +GL    +   IH+ ++K  F  D VL  S
Sbjct: 351 -ERAIHLFGQLRQEKLSPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGFLADTVLNNS 409

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           LI  Y+KCGS++  + VF  + ++ +  W +++    +HG  D  L +F +M    + P 
Sbjct: 410 LIHAYAKCGSLDLCMRVFDDMDSRDVVSWNSMLKAYSLHGQVDSILPVFQKM---DINPD 466

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII 395
           + TFI +L+ACSH G V+EG + F  M  + + +P + HY C++D+L RA    +A+ +I
Sbjct: 467 SATFIALLSACSHAGRVEEGLRIFRSMFEKPETLPQLNHYACVIDMLSRAERFAEAEEVI 526

Query: 396 ESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE-ADPDATGCYTLLSNIYAAAGKW 454
           + MPM P+ V+W++LL S R HGN  +G+ AA  L E  +P  +  Y  +SNIY A G +
Sbjct: 527 KQMPMDPDAVVWIALLGSCRKHGNTRLGKLAADKLKELVEPTNSMSYIQMSNIYNAEGSF 586

Query: 455 DKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLA 514
           ++ +   + M+   V K+   S  E   K++ F  G +  P  +A+Y +L+ +   LK  
Sbjct: 587 NEANLSIKEMETWRVRKEPDLSWTEIGNKVHEFASGGRHRPDKEAVYRELKRLISWLKEM 646

Query: 515 GHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTP-----IRIMKNLRVCN 569
           G+VP+                       +LA++F ++   + +      I+IMKN R+C 
Sbjct: 647 GYVPEMRSASQDIEDEEQEEDNLLHHSEKLALAFAVMEGRKSSDCGVNLIQIMKNTRICI 706

Query: 570 DCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           DCH   KL S + G+EI++RD++RFHHFK+ +CSCND+W
Sbjct: 707 DCHNFMKLASKLLGKEILMRDSNRFHHFKDSSCSCNDYW 745



 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 190/421 (45%), Gaps = 32/421 (7%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFV--QSSLVNMYAKWGEMGLARKVFDKMVD 104
           + + C+    + +G  +H ++L   + + + V   + L+NMYAK G +  AR+VFD M +
Sbjct: 65  LFQACAEQRNLLDGINLHHHMLSHPYCYSQNVILANFLINMYAKCGNILYARQVFDTMPE 124

Query: 105 RDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR---DAFTWTALLDGLAKCGKVEAAREVF 161
           R+VVSW +LI GY + GN +    LF  M S    + FT +++L       + E  ++V 
Sbjct: 125 RNVVSWTALITGYVQAGNEQEGFCLFSSMLSHCFPNEFTLSSVLTSC----RYEPGKQVH 180

Query: 162 DQMPKK----SSVSWNAMINGYMKSGKINLARQ---LFGQMPGRNLISWNSMISGYQLNG 214
               K     S    NA+I+ Y +      A +   +F  +  +NL++WNSMI+ +Q   
Sbjct: 181 GLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWTVFEAIKFKNLVTWNSMIAAFQCCN 240

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR------WIHSFMVKHCFDL 268
              +A+ +F  +  +G+     T+L+  S++   + L           +HS  VK     
Sbjct: 241 LGKKAIGVFMRMHSDGVGFDRATLLNICSSLYKSSDLVPNEVSKCCLQLHSLTVKSGLVT 300

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIAN----KKLGHWTAIIVGLGMHGLADQALELF 324
              + T+LI++YS+   +E     +K        + +  W  II    ++   ++A+ LF
Sbjct: 301 QTEVATALIKVYSE--MLEDYTDCYKLFMEMSHCRDIVAWNGIITAFAVYD-PERAIHLF 357

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
            ++R+  + P   TF  VL AC+              +I    +  TV +   L+    +
Sbjct: 358 GQLRQEKLSPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGFLADTVLN-NSLIHAYAK 416

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLL 444
            G L     + + M  R + V W S+L +   HG ++         ++ +PD+     LL
Sbjct: 417 CGSLDLCMRVFDDMDSR-DVVSWNSMLKAYSLHGQVD-SILPVFQKMDINPDSATFIALL 474

Query: 445 S 445
           S
Sbjct: 475 S 475


>AT2G20540.1 | Symbols: MEF21 | mitochondrial editing factor  21 |
           chr2:8844160-8845764 FORWARD LENGTH=534
          Length = 534

 Score =  313 bits (803), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 167/484 (34%), Positives = 270/484 (55%), Gaps = 40/484 (8%)

Query: 52  SRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWN 111
            R+ +  E K+I+  ++  G     F+ + +V+   K  +M  A ++F+++ + +V  +N
Sbjct: 18  QRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQVSNPNVFLYN 77

Query: 112 SLIDGYARNGNVEVAMKLFD-------EMPSRDAF------------------------- 139
           S+I  Y  N      ++++        E+P R  F                         
Sbjct: 78  SIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCK 137

Query: 140 --------TWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQL 191
                   T  AL+D   K   +  A +VFD+M ++  +SWN++++GY + G++  A+ L
Sbjct: 138 FGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGL 197

Query: 192 FGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVL 251
           F  M  + ++SW +MISGY   G ++EAM+ F  +   G+ P  ++++S L + + L  L
Sbjct: 198 FHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSL 257

Query: 252 GNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGL 311
             G+WIH +  +  F     +  +LIEMYSKCG I  A+ +F  +  K +  W+ +I G 
Sbjct: 258 ELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGY 317

Query: 312 GMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPT 371
             HG A  A+E F EM+R  +KP+ ITF+G+L+ACSH G+  EG + FDMM  +Y+I P 
Sbjct: 318 AYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPK 377

Query: 372 VEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLI 431
           +EHYGCL+D+L RAG L++A  I ++MPM+P+  IW SLLSS R  GNL++   A  +L+
Sbjct: 378 IEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLV 437

Query: 432 EADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGD 491
           E +P+  G Y LL+NIYA  GKW+ VS +R+M++   + K  G S++E    +  F+ GD
Sbjct: 438 ELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGD 497

Query: 492 KSHP 495
            S P
Sbjct: 498 NSKP 501



 Score =  171 bits (434), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/362 (31%), Positives = 183/362 (50%), Gaps = 46/362 (12%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQEGKQ 62
           P +  +N II  Y HN    D + +++Q+L     LPD FT P + K C+ L +   GKQ
Sbjct: 71  PNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQ 130

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +HG++ K G  F    +++L++MY K+ ++  A KVFD+M +RDV+SWNSL+ GYAR G 
Sbjct: 131 VHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQ 190

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSV------ 170
           ++ A  LF  M  +   +WTA++ G    G    A + F +M      P + S+      
Sbjct: 191 MKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPS 250

Query: 171 ----------SW-----------------NAMINGYMKSGKINLARQLFGQMPGRNLISW 203
                      W                 NA+I  Y K G I+ A QLFGQM G+++ISW
Sbjct: 251 CAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISW 310

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG-RWIHSFMV 262
           ++MISGY  +G    A+E F  + +  + P+ +T L  LSA S + +   G R+    M+
Sbjct: 311 STMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD--MM 368

Query: 263 KHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANKKLGH-WTAIIVGLGMHGLADQ 319
           +  + ++  +     LI++ ++ G +E A+ + K +  K     W +++      G  D 
Sbjct: 369 RQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDV 428

Query: 320 AL 321
           AL
Sbjct: 429 AL 430



 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 103/229 (44%), Gaps = 22/229 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    ++SW+ +IS Y ++  ++ A+  F +M    + P+G T   ++  CS +   QEG
Sbjct: 302 MEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEG 361

Query: 61  KQIHGYVLKIGFGFDKFVQ--SSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGY 117
            +    +++  +  +  ++    L+++ A+ G++  A ++   M +  D   W SL+   
Sbjct: 362 LRYFD-MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSC 420

Query: 118 ARNGNVEVAMKLFD---EMPSRDAFTWTALLDGLAKCGKVEAA--------REVFDQMPK 166
              GN++VA+   D   E+   D   +  L +  A  GK E           E   + P 
Sbjct: 421 RTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPG 480

Query: 167 KSSVSWNAMINGYMKSG-------KINLARQLFGQMPGRNLISWNSMIS 208
            S +  N ++  ++          +I++  QLF     +++I+ N+ ++
Sbjct: 481 GSLIEVNNIVQEFVSGDNSKPFWTEISIVLQLFTSHQDQDVITNNNALA 529


>AT3G14730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4949385-4951346 REVERSE
           LENGTH=653
          Length = 653

 Score =  313 bits (802), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 179/511 (35%), Positives = 283/511 (55%), Gaps = 24/511 (4%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           +N +IS +V N    DA+  +R+M  + +LPD +T P ++KG   +  + + K++HG   
Sbjct: 129 YNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAME-LSDVKKVHGLAF 187

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD-VVSWNSLIDGYARNGNVEVAM 127
           K+GF  D +V S LV  Y+K+  +  A+KVFD++ DRD  V WN+L++GY++    E A+
Sbjct: 188 KLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDAL 247

Query: 128 KLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMINGY 179
            +F +M          T T++L      G ++  R +     K  S    V  NA+I+ Y
Sbjct: 248 LVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMY 307

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
            KS  +  A  +F  M  R+L +WNS++  +   G     + LFE +L  G+ P  VT+ 
Sbjct: 308 GKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLT 367

Query: 240 SALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG---------TSLIEMYSKCGSIESAL 290
           + L     LA L  GR IH +M+     + G+L           SL++MY KCG +  A 
Sbjct: 368 TVLPTCGRLASLRQGREIHGYMI-----VSGLLNRKSSNEFIHNSLMDMYVKCGDLRDAR 422

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF ++  K    W  +I G G+    + AL++F  M R G+KP  ITF+G+L ACSH G
Sbjct: 423 MVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSG 482

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            ++EG      M   Y I+PT +HY C++D+L RA  L++A  +  S P+  N V+W S+
Sbjct: 483 FLNEGRNFLAQMETVYNILPTSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSI 542

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           LSS R HGN ++   A   L E +P+  G Y L+SN+Y  AGK+++V  VR+ M+++ V 
Sbjct: 543 LSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVK 602

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIY 501
           K  GCS +  +  ++ F  G+++HP+ K+I+
Sbjct: 603 KTPGCSWIVLKNGVHTFFTGNQTHPEFKSIH 633



 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 195/389 (50%), Gaps = 35/389 (8%)

Query: 34  HHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDK-FVQSSLVNMYAKWGEM 92
           HH++     T    ++ C++      G+QIHG++++ GF  D     +SLVNMYAK G M
Sbjct: 57  HHNVA----TCIATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLM 112

Query: 93  GLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDG- 147
             A  VF    +RDV  +N+LI G+  NG+   AM+ + EM +     D +T+ +LL G 
Sbjct: 113 RRAVLVFGGS-ERDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLKGS 171

Query: 148 ----LAKCGKVE--AAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGR-NL 200
               L+   KV   A +  FD          + ++  Y K   +  A+++F ++P R + 
Sbjct: 172 DAMELSDVKKVHGLAFKLGFDS----DCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDS 227

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           + WN++++GY    RF +A+ +F  + +EG+  S  TI S LSA +    + NGR IH  
Sbjct: 228 VLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGL 287

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
            VK     D V+  +LI+MY K   +E A ++F+A+  + L  W +++      G  D  
Sbjct: 288 AVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGT 347

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEH------ 374
           L LF  M   G++P  +T   VL  C     + +G +     I+ Y IV  + +      
Sbjct: 348 LALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGRE-----IHGYMIVSGLLNRKSSNE 402

Query: 375 --YGCLVDILCRAGHLQQAKNIIESMPMR 401
             +  L+D+  + G L+ A+ + +SM ++
Sbjct: 403 FIHNSLMDMYVKCGDLRDARMVFDSMRVK 431



 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 24/334 (7%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V WN +++ Y    R  DALL+F +M    +     T+  V+   +    +  G+ IHG 
Sbjct: 228 VLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGL 287

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
            +K G G D  V ++L++MY K   +  A  +F+ M +RD+ +WNS++  +   G+ +  
Sbjct: 288 AVKTGSGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGT 347

Query: 127 MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVSW--NA 174
           + LF+ M       D  T T +L    +   +   RE+   M       +KSS  +  N+
Sbjct: 348 LALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNS 407

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +++ Y+K G +  AR +F  M  ++  SWN MI+GY +      A+++F  + + G+ P 
Sbjct: 408 LMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPD 467

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS-----LIEMYSKCGSIESA 289
            +T +  L A S    L  GR   + M      +  +L TS     +I+M  +   +E A
Sbjct: 468 EITFVGLLQACSHSGFLNEGRNFLAQMET----VYNILPTSDHYACVIDMLGRADKLEEA 523

Query: 290 --LAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
             LA+ K I +  +  W +I+    +HG  D AL
Sbjct: 524 YELAISKPICDNPV-VWRSILSSCRLHGNKDLAL 556



 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 115/228 (50%), Gaps = 14/228 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  L +WN ++  + +    +  L LF +ML   + PD  TL  V+  C RL ++++G
Sbjct: 323 MDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQG 382

Query: 61  KQIHGYVLKIGF----GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
           ++IHGY++  G       ++F+ +SL++MY K G++  AR VFD M  +D  SWN +I+G
Sbjct: 383 REIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMING 442

Query: 117 YARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK-----K 167
           Y      E+A+ +F  M       D  T+  LL   +  G +   R    QM        
Sbjct: 443 YGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILP 502

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNG 214
           +S  +  +I+   ++ K+  A +L    P   N + W S++S  +L+G
Sbjct: 503 TSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHG 550



 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 120/252 (47%), Gaps = 9/252 (3%)

Query: 161 FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
            D  P+  +    +++N Y K G +  A  +FG    R++  +N++ISG+ +NG  L+AM
Sbjct: 92  LDDSPRAGT----SLVNMYAKCGLMRRAVLVFGGSE-RDVFGYNALISGFVVNGSPLDAM 146

Query: 221 ELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMY 280
           E +  +   G++P   T  S L     +  L + + +H    K  FD D  +G+ L+  Y
Sbjct: 147 ETYREMRANGILPDKYTFPSLLKGSDAME-LSDVKKVHGLAFKLGFDSDCYVGSGLVTSY 205

Query: 281 SKCGSIESALAVFKAIANKKLG-HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
           SK  S+E A  VF  + ++     W A++ G       + AL +F +MR  G+     T 
Sbjct: 206 SKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTI 265

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
             VL+A +  G +D G     + +        V     L+D+  ++  L++A +I E+M 
Sbjct: 266 TSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVS-NALIDMYGKSKWLEEANSIFEAMD 324

Query: 400 MRPNKVIWMSLL 411
            R +   W S+L
Sbjct: 325 ER-DLFTWNSVL 335



 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 253 NGRWIHSFMVKHCF-DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGL 311
           +G+ IH FMV+  F D     GTSL+ MY+KCG +  A+ VF        G + A+I G 
Sbjct: 78  SGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGGSERDVFG-YNALISGF 136

Query: 312 GMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPT 371
            ++G    A+E + EMR  G+ P   TF  +L       L D   K   +    +K+   
Sbjct: 137 VVNGSPLDAMETYREMRANGILPDKYTFPSLLKGSDAMELSDV-KKVHGL---AFKLGFD 192

Query: 372 VEHY--GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            + Y    LV    +   ++ A+ + + +P R + V+W +L++
Sbjct: 193 SDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVN 235


>AT2G40720.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:16987269-16989851 FORWARD
           LENGTH=860
          Length = 860

 Score =  313 bits (801), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 180/518 (34%), Positives = 276/518 (53%), Gaps = 20/518 (3%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN +++ Y  N     AL LF  M    +LPD FTL  VI  CS L     GK +H  + 
Sbjct: 341 WNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELF 400

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
           K        ++S+L+ +Y+K G    A  VF  M ++D+V+W SLI G  +NG  + A+K
Sbjct: 401 KRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALK 460

Query: 129 LFDEM--------PSRDAFTWTALLDGLAKCGKVEAAR---EVFDQMPKKSSV----SWN 173
           +F +M        P  D  T          C  +EA R   +V   M K   V      +
Sbjct: 461 VFGDMKDDDDSLKPDSDIMTSVT-----NACAGLEALRFGLQVHGSMIKTGLVLNVFVGS 515

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           ++I+ Y K G   +A ++F  M   N+++WNSMIS Y  N     +++LF ++L +G+ P
Sbjct: 516 SLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFP 575

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
             V+I S L A+S  A L  G+ +H + ++     D  L  +LI+MY KCG  + A  +F
Sbjct: 576 DSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIF 635

Query: 294 KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
           K + +K L  W  +I G G HG    AL LF EM++ G  P  +TF+ +++AC+H G V+
Sbjct: 636 KKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVE 695

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           EG   F+ M  +Y I P +EHY  +VD+L RAG L++A + I++MP+  +  IW+ LLS+
Sbjct: 696 EGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSA 755

Query: 414 SRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
           SR H N+E+G  +A  L+  +P+    Y  L N+Y  AG  ++ + +  +MKE+G+ K  
Sbjct: 756 SRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQP 815

Query: 474 GCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKL 511
           GCS +E   + N F  G  S P    I+  L  +   +
Sbjct: 816 GCSWIEVSDRTNVFFSGGSSSPMKAEIFNVLNRLKSNM 853



 Score =  155 bits (391), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/462 (27%), Positives = 226/462 (48%), Gaps = 25/462 (5%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAV--QEGKQIHGY 66
           WN +I  Y    R  + +  FR+ML   + PD F+L  V+    +      +EGKQIHG+
Sbjct: 136 WNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGF 195

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVSWNSLIDGYARNGNVEV 125
           +L+     D F++++L++MY K+G    A +VF ++ D+ +VV WN +I G+  +G  E 
Sbjct: 196 MLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICES 255

Query: 126 AMKLFDEMPSRD---AFTWTALLDGLAKCGKVEAA---REVFDQMPK----KSSVSWNAM 175
           ++ L+  M +++       T+    L  C + E +   R++   + K           ++
Sbjct: 256 SLDLY--MLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYVCTSL 313

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           ++ Y K G +  A  +F  +  + L  WN+M++ Y  N     A++LF  + ++ ++P  
Sbjct: 314 LSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDS 373

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T+ + +S  S L +   G+ +H+ + K        + ++L+ +YSKCG    A  VFK+
Sbjct: 374 FTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKS 433

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMR--RIGMKPHAITFIGVLNACSHKGLVD 353
           +  K +  W ++I GL  +G   +AL++F +M+     +KP +     V NAC+    + 
Sbjct: 434 MEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALR 493

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
            G +    MI +  +V  V     L+D+  + G  + A  +  SM    N V W S++S 
Sbjct: 494 FGLQVHGSMI-KTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTE-NMVAWNSMISC 551

Query: 414 -SRNHGNLEIGEYAAHNLIEAD---PDATGCYTLLSNIYAAA 451
            SRN  NL        NL+ +    PD+    ++L  I + A
Sbjct: 552 YSRN--NLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTA 591



 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 194/399 (48%), Gaps = 22/399 (5%)

Query: 42  FTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFD- 100
           FT P ++K CS L  +  GK IHG V+ +G+ +D F+ +SLVNMY K G +  A +VFD 
Sbjct: 61  FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120

Query: 101 ------KMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAK 150
                  +  RDV  WNS+IDGY +    +  +  F  M       DAF+ + ++  + K
Sbjct: 121 WSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCK 180

Query: 151 CG--KVEAAREVFDQMPKKS----SVSWNAMINGYMKSGKINLARQLFGQMPGR-NLISW 203
            G  + E  +++   M + S    S    A+I+ Y K G    A ++F ++  + N++ W
Sbjct: 181 EGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLW 240

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           N MI G+  +G    +++L+ +     +     +   AL A S     G GR IH  +VK
Sbjct: 241 NVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVK 300

Query: 264 HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALEL 323
                D  + TSL+ MYSKCG +  A  VF  + +K+L  W A++     +     AL+L
Sbjct: 301 MGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDL 360

Query: 324 FMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCF-DMMINEYKIVPTVEHYGCLVDIL 382
           F  MR+  + P + T   V++ CS  GL + G     ++     +   T+E    L+ + 
Sbjct: 361 FGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIE--SALLTLY 418

Query: 383 CRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
            + G    A  + +SM  + + V W SL+S    +G  +
Sbjct: 419 SKCGCDPDAYLVFKSMEEK-DMVAWGSLISGLCKNGKFK 456



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 105/205 (51%), Gaps = 9/205 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +V+WN +ISCY  N+    ++ LF  ML   + PD  ++  V+   S   ++ +G
Sbjct: 537 MSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKG 596

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K +HGY L++G   D  ++++L++MY K G    A  +F KM  + +++WN +I GY  +
Sbjct: 597 KSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSH 656

Query: 121 GNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA-- 174
           G+   A+ LFDEM     S D  T+ +L+      G VE  + +F+ M +   +  N   
Sbjct: 657 GDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEH 716

Query: 175 ---MINGYMKSGKINLARQLFGQMP 196
              M++   ++G +  A      MP
Sbjct: 717 YANMVDLLGRAGLLEEAYSFIKAMP 741


>AT3G47840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:17651912-17654032 FORWARD
           LENGTH=706
          Length = 706

 Score =  311 bits (796), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 172/504 (34%), Positives = 274/504 (54%), Gaps = 10/504 (1%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V+W  II+  VH  R  + L  F +M   + L D +T    +K C+ L  V+ GK IH +
Sbjct: 175 VTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTH 234

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN---- 122
           V+  GF     V +SL  MY + GEM     +F+ M +RDVVSW SLI  Y R G     
Sbjct: 235 VIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKA 294

Query: 123 VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQ-----MPKKSSVSWNAMIN 177
           VE  +K+ +     +  T+ ++    A   ++    ++        +    SVS N+M+ 
Sbjct: 295 VETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVS-NSMMK 353

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y   G +  A  LF  M  R++ISW+++I GY   G   E  + F  + + G  P+   
Sbjct: 354 MYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFA 413

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           + S LS    +AV+  GR +H+  +    + +  + +SLI MYSKCGSI+ A  +F    
Sbjct: 414 LASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETD 473

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
              +   TA+I G   HG + +A++LF +  ++G +P ++TFI VL AC+H G +D G  
Sbjct: 474 RDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFH 533

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
            F+MM   Y + P  EHYGC+VD+LCRAG L  A+ +I  M  + + V+W +LL + +  
Sbjct: 534 YFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAK 593

Query: 418 GNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           G++E G  AA  ++E DP        L+NIY++ G  ++ ++VR+ MK +GV+K+ G S 
Sbjct: 594 GDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSS 653

Query: 478 VEHRGKLNRFIVGDKSHPQTKAIY 501
           ++ +  ++ F+ GD+ HPQ++ IY
Sbjct: 654 IKIKDCVSAFVSGDRFHPQSEDIY 677



 Score =  163 bits (412), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 113/461 (24%), Positives = 219/461 (47%), Gaps = 43/461 (9%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQM--LHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           +VSW  II  YV  + S++AL+LF  M  + H + PD   L  V+K C +   +  G+ +
Sbjct: 71  IVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESL 130

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H Y +K       +V SSL++MY + G++  + +VF +M  R+ V+W ++I G    G  
Sbjct: 131 HAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRY 190

Query: 124 EVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW----NAM 175
           +  +  F EM       D +T+   L   A   +V+  + +   +  +  V+     N++
Sbjct: 191 KEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSL 250

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
              Y + G++     LF  M  R+++SW S+I  Y+  G+ ++A+E F  +    + P+ 
Sbjct: 251 ATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNE 310

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T  S  SA + L+ L  G  +H  ++    +    +  S+++MYS CG++ SA  +F+ 
Sbjct: 311 QTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQG 370

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           +  + +  W+ II G    G  ++  + F  MR+ G KP       +L+   +  +++ G
Sbjct: 371 MRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGG 430

Query: 356 NK------CFDM---------MINEYKIVPTVEH----YG-----------CLVDILCRA 385
            +      CF +         +IN Y    +++     +G            +++     
Sbjct: 431 RQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEH 490

Query: 386 GHLQQAKNIIE---SMPMRPNKVIWMSLLSSSRNHGNLEIG 423
           G  ++A ++ E    +  RP+ V ++S+L++  + G L++G
Sbjct: 491 GKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLG 531



 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 141/282 (50%), Gaps = 10/282 (3%)

Query: 76  KFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLF----- 130
           KF  +S +      G +  AR+VFDKM   D+VSW S+I  Y    N + A+ LF     
Sbjct: 40  KFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRV 99

Query: 131 -DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMINGYMKSGKI 185
            D   S D    + +L    +   +     +     K S +S     +++++ Y + GKI
Sbjct: 100 VDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKI 159

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV 245
           + + ++F +MP RN ++W ++I+G    GR+ E +  F  + +   +    T   AL A 
Sbjct: 160 DKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKAC 219

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWT 305
           +GL  +  G+ IH+ ++   F     +  SL  MY++CG ++  L +F+ ++ + +  WT
Sbjct: 220 AGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWT 279

Query: 306 AIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           ++IV     G   +A+E F++MR   + P+  TF  + +AC+
Sbjct: 280 SLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACA 321



 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 181/410 (44%), Gaps = 45/410 (10%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW  +I  Y    +   A+  F +M +  + P+  T   +   C+ L  +  G
Sbjct: 270 MSERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWG 329

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+H  VL +G      V +S++ MY+  G +  A  +F  M  RD++SW+++I GY + 
Sbjct: 330 EQLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQA 389

Query: 121 GNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQM----PKKSSVSW 172
           G  E   K F  M         F   +LL        +E  R+V         +++S   
Sbjct: 390 GFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVR 449

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +++IN Y K G I  A  +FG+    +++S  +MI+GY  +G+  EA++LFE  LK G  
Sbjct: 450 SSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFR 509

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P  VT +S L+A +                 H   LD  LG     M  +  ++  A   
Sbjct: 510 PDSVTFISVLTACT-----------------HSGQLD--LGFHYFNMMQETYNMRPAKE- 549

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
                     H+  ++  L   G    A ++  EM     K   + +  +L AC  KG +
Sbjct: 550 ----------HYGCMVDLLCRAGRLSDAEKMINEM---SWKKDDVVWTTLLIACKAKGDI 596

Query: 353 DEGNKCFDMMINEYKIVPT-VEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
           + G +  + ++   ++ PT       L +I    G+L++A N+ ++M  +
Sbjct: 597 ERGRRAAERIL---ELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAK 643


>AT5G59200.1 | Symbols: OTP80 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:23888793-23890427 REVERSE
           LENGTH=544
          Length = 544

 Score =  310 bits (794), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/506 (32%), Positives = 275/506 (54%), Gaps = 38/506 (7%)

Query: 43  TLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM 102
           TL  V++ C  +  V     IH  +++     D FV   L+ + +    +  A  VF  +
Sbjct: 31  TLISVLRSCKNIAHV---PSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYV 87

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDG----------- 147
            + +V  + ++IDG+  +G     + L+  M       D +  T++L             
Sbjct: 88  SNPNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKACDLKVCREIHA 147

Query: 148 --------------------LAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINL 187
                                 K G++  A+++FD+MP +  V+   MIN Y + G I  
Sbjct: 148 QVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKE 207

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           A +LF  +  ++ + W +MI G   N    +A+ELF  +  E +  +  T +  LSA S 
Sbjct: 208 ALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSD 267

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
           L  L  GRW+HSF+     +L   +G +LI MYS+CG I  A  VF+ + +K +  +  +
Sbjct: 268 LGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTM 327

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I GL MHG + +A+  F +M   G +P+ +T + +LNACSH GL+D G + F+ M   + 
Sbjct: 328 ISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFN 387

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAA 427
           + P +EHYGC+VD+L R G L++A   IE++P+ P+ ++  +LLS+ + HGN+E+GE  A
Sbjct: 388 VEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIA 447

Query: 428 HNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRF 487
             L E++   +G Y LLSN+YA++GKW + + +RE M++ G+ K+ GCS +E   +++ F
Sbjct: 448 KRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEF 507

Query: 488 IVGDKSHPQTKAIYAKLREMSKKLKL 513
           +VGD +HP  +AIY +L+E+++ L+ 
Sbjct: 508 LVGDIAHPHKEAIYQRLQELNRILRF 533



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 144/296 (48%), Gaps = 32/296 (10%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V W  +I   V N   N AL LFR+M   ++  + FT  CV+  CS L A++ G+ +H +
Sbjct: 221 VCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSF 280

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           V         FV ++L+NMY++ G++  AR+VF  M D+DV+S+N++I G A +G    A
Sbjct: 281 VENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEA 340

Query: 127 MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMIN 177
           +  F +M +R    +  T  ALL+  +  G ++   EVF+ M +  +V      +  +++
Sbjct: 341 INEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVD 400

Query: 178 GYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK---EGLMP 233
              + G++  A +    +P   + I   +++S  +++G     MEL E + K   E   P
Sbjct: 401 LLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGN----MELGEKIAKRLFESENP 456

Query: 234 SHVT--ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
              T  +LS L A S       G+W  S  ++      G      IE    C +IE
Sbjct: 457 DSGTYVLLSNLYASS-------GKWKESTEIRESMRDSG------IEKEPGCSTIE 499


>AT3G25060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9128516-9130321 FORWARD
           LENGTH=601
          Length = 601

 Score =  308 bits (790), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 284/512 (55%), Gaps = 9/512 (1%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           +N +I  Y      ++ L L+ QM+   + PD  T    IK C     +++G+ +    +
Sbjct: 84  YNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAV 143

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
             G+  D FV SS++N+Y K G+M  A  +F KM  RDV+ W +++ G+A+ G    A++
Sbjct: 144 DFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVE 203

Query: 129 LFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYM 180
            + EM +    RD      LL      G  +  R V   + +     + V   ++++ Y 
Sbjct: 204 FYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYA 263

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           K G I +A ++F +M  +  +SW S+ISG+  NG   +A E    +   G  P  VT++ 
Sbjct: 264 KVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVG 323

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
            L A S +  L  GR +H +++K    LD V  T+L++MYSKCG++ S+  +F+ +  K 
Sbjct: 324 VLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATALMDMYSKCGALSSSREIFEHVGRKD 382

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
           L  W  +I   G+HG   + + LF++M    ++P   TF  +L+A SH GLV++G   F 
Sbjct: 383 LVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFS 442

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
           +MIN+YKI P+ +HY CL+D+L RAG +++A ++I S  +     IW++LLS   NH NL
Sbjct: 443 VMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNL 502

Query: 421 EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEH 480
            +G+ AA+ +++ +PD+ G  TL+SN +A A KW +V+ VR++M+   + K  G S +E 
Sbjct: 503 SVGDIAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEV 562

Query: 481 RGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
            G+L  F++ D SH +   +   LR +  +++
Sbjct: 563 NGELRTFLMEDLSHHEHYHMLQVLRNLKTEIR 594



 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 189/370 (51%), Gaps = 18/370 (4%)

Query: 62  QIHGYVLKIGFGFD-KFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           QIH +V+  G   +   +   L+    + GE+  ARKVFD++  R V  +NS+I  Y+R 
Sbjct: 35  QIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRG 94

Query: 121 GNVEVAMKLFDEM------PSRDAFTWT--ALLDGLAKCGKVEAAREVFDQMPKKSSVSW 172
            N +  ++L+D+M      P    FT T  A L GL          +  D   K      
Sbjct: 95  KNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVC 154

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           ++++N YMK GK++ A  LFG+M  R++I W +M++G+   G+ L+A+E +  +  EG  
Sbjct: 155 SSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFG 214

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
              V +L  L A   L     GR +H ++ +    ++ V+ TSL++MY+K G IE A  V
Sbjct: 215 RDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRV 274

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F  +  K    W ++I G   +GLA++A E  +EM+ +G +P  +T +GVL ACS  G +
Sbjct: 275 FSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSL 334

Query: 353 DEGNKCFDMMINEY---KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
             G      ++  +   ++  T      L+D+  + G L  ++ I E +  R + V W +
Sbjct: 335 KTGRLVHCYILKRHVLDRVTATA-----LMDMYSKCGALSSSREIFEHVG-RKDLVCWNT 388

Query: 410 LLSSSRNHGN 419
           ++S    HGN
Sbjct: 389 MISCYGIHGN 398



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 163/319 (51%), Gaps = 9/319 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K  ++ W  +++ +    +S  A+  +R+M +     D   +  +++    L   + G
Sbjct: 177 MAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMG 236

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +HGY+ + G   +  V++SLV+MYAK G + +A +VF +M+ +  VSW SLI G+A+N
Sbjct: 237 RSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQN 296

Query: 121 GNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKK---SSVSWN 173
           G    A +   EM S     D  T   +L   ++ G ++  R V   + K+     V+  
Sbjct: 297 GLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTAT 356

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           A+++ Y K G ++ +R++F  +  ++L+ WN+MIS Y ++G   E + LF  + +  + P
Sbjct: 357 ALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEP 416

Query: 234 SHVTILSALSAVSGLAVLGNGR-WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
            H T  S LSA+S   ++  G+ W    + K+           LI++ ++ G +E AL +
Sbjct: 417 DHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDM 476

Query: 293 FKAIA-NKKLGHWTAIIVG 310
             +   +  L  W A++ G
Sbjct: 477 INSEKLDNALPIWVALLSG 495


>AT5G39350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15750929-15752962 FORWARD
           LENGTH=677
          Length = 677

 Score =  308 bits (790), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 178/493 (36%), Positives = 271/493 (54%), Gaps = 12/493 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    ++SWN +IS Y  N   NDAL++F  M++  +  D  T+  ++  C  L  ++ G
Sbjct: 178 MKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMG 237

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H  V +   G    V+++LVNMY K G M  AR VFD+M  RDV++W  +I+GY  +
Sbjct: 238 RNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTED 297

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREV----FDQMPKKSSVSW 172
           G+VE A++L   M       +A T  +L+       KV   + +      Q      +  
Sbjct: 298 GDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIE 357

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            ++I+ Y K  +++L  ++F      +   W+++I+G   N    +A+ LF+ + +E + 
Sbjct: 358 TSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVE 417

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P+  T+ S L A + LA L     IH ++ K  F       T L+ +YSKCG++ESA  +
Sbjct: 418 PNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKI 477

Query: 293 FKAIANKKLGH----WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
           F  I  K        W A+I G GMHG    AL++FMEM R G+ P+ ITF   LNACSH
Sbjct: 478 FNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSH 537

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
            GLV+EG   F  M+  YK +    HY C+VD+L RAG L +A N+I ++P  P   +W 
Sbjct: 538 SGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWG 597

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
           +LL++   H N+++GE AA+ L E +P+ TG Y LL+NIYAA G+W  +  VR MM+  G
Sbjct: 598 ALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVG 657

Query: 469 VLKDAGCSIVEHR 481
           + K  G S +E R
Sbjct: 658 LRKKPGHSTIEIR 670



 Score =  219 bits (557), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 139/436 (31%), Positives = 234/436 (53%), Gaps = 22/436 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL--LPDGFTLPCVIKGCSRLHAVQ 58
           M + +L+S+N++I  YV     +DA+ +F +M+   +  +PDG+T P V K    L +++
Sbjct: 75  MPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMK 134

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
            G  +HG +L+  FG DK+VQ++L+ MY  +G++ +AR VFD M +RDV+SWN++I GY 
Sbjct: 135 LGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYY 194

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSV 170
           RNG +  A+ +FD M +     D  T  ++L        +E  R V   + +K       
Sbjct: 195 RNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIE 254

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             NA++N Y+K G+++ AR +F +M  R++I+W  MI+GY  +G    A+EL  ++  EG
Sbjct: 255 VKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEG 314

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P+ VTI S +S       + +G+ +H + V+     D ++ TSLI MY+KC  ++   
Sbjct: 315 VRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCF 374

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF   +    G W+AII G   + L   AL LF  MRR  ++P+  T   +L A  +  
Sbjct: 375 RVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPA--YAA 432

Query: 351 LVDEGNK----CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI---IESMPMRPN 403
           L D        C+   + +   + +++    LV +  + G L+ A  I   I+      +
Sbjct: 433 LADLRQAMNIHCY---LTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKD 489

Query: 404 KVIWMSLLSSSRNHGN 419
            V+W +L+S    HG+
Sbjct: 490 VVLWGALISGYGMHGD 505



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 115/245 (46%), Gaps = 4/245 (1%)

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL--MPSHV 236
           Y   G I  AR+LF +MP  +L+S+N +I  Y   G + +A+ +F  ++ EG+  +P   
Sbjct: 59  YALCGHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGY 118

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T      A   L  +  G  +H  +++  F  D  +  +L+ MY   G +E A  VF  +
Sbjct: 119 TYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVM 178

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
            N+ +  W  +I G   +G  + AL +F  M    +     T + +L  C H   ++ G 
Sbjct: 179 KNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGR 238

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
                ++ E ++   +E    LV++  + G + +A+ + + M  R + + W  +++    
Sbjct: 239 NVHK-LVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRME-RRDVITWTCMINGYTE 296

Query: 417 HGNLE 421
            G++E
Sbjct: 297 DGDVE 301


>AT2G21090.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:9045695-9047488 REVERSE
           LENGTH=597
          Length = 597

 Score =  308 bits (788), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 180/539 (33%), Positives = 282/539 (52%), Gaps = 77/539 (14%)

Query: 37  LLPDGFTLP-----CVIKGCSRLHAVQEGKQIHGYVLKIGFG------------------ 73
           L   G  LP      +++ C    ++++GK IH ++   GF                   
Sbjct: 37  LTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCG 96

Query: 74  --------FDK------FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
                   FD+      +  +++V+ Y K G +  AR VFD M +RDVVSWN+++ GYA+
Sbjct: 97  KPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQ 156

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALL------------------------------ 145
           +GN+  A+  + E        + F++  LL                              
Sbjct: 157 DGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVL 216

Query: 146 -----DGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
                D  AKCG++E+A+  FD+M  K    W  +I+GY K G +  A +LF +MP +N 
Sbjct: 217 SCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNP 276

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           +SW ++I+GY   G    A++LF  ++  G+ P   T  S L A + +A L +G+ IH +
Sbjct: 277 VSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGY 336

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK-KLGHWTAIIVGLGMHGLADQ 319
           M++     + ++ +SLI+MYSK GS+E++  VF+   +K     W  +I  L  HGL  +
Sbjct: 337 MIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHK 396

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           AL +  +M +  ++P+  T + +LNACSH GLV+EG + F+ M  ++ IVP  EHY CL+
Sbjct: 397 ALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLI 456

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG 439
           D+L RAG  ++    IE MP  P+K IW ++L   R HGN E+G+ AA  LI+ DP+++ 
Sbjct: 457 DLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDPESSA 516

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTK 498
            Y LLS+IYA  GKW+ V  +R +MK+R V K+   S +E   K+  F V D SH   +
Sbjct: 517 PYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHAR 575


>AT1G06140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:1864796-1866472 FORWARD
           LENGTH=558
          Length = 558

 Score =  307 bits (787), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/483 (35%), Positives = 272/483 (56%), Gaps = 11/483 (2%)

Query: 8   SWNLIISCYVHNHRS--NDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           SWN I+S Y  +     +D LLL+ +M  H    D F L   IK C  L  ++ G  IHG
Sbjct: 74  SWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHG 133

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
             +K G   D +V  SLV MYA+ G M  A+KVFD++  R+ V W  L+ GY +      
Sbjct: 134 LAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPE 193

Query: 126 AMKLF----DEMPSRDAFTWTALLDGLA-----KCGKVEAAREVFDQMPKKSSVSWNAMI 176
             +LF    D   + DA T   L+         K GK      +      +S     ++I
Sbjct: 194 VFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASII 253

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           + Y+K   ++ AR+LF     RN++ W ++ISG+    R +EA +LF  +L+E ++P+  
Sbjct: 254 DMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQC 313

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T+ + L + S L  L +G+ +H +M+++  ++D V  TS I+MY++CG+I+ A  VF  +
Sbjct: 314 TLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMM 373

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
             + +  W+++I   G++GL ++AL+ F +M+   + P+++TF+ +L+ACSH G V EG 
Sbjct: 374 PERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGW 433

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
           K F+ M  +Y +VP  EHY C+VD+L RAG + +AK+ I++MP++P    W +LLS+ R 
Sbjct: 434 KQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRI 493

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           H  +++    A  L+  +P+ +  Y LLSNIYA AG W+ V+ VR  M  +G  K  G S
Sbjct: 494 HKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKHVGQS 553

Query: 477 IVE 479
             E
Sbjct: 554 ATE 556



 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/254 (30%), Positives = 139/254 (54%), Gaps = 11/254 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V W  +IS +    R+ +A  LFRQML   +LP+  TL  ++  CS L +++ GK +HG
Sbjct: 277 VVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHG 336

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           Y+++ G   D    +S ++MYA+ G + +AR VFD M +R+V+SW+S+I+ +  NG  E 
Sbjct: 337 YMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEE 396

Query: 126 AMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV-----SWNAMI 176
           A+  F +M S+    ++ T+ +LL   +  G V+   + F+ M +   V      +  M+
Sbjct: 397 ALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMV 456

Query: 177 NGYMKSGKINLARQLFGQMPGRNLIS-WNSMISGYQLNGRFLEAMELFEVLLK-EGLMPS 234
           +   ++G+I  A+     MP + + S W +++S  +++     A E+ E LL  E    S
Sbjct: 457 DLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSS 516

Query: 235 HVTILSALSAVSGL 248
              +LS + A +G+
Sbjct: 517 VYVLLSNIYADAGM 530



 Score =  118 bits (296), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/274 (27%), Positives = 133/274 (48%), Gaps = 45/274 (16%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V W +++  Y+   +  +   LF  M    L  D  TL C++K C  + A + GK +HG 
Sbjct: 176 VLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGV 235

Query: 67  VLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            ++  F     ++Q+S+++MY K   +  ARK+F+  VDR+VV W +LI G+A+      
Sbjct: 236 SIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVE 295

Query: 126 AMKLFDEM------PSR---------------------------------DAFTWTALLD 146
           A  LF +M      P++                                 DA  +T+ +D
Sbjct: 296 AFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFID 355

Query: 147 GLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL----IS 202
             A+CG ++ AR VFD MP+++ +SW++MIN +  +G    A   F +M  +N+    ++
Sbjct: 356 MYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVT 415

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKE-GLMPSH 235
           + S++S    +G   E  + FE + ++ G++P  
Sbjct: 416 FVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEE 449



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/524 (21%), Positives = 216/524 (41%), Gaps = 89/524 (16%)

Query: 52  SRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV--DRDVVS 109
           S+   +   +Q+H  V+  GF  +  + SSL N Y +   +  A   F+++    R+  S
Sbjct: 15  SQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHS 74

Query: 110 WNSLIDGYARNGNV--EVAMKLFDEMP--------------------------------- 134
           WN+++ GY+++        + L++ M                                  
Sbjct: 75  WNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGL 134

Query: 135 ------SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLA 188
                  +D +   +L++  A+ G +E+A++VFD++P ++SV W  ++ GY+K       
Sbjct: 135 AMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLK------- 187

Query: 189 RQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGL 248
              + + P                     E   LF ++   GL    +T++  + A   +
Sbjct: 188 ---YSKDP---------------------EVFRLFCLMRDTGLALDALTLICLVKACGNV 223

Query: 249 AVLGNGRWIHSFMVKHCF-DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
                G+ +H   ++  F D    L  S+I+MY KC  +++A  +F+   ++ +  WT +
Sbjct: 224 FAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTL 283

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I G      A +A +LF +M R  + P+  T   +L +CS  G +  G      MI    
Sbjct: 284 ISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGI 343

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAA 427
            +  V ++   +D+  R G++Q A+ + + MP R N + W S++++   +G  E      
Sbjct: 344 EMDAV-NFTSFIDMYARCGNIQMARTVFDMMPER-NVISWSSMINAFGINGLFEEALDCF 401

Query: 428 HNLIEAD--PDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA---GCSI----- 477
           H +   +  P++    +LLS    +    +       M ++ GV+ +     C +     
Sbjct: 402 HKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGR 461

Query: 478 VEHRGKLNRFIVGDKSHPQTKAIYAKLR--EMSKKLKLAGHVPD 519
               G+   FI      P   A  A L    + K++ LAG + +
Sbjct: 462 AGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAE 505


>AT1G62260.1 | Symbols: MEF9 | mitochondrial editing factor 9 |
           chr1:22997826-22999796 REVERSE LENGTH=656
          Length = 656

 Score =  307 bits (786), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 174/497 (35%), Positives = 272/497 (54%), Gaps = 23/497 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   VSW+ +I+ +  N   + A++LFR+M   D  P    L  ++ G  +   + E 
Sbjct: 162 MPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP----LCALVAGLIKNERLSEA 217

Query: 61  KQIHGYVLKIGFGFDKFVQS--SLVNMYAKWGEMGLARKVFDKMVD-------------- 104
             + G    +  G +  V +  +L+  Y + G++  AR +FD++ D              
Sbjct: 218 AWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRERF 277

Query: 105 -RDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQ 163
            ++VVSWNS+I  Y + G+V  A  LFD+M  RD  +W  ++DG     ++E A  +F +
Sbjct: 278 CKNVVSWNSMIKAYLKVGDVVSARLLFDQMKDRDTISWNTMIDGYVHVSRMEDAFALFSE 337

Query: 164 MPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF 223
           MP + + SWN M++GY   G + LAR  F + P ++ +SWNS+I+ Y+ N  + EA++LF
Sbjct: 338 MPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEKNKDYKEAVDLF 397

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
             +  EG  P   T+ S LSA +GL  L  G  +H  +VK     D  +  +LI MYS+C
Sbjct: 398 IRMNIEGEKPDPHTLTSLLSASTGLVNLRLGMQMHQIVVKTVIP-DVPVHNALITMYSRC 456

Query: 284 GSIESALAVFKAIANKK-LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGV 342
           G I  +  +F  +  K+ +  W A+I G   HG A +AL LF  M+  G+ P  ITF+ V
Sbjct: 457 GEIMESRRIFDEMKLKREVITWNAMIGGYAFHGNASEALNLFGSMKSNGIYPSHITFVSV 516

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
           LNAC+H GLVDE    F  M++ YKI P +EHY  LV++    G  ++A  II SMP  P
Sbjct: 517 LNACAHAGLVDEAKAQFVSMMSVYKIEPQMEHYSSLVNVTSGQGQFEEAMYIITSMPFEP 576

Query: 403 NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVRE 462
           +K +W +LL + R + N+ +   AA  +   +P+++  Y LL N+YA  G WD+ S VR 
Sbjct: 577 DKTVWGALLDACRIYNNVGLAHVAAEAMSRLEPESSTPYVLLYNMYADMGLWDEASQVRM 636

Query: 463 MMKERGVLKDAGCSIVE 479
            M+ + + K+ G S V+
Sbjct: 637 NMESKRIKKERGSSWVD 653



 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 200/468 (42%), Gaps = 104/468 (22%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V+WN +IS YV     N A  LF      D++P             +   V     I GY
Sbjct: 72  VTWNTMISGYVKRREMNQARKLF------DVMP-------------KRDVVTWNTMISGY 112

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           V   G  F                 +  ARK+FD+M  RD  SWN++I GYA+N  +  A
Sbjct: 113 VSCGGIRF-----------------LEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEA 155

Query: 127 MKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----------------- 169
           + LF++MP R+A +W+A++ G  + G+V++A  +F +MP K S                 
Sbjct: 156 LLLFEKMPERNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSPLCALVAGLIKNERLS 215

Query: 170 --------------------VSWNAMINGYMKSGKINLARQLFGQMPG------------ 197
                                ++N +I GY + G++  AR LF Q+P             
Sbjct: 216 EAAWVLGQYGSLVSGREDLVYAYNTLIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRE 275

Query: 198 ---RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
              +N++SWNSMI  Y   G  + A  LF+  +K+    S  T++     VS        
Sbjct: 276 RFCKNVVSWNSMIKAYLKVGDVVSARLLFD-QMKDRDTISWNTMIDGYVHVS-------- 326

Query: 255 RWIHSF-MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
           R   +F +     + D      ++  Y+  G++E A   F+    K    W +II     
Sbjct: 327 RMEDAFALFSEMPNRDAHSWNMMVSGYASVGNVELARHYFEKTPEKHTVSWNSIIAAYEK 386

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD--EGNKCFDMMINEYKIVPT 371
           +    +A++LF+ M   G KP   T   +L+A +  GLV+   G +   +++    ++P 
Sbjct: 387 NKDYKEAVDLFIRMNIEGEKPDPHTLTSLLSAST--GLVNLRLGMQMHQIVVK--TVIPD 442

Query: 372 VEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           V  +  L+ +  R G + +++ I + M ++   + W +++     HGN
Sbjct: 443 VPVHNALITMYSRCGEIMESRRIFDEMKLKREVITWNAMIGGYAFHGN 490



 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 204/451 (45%), Gaps = 62/451 (13%)

Query: 21  RSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQS 80
           RS   LL+FR++L+         L C++  C+   +      +         GF     +
Sbjct: 3   RSRSVLLIFRKVLYQ-----SSCLKCLL--CANSFSTSVSSSL---------GFR--ATN 44

Query: 81  SLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFT 140
             +N   + G +  AR +F+K+  R+ V+WN++I GY +   +  A KLFD MP RD  T
Sbjct: 45  KELNQMIRSGYIAEARDIFEKLEARNTVTWNTMISGYVKRREMNQARKLFDVMPKRDVVT 104

Query: 141 WTALLDGLAKCGKV---EAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPG 197
           W  ++ G   CG +   E AR++FD+MP + S SWN MI+GY K+ +I  A  LF +MP 
Sbjct: 105 WNTMISGYVSCGGIRFLEEARKLFDEMPSRDSFSWNTMISGYAKNRRIGEALLLFEKMPE 164

Query: 198 RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGL---AVLGNG 254
           RN +SW++MI+G+  NG    A+ LF  +  +   P     L AL  V+GL     L   
Sbjct: 165 RNAVSWSAMITGFCQNGEVDSAVVLFRKMPVKDSSP-----LCAL--VAGLIKNERLSEA 217

Query: 255 RWI---HSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN------------- 298
            W+   +  +V    DL     T LI  Y + G +E+A  +F  I +             
Sbjct: 218 AWVLGQYGSLVSGREDLVYAYNT-LIVGYGQRGQVEAARCLFDQIPDLCGDDHGGEFRER 276

Query: 299 --KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
             K +  W ++I      G    A  LF +M+        I++  +++   H   +++  
Sbjct: 277 FCKNVVSWNSMIKAYLKVGDVVSARLLFDQMK----DRDTISWNTMIDGYVHVSRMEDAF 332

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
             F  M N          +  +V      G+++ A++  E  P + + V W S++++   
Sbjct: 333 ALFSEMPNR-----DAHSWNMMVSGYASVGNVELARHYFEKTPEK-HTVSWNSIIAAYEK 386

Query: 417 HGNLE--IGEYAAHNLIEADPDATGCYTLLS 445
           + + +  +  +   N+    PD     +LLS
Sbjct: 387 NKDYKEAVDLFIRMNIEGEKPDPHTLTSLLS 417


>AT2G03380.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:1028292-1030361 FORWARD
           LENGTH=689
          Length = 689

 Score =  306 bits (785), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 169/484 (34%), Positives = 274/484 (56%), Gaps = 11/484 (2%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V W  +I+ YV N    + L+LF +M  +++L + +T   +I  C++L A+ +GK  HG
Sbjct: 207 VVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHG 266

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            ++K G      + +SL++MY K G++  AR+VF++    D+V W ++I GY  NG+V  
Sbjct: 267 CLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNE 326

Query: 126 AMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMIN 177
           A+ LF +M       +  T  ++L G      +E  R V     K     ++V+ NA+++
Sbjct: 327 ALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVA-NALVH 385

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K  +   A+ +F     +++++WNS+ISG+  NG   EA+ LF  +  E + P+ VT
Sbjct: 386 MYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVT 445

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL--GTSLIEMYSKCGSIESALAVFKA 295
           + S  SA + L  L  G  +H++ VK  F     +  GT+L++ Y+KCG  +SA  +F  
Sbjct: 446 VASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDT 505

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           I  K    W+A+I G G  G    +LELF EM +   KP+  TF  +L+AC H G+V+EG
Sbjct: 506 IEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEG 565

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
            K F  M  +Y   P+ +HY C+VD+L RAG L+QA +IIE MP++P+   + + L    
Sbjct: 566 KKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCG 625

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
            H   ++GE     +++  PD    Y L+SN+YA+ G+W++   VR +MK+RG+ K AG 
Sbjct: 626 MHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGH 685

Query: 476 SIVE 479
           S +E
Sbjct: 686 STME 689



 Score =  179 bits (454), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 205/426 (48%), Gaps = 12/426 (2%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P    W +++ CY  N  S + + L+  ++ H    D       +K C+ L  +  GK+
Sbjct: 104 EPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKK 163

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           IH  ++K+   FD  V + L++MYAK GE+  A KVF+ +  R+VV W S+I GY +N  
Sbjct: 164 IHCQLVKVP-SFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDL 222

Query: 123 VEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNA 174
            E  + LF+ M   +     +T+  L+    K   +   +     + K     SS    +
Sbjct: 223 CEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTS 282

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +++ Y+K G I+ AR++F +    +L+ W +MI GY  NG   EA+ LF+ +    + P+
Sbjct: 283 LLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPN 342

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
            VTI S LS    +  L  GR +H   +K     D  +  +L+ MY+KC     A  VF+
Sbjct: 343 CVTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFE 401

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
             + K +  W +II G   +G   +AL LF  M    + P+ +T   + +AC+  G +  
Sbjct: 402 MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAV 461

Query: 355 GNKCFDMMINEYKIVPTVEHYG-CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           G+      +    +  +  H G  L+D   + G  Q A+ I +++  + N + W +++  
Sbjct: 462 GSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEK-NTITWSAMIGG 520

Query: 414 SRNHGN 419
               G+
Sbjct: 521 YGKQGD 526



 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 195/412 (47%), Gaps = 17/412 (4%)

Query: 45  PC--VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM 102
           PC  ++  C+ + ++   +Q HG +   G   D  + + LV++Y  +G    AR VFD++
Sbjct: 46  PCFLLLSKCTNIDSL---RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQI 102

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAR 158
            + D   W  ++  Y  N      +KL+D +       D   ++  L    +   ++  +
Sbjct: 103 PEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGK 162

Query: 159 EVFDQM---PKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGR 215
           ++  Q+   P   +V    +++ Y K G+I  A ++F  +  RN++ W SMI+GY  N  
Sbjct: 163 KIHCQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDL 222

Query: 216 FLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS 275
             E + LF  + +  ++ +  T  + + A + L+ L  G+W H  +VK   +L   L TS
Sbjct: 223 CEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTS 282

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           L++MY KCG I +A  VF   ++  L  WTA+IVG   +G  ++AL LF +M+ + +KP+
Sbjct: 283 LLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPN 342

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII 395
            +T   VL+ C     ++ G     + I        V +   LV +  +    + AK + 
Sbjct: 343 CVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVAN--ALVHMYAKCYQNRDAKYVF 400

Query: 396 ESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAH--NLIEADPDATGCYTLLS 445
           E M    + V W S++S    +G++    +  H  N     P+     +L S
Sbjct: 401 E-MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFS 451


>AT5G08510.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2753099-2754731 FORWARD
           LENGTH=511
          Length = 511

 Score =  306 bits (785), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/380 (41%), Positives = 240/380 (63%), Gaps = 3/380 (0%)

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMP 196
           D+F  T L+   AK G +  AR VFD+M K+    WNAMI GY + G +  A +LF  MP
Sbjct: 116 DSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMP 175

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGR 255
            +N+ SW ++ISG+  NG + EA+++F  + K+  + P+H+T++S L A + L  L  GR
Sbjct: 176 RKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGR 235

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK-LGHWTAIIVGLGMH 314
            +  +  ++ F  +  +  + IEMYSKCG I+ A  +F+ + N++ L  W ++I  L  H
Sbjct: 236 RLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATH 295

Query: 315 GLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEH 374
           G  D+AL LF +M R G KP A+TF+G+L AC H G+V +G + F  M   +KI P +EH
Sbjct: 296 GKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEH 355

Query: 375 YGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD 434
           YGC++D+L R G LQ+A ++I++MPM+P+ V+W +LL +   HGN+EI E A+  L + +
Sbjct: 356 YGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLE 415

Query: 435 PDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS-IVEHRGKLNRFIVGDKS 493
           P   G   ++SNIYAA  KWD V  +R++MK+  + K AG S  VE    +++F V DKS
Sbjct: 416 PTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKS 475

Query: 494 HPQTKAIYAKLREMSKKLKL 513
           HP++  IY  L E+ +++KL
Sbjct: 476 HPRSYEIYQVLEEIFRRMKL 495



 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 182/404 (45%), Gaps = 77/404 (19%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           +N +I  Y  +H+ +++++L+  +    L P   T   +    +   + +  + +H    
Sbjct: 50  YNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFF 109

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
           + GF  D F  ++L+  YAK G +  AR+VFD+M  RDV  WN++I GY R G+++ AM+
Sbjct: 110 RSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAME 169

Query: 129 LFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----------------- 171
           LFD MP ++  +WT ++ G ++ G    A ++F  M K  SV                  
Sbjct: 170 LFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLG 229

Query: 172 -----------------------WNAMINGYMKSGKINLARQLFGQMPG-RNLISWNSMI 207
                                   NA I  Y K G I++A++LF ++   RNL SWNSMI
Sbjct: 230 ELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMI 289

Query: 208 SGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD 267
                +G+  EA+ LF  +L+EG  P  VT +  L A            +H  MV     
Sbjct: 290 GSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLAC-----------VHGGMV----- 333

Query: 268 LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM 327
              V G  L +   +   I           + KL H+  +I  LG  G   +A +L   +
Sbjct: 334 ---VKGQELFKSMEEVHKI-----------SPKLEHYGCMIDLLGRVGKLQEAYDL---I 376

Query: 328 RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPT 371
           + + MKP A+ +  +L ACS  G V+      + +   +K+ PT
Sbjct: 377 KTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEAL---FKLEPT 417



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 129/259 (49%), Gaps = 13/259 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLH-HDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  + SW  +IS +  N   ++AL +F  M     + P+  T+  V+  C+ L  ++ 
Sbjct: 174 MPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEI 233

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD-RDVVSWNSLIDGYA 118
           G+++ GY  + GF  + +V ++ + MY+K G + +A+++F+++ + R++ SWNS+I   A
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293

Query: 119 RNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--- 171
            +G  + A+ LF +M       DA T+  LL      G V   +E+F  M +   +S   
Sbjct: 294 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKL 353

Query: 172 --WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK 228
             +  MI+   + GK+  A  L   MP + + + W +++     +G    A    E L K
Sbjct: 354 EHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFK 413

Query: 229 -EGLMPSHVTILSALSAVS 246
            E   P +  I+S + A +
Sbjct: 414 LEPTNPGNCVIMSNIYAAN 432



 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/272 (25%), Positives = 118/272 (43%), Gaps = 51/272 (18%)

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           AR+LF          +N +I  Y ++ +  E++ L+ +L  +GL PSH T     +A + 
Sbjct: 35  ARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASAS 94

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI--------------------- 286
            +     R +HS   +  F+ D    T+LI  Y+K G++                     
Sbjct: 95  FSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAM 154

Query: 287 ----------ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRR-IGMKPH 335
                     ++A+ +F ++  K +  WT +I G   +G   +AL++F+ M +   +KP+
Sbjct: 155 ITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPN 214

Query: 336 AITFIGVLNACSHKGLVDEG---------NKCFDMMINEYKIVPTVEHYGCLVDILCRAG 386
            IT + VL AC++ G ++ G         N  FD   N Y    T+E Y        + G
Sbjct: 215 HITVVSVLPACANLGELEIGRRLEGYARENGFFD---NIYVCNATIEMYS-------KCG 264

Query: 387 HLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
            +  AK + E +  + N   W S++ S   HG
Sbjct: 265 MIDVAKRLFEELGNQRNLCSWNSMIGSLATHG 296


>AT2G36980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15531161-15533038 FORWARD
           LENGTH=625
          Length = 625

 Score =  305 bits (781), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 181/593 (30%), Positives = 291/593 (49%), Gaps = 84/593 (14%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   V+WN +++ Y       +A+ LF Q+   D  PD ++   ++  C+ L  V+ G
Sbjct: 30  MPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCASLGNVKFG 89

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFD-------------------- 100
           ++I   V++ GF     V +SL++MY K  +   A KVF                     
Sbjct: 90  RKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKVFRDMCCDSRNEVTWCSLLFAYM 149

Query: 101 -------------KMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTA 143
                        +M  R   +WN +I G+A  G +E  + LF EM       D +T+++
Sbjct: 150 NAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLESCLSLFKEMLESEFKPDCYTFSS 209

Query: 144 LLDGLA------------------------------------KCGKVEAAREVFDQMPKK 167
           L++  +                                    K G  + A    + +   
Sbjct: 210 LMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVLSFYTKLGSRDDAMRELESIEVL 269

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
           + VSWN++I+  MK G+   A ++F   P +N+++W +MI+GY  NG   +A+  F  ++
Sbjct: 270 TQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTTMITGYGRNGDGEQALRFFVEMM 329

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           K G+   H    + L A SGLA+LG+G+ IH  ++   F     +G +L+ +Y+KCG I+
Sbjct: 330 KSGVDSDHFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIK 389

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            A   F  IANK L  W  ++   G+HGLADQAL+L+  M   G+KP  +TFIG+L  CS
Sbjct: 390 EADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCS 449

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES----MPMRPN 403
           H GLV+EG   F+ M+ +Y+I   V+H  C++D+  R GHL +AK++  +    +    N
Sbjct: 450 HSGLVEEGCMIFESMVKDYRIPLEVDHVTCMIDMFGRGGHLAEAKDLATTYSSLVTDSSN 509

Query: 404 KVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREM 463
              W +LL +   H + E+G   +  L  A+P     + LLSN+Y + G+W +   VR  
Sbjct: 510 NSSWETLLGACSTHWHTELGREVSKVLKIAEPSEEMSFVLLSNLYCSTGRWKEGEDVRRE 569

Query: 464 MKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGH 516
           M ERG+ K  GCS +E   +++ F+VGD SHP       +L E+S+ L    H
Sbjct: 570 MVERGMKKTPGCSWIEVGNQVSTFVVGDSSHP-------RLEELSETLNCLQH 615



 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 178/416 (42%), Gaps = 83/416 (19%)

Query: 80  SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDA- 138
           +S +   AK G +  AR+VFD M + D V+WN+++  Y+R G  + A+ LF ++   DA 
Sbjct: 8   TSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFSDAK 67

Query: 139 ---FTWTA-----------------------------------LLDGLAKCGKVEAAREV 160
              +++TA                                   L+D   KC    +A +V
Sbjct: 68  PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127

Query: 161 FDQM--PKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLE 218
           F  M    ++ V+W +++  YM + +   A  +F +MP R   +WN MISG+   G+   
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187

Query: 219 AMELFEVLLKEGLMPSHVTILSALSAVSGLAV-LGNGRWIHSFMVKHCFD---------- 267
            + LF+ +L+    P   T  S ++A S  +  +  GR +H+ M+K+ +           
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRMVHAVMLKNGWSSAVEAKNSVL 247

Query: 268 ---------------------LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTA 306
                                L  V   S+I+   K G  E AL VF     K +  WT 
Sbjct: 248 SFYTKLGSRDDAMRELESIEVLTQVSWNSIIDACMKIGETEKALEVFHLAPEKNIVTWTT 307

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           +I G G +G  +QAL  F+EM + G+      +  VL+ACS   L+  G      MI+  
Sbjct: 308 MITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALLGHGK-----MIHGC 362

Query: 367 KIVPTVEHYG----CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
            I    + Y      LV++  + G +++A      +  + + V W ++L +   HG
Sbjct: 363 LIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFGDIANK-DLVSWNTMLFAFGVHG 417



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 114/289 (39%), Gaps = 42/289 (14%)

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           V   + I    KSG+I  ARQ+F  MP  + ++WN+M++ Y   G   EA+ LF  L   
Sbjct: 5   VRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRFS 64

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG----- 284
              P   +  + LS  + L  +  GR I S +++  F     +  SLI+MY KC      
Sbjct: 65  DAKPDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSA 124

Query: 285 ----------------------------SIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
                                         E+AL VF  +  +    W  +I G    G 
Sbjct: 125 NKVFRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGK 184

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKI----VPTV 372
            +  L LF EM     KP   TF  ++NACS     D  N  +  M++   +       V
Sbjct: 185 LESCLSLFKEMLESEFKPDCYTFSSLMNACS----ADSSNVVYGRMVHAVMLKNGWSSAV 240

Query: 373 EHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           E    ++    + G    A   +ES+ +   +V W S++ +    G  E
Sbjct: 241 EAKNSVLSFYTKLGSRDDAMRELESIEVL-TQVSWNSIIDACMKIGETE 288


>AT1G53600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:20001263-20003416 FORWARD
           LENGTH=717
          Length = 717

 Score =  302 bits (773), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 170/514 (33%), Positives = 273/514 (53%), Gaps = 32/514 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +++W  +I  Y       D   LF +M    D+  +  TL  + K C      +E
Sbjct: 234 MTERNVITWTAMIDGYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYRE 293

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G QIHG V ++   FD F+ +SL++MY+K G MG A+ V                     
Sbjct: 294 GSQIHGLVSRMPLEFDLFLGNSLMSMYSKLGYMGEAKAV--------------------- 332

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGY 179
                     F  M ++D+ +W +L+ GL +  ++  A E+F++MP K  VSW  MI G+
Sbjct: 333 ----------FGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKMPGKDMVSWTDMIKGF 382

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
              G+I+   +LFG MP ++ I+W +MIS +  NG + EA+  F  +L++ + P+  T  
Sbjct: 383 SGKGEISKCVELFGMMPEKDNITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFS 442

Query: 240 SALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK 299
           S LSA + LA L  G  IH  +VK     D  +  SL+ MY KCG+   A  +F  I+  
Sbjct: 443 SVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEP 502

Query: 300 KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCF 359
            +  +  +I G   +G   +AL+LF  +   G +P+ +TF+ +L+AC H G VD G K F
Sbjct: 503 NIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYF 562

Query: 360 DMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
             M + Y I P  +HY C+VD+L R+G L  A N+I +MP +P+  +W SLLS+S+ H  
Sbjct: 563 KSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLR 622

Query: 420 LEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVE 479
           +++ E AA  LIE +PD+   Y +LS +Y+  GK      +  + K + + KD G S + 
Sbjct: 623 VDLAELAAKKLIELEPDSATPYVVLSQLYSIIGKNRDCDRIMNIKKSKRIKKDPGSSWII 682

Query: 480 HRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKL 513
            +G+++ F+ GD+S    + I   L+ + K+++L
Sbjct: 683 LKGEVHNFLAGDESQLNLEEIGFTLKMIRKEMEL 716



 Score =  137 bits (346), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/336 (29%), Positives = 163/336 (48%), Gaps = 15/336 (4%)

Query: 91  EMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS--RDAFTWTALLDGL 148
           ++G A ++F  + +++ VS+ ++I G+ R G  + A  L+ E P   RD+     LL G 
Sbjct: 128 DLGKAYELFCDIPEKNAVSYATMITGFVRAGRFDEAEFLYAETPVKFRDSVASNVLLSGY 187

Query: 149 AKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMIS 208
            + GK   A  VF  M  K  VS ++M++GY K G+I  AR LF +M  RN+I+W +MI 
Sbjct: 188 LRAGKWNEAVRVFQGMAVKEVVSCSSMVHGYCKMGRIVDARSLFDRMTERNVITWTAMID 247

Query: 209 GYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL-SAVSGLAVLGNGRWIHSFMVKHCFD 267
           GY   G F +   LF  + +EG +  +   L+ +  A         G  IH  + +   +
Sbjct: 248 GYFKAGFFEDGFGLFLRMRQEGDVKVNSNTLAVMFKACRDFVRYREGSQIHGLVSRMPLE 307

Query: 268 LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM 327
            D  LG SL+ MYSK G +  A AVF  + NK    W ++I GL       +A ELF +M
Sbjct: 308 FDLFLGNSLMSMYSKLGYMGEAKAVFGVMKNKDSVSWNSLITGLVQRKQISEAYELFEKM 367

Query: 328 RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGH 387
               M    +++  ++   S KG + +  + F MM  +  I  T      ++      G+
Sbjct: 368 PGKDM----VSWTDMIKGFSGKGEISKCVELFGMMPEKDNITWTA-----MISAFVSNGY 418

Query: 388 LQQAKNIIESMPMR---PNKVIWMSLLSSSRNHGNL 420
            ++A      M  +   PN   + S+LS++ +  +L
Sbjct: 419 YEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADL 454


>AT1G05750.1 | Symbols: PDE247, CLB19 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr1:1721523-1723025
           FORWARD LENGTH=500
          Length = 500

 Score =  301 bits (772), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 168/464 (36%), Positives = 257/464 (55%), Gaps = 43/464 (9%)

Query: 100 DKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDG-------- 147
           ++      VSW S I+   RNG +  A K F +M       +  T+ ALL G        
Sbjct: 29  NQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGS 88

Query: 148 ------------------------------LAKCGKVEAAREVFDQMPKKSSVSWNAMIN 177
                                          +K G+ + AR VFD M  K+SV+WN MI+
Sbjct: 89  EALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMID 148

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
           GYM+SG+++ A ++F +MP R+LISW +MI+G+   G   EA+  F  +   G+ P +V 
Sbjct: 149 GYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVA 208

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           I++AL+A + L  L  G W+H +++   F  +  +  SLI++Y +CG +E A  VF  + 
Sbjct: 209 IIAALNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNME 268

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            + +  W ++IVG   +G A ++L  F +M+  G KP A+TF G L ACSH GLV+EG +
Sbjct: 269 KRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLR 328

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
            F +M  +Y+I P +EHYGCLVD+  RAG L+ A  +++SMPM+PN+V+  SLL++  NH
Sbjct: 329 YFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNH 388

Query: 418 G-NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           G N+ + E    +L + +  +   Y +LSN+YAA GKW+  S +R  MK  G+ K  G S
Sbjct: 389 GNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFS 448

Query: 477 IVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDT 520
            +E    ++ F+ GD +H +T  I   L  +S  L+L G V +T
Sbjct: 449 SIEIDDCMHVFMAGDNAHVETTYIREVLELISSDLRLQGCVVET 492



 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 164/340 (48%), Gaps = 47/340 (13%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE--GKQ 62
           T VSW   I+    N R  +A   F  M    + P+  T   ++ GC    +  E  G  
Sbjct: 35  TTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFTSGSEALGDL 94

Query: 63  IHGYVLKIGFGFDK-FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           +HGY  K+G   +   V ++++ MY+K G    AR VFD M D++ V+WN++IDGY R+G
Sbjct: 95  LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTWNTMIDGYMRSG 154

Query: 122 NVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAA------------------------ 157
            V+ A K+FD+MP RD  +WTA+++G  K G  E A                        
Sbjct: 155 QVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALN 214

Query: 158 ---------------REVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
                          R V  Q  K +    N++I+ Y + G +  ARQ+F  M  R ++S
Sbjct: 215 ACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVS 274

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           WNS+I G+  NG   E++  F  + ++G  P  VT   AL+A S + ++  G  +  F +
Sbjct: 275 WNSVIVGFAANGNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEG--LRYFQI 332

Query: 263 KHC-FDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANK 299
             C + +   +     L+++YS+ G +E AL + +++  K
Sbjct: 333 MKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMK 372



 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/271 (29%), Positives = 132/271 (48%), Gaps = 25/271 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  L+SW  +I+ +V      +ALL FR+M    + PD   +   +  C+ L A+  G
Sbjct: 166 MPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVKPDYVAIIAALNACTNLGALSFG 225

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H YVL   F  +  V +SL+++Y + G +  AR+VF  M  R VVSWNS+I G+A N
Sbjct: 226 LWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTVVSWNSVIVGFAAN 285

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           GN   ++  F +M  +    DA T+T  L   +  G VE     F  M     +S     
Sbjct: 286 GNAHESLVYFRKMQEKGFKPDAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEH 345

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +  +++ Y ++G++  A +L   MP + N +   S+++    +G          ++L E 
Sbjct: 346 YGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVIGSLLAACSNHGN--------NIVLAER 397

Query: 231 LMPSHVTILSALSAVSGLAVLGN-----GRW 256
           LM  H+T L+  S  S   +L N     G+W
Sbjct: 398 LM-KHLTDLNVKSH-SNYVILSNMYAADGKW 426



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 48/270 (17%)

Query: 190 QLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA----V 245
           Q   Q      +SW S I+    NGR  EA + F  +   G+ P+H+T ++ LS      
Sbjct: 26  QRHNQSTSETTVSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIALLSGCGDFT 85

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVL-GTSLIEMYSK---------------------- 282
           SG   LG+   +H +  K   D + V+ GT++I MYSK                      
Sbjct: 86  SGSEALGD--LLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDKNSVTW 143

Query: 283 ---------CGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
                     G +++A  +F  +  + L  WTA+I G    G  ++AL  F EM+  G+K
Sbjct: 144 NTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEEALLWFREMQISGVK 203

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP----TVEHYGCLVDILCRAGHLQ 389
           P  +  I  LNAC++ G +      F + ++ Y +       V     L+D+ CR G ++
Sbjct: 204 PDYVAIIAALNACTNLGALS-----FGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVE 258

Query: 390 QAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
            A+ +  +M  R   V W S++     +GN
Sbjct: 259 FARQVFYNMEKR-TVVSWNSVIVGFAANGN 287


>AT2G33680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:14249608-14251791 FORWARD
           LENGTH=727
          Length = 727

 Score =  300 bits (768), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 172/505 (34%), Positives = 275/505 (54%), Gaps = 10/505 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH--DLLPDGFTLPCVIKGCSRLHAVQ 58
           M +    +W+ ++S Y    R  +A+ +F   L    +     +    V+   +    V 
Sbjct: 179 MPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVG 238

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
            G+QIH   +K G      + ++LV MY+K   +  A K+FD   DR+ ++W++++ GY+
Sbjct: 239 LGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYS 298

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSV 170
           +NG    A+KLF  M S       +T   +L+  +    +E  +++   + K    +   
Sbjct: 299 QNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLF 358

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +  A+++ Y K+G +  AR+ F  +  R++  W S+ISGY  N    EA+ L+  +   G
Sbjct: 359 ATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAG 418

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           ++P+  T+ S L A S LA L  G+ +H   +KH F L+  +G++L  MYSKCGS+E   
Sbjct: 419 IIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGN 478

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF+   NK +  W A+I GL  +G  D+ALELF EM   GM+P  +TF+ +++ACSHKG
Sbjct: 479 LVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKG 538

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            V+ G   F+MM ++  + P V+HY C+VD+L RAG L++AK  IES  +     +W  L
Sbjct: 539 FVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRIL 598

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           LS+ +NHG  E+G YA   L+      +  Y  LS IY A G+   V  V + M+  GV 
Sbjct: 599 LSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVS 658

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHP 495
           K+ GCS +E + + + F+VGD  HP
Sbjct: 659 KEVGCSWIELKNQYHVFVVGDTMHP 683



 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 130/427 (30%), Positives = 218/427 (51%), Gaps = 15/427 (3%)

Query: 6   LVSWNLIISCYVHN---HRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +VSWN +I+ Y  N     S   + LFR+M   D+LP+ +TL  + K  S L +   G+Q
Sbjct: 80  VVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQ 139

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
            H  V+K+    D +V +SLV MY K G +    KVF  M +R+  +W++++ GYA  G 
Sbjct: 140 AHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGR 199

Query: 123 VEVAMKLFD------EMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW---- 172
           VE A+K+F+      E  S   + +TA+L  LA    V   R++     K   + +    
Sbjct: 200 VEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALS 259

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           NA++  Y K   +N A ++F     RN I+W++M++GY  NG  LEA++LF  +   G+ 
Sbjct: 260 NALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIK 319

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           PS  TI+  L+A S +  L  G+ +HSF++K  F+      T+L++MY+K G +  A   
Sbjct: 320 PSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKG 379

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F  +  + +  WT++I G   +   ++AL L+  M+  G+ P+  T   VL ACS    +
Sbjct: 380 FDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATL 439

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
           + G +     I ++     V     L  +  + G L+    +    P + + V W +++S
Sbjct: 440 ELGKQVHGHTI-KHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNK-DVVSWNAMIS 497

Query: 413 SSRNHGN 419
              ++G 
Sbjct: 498 GLSHNGQ 504



 Score =  179 bits (453), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 190/369 (51%), Gaps = 21/369 (5%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+ +HG +++ G        + LVN YAK G++  A  +F+ ++ +DVVSWNSLI GY++
Sbjct: 33  GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92

Query: 120 NGNVE---VAMKLFDEMPSRD----AFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS- 171
           NG +      M+LF EM ++D    A+T   +    +        R+    + K SS   
Sbjct: 93  NGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGD 152

Query: 172 ---WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL- 227
                +++  Y K+G +    ++F  MP RN  +W++M+SGY   GR  EA+++F + L 
Sbjct: 153 IYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLR 212

Query: 228 -KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
            KE    S     + LS+++    +G GR IH   +K+       L  +L+ MYSKC S+
Sbjct: 213 EKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESL 272

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
             A  +F +  ++    W+A++ G   +G + +A++LF  M   G+KP   T +GVLNAC
Sbjct: 273 NEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNAC 332

Query: 347 SHKGLVDEGNKCFDMMIN---EYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPN 403
           S    ++EG +    ++    E  +  T      LVD+  +AG L  A+   + +  R +
Sbjct: 333 SDICYLEEGKQLHSFLLKLGFERHLFATT----ALVDMYAKAGCLADARKGFDCLQER-D 387

Query: 404 KVIWMSLLS 412
             +W SL+S
Sbjct: 388 VALWTSLIS 396


>AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:20520789-20522980 REVERSE
           LENGTH=701
          Length = 701

 Score =  299 bits (766), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 171/578 (29%), Positives = 312/578 (53%), Gaps = 13/578 (2%)

Query: 43  TLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM 102
           T   +++ C RL +++  K+++G+++  GF  ++++ + ++ M+ K G +  AR++FD++
Sbjct: 125 TYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEI 184

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLF----DEMPSRDAFTWTALLDGLAKCGKVEAAR 158
            +R++ S+ S+I G+   GN   A +LF    +E+   +  T+  +L   A  G +   +
Sbjct: 185 PERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGK 244

Query: 159 EVFDQMPKKSSVSWN----AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
           ++     K   V        +I+ Y K G I  AR  F  MP +  ++WN++I+GY L+G
Sbjct: 245 QLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHG 304

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
              EA+ L   +   G+     T+   +   + LA L   +  H+ ++++ F+ + V  T
Sbjct: 305 YSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHASLIRNGFESEIVANT 364

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           +L++ YSK G +++A  VF  +  K +  W A++ G   HG    A++LF +M    + P
Sbjct: 365 ALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAP 424

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
           + +TF+ VL+AC++ GL ++G + F  M   + I P   HY C++++L R G L +A   
Sbjct: 425 NHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAF 484

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKW 454
           I   P++    +W +LL++ R   NLE+G   A  L    P+  G Y ++ N+Y + GK 
Sbjct: 485 IRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKT 544

Query: 455 DKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDK--SHPQT--KAIYAKLREMSKK 510
            + + V E ++ +G+     C+ VE   + + F+ GD+  S+ +T  + IY K+ E+ ++
Sbjct: 545 AEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEE 604

Query: 511 LKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCND 570
           +   G+  +  Q L                  +LAI++GL+N     P++I +N R+C +
Sbjct: 605 ISEYGY-SEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKN 663

Query: 571 CHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           CH V + +S + GRE++VRD SRFHHFK G CSC  +W
Sbjct: 664 CHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701



 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 57/312 (18%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M + T V+WN +I+ Y  +  S +AL L   M    +  D FTL  +I+  ++L  ++  
Sbjct: 285 MPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELT 344

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQ H  +++ GF  +    ++LV+ Y+KWG +  AR VFDK+  ++++SWN+L+ GYA +
Sbjct: 345 KQAHASLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANH 404

Query: 121 GNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQM------------ 164
           G    A+KLF++M + +      T+ A+L   A  G  E   E+F  M            
Sbjct: 405 GRGTDAVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMH 464

Query: 165 ------------------------PKKSSVS-WNAMINGYMKSGKINLAR----QLFGQM 195
                                   P K++V+ W A++N       + L R    +L+G  
Sbjct: 465 YACMIELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMG 524

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
           P + L ++  M + Y   G+  EA  + E L  +G        LS + A + + V   G 
Sbjct: 525 PEK-LGNYVVMYNMYNSMGKTAEAAGVLETLESKG--------LSMMPACTWVEV---GD 572

Query: 256 WIHSFMVKHCFD 267
             HSF+    FD
Sbjct: 573 QTHSFLSGDRFD 584



 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 3/218 (1%)

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL-SAVSGLAVLGNGRWIHSFMVK 263
           S I    L  RF EA ELFE+L         V+   AL  A   L  +   + ++ FM+ 
Sbjct: 92  SQIEKLVLCNRFREAFELFEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMS 151

Query: 264 HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALEL 323
           + F+ +  +   ++ M+ KCG I  A  +F  I  + L  + +II G    G   +A EL
Sbjct: 152 NGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFEL 211

Query: 324 FMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILC 383
           F  M          TF  +L A +  G +  G +     +    +  T    G L+D+  
Sbjct: 212 FKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCG-LIDMYS 270

Query: 384 RAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           + G ++ A+   E MP +   V W ++++    HG  E
Sbjct: 271 KCGDIEDARCAFECMPEKTT-VAWNNVIAGYALHGYSE 307


>AT5G56310.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22802322-22803914 FORWARD
           LENGTH=530
          Length = 530

 Score =  299 bits (765), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 155/373 (41%), Positives = 235/373 (63%), Gaps = 2/373 (0%)

Query: 142 TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPG--RN 199
           T L+     CG +  AR++FD+M  K    WNA++ GY K G+++ AR L   MP   RN
Sbjct: 155 TGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRN 214

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
            +SW  +ISGY  +GR  EA+E+F+ +L E + P  VT+L+ LSA + L  L  G  I S
Sbjct: 215 EVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICS 274

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
           ++     +    L  ++I+MY+K G+I  AL VF+ +  + +  WT II GL  HG   +
Sbjct: 275 YVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAE 334

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           AL +F  M + G++P+ +TFI +L+ACSH G VD G + F+ M ++Y I P +EHYGC++
Sbjct: 335 ALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMI 394

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG 439
           D+L RAG L++A  +I+SMP + N  IW SLL++S  H +LE+GE A   LI+ +P+ +G
Sbjct: 395 DLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSG 454

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKA 499
            Y LL+N+Y+  G+WD+   +R MMK  GV K AG S +E   ++ +FI GD +HPQ + 
Sbjct: 455 NYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVYKFISGDLTHPQVER 514

Query: 500 IYAKLREMSKKLK 512
           I+  L+EM  +++
Sbjct: 515 IHEILQEMDLQIQ 527



 Score =  139 bits (349), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 107/384 (27%), Positives = 186/384 (48%), Gaps = 50/384 (13%)

Query: 25  ALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVN 84
           A+ ++R++      PD FT P V+K   R+  V  G+QIHG V+  GF     V + L+ 
Sbjct: 100 AITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQ 159

Query: 85  MYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS--RDAFTWT 142
           MY   G +G ARK+FD+M+ +DV  WN+L+ GY + G ++ A  L + MP   R+  +WT
Sbjct: 160 MYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWT 219

Query: 143 ALLDGLAKCGKVEAAREVFDQM------PKKSSV--------------------SW---- 172
            ++ G AK G+   A EVF +M      P + ++                    S+    
Sbjct: 220 CVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHR 279

Query: 173 ---------NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF 223
                    NA+I+ Y KSG I  A  +F  +  RN+++W ++I+G   +G   EA+ +F
Sbjct: 280 GMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMF 339

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNG-RWIHSFMVKHCFDLDGVLGTSLIEMYSK 282
             ++K G+ P+ VT ++ LSA S +  +  G R  +S   K+    +      +I++  +
Sbjct: 340 NRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGR 399

Query: 283 CGSIESALAVFKAIANK-KLGHWTAIIVGLGMH---GLADQALELFMEMRRIGMKPHAIT 338
            G +  A  V K++  K     W +++    +H    L ++AL   +++       ++  
Sbjct: 400 AGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGERALSELIKLE----PNNSGN 455

Query: 339 FIGVLNACSHKGLVDEGNKCFDMM 362
           ++ + N  S+ G  DE     +MM
Sbjct: 456 YMLLANLYSNLGRWDESRMMRNMM 479



 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 151/292 (51%), Gaps = 25/292 (8%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VSW  +IS Y  + R+++A+ +F++ML  ++ PD  TL  V+  C+ L +++ G++I  Y
Sbjct: 216 VSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSY 275

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           V   G      + +++++MYAK G +  A  VF+ + +R+VV+W ++I G A +G+   A
Sbjct: 276 VDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEA 335

Query: 127 MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AMIN 177
           + +F+ M       +  T+ A+L   +  G V+  + +F+ M  K  +  N      MI+
Sbjct: 336 LAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMID 395

Query: 178 GYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKE--GLMPS 234
              ++GK+  A ++   MP + N   W S+++   ++      +EL E  L E   L P+
Sbjct: 396 LLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVH----HDLELGERALSELIKLEPN 451

Query: 235 HVTILSALSAV-SGLAVLGNGRWIHSFMVKHCFDLDGV---LGTSLIEMYSK 282
           +      L+ + S L     GRW  S M+++     GV    G S IE+ ++
Sbjct: 452 NSGNYMLLANLYSNL-----GRWDESRMMRNMMKGIGVKKMAGESSIEVENR 498


>AT2G34400.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:14516226-14518186 FORWARD
           LENGTH=621
          Length = 621

 Score =  298 bits (764), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 170/499 (34%), Positives = 274/499 (54%), Gaps = 13/499 (2%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALL-LFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
            +P   S+N +I    +    ++A L L+R+M    L PD FT   V   C++L  +  G
Sbjct: 92  EEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVG 151

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H  + K+G   D  +  SL+ MYAK G++G ARK+FD++ +RD VSWNS+I GY+  
Sbjct: 152 RSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEA 211

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSW 172
           G  + AM LF +M       D  T  ++L   +  G +   R + +    K    S+   
Sbjct: 212 GYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLG 271

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           + +I+ Y K G ++ AR++F QM  ++ ++W +MI+ Y  NG+  EA +LF  + K G+ 
Sbjct: 272 SKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVS 331

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P   T+ + LSA   +  L  G+ I +   +     +  + T L++MY KCG +E AL V
Sbjct: 332 PDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRV 391

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F+A+  K    W A+I      G A +AL LF    R+ + P  ITFIGVL+AC H GLV
Sbjct: 392 FEAMPVKNEATWNAMITAYAHQGHAKEALLLF---DRMSVPPSDITFIGVLSACVHAGLV 448

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            +G + F  M + + +VP +EHY  ++D+L RAG L +A   +E  P +P++++  ++L 
Sbjct: 449 HQGCRYFHEMSSMFGLVPKIEHYTNIIDLLSRAGMLDEAWEFMERFPGKPDEIMLAAILG 508

Query: 413 SSRNHGNLEIGEYAAHNLIE-ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           +     ++ I E A   L+E  +    G Y + SN+ A    WD+ + +R +M++RGV+K
Sbjct: 509 ACHKRKDVAIREKAMRMLMEMKEAKNAGNYVISSNVLADMKMWDESAKMRALMRDRGVVK 568

Query: 472 DAGCSIVEHRGKLNRFIVG 490
             GCS +E  G+L  F+ G
Sbjct: 569 TPGCSWIEIEGELMEFLAG 587



 Score =  158 bits (400), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 174/347 (50%), Gaps = 11/347 (3%)

Query: 82  LVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV-EVAMKLFDEMP----SR 136
           L+    + G+   +  +F    + +  S+N +I G     N  E A+ L+  M       
Sbjct: 71  LIPKAVELGDFNYSSFLFSVTEEPNHYSFNYMIRGLTNTWNDHEAALSLYRRMKFSGLKP 130

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPK---KSSVSWN-AMINGYMKSGKINLARQLF 192
           D FT+  +    AK  ++   R V   + K   +  V  N ++I  Y K G++  AR+LF
Sbjct: 131 DKFTYNFVFIACAKLEEIGVGRSVHSSLFKVGLERDVHINHSLIMMYAKCGQVGYARKLF 190

Query: 193 GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG 252
            ++  R+ +SWNSMISGY   G   +AM+LF  + +EG  P   T++S L A S L  L 
Sbjct: 191 DEITERDTVSWNSMISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLR 250

Query: 253 NGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLG 312
            GR +    +     L   LG+ LI MY KCG ++SA  VF  +  K    WTA+I    
Sbjct: 251 TGRLLEEMAITKKIGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYS 310

Query: 313 MHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTV 372
            +G + +A +LF EM + G+ P A T   VL+AC   G ++ G K  +   +E  +   +
Sbjct: 311 QNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG-KQIETHASELSLQHNI 369

Query: 373 EHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
                LVD+  + G +++A  + E+MP++ N+  W +++++  + G+
Sbjct: 370 YVATGLVDMYGKCGRVEEALRVFEAMPVK-NEATWNAMITAYAHQGH 415



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 12/207 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K   V+W  +I+ Y  N +S++A  LF +M    + PD  TL  V+  C  + A++ G
Sbjct: 294 MIKKDRVAWTAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELG 353

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQI  +  ++    + +V + LV+MY K G +  A +VF+ M  ++  +WN++I  YA  
Sbjct: 354 KQIETHASELSLQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQ 413

Query: 121 GNVEVAMKLFDEM--PSRDAFTWTALLDGLAKCGKVEAAREVFDQM-------PKKSSVS 171
           G+ + A+ LFD M  P  D  T+  +L      G V      F +M       PK     
Sbjct: 414 GHAKEALLLFDRMSVPPSD-ITFIGVLSACVHAGLVHQGCRYFHEMSSMFGLVPKIE--H 470

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR 198
           +  +I+   ++G ++ A +   + PG+
Sbjct: 471 YTNIIDLLSRAGMLDEAWEFMERFPGK 497


>AT3G02330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:473881-476592 REVERSE
           LENGTH=903
          Length = 903

 Score =  298 bits (762), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 174/544 (31%), Positives = 286/544 (52%), Gaps = 50/544 (9%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           S+N +I+ Y        ALLLF +++   L  D  +L  V + C+ +  + EG QI+G  
Sbjct: 349 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 408

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           +K     D  V ++ ++MY K   +  A +VFD+M  RD VSWN++I  + +NG     +
Sbjct: 409 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 468

Query: 128 KLFDEM-PSR---DAFTW----------------------------------TALLDGLA 149
            LF  M  SR   D FT+                                   +L+D  +
Sbjct: 469 FLFVSMLRSRIEPDEFTFGSILKACTGGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYS 528

Query: 150 KCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISG 209
           KCG +E A ++  +  ++++VS           G +    ++  +      +SWNS+ISG
Sbjct: 529 KCGMIEEAEKIHSRFFQRANVS-----------GTMEELEKMHNKRLQEMCVSWNSIISG 577

Query: 210 YQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLD 269
           Y +  +  +A  LF  +++ G+ P   T  + L   + LA  G G+ IH+ ++K     D
Sbjct: 578 YVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSD 637

Query: 270 GVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRR 329
             + ++L++MYSKCG +  +  +F+    +    W A+I G   HG  ++A++LF  M  
Sbjct: 638 VYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMIL 697

Query: 330 IGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQ 389
             +KP+ +TFI +L AC+H GL+D+G + F MM  +Y + P + HY  +VDIL ++G ++
Sbjct: 698 ENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVK 757

Query: 390 QAKNIIESMPMRPNKVIWMSLLSSSRNH-GNLEIGEYAAHNLIEADPDATGCYTLLSNIY 448
           +A  +I  MP   + VIW +LL     H  N+E+ E A   L+  DP  +  YTLLSN+Y
Sbjct: 758 RALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVY 817

Query: 449 AAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMS 508
           A AG W+KVS +R  M+   + K+ GCS VE + +L+ F+VGDK+HP+ + IY +L  + 
Sbjct: 818 ADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIY 877

Query: 509 KKLK 512
            ++K
Sbjct: 878 SEMK 881



 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 192/410 (46%), Gaps = 18/410 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +VSWN ++S Y+ N  S  ++ +F  M    +  DG T   ++K CS L     G QIHG
Sbjct: 145 VVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHG 204

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            V+++G   D    S+L++MYAK      + +VF  + +++ VSW+++I G  +N  + +
Sbjct: 205 IVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSL 264

Query: 126 AMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMIN 177
           A+K F EM   +A      + ++L   A   ++    ++     K       +   A ++
Sbjct: 265 ALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLD 324

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K   +  A+ LF      N  S+N+MI+GY       +A+ LF  L+  GL    ++
Sbjct: 325 MYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEIS 384

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           +     A + +  L  G  I+   +K    LD  +  + I+MY KC ++  A  VF  + 
Sbjct: 385 LSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR 444

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            +    W AII     +G   + L LF+ M R  ++P   TF  +L AC+       G+ 
Sbjct: 445 RRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG------GSL 498

Query: 358 CFDMMINEYKI---VPTVEHYGC-LVDILCRAGHLQQAKNIIESMPMRPN 403
            + M I+   +   + +    GC L+D+  + G +++A+ I      R N
Sbjct: 499 GYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRAN 548



 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 191/411 (46%), Gaps = 41/411 (9%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD 106
           V K C++  A++ GKQ H +++  GF    FV + L+ +Y    +   A  VFDKM  RD
Sbjct: 54  VFKECAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRD 113

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK 166
           VVSWN +I+GY+++ ++  A   F+ MP RD  +W ++L G  + G+   + EVF  M +
Sbjct: 114 VVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGR 173

Query: 167 K---------------------------------------SSVSWNAMINGYMKSGKINL 187
           +                                         V+ +A+++ Y K  +   
Sbjct: 174 EGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVE 233

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           + ++F  +P +N +SW+++I+G   N     A++ F+ + K     S     S L + + 
Sbjct: 234 SLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAA 293

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
           L+ L  G  +H+  +K  F  DG++ T+ ++MY+KC +++ A  +F    N     + A+
Sbjct: 294 LSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAM 353

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I G        +AL LF  +   G+    I+  GV  AC+    + EG + + + I    
Sbjct: 354 ITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKS-S 412

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           +   V      +D+  +   L +A  + + M  R + V W +++++   +G
Sbjct: 413 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAAHEQNG 462



 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 163/326 (50%), Gaps = 32/326 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   VSWN II+ +  N +  + L LF  ML   + PD FT   ++K C+   ++  G
Sbjct: 443 MRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG-GSLGYG 501

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD-------------- 106
            +IH  ++K G   +  V  SL++MY+K G +  A K+  +   R               
Sbjct: 502 MEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHN 561

Query: 107 ------VVSWNSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEA 156
                  VSWNS+I GY      E A  LF  M     + D FT+  +LD  A       
Sbjct: 562 KRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGL 621

Query: 157 AREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQL 212
            +++  Q+ KK   S     + +++ Y K G ++ +R +F +   R+ ++WN+MI GY  
Sbjct: 622 GKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAH 681

Query: 213 NGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL 272
           +G+  EA++LFE ++ E + P+HVT +S L A + + ++  G   + +M+K  + LD  L
Sbjct: 682 HGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKG-LEYFYMMKRDYGLDPQL 740

Query: 273 G--TSLIEMYSKCGSIESALAVFKAI 296
              ++++++  K G ++ AL + + +
Sbjct: 741 PHYSNMVDILGKSGKVKRALELIREM 766



 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/266 (33%), Positives = 143/266 (53%), Gaps = 20/266 (7%)

Query: 1   MHKPTL----VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHA 56
           MH   L    VSWN IIS YV   +S DA +LF +M+   + PD FT   V+  C+ L +
Sbjct: 559 MHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLAS 618

Query: 57  VQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDG 116
              GKQIH  V+K     D ++ S+LV+MY+K G++  +R +F+K + RD V+WN++I G
Sbjct: 619 AGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICG 678

Query: 117 YARNGNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS- 171
           YA +G  E A++LF+ M   +      T+ ++L   A  G ++   E F  M +   +  
Sbjct: 679 YAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDP 738

Query: 172 ----WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLE-AMELFEV 225
               ++ M++   KSGK+  A +L  +MP   + + W +++    ++   +E A E    
Sbjct: 739 QLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAA 798

Query: 226 LLKEGLMP---SHVTILSALSAVSGL 248
           LL+  L P   S  T+LS + A +G+
Sbjct: 799 LLR--LDPQDSSAYTLLSNVYADAGM 822


>AT1G69350.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:26069882-26072245 FORWARD
           LENGTH=787
          Length = 787

 Score =  296 bits (759), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 172/526 (32%), Positives = 288/526 (54%), Gaps = 11/526 (2%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           K   VSW  +IS Y     S  AL  F +M+   + P+  TL  V+  C  +  ++EGK 
Sbjct: 265 KKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKS 324

Query: 63  IHGYVLKIGFGFD-KFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           +HG+ ++     + + +  +LV +YA+ G++     V   + DR++V+WNSLI  YA  G
Sbjct: 325 VHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRG 384

Query: 122 NVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK---KSSVSWNA 174
            V  A+ LF +M ++    DAFT  + +      G V   +++   + +         N+
Sbjct: 385 MVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQNS 444

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +I+ Y KSG ++ A  +F Q+  R++++WNSM+ G+  NG  +EA+ LF+ +    L  +
Sbjct: 445 LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMN 504

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
            VT L+ + A S +  L  G+W+H  ++      D    T+LI+MY+KCG + +A  VF+
Sbjct: 505 EVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVFR 563

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
           A++++ +  W+++I   GMHG    A+  F +M   G KP+ + F+ VL+AC H G V+E
Sbjct: 564 AMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEE 623

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSS 414
           G   F++M   + + P  EH+ C +D+L R+G L++A   I+ MP   +  +W SL++  
Sbjct: 624 GKYYFNLM-KSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGC 682

Query: 415 RNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAG 474
           R H  ++I +   ++L +   D TG YTLLSNIYA  G+W++   +R  MK   + K  G
Sbjct: 683 RIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKVPG 742

Query: 475 CSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDT 520
            S +E   K+ RF  G+++  QT  IY  L  + + L    HV D+
Sbjct: 743 YSAIEIDQKVFRFGAGEENRIQTDEIYRFLGNL-QNLTNEEHVVDS 787



 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/474 (27%), Positives = 239/474 (50%), Gaps = 33/474 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGC--SRLHAVQEGK 61
           P    + ++I C V  H  + A+ L+ +++        F  P V++ C  SR H +  G 
Sbjct: 63  PDSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREH-LSVGG 121

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           ++HG ++K G   D  +++SL+ MY + G +  A KVFD M  RD+V+W++L+     NG
Sbjct: 122 KVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENG 181

Query: 122 NVEVAMKLF----DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
            V  A+++F    D+    DA T  ++++G A+ G +  AR V  Q+ +K         N
Sbjct: 182 EVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCN 241

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLE-AMELFEVLLKEGLM 232
           +++  Y K G +  + ++F ++  +N +SW +MIS Y   G F E A+  F  ++K G+ 
Sbjct: 242 SLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYN-RGEFSEKALRSFSEMIKSGIE 300

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLD-GVLGTSLIEMYSKCGSIESALA 291
           P+ VT+ S LS+   + ++  G+ +H F V+   D +   L  +L+E+Y++CG +     
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCET 360

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           V + ++++ +  W ++I      G+  QAL LF +M    +KP A T    ++AC + GL
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGL 420

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           V  G +    +I        V++   L+D+  ++G +  A  +   +  R + V W S+L
Sbjct: 421 VPLGKQIHGHVIRTDVSDEFVQN--SLIDMYSKSGSVDSASTVFNQIKHR-SVVTWNSML 477

Query: 412 SSSRNHGN----LEIGEYAAHNLIEADPDATGCYTLLSNIYAAA-------GKW 454
                +GN    + + +Y  H+ +E +       T L+ I A +       GKW
Sbjct: 478 CGFSQNGNSVEAISLFDYMYHSYLEMNE-----VTFLAVIQACSSIGSLEKGKW 526



 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 236/465 (50%), Gaps = 50/465 (10%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           LV+W+ ++S  + N     AL +F+ M+   + PD  T+  V++GC+ L  ++  + +HG
Sbjct: 167 LVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHG 226

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            + +  F  D+ + +SL+ MY+K G++  + ++F+K+  ++ VSW ++I  Y R    E 
Sbjct: 227 QITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEK 286

Query: 126 AMKLFDEM-PSRDAFTWTALLDGLAKCGKVEAARE--------VFDQM-PKKSSVSWNAM 175
           A++ F EM  S        L   L+ CG +   RE        V  ++ P   S+S  A+
Sbjct: 287 ALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSL-AL 345

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           +  Y + GK++    +   +  RN+++WNS+IS Y   G  ++A+ LF  ++ + + P  
Sbjct: 346 VELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDA 405

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T+ S++SA     ++  G+ IH  +++     D  +  SLI+MYSK GS++SA  VF  
Sbjct: 406 FTLASSISACENAGLVPLGKQIHGHVIRTDVS-DEFVQNSLIDMYSKSGSVDSASTVFNQ 464

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           I ++ +  W +++ G   +G + +A+ LF  M    ++ + +TF+ V+ ACS  G +++G
Sbjct: 465 IKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKG 524

Query: 356 NKC-FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP--------------- 399
                 ++I+  K + T      L+D+  + G L  A+ +  +M                
Sbjct: 525 KWVHHKLIISGLKDLFTDT---ALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYG 581

Query: 400 -------------------MRPNKVIWMSLLSSSRNHGNLEIGEY 425
                               +PN+V++M++LS+  + G++E G+Y
Sbjct: 582 MHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKY 626



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 199/418 (47%), Gaps = 25/418 (5%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR 105
           + + CS L  V    Q+H ++L  G    D    + L+  YA  G    +R VF+     
Sbjct: 7   LFRSCSSLRLVS---QLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYP 63

Query: 106 DVVSWNSLIDG----YARNGNVEVAMKLFDEMPSRDAFTWTALL-------DGLAKCGKV 154
           D   +  LI      +  +  +++  +L  E      F + ++L       + L+  GKV
Sbjct: 64  DSFMYGVLIKCNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAGSREHLSVGGKV 123

Query: 155 EAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
                +        +V   +++  Y ++G ++ A ++F  MP R+L++W++++S    NG
Sbjct: 124 HG--RIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENG 181

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
             ++A+ +F+ ++ +G+ P  VT++S +   + L  L   R +H  + +  FDLD  L  
Sbjct: 182 EVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCN 241

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           SL+ MYSKCG + S+  +F+ IA K    WTA+I        +++AL  F EM + G++P
Sbjct: 242 SLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEP 301

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG-CLVDILCRAGHLQQAKN 393
           + +T   VL++C   GL+ EG       +   ++ P  E     LV++    G L   + 
Sbjct: 302 NLVTLYSVLSSCGLIGLIREGKSVHGFAVRR-ELDPNYESLSLALVELYAECGKLSDCET 360

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNL--EIGEYAAHNLIEADPDATGCYTLLSNIYA 449
           ++  +  R N V W SL+S   + G +   +G +         PDA   +TL S+I A
Sbjct: 361 VLRVVSDR-NIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDA---FTLASSISA 414


>AT5G59600.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:24011315-24012919 REVERSE
           LENGTH=534
          Length = 534

 Score =  294 bits (752), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/451 (35%), Positives = 252/451 (55%), Gaps = 31/451 (6%)

Query: 11  LIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKI 70
           ++I     N    ++L  FR+M    L  D F +P ++K    L   + GK IH  VLK 
Sbjct: 87  VMIGACARNGYYQESLDFFREMYKDGLKLDAFIVPSLLKASRNLLDREFGKMIHCLVLKF 146

Query: 71  GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLF 130
            +  D F+ SSL++MY+K+GE+G ARKVF  + ++D+V +N++I GYA N   + A+ L 
Sbjct: 147 SYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLV 206

Query: 131 DEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKIN 186
            +M       D  TW AL+ G +     E   E+ + M           ++GY       
Sbjct: 207 KDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILELM----------CLDGYKP----- 251

Query: 187 LARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
                       +++SW S+ISG   N +  +A + F+ +L  GL P+  TI++ L A +
Sbjct: 252 ------------DVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACT 299

Query: 247 GLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTA 306
            LA + +G+ IH + V    +  G + ++L++MY KCG I  A+ +F+    K    + +
Sbjct: 300 TLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNS 359

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           +I     HGLAD+A+ELF +M   G K   +TF  +L ACSH GL D G   F +M N+Y
Sbjct: 360 MIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKY 419

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYA 426
           +IVP +EHY C+VD+L RAG L +A  +I++M M P+  +W +LL++ RNHGN+E+   A
Sbjct: 420 RIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIA 479

Query: 427 AHNLIEADPDATGCYTLLSNIYAAAGKWDKV 457
           A +L E +P+ +G   LL+++YA AG W+ V
Sbjct: 480 AKHLAELEPENSGNGLLLTSLYANAGSWESV 510



 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/237 (30%), Positives = 126/237 (53%), Gaps = 14/237 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           +KP +VSW  IIS  VHN ++  A   F+QML H L P+  T+  ++  C+ L  ++ GK
Sbjct: 249 YKPDVVSWTSIISGLVHNFQNEKAFDAFKQMLTHGLYPNSATIITLLPACTTLAYMKHGK 308

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           +IHGY +  G     FV+S+L++MY K G +  A  +F K   +  V++NS+I  YA +G
Sbjct: 309 EIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHG 368

Query: 122 NVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV-----SW 172
             + A++LFD+M +     D  T+TA+L   +  G  +  + +F  M  K  +      +
Sbjct: 369 LADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHY 428

Query: 173 NAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK 228
             M++   ++GK+  A ++   M    +L  W ++++  + +G     MEL  +  K
Sbjct: 429 ACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGN----MELARIAAK 481


>AT3G22150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7813028-7815490 FORWARD
           LENGTH=820
          Length = 820

 Score =  293 bits (751), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 172/518 (33%), Positives = 283/518 (54%), Gaps = 15/518 (2%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQML-HHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           WN +I  YV N    +++ LF + +   +++ D  T        S L  V+ G+Q HG+V
Sbjct: 285 WNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFV 344

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
            K        + +SL+ MY++ G +  +  VF  M +RDVVSWN++I  + +NG  +  +
Sbjct: 345 SKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGL 404

Query: 128 KLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAM----INGY 179
            L  EM  +    D  T TALL   +     E  ++    + ++  + +  M    I+ Y
Sbjct: 405 MLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQG-IQFEGMNSYLIDMY 463

Query: 180 MKSGKINLARQLF--GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            KSG I ++++LF       R+  +WNSMISGY  NG   +   +F  +L++ + P+ VT
Sbjct: 464 SKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVT 523

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           + S L A S +  +  G+ +H F ++   D +  + ++L++MYSK G+I+ A  +F    
Sbjct: 524 VASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTK 583

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            +    +T +I+G G HG+ ++A+ LF+ M+  G+KP AITF+ VL+ACS+ GL+DEG K
Sbjct: 584 ERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLK 643

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV-IWMSLLSSSRN 416
            F+ M   Y I P+ EHY C+ D+L R G + +A   ++ +    N   +W SLL S + 
Sbjct: 644 IFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKL 703

Query: 417 HGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAG 474
           HG LE+ E  +  L + D   + +G   LLSN+YA   KW  V  VR  M+E+G+ K+ G
Sbjct: 704 HGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVG 763

Query: 475 CSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
            S +E  G +N F+  D+ HP +  IY  +  ++K ++
Sbjct: 764 RSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMR 801



 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 251/510 (49%), Gaps = 34/510 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+WN +IS YV   R+ +A   F  M+  ++ P   +   V    S   ++++ 
Sbjct: 174 MRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKA 233

Query: 61  KQIHGYVLKIGFGF--DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
              +G +LK+G  +  D FV SS ++MYA+ G++  +R+VFD  V+R++  WN++I  Y 
Sbjct: 234 NVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYV 293

Query: 119 RNGNVEVAMKLFDEMPS-----RDAFTWTALLDGLAKCGKVEAAREV-------FDQMPK 166
           +N  +  +++LF E         D  T+      ++   +VE  R+        F ++P 
Sbjct: 294 QNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELP- 352

Query: 167 KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
              V  N+++  Y + G ++ +  +F  M  R+++SWN+MIS +  NG   E + L   +
Sbjct: 353 --IVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEM 410

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
            K+G    ++T+ + LSA S L     G+  H+F+++     +G + + LI+MYSK G I
Sbjct: 411 QKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEG-MNSYLIDMYSKSGLI 469

Query: 287 ESALAVFK--AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
             +  +F+    A +    W ++I G   +G  ++   +F +M    ++P+A+T   +L 
Sbjct: 470 RISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILP 529

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
           ACS  G VD G +     I +Y +   V     LVD+  +AG ++ A+++      R N 
Sbjct: 530 ACSQIGSVDLGKQLHGFSIRQY-LDQNVFVASALVDMYSKAGAIKYAEDMFSQTKER-NS 587

Query: 405 VIWMSLLSSSRNHGNLEIGEYAAHNLIEAD-----PDATGCYTLLSNIYAAAGKWDKVSH 459
           V + +++     HG   +GE A    +        PDA     +LS   + +G  D+   
Sbjct: 588 VTYTTMILGYGQHG---MGERAISLFLSMQESGIKPDAITFVAVLSAC-SYSGLIDEGLK 643

Query: 460 VREMMKERGVLKDAG---CSIVEHRGKLNR 486
           + E M+E   ++ +    C I +  G++ R
Sbjct: 644 IFEEMREVYNIQPSSEHYCCITDMLGRVGR 673



 Score =  169 bits (428), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 226/466 (48%), Gaps = 28/466 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLP--DGFTLPCVIKGCSRLHAVQEG 60
           KPT V WN II  ++ N+  ++ALL + +M         D +T    +K C+    ++ G
Sbjct: 67  KPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKACAETKNLKAG 126

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAK------WGEMGLARKVFDKMVDRDVVSWNSLI 114
           K +H ++++      + V +SL+NMY          E  + RKVFD M  ++VV+WN+LI
Sbjct: 127 KAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLI 186

Query: 115 DGYARNGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK-- 166
             Y + G    A + F  M      PS  +F    +   ++    ++ A   +  M K  
Sbjct: 187 SWYVKTGRNAEACRQFGIMMRMEVKPSPVSF--VNVFPAVSISRSIKKANVFYGLMLKLG 244

Query: 167 ----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMEL 222
               K     ++ I+ Y + G I  +R++F     RN+  WN+MI  Y  N   +E++EL
Sbjct: 245 DEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIEL 304

Query: 223 F-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
           F E +  + ++   VT L A SAVS L  +  GR  H F+ K+  +L  V+  SL+ MYS
Sbjct: 305 FLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYS 364

Query: 282 KCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           +CGS+  +  VF ++  + +  W  +I     +GL D+ L L  EM++ G K   IT   
Sbjct: 365 RCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTA 424

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE-SMPM 400
           +L+A S+    + G +    +I +      +  Y  L+D+  ++G ++ ++ + E S   
Sbjct: 425 LLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSY--LIDMYSKSGLIRISQKLFEGSGYA 482

Query: 401 RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLL 444
             ++  W S++S    +G+ E        ++E +  P+A    ++L
Sbjct: 483 ERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASIL 528



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 123/232 (53%), Gaps = 11/232 (4%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           +WN +IS Y  N  +    L+FR+ML  ++ P+  T+  ++  CS++ +V  GKQ+HG+ 
Sbjct: 488 TWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFS 547

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           ++     + FV S+LV+MY+K G +  A  +F +  +R+ V++ ++I GY ++G  E A+
Sbjct: 548 IRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAI 607

Query: 128 KLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP-----KKSSVSWNAMING 178
            LF  M       DA T+ A+L   +  G ++   ++F++M      + SS  +  + + 
Sbjct: 608 SLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDM 667

Query: 179 YMKSGKINLARQLFGQMPGRNLIS--WNSMISGYQLNGRFLEAMELFEVLLK 228
             + G++N A +    +     I+  W S++   +L+G    A  + E L K
Sbjct: 668 LGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAK 719



 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 165/350 (47%), Gaps = 25/350 (7%)

Query: 90  GEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR------DAFTWTA 143
           G   LAR++FD +     V WN++I G+  N     A+  +  M         DA+T+++
Sbjct: 53  GNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSS 112

Query: 144 LLDGLAKCGKVEAAREV----FDQMPKKSSVSWNAMINGYMKS------GKINLARQLFG 193
            L   A+   ++A + V       +   S V  N+++N Y+         + ++ R++F 
Sbjct: 113 TLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFD 172

Query: 194 QMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN 253
            M  +N+++WN++IS Y   GR  EA   F ++++  + PS V+ ++   AVS    +  
Sbjct: 173 NMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKK 232

Query: 254 GRWIHSFMVK--HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGL 311
               +  M+K    +  D  + +S I MY++ G IES+  VF +   + +  W  +I   
Sbjct: 233 ANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVY 292

Query: 312 GMHGLADQALELFMEMRRIGMK---PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKI 368
             +    +++ELF+E   IG K      +T++   +A S    V+ G +    +   ++ 
Sbjct: 293 VQNDCLVESIELFLEA--IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRE 350

Query: 369 VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           +P V     L+ +  R G + ++  +  SM  R + V W +++S+   +G
Sbjct: 351 LPIV-IVNSLMVMYSRCGSVHKSFGVFLSMRER-DVVSWNTMISAFVQNG 398



 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 14/242 (5%)

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS--HVTI 238
           + G   LARQLF  +P    + WN++I G+  N    EA+  +  + K     +    T 
Sbjct: 51  QDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTY 110

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA------V 292
            S L A +    L  G+ +H  +++   +   V+  SL+ MY  C +            V
Sbjct: 111 SSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKV 170

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F  +  K +  W  +I      G   +A   F  M R+ +KP  ++F+ V  A S    +
Sbjct: 171 FDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSI 230

Query: 353 DEGNKCFDMMI---NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
            + N  + +M+   +EY  V  +      + +    G ++ ++ + +S   R N  +W +
Sbjct: 231 KKANVFYGLMLKLGDEY--VKDLFVVSSAISMYAELGDIESSRRVFDSCVER-NIEVWNT 287

Query: 410 LL 411
           ++
Sbjct: 288 MI 289


>AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor  18 |
           chr5:6352771-6354828 REVERSE LENGTH=685
          Length = 685

 Score =  293 bits (751), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 177/543 (32%), Positives = 293/543 (53%), Gaps = 74/543 (13%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M + + VS+  +I  Y  N++ ++A+ LFR+M +  ++ +  TL  VI  CS L  + + 
Sbjct: 133 MPERSCVSYTTLIKGYAQNNQWSEAMELFREMRNLGIMLNEVTLATVISACSHLGGIWDC 192

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMY-------------------------------AKW 89
           + +    +K+      FV ++L++MY                               +K 
Sbjct: 193 RMLQSLAIKLKLEGRVFVSTNLLHMYCLCLCLKDARKLFDEMPERNLVTWNVMLNGYSKA 252

Query: 90  GEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM------PSR----DAF 139
           G +  A ++FD++ ++D+VSW ++IDG  R   ++ A+  + EM      PS     D  
Sbjct: 253 GLIEQAEELFDQITEKDIVSWGTMIDGCLRKNQLDEALVYYTEMLRCGMKPSEVMMVDLL 312

Query: 140 TWTALLDGLAK-----------------------------CGKVEAAREVFDQMPKKSSV 170
           + +A   G +K                                ++ A + F+   K    
Sbjct: 313 SASARSVGSSKGLQLHGTIVKRGFDCYDFLQATIIHFYAVSNDIKLALQQFEASVKDHIA 372

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF-EVLLKE 229
           S NA+I G++K+G +  AR++F Q   +++ SWN+MISGY  +     A+ LF E++   
Sbjct: 373 SRNALIAGFVKNGMVEQAREVFDQTHDKDIFSWNAMISGYAQSLSPQLALHLFREMISSS 432

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
            + P  +T++S  SA+S L  L  G+  H ++       +  L  ++I+MY+KCGSIE+A
Sbjct: 433 QVKPDAITMVSVFSAISSLGSLEEGKRAHDYLNFSTIPPNDNLTAAIIDMYAKCGSIETA 492

Query: 290 LAVF---KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           L +F   K I++  +  W AII G   HG A  AL+L+ +++ + +KP++ITF+GVL+AC
Sbjct: 493 LNIFHQTKNISSSTISPWNAIICGSATHGHAKLALDLYSDLQSLPIKPNSITFVGVLSAC 552

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
            H GLV+ G   F+ M +++ I P ++HYGC+VD+L +AG L++AK +I+ MP++ + +I
Sbjct: 553 CHAGLVELGKTYFESMKSDHGIEPDIKHYGCMVDLLGKAGRLEEAKEMIKKMPVKADVMI 612

Query: 407 WMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
           W  LLS+SR HGN+EI E AA  L   DP   GC  +LSN+YA AG+W+ V+ VRE M+ 
Sbjct: 613 WGMLLSASRTHGNVEIAELAATELAAIDPSHGGCKVMLSNVYADAGRWEDVALVREEMRT 672

Query: 467 RGV 469
           R V
Sbjct: 673 RDV 675



 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 144/573 (25%), Positives = 229/573 (39%), Gaps = 151/573 (26%)

Query: 44  LPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV 103
           L   +  C+  + V  G+QIH  VLK G   + ++ +S++NMYAK   +  A  VF    
Sbjct: 44  LVSALGSCASSNDVTCGRQIHCRVLKSGLDSNGYICNSVLNMYAKCRLLADAESVFRDHA 103

Query: 104 DRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQ 163
             D  S+N ++DGY R+  +  A+KLFD MP R   ++T L+ G A+  +   A E+F +
Sbjct: 104 KLDSASFNIMVDGYVRSRRLWDALKLFDVMPERSCVSYTTLIKGYAQNNQWSEAMELFRE 163

Query: 164 MPK----KSSVSWNAMINGYMKSGKI-----------------------NL--------- 187
           M       + V+   +I+     G I                       NL         
Sbjct: 164 MRNLGIMLNEVTLATVISACSHLGGIWDCRMLQSLAIKLKLEGRVFVSTNLLHMYCLCLC 223

Query: 188 ---ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV------------------- 225
              AR+LF +MP RNL++WN M++GY   G   +A ELF+                    
Sbjct: 224 LKDARKLFDEMPERNLVTWNVMLNGYSKAGLIEQAEELFDQITEKDIVSWGTMIDGCLRK 283

Query: 226 ------------LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
                       +L+ G+ PS V ++  LSA +       G  +H  +VK  FD    L 
Sbjct: 284 NQLDEALVYYTEMLRCGMKPSEVMMVDLLSASARSVGSSKGLQLHGTIVKRGFDCYDFLQ 343

Query: 274 TSLIEMYS-------------------------------KCGSIESALAVFKAIANKKLG 302
            ++I  Y+                               K G +E A  VF    +K + 
Sbjct: 344 ATIIHFYAVSNDIKLALQQFEASVKDHIASRNALIAGFVKNGMVEQAREVFDQTHDKDIF 403

Query: 303 HWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
            W A+I G         AL LF EM     +KP AIT + V +A S  G ++EG +  D 
Sbjct: 404 SWNAMISGYAQSLSPQLALHLFREMISSSQVKPDAITMVSVFSAISSLGSLEEGKRAHDY 463

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI--------------------------- 394
           + N   I P       ++D+  + G ++ A NI                           
Sbjct: 464 L-NFSTIPPNDNLTAAIIDMYAKCGSIETALNIFHQTKNISSSTISPWNAIICGSATHGH 522

Query: 395 ----------IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNL-----IEADPDATG 439
                     ++S+P++PN + ++ +LS+  + G +E+G+    ++     IE D    G
Sbjct: 523 AKLALDLYSDLQSLPIKPNSITFVGVLSACCHAGLVELGKTYFESMKSDHGIEPDIKHYG 582

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           C   L       GK  ++   +EM+K+  V  D
Sbjct: 583 CMVDL------LGKAGRLEEAKEMIKKMPVKAD 609


>AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide
           repeat (PPR) superfamily protein | chr5:1010894-1013584
           REVERSE LENGTH=896
          Length = 896

 Score =  293 bits (749), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 193/654 (29%), Positives = 316/654 (48%), Gaps = 57/654 (8%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGKQIH 64
           + SWN ++S  V   +S+ A  LF +M   +    D FTL  ++  C+    +  G+++H
Sbjct: 249 VASWNTVVSSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELH 308

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           G  ++IG   +  V ++L+  Y+K+ +M     +++ M+ +D V++  +I  Y   G V+
Sbjct: 309 GRAIRIGLMQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVD 368

Query: 125 VAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM-------------------- 164
            A+++F  +  ++  T+ AL+ G  + G    A ++F  M                    
Sbjct: 369 SAVEIFANVTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACG 428

Query: 165 ---PKKSS-------VSWNAMINGYMKSGKINL---------ARQLFGQMPGRNLIS--- 202
               KK S       + +    N  +++  +++         A ++F Q P  NL S   
Sbjct: 429 LVSEKKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPS-NLDSSKA 487

Query: 203 WNSMISGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
             S+I GY  NG   +A+ LF   L ++ L    V++   L+    L     G  IH + 
Sbjct: 488 TTSIIGGYARNGLPDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYA 547

Query: 262 VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
           +K  +  D  LG SLI MY+KC   + A+ +F  +    +  W ++I    +    D+AL
Sbjct: 548 LKAGYFSDISLGNSLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEAL 607

Query: 322 ELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK---CFDMMINE---YKIVPTVEHY 375
            L+  M    +KP  IT   V++A  +     E NK   C D+ ++    Y I PT EHY
Sbjct: 608 ALWSRMNEKEIKPDIITLTLVISAFRYT----ESNKLSSCRDLFLSMKTIYDIEPTTEHY 663

Query: 376 GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP 435
              V +L   G L++A++ I SMP++P   +  +LL S R H N  + +  A  ++   P
Sbjct: 664 TAFVRVLGHWGLLEEAEDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKP 723

Query: 436 DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHP 495
           +    Y L SNIY+A+G W +   +RE M+ERG  K    S + H  K++ F   D SHP
Sbjct: 724 ETPSEYILKSNIYSASGFWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHP 783

Query: 496 QTKAIYAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMER 555
           Q K IY  L  +  +    G+ P+T  VL                  +LA+++G+L+   
Sbjct: 784 QEKDIYRGLEILIMECLKVGYEPNTEYVL-QEVDEFMKKSFLFHHSAKLAVTYGILSSNT 842

Query: 556 R-TPIRIMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           R  P+R+MKN+ +C DCH   K +S +  REI++RD+S FHHF NG CSC D W
Sbjct: 843 RGKPVRVMKNVMLCGDCHEFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896



 Score =  135 bits (340), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 123/525 (23%), Positives = 232/525 (44%), Gaps = 62/525 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQE 59
           +  PT+VS+  +IS +   +   +AL +F +M    L+ P+ +T   ++  C R+     
Sbjct: 140 LSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSL 199

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAK--WGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
           G QIHG ++K GF    FV +SL+++Y K          K+FD++  RDV SWN+++   
Sbjct: 200 GIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSL 259

Query: 118 ARNGNVEVAMKLFDEMP-----SRDAFTWTALLDGLAKCGKVEAARE------------- 159
            + G    A  LF EM        D+FT + LL        +   RE             
Sbjct: 260 VKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLMQE 319

Query: 160 ----------------------VFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPG 197
                                 +++ M  + +V++  MI  YM  G ++ A ++F  +  
Sbjct: 320 LSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTE 379

Query: 198 RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWI 257
           +N I++N++++G+  NG  L+A++LF  +L+ G+  +  ++ SA+ A   ++       I
Sbjct: 380 KNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQI 439

Query: 258 HSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK--KLGHWTAIIVGLGMHG 315
           H F +K     +  + T+L++M ++C  +  A  +F    +        T+II G   +G
Sbjct: 440 HGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSIIGGYARNG 499

Query: 316 LADQALELFMEM---RRIGMKPHAITFIGVLNACSHKGLVDEGNK--CFDMMINEYKIVP 370
           L D+A+ LF      +++ +   ++T I  L  C   G  + G +  C+ +    +    
Sbjct: 500 LPDKAVSLFHRTLCEQKLFLDEVSLTLI--LAVCGTLGFREMGYQIHCYALKAGYFS--- 554

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI-WMSLLSSS--RNHGNLEIGEYAA 427
            +     L+ +  +      A  I  +  MR + VI W SL+S    + +G+  +  ++ 
Sbjct: 555 DISLGNSLISMYAKCCDSDDAIKIFNT--MREHDVISWNSLISCYILQRNGDEALALWSR 612

Query: 428 HNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
            N  E  PD      ++S         +K+S  R++      + D
Sbjct: 613 MNEKEIKPDIITLTLVISAFRYTES--NKLSSCRDLFLSMKTIYD 655



 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 194/439 (44%), Gaps = 67/439 (15%)

Query: 40  DGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVF 99
           DGF    +++  ++ H V+  K +H   LK+     + + ++L++ Y K G    A  VF
Sbjct: 81  DGFFY--LLRLSAQYHDVEVTKAVHASFLKLREEKTR-LGNALISTYLKLGFPREAILVF 137

Query: 100 DKMVDRDVVSWNSLIDGYARNGNVEV-AMKLFDEMP-----SRDAFTWTALLDGLAKCGK 153
             +    VVS+ +LI G++R  N+E+ A+K+F  M        + +T+ A+L    +  +
Sbjct: 138 VSLSSPTVVSYTALISGFSR-LNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSR 196

Query: 154 VEAAREVFDQMPKK----SSVSWNAMINGYMKS--GKINLARQLFGQMPGRNLISWNSMI 207
                ++   + K     S    N++++ Y K      +   +LF ++P R++ SWN+++
Sbjct: 197 FSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVV 256

Query: 208 SGYQLNGRFLEAMELF-EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK--- 263
           S     G+  +A +LF E+   EG      T+ + LS+ +  +VL  GR +H   ++   
Sbjct: 257 SSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGL 316

Query: 264 ---------------HCFDL-------------DGVLGTSLIEMYSKCGSIESALAVFKA 295
                            +D+             D V  T +I  Y   G ++SA+ +F  
Sbjct: 317 MQELSVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFAN 376

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           +  K    + A++ G   +G   +AL+LF +M + G++    +    ++AC   GLV E 
Sbjct: 377 VTEKNTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDAC---GLVSE- 432

Query: 356 NKCFDMMINEYKIVPTVEHYGC----LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
            K     I+ + I        C    L+D+  R   +  A+ + +          W S L
Sbjct: 433 -KKVSEQIHGFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQ---------WPSNL 482

Query: 412 SSSRNHGNLEIGEYAAHNL 430
            SS+   ++ IG YA + L
Sbjct: 483 DSSKATTSI-IGGYARNGL 500



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 117/242 (48%), Gaps = 17/242 (7%)

Query: 130 FDEMPSRDAFTWTALLDGL-------AKCGKVEAAREV---FDQMPKKSSVSWNAMINGY 179
           FD+  + D     +++DG        A+   VE  + V   F ++ ++ +   NA+I+ Y
Sbjct: 68  FDKEETEDI---ESVIDGFFYLLRLSAQYHDVEVTKAVHASFLKLREEKTRLGNALISTY 124

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM-PSHVTI 238
           +K G    A  +F  +    ++S+ ++ISG+      +EA+++F  + K GL+ P+  T 
Sbjct: 125 LKLGFPREAILVFVSLSSPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTF 184

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK--CGSIESALAVFKAI 296
           ++ L+A   ++    G  IH  +VK  F     +  SL+ +Y K    S +  L +F  I
Sbjct: 185 VAILTACVRVSRFSLGIQIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEI 244

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITFIGVLNACSHKGLVDEG 355
             + +  W  ++  L   G + +A +LF EM R+ G    + T   +L++C+   ++  G
Sbjct: 245 PQRDVASWNTVVSSLVKEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRG 304

Query: 356 NK 357
            +
Sbjct: 305 RE 306


>AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:18527680-18530007 FORWARD
           LENGTH=775
          Length = 775

 Score =  289 bits (739), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 158/482 (32%), Positives = 281/482 (58%), Gaps = 11/482 (2%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + SW  II+    +    ++  +F +M +  + PDG  + C+I    ++  V +GK  HG
Sbjct: 296 MFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHG 355

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVSWNSLIDGYARNGNVE 124
           +V++  F  D  V +SL++MY K+  + +A K+F ++ +  +  +WN+++ GY +     
Sbjct: 356 FVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHV 415

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS---SVSW-NAMI 176
             ++LF ++ +     D+ + T+++   +  G V   + +   + K S   ++S  N++I
Sbjct: 416 KCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLI 475

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           + Y K G + +A ++F +    N+I+WN+MI+ Y    +  +A+ LF+ ++ E   PS +
Sbjct: 476 DLYGKMGDLTVAWRMFCE-ADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSI 534

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T+++ L A      L  G+ IH ++ +   +++  L  +LI+MY+KCG +E +  +F A 
Sbjct: 535 TLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAG 594

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
             K    W  +I G GMHG  + A+ LF +M    +KP   TF+ +L+AC+H GLV++G 
Sbjct: 595 NQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGK 654

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
           K F + +++Y + P ++HY CLVD+L R+G+L++A++ + SMP  P+ VIW +LLSS   
Sbjct: 655 KLF-LKMHQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLSSCMT 713

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           HG  E+G   A   + +DP   G Y +L+N+Y+AAGKW++    REMM+E GV K AG S
Sbjct: 714 HGEFEMGIRMAERAVASDPQNDGYYIMLANMYSAAGKWEEAERAREMMRESGVGKRAGHS 773

Query: 477 IV 478
           +V
Sbjct: 774 VV 775



 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 223/457 (48%), Gaps = 27/457 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQM--LHHDL-LPDGFTLPCVIKGCSRLHAV 57
           M    +V+W  IIS +V N  S   L    +M     D+  P+  TL C  + CS L A+
Sbjct: 187 MPDRDVVAWTAIISGHVQNGESEGGLGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGAL 246

Query: 58  QEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
           +EG+ +HG+ +K G    KFVQSS+ + Y+K G    A   F ++ D D+ SW S+I   
Sbjct: 247 KEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASL 306

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAARE----VFDQMPKKSS 169
           AR+G++E +  +F EM ++    D    + L++ L K   V   +     V        S
Sbjct: 307 ARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDS 366

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK 228
              N++++ Y K   +++A +LF ++    N  +WN+M+ GY      ++ +ELF  +  
Sbjct: 367 TVCNSLLSMYCKFELLSVAEKLFCRISEEGNKEAWNTMLKGYGKMKCHVKCIELFRKIQN 426

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
            G+     +  S +S+ S +  +  G+ +H ++VK   DL   +  SLI++Y K G +  
Sbjct: 427 LGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTV 486

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
           A  +F   A+  +  W A+I        +++A+ LF  M     KP +IT + +L AC +
Sbjct: 487 AWRMF-CEADTNVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVN 545

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEH------YGCLVDILCRAGHLQQAKNIIESMPMRP 402
            G ++ G      MI+ Y  +   EH         L+D+  + GHL++++ + ++   + 
Sbjct: 546 TGSLERGQ-----MIHRY--ITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQK- 597

Query: 403 NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG 439
           + V W  ++S    HG++E        + E+D   TG
Sbjct: 598 DAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTG 634



 Score =  162 bits (410), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 235/518 (45%), Gaps = 60/518 (11%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN II  +  N     +L  F  ML     PD FT P V+  C+ L     G  +HG VL
Sbjct: 93  WNSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVL 152

Query: 69  KIGFGFDK--FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           K G GFD+   V +S V  Y+K G +  A  VFD+M DRDVV+W ++I G+ +NG  E  
Sbjct: 153 KHG-GFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGG 211

Query: 127 MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAARE-------VFDQMPKKSSVSWNAM 175
           +    +M S     D      L  G   C  + A +E               S    ++M
Sbjct: 212 LGYLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSM 271

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
            + Y KSG  + A   F ++   ++ SW S+I+    +G   E+ ++F  +  +G+ P  
Sbjct: 272 FSFYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDG 331

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
           V I   ++ +  + ++  G+  H F+++HCF LD  +  SL+ MY K   +  A  +F  
Sbjct: 332 VVISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCR 391

Query: 296 IA---NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           I+   NK+   W  ++ G G      + +ELF +++ +G++  + +   V+++CSH G V
Sbjct: 392 ISEEGNKEA--WNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAV 449

Query: 353 DEGNK--CF------DMMINEYKIVPTVEHYGCLVDI------LCRAG------------ 386
             G    C+      D+ I+   +   ++ YG + D+       C A             
Sbjct: 450 LLGKSLHCYVVKTSLDLTIS--VVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIAS 507

Query: 387 --HLQQAKNIIE------SMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDAT 438
             H +Q++  I       S   +P+ +  ++LL +  N G+LE G+     + E + +  
Sbjct: 508 YVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMN 567

Query: 439 -GCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
                 L ++YA  G  +K    RE+  + G  KDA C
Sbjct: 568 LSLSAALIDMYAKCGHLEK---SRELF-DAGNQKDAVC 601



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 166/374 (44%), Gaps = 15/374 (4%)

Query: 51  CSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSW 110
           C +  +++  ++ +  ++  G   + FV S L++ YA +G+  L+ +VF  +  RD+  W
Sbjct: 34  CDQSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLW 93

Query: 111 NSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK 166
           NS+I  +  NG+   ++  F  M     S D FT   ++   A+         V   + K
Sbjct: 94  NSIIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLK 153

Query: 167 KSSVSWNAMING-----YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAME 221
                 N  +       Y K G +  A  +F +MP R++++W ++ISG+  NG     + 
Sbjct: 154 HGGFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLG 213

Query: 222 LFEVLLKEGL---MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIE 278
               +   G     P+  T+     A S L  L  GR +H F VK+       + +S+  
Sbjct: 214 YLCKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFS 273

Query: 279 MYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
            YSK G+   A   F+ + ++ +  WT+II  L   G  +++ ++F EM+  GM P  + 
Sbjct: 274 FYSKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVV 333

Query: 339 FIGVLNACSHKGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
              ++N      LV +G      +I   + +  TV     L+ + C+   L  A+ +   
Sbjct: 334 ISCLINELGKMMLVPQGKAFHGFVIRHCFSLDSTV--CNSLLSMYCKFELLSVAEKLFCR 391

Query: 398 MPMRPNKVIWMSLL 411
           +    NK  W ++L
Sbjct: 392 ISEEGNKEAWNTML 405


>AT4G19191.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10496228-10498192 FORWARD
           LENGTH=654
          Length = 654

 Score =  288 bits (738), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 170/520 (32%), Positives = 276/520 (53%), Gaps = 13/520 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +    +WN ++S +  +  ++ A  LFR+M  +++ PD  T+  +I+  S   +++  
Sbjct: 113 MPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLL 172

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV--DRDVVSWNSLIDGYA 118
           + +H   +++G      V ++ ++ Y K G++  A+ VF+ +   DR VVSWNS+   Y+
Sbjct: 173 EAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYS 232

Query: 119 RNGNVEVAMKLFDEMPSRDAFT--WTALLDGLAKCGKVEAARE-------VFDQMPKKSS 169
             G    A  L+  M  R+ F    +  ++  A C   E   +              +  
Sbjct: 233 VFGEAFDAFGLYCLML-REEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDI 291

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            + N  I+ Y KS     AR LF  M  R  +SW  MISGY   G   EA+ LF  ++K 
Sbjct: 292 EAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKS 351

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL-GTSLIEMYSKCGSIES 288
           G  P  VT+LS +S       L  G+WI +    +    D V+   +LI+MYSKCGSI  
Sbjct: 352 GEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHE 411

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
           A  +F     K +  WT +I G  ++G+  +AL+LF +M  +  KP+ ITF+ VL AC+H
Sbjct: 412 ARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAH 471

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
            G +++G + F +M   Y I P ++HY C+VD+L R G L++A  +I +M  +P+  IW 
Sbjct: 472 SGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWG 531

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
           +LL++ + H N++I E AA +L   +P     Y  ++NIYAAAG WD  + +R +MK+R 
Sbjct: 532 ALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRN 591

Query: 469 VLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMS 508
           + K  G S+++  GK + F VG+  H + + IY  L  +S
Sbjct: 592 IKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNGLS 631



 Score =  183 bits (464), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 207/426 (48%), Gaps = 33/426 (7%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           +WNL I   V+ +   ++LLLFR+M      P+ FT P V K C+RL  V   + +H ++
Sbjct: 19  AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 78

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           +K  F  D FV ++ V+M+ K   +  A KVF++M +RD  +WN+++ G+ ++G+ + A 
Sbjct: 79  IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAF 138

Query: 128 KLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK---------KSSVSWNAMING 178
            LF EM   +    +  +  L +    E + ++ + M           + +V+ N  I+ 
Sbjct: 139 SLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA-NTWIST 197

Query: 179 YMKSGKINLARQLFGQMP--GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           Y K G ++ A+ +F  +    R ++SWNSM   Y + G   +A  L+ ++L+E   P   
Sbjct: 198 YGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLS 257

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T ++  ++      L  GR IHS  +    D D     + I MYSK     SA  +F  +
Sbjct: 258 TFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIM 317

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
            ++    WT +I G    G  D+AL LF  M + G KP  +T + +++ C   G ++ G 
Sbjct: 318 TSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGK 377

Query: 357 KCFDMMINEYKIVPTVEHYGC----------LVDILCRAGHLQQAKNIIESMPMRPNKVI 406
                      I    + YGC          L+D+  + G + +A++I ++ P +   V 
Sbjct: 378 ----------WIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK-TVVT 426

Query: 407 WMSLLS 412
           W ++++
Sbjct: 427 WTTMIA 432


>AT1G56570.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:21195804-21197721 FORWARD
           LENGTH=611
          Length = 611

 Score =  287 bits (735), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/530 (31%), Positives = 295/530 (55%), Gaps = 12/530 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +V+W  +I+ Y  ++ +  A   F +M+     P+ FTL  V+K C  +  +  G
Sbjct: 71  MPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRNMKVLAYG 130

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWG-EMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
             +HG V+K+G     +V ++++NMYA     M  A  +F  +  ++ V+W +LI G+  
Sbjct: 131 ALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTH 190

Query: 120 NGNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
            G+    +K++ +M   +A    +  T  +   A    V   +++   + K+   S    
Sbjct: 191 LGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPV 250

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            N++++ Y + G ++ A+  F +M  ++LI+WN++IS  + +    EA+ +F+    +G 
Sbjct: 251 MNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELERSDSS-EALLMFQRFESQGF 309

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           +P+  T  S ++A + +A L  G+ +H  + +  F+ +  L  +LI+MY+KCG+I  +  
Sbjct: 310 VPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQR 369

Query: 292 VFKAIANKK-LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
           VF  I +++ L  WT++++G G HG   +A+ELF +M   G++P  I F+ VL+AC H G
Sbjct: 370 VFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAG 429

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LV++G K F++M +EY I P  + Y C+VD+L RAG + +A  ++E MP +P++  W ++
Sbjct: 430 LVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAI 489

Query: 411 LSSSRNHG-NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           L + + H  N  I   AA  ++E  P   G Y +LS IYAA GKW   + VR+MM+  G 
Sbjct: 490 LGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGN 549

Query: 470 LKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPD 519
            K+AG S +    ++  F V DK  P   ++Y+ L  + ++ + AG+VP+
Sbjct: 550 KKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGYVPE 599



 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 165/348 (47%), Gaps = 11/348 (3%)

Query: 80  SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM----PS 135
           ++L+  Y + G +  AR +FD+M DRDVV+W ++I GYA +     A + F EM     S
Sbjct: 49  TNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTS 108

Query: 136 RDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMK-SGKINLARQ 190
            + FT +++L        +     V   + K     S    NAM+N Y   S  +  A  
Sbjct: 109 PNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACL 168

Query: 191 LFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV 250
           +F  +  +N ++W ++I+G+   G  +  +++++ +L E    +   I  A+ A + +  
Sbjct: 169 IFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDS 228

Query: 251 LGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVG 310
           +  G+ IH+ ++K  F  +  +  S++++Y +CG +  A   F  + +K L  W  +I  
Sbjct: 229 VTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISE 288

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
           L     + +AL +F      G  P+  TF  ++ AC++   ++ G +    +        
Sbjct: 289 LERSD-SSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRR-GFNK 346

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
            VE    L+D+  + G++  ++ +   +  R N V W S++    +HG
Sbjct: 347 NVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHG 394



 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 132/290 (45%), Gaps = 9/290 (3%)

Query: 165 PKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFE 224
           PKK  +    +I  Y + G +  AR LF +MP R++++W +MI+GY  +     A E F 
Sbjct: 41  PKKHHILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFH 100

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
            ++K+G  P+  T+ S L +   + VL  G  +H  +VK   +    +  +++ MY+ C 
Sbjct: 101 EMVKQGTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCS 160

Query: 285 -SIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM--RRIGMKPHAITFIG 341
            ++E+A  +F+ I  K    WT +I G    G     L+++ +M      + P+ IT   
Sbjct: 161 VTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITI-- 218

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
            + A +    V  G +    +I        +     ++D+ CR G+L +AK+    M  +
Sbjct: 219 AVRASASIDSVTTGKQIHASVIKR-GFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK 277

Query: 402 PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAA 451
            + + W +L+S      + E          E+      CYT  S + A A
Sbjct: 278 -DLITWNTLISELERSDSSE--ALLMFQRFESQGFVPNCYTFTSLVAACA 324


>AT1G33350.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:12090071-12091687 REVERSE
           LENGTH=538
          Length = 538

 Score =  287 bits (735), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 141/371 (38%), Positives = 229/371 (61%), Gaps = 5/371 (1%)

Query: 142 TALLDGLAK-CGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
           TALL   A     +  AR++FD+M +++ VSW AM++GY +SG I+ A  LF  MP R++
Sbjct: 165 TALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDV 224

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
            SWN++++    NG FLEA+ LF  ++ E  + P+ VT++  LSA +    L   + IH+
Sbjct: 225 PSWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHA 284

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
           F  +     D  +  SL+++Y KCG++E A +VFK  + K L  W ++I    +HG +++
Sbjct: 285 FAYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEE 344

Query: 320 ALELFMEMRRIGM---KPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
           A+ +F EM ++ +   KP  ITFIG+LNAC+H GLV +G   FD+M N + I P +EHYG
Sbjct: 345 AIAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYG 404

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD 436
           CL+D+L RAG   +A  ++ +M M+ ++ IW SLL++ + HG+L++ E A  NL+  +P+
Sbjct: 405 CLIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPN 464

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQ 496
             G   +++N+Y   G W++    R+M+K +   K  G S +E   ++++F   DKSHP+
Sbjct: 465 NGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPE 524

Query: 497 TKAIYAKLREM 507
           T+ IY  L  +
Sbjct: 525 TEEIYMILDSL 535



 Score =  133 bits (334), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 174/377 (46%), Gaps = 78/377 (20%)

Query: 22  SNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQS 80
           ++ A   FR M++  +  P+ F  P V+K    L +      +H ++ K GF     VQ+
Sbjct: 106 ASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQT 165

Query: 81  SLVNMYAKW-GEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAF 139
           +L++ YA     + LAR++FD+M +R+VVSW +++ GYAR+G++  A+ LF++MP RD  
Sbjct: 166 ALLHSYASSVSHITLARQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVP 225

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---------------------------- 171
           +W A+L    + G    A  +F +M  + S+                             
Sbjct: 226 SWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAF 285

Query: 172 ------------WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA 219
                        N++++ Y K G +  A  +F     ++L +WNSMI+ + L+GR  EA
Sbjct: 286 AYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEA 345

Query: 220 MELFEVLLK---EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSL 276
           + +FE ++K     + P H+T +  L+A +   ++  GR          FDL        
Sbjct: 346 IAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGY--------FDL-------- 389

Query: 277 IEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHA 336
             M ++ G IE            ++ H+  +I  LG  G  D+ALE+   M+   MK   
Sbjct: 390 --MTNRFG-IE-----------PRIEHYGCLIDLLGRAGRFDEALEVMSTMK---MKADE 432

Query: 337 ITFIGVLNACSHKGLVD 353
             +  +LNAC   G +D
Sbjct: 433 AIWGSLLNACKIHGHLD 449



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 18/235 (7%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           SWN I++    N    +A+ LFR+M++   + P+  T+ CV+  C++   +Q  K IH +
Sbjct: 226 SWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAF 285

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
             +     D FV +SLV++Y K G +  A  VF     + + +WNS+I+ +A +G  E A
Sbjct: 286 AYRRDLSSDVFVSNSLVDLYGKCGNLEEASSVFKMASKKSLTAWNSMINCFALHGRSEEA 345

Query: 127 MKLFDEM-------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNA 174
           + +F+EM          D  T+  LL+     G V   R  FD M  +  +      +  
Sbjct: 346 IAVFEEMMKLNINDIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGC 405

Query: 175 MINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLK 228
           +I+   ++G+ + A ++   M  + +   W S+++  +++G     ++L EV +K
Sbjct: 406 LIDLLGRAGRFDEALEVMSTMKMKADEAIWGSLLNACKIHGH----LDLAEVAVK 456


>AT5G08490.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2745208-2747757 REVERSE
           LENGTH=849
          Length = 849

 Score =  287 bits (734), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/557 (30%), Positives = 298/557 (53%), Gaps = 46/557 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           M    LVSWN++I+ Y  N     A  LF  ++H  D+ PD  T+  ++  C++L  +  
Sbjct: 289 MGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLAS 348

Query: 60  GKQIHGYVLKIGFGF-DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSW----NSLI 114
           GK+IH Y+L+  +   D  V ++L++ YA++G+   A   F  M  +D++SW    ++  
Sbjct: 349 GKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFA 408

Query: 115 DGYARNGNVEVAMKLFDEMPSRDAFTW--------------------------------- 141
           D   +   + +   L +E  + D+ T                                  
Sbjct: 409 DSPKQFQFLNLLHHLLNEAITLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEE 468

Query: 142 -----TALLDGLAKCGKVEAAREVFDQMPKKSS-VSWNAMINGYMKSGKINLARQLFGQM 195
                 ALLD  AKCG VE A ++F  + ++ + VS+N++++GY+ SG  + A+ LF +M
Sbjct: 469 EPKLGNALLDAYAKCGNVEYAHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEM 528

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
              +L +W+ M+  Y  +    EA+ +F  +   G+ P+ VTI++ L   + LA L   R
Sbjct: 529 STTDLTTWSLMVRIYAESCCPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVR 588

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHG 315
             H ++++     D  L  +L+++Y+KCGS++ A +VF++ A + L  +TA++ G  +HG
Sbjct: 589 QCHGYIIRGGLG-DIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHG 647

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY 375
              +AL ++  M    +KP  +    +L AC H GL+ +G + +D +   + + PT+E Y
Sbjct: 648 RGKEALMIYSHMTESNIKPDHVFITTMLTACCHAGLIQDGLQIYDSIRTVHGMKPTMEQY 707

Query: 376 GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP 435
            C VD++ R G L  A + +  MP+ PN  IW +LL +   +  +++G   A++L++A+ 
Sbjct: 708 ACAVDLIARGGRLDDAYSFVTQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAES 767

Query: 436 DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHP 495
           D TG + L+SN+YAA  KW+ V  +R +MK++ + K AGCS +E  G+ N F+ GD SHP
Sbjct: 768 DDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHP 827

Query: 496 QTKAIYAKLREMSKKLK 512
           +  +I+  +  +  ++K
Sbjct: 828 RRDSIFDLVNALYLQMK 844



 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 233/496 (46%), Gaps = 52/496 (10%)

Query: 7   VSWNLI-----ISCYVHNHRSNDALLLFRQMLHHD-LLPDGFTLPCVIKGCSRLHAVQEG 60
           V WN++     +SC        + +  F+ M   D   P   T   V+  C RL     G
Sbjct: 88  VVWNIVLTGLSVSC------GRETMRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNG 141

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEM-GLARKVFDKMVDRDVVSWNSLIDGYAR 119
           K +H Y++K G   D  V ++LV+MYAK+G +   A   FD + D+DVVSWN++I G++ 
Sbjct: 142 KSMHSYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSE 201

Query: 120 NGNVEVAMKLFDEM---PSRDAFTWTALLDGLAKCGKVE------AAREVFDQMPKKSSV 170
           N  +  A + F  M   P+     +  + + L  C  ++      + R++   + ++S +
Sbjct: 202 NNMMADAFRSFCLMLKEPTEP--NYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWL 259

Query: 171 SW-----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
                  N++++ Y++ G+I  A  LF +M  ++L+SWN +I+GY  N  + +A +LF  
Sbjct: 260 QTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHN 319

Query: 226 LLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL-DGVLGTSLIEMYSKC 283
           L+ +G + P  VTI+S L   + L  L +G+ IHS++++H + L D  +G +LI  Y++ 
Sbjct: 320 LVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARF 379

Query: 284 GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
           G   +A   F  ++ K +  W AI+          Q L L   +    +   ++T + +L
Sbjct: 380 GDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAITLDSVTILSLL 439

Query: 344 NACSHK---GLVDEGNKCFDMMINEYKIVPTVEHY-------GCLVDILCRAGHLQQAKN 393
             C +    G V E        ++ Y +   + H          L+D   + G+++ A  
Sbjct: 440 KFCINVQGIGKVKE--------VHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEYAHK 491

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGK 453
           I   +  R   V + SLLS   N G+ +  +     +   D      ++L+  IYA +  
Sbjct: 492 IFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTD---LTTWSLMVRIYAESCC 548

Query: 454 WDKVSHVREMMKERGV 469
            ++   V   ++ RG+
Sbjct: 549 PNEAIGVFREIQARGM 564



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 230/491 (46%), Gaps = 54/491 (10%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLH---AVQEGKQ 62
           +VSWN II+ +  N+   DA   F  ML     P+  T+  V+  C+ +    A + G+Q
Sbjct: 189 VVSWNAIIAGFSENNMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQ 248

Query: 63  IHGYVLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           IH YV++  +     FV +SLV+ Y + G +  A  +F +M  +D+VSWN +I GYA N 
Sbjct: 249 IHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNC 308

Query: 122 NVEVAMKLFDEMP-----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-----SVS 171
               A +LF  +      S D+ T  ++L   A+   + + +E+   + + S     +  
Sbjct: 309 EWFKAFQLFHNLVHKGDVSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSV 368

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            NA+I+ Y + G  + A   F  M  +++ISWN+++  +  + +  + + L   LL E +
Sbjct: 369 GNALISFYARFGDTSAAYWAFSLMSTKDIISWNAILDAFADSPKQFQFLNLLHHLLNEAI 428

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF---DLDGVLGTSLIEMYSKCGSIES 288
               VTILS L     +  +G  + +H + VK      + +  LG +L++ Y+KCG++E 
Sbjct: 429 TLDSVTILSLLKFCINVQGIGKVKEVHGYSVKAGLLHDEEEPKLGNALLDAYAKCGNVEY 488

Query: 289 ALAVFKAIANKK-LGHWTAIIVGLGMHGLADQALELFMEM-------------------- 327
           A  +F  ++ ++ L  + +++ G    G  D A  LF EM                    
Sbjct: 489 AHKIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLFTEMSTTDLTTWSLMVRIYAESCC 548

Query: 328 --------RRI---GMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
                   R I   GM+P+ +T + +L  C+    +    +C   +I     +  +   G
Sbjct: 549 PNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIR--GGLGDIRLKG 606

Query: 377 CLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD-- 434
            L+D+  + G L+ A ++ +S   R + V++ ++++    HG  +       ++ E++  
Sbjct: 607 TLLDVYAKCGSLKHAYSVFQS-DARRDLVMFTAMVAGYAVHGRGKEALMIYSHMTESNIK 665

Query: 435 PDATGCYTLLS 445
           PD     T+L+
Sbjct: 666 PDHVFITTMLT 676



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 167/360 (46%), Gaps = 16/360 (4%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD 106
           V+K C+ +  +  G+ +HG V K+G      V  S++NMYAK   M   +K+F +M   D
Sbjct: 27  VVKACASVSDLTSGRALHGCVFKLGHIACSEVSKSVLNMYAKCRRMDDCQKMFRQMDSLD 86

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAREVF 161
            V WN ++ G + +   E  M+ F  M     P   + T+  +L    + G     + + 
Sbjct: 87  PVVWNIVLTGLSVSCGRET-MRFFKAMHFADEPKPSSVTFAIVLPLCVRLGDSYNGKSMH 145

Query: 162 DQMPK----KSSVSWNAMINGYMKSGKI-NLARQLFGQMPGRNLISWNSMISGYQLNGRF 216
             + K    K ++  NA+++ Y K G I   A   F  +  ++++SWN++I+G+  N   
Sbjct: 146 SYIIKAGLEKDTLVGNALVSMYAKFGFIFPDAYTAFDGIADKDVVSWNAIIAGFSENNMM 205

Query: 217 LEAMELFEVLLKEGLMPSHVTILSALSAVSGL---AVLGNGRWIHSFMVKHCFDLDGV-L 272
            +A   F ++LKE   P++ TI + L   + +       +GR IHS++V+  +    V +
Sbjct: 206 ADAFRSFCLMLKEPTEPNYATIANVLPVCASMDKNIACRSGRQIHSYVVQRSWLQTHVFV 265

Query: 273 GTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG- 331
             SL+  Y + G IE A ++F  + +K L  W  +I G   +    +A +LF  +   G 
Sbjct: 266 CNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNCEWFKAFQLFHNLVHKGD 325

Query: 332 MKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQA 391
           + P ++T I +L  C+    +  G +    ++    ++        L+    R G    A
Sbjct: 326 VSPDSVTIISILPVCAQLTDLASGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAA 385


>AT3G20730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:7247095-7248878 FORWARD
           LENGTH=564
          Length = 564

 Score =  284 bits (726), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 275/493 (55%), Gaps = 17/493 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + K  +VSW  +IS +       DALLLF++M   D+  + FT   V+K C  L  ++EG
Sbjct: 73  ISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEG 132

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            QIHG V K     +  V+S+L+++YA+ G+M  AR  FD M +RD+VSWN++IDGY  N
Sbjct: 133 MQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTAN 192

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDG--LAKCGKVEAAREVFDQMPK----KSSV 170
              + +  LF  M +     D FT+ +LL    + KC  +E   E+     K    +SS 
Sbjct: 193 ACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKC--LEIVSELHGLAIKLGFGRSSA 250

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGY-QLNGRFLEAMELFEVLLKE 229
              +++N Y+K G +  A +L      R+L+S  ++I+G+ Q N    +A ++F+ +++ 
Sbjct: 251 LIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRM 310

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC-FDLDGVLGTSLIEMYSKCGSIES 288
                 V + S L   + +A +  GR IH F +K      D  LG SLI+MY+K G IE 
Sbjct: 311 KTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIED 370

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
           A+  F+ +  K +  WT++I G G HG  ++A++L+  M    +KP+ +TF+ +L+ACSH
Sbjct: 371 AVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSH 430

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP--MRPNKVI 406
            G  + G K +D MIN++ I    EH  C++D+L R+G+L++A  +I S    +  +   
Sbjct: 431 TGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSST 490

Query: 407 WMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
           W + L + R HGN+++ + AA  L+  +P     Y  L+++YAA G WD   + R++MKE
Sbjct: 491 WGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLMKE 550

Query: 467 RGVLKDA-GCSIV 478
            G    A G S+V
Sbjct: 551 SGSCNKAPGYSLV 563


>AT1G77010.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28942710-28944797 FORWARD
           LENGTH=695
          Length = 695

 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/545 (31%), Positives = 279/545 (51%), Gaps = 72/545 (13%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+ N ++  Y+ N  + +AL LF+++   +   D  TL  V+K C+ L A++ G
Sbjct: 150 MPEKDVVTLNSLLHGYILNGYAEEALRLFKEL---NFSADAITLTTVLKACAELEALKCG 206

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLA------------------------- 95
           KQIH  +L  G   D  + SSLVN+YAK G++ +A                         
Sbjct: 207 KQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANC 266

Query: 96  ------RKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR------------- 136
                 R +FD+  +R V+ WNS+I GY  N     A+ LF+EM +              
Sbjct: 267 GRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSRTLAAVIN 326

Query: 137 -------------------------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS 171
                                    D    + LLD  +KCG    A ++F ++    ++ 
Sbjct: 327 ACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTIL 386

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            N+MI  Y   G+I+ A+++F ++  ++LISWNSM +G+  NG  +E +E F  + K  L
Sbjct: 387 LNSMIKVYFSCGRIDDAKRVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDL 446

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
               V++ S +SA + ++ L  G  + +       D D V+ +SLI++Y KCG +E    
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF  +       W ++I G   +G   +A++LF +M   G++P  ITF+ VL AC++ GL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           V+EG K F+ M  ++  VP  EH+ C+VD+L RAG++++A N++E MP   +  +W S+L
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
                +G   +G+ AA  +IE +P+ +  Y  LS I+A +G W+  + VR++M+E  V K
Sbjct: 627 RGCVANGYKAMGKKAAEKIIELEPENSVAYVQLSAIFATSGDWESSALVRKLMRENNVTK 686

Query: 472 DAGCS 476
           + G S
Sbjct: 687 NPGSS 691



 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/491 (25%), Positives = 216/491 (43%), Gaps = 121/491 (24%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLP--DGFTLPCVIKGCSRLHAVQ 58
           M      SWN +I  Y+++     +L  F      D++P  DG++   V+ G        
Sbjct: 88  MPDRNYFSWNTMIEGYMNSGEKGTSLRFF------DMMPERDGYSWNVVVSG-------- 133

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
                                      +AK GE+ +AR++F+ M ++DVV+ NSL+ GY 
Sbjct: 134 ---------------------------FAKAGELSVARRLFNAMPEKDVVTLNSLLHGYI 166

Query: 119 RNGNVEVAMKLFDEMP-SRDAFTWTALLDG------------------------------ 147
            NG  E A++LF E+  S DA T T +L                                
Sbjct: 167 LNGYAEEALRLFKELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNS 226

Query: 148 -----LAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
                 AKCG +  A  + +Q+ +    S +A+I+GY   G++N +R LF +   R +I 
Sbjct: 227 SLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVIL 286

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           WNSMISGY  N   +EA+ LF  +  E    S  T+ + ++A  GL  L  G+ +H    
Sbjct: 287 WNSMISGYIANNMKMEALVLFNEMRNETREDSR-TLAAVINACIGLGFLETGKQMHCHAC 345

Query: 263 KHCFDLDGVLGTSLIEMYSKCGS-------------------------------IESALA 291
           K     D V+ ++L++MYSKCGS                               I+ A  
Sbjct: 346 KFGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVESYDTILLNSMIKVYFSCGRIDDAKR 405

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF+ I NK L  W ++  G   +G   + LE F +M ++ +    ++   V++AC+    
Sbjct: 406 VFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISS 465

Query: 352 VDEGNKCFD----MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           ++ G + F     + ++  ++V +      L+D+ C+ G ++  + + ++M ++ ++V W
Sbjct: 466 LELGEQVFARATIVGLDSDQVVSS-----SLIDLYCKCGFVEHGRRVFDTM-VKSDEVPW 519

Query: 408 MSLLSSSRNHG 418
            S++S    +G
Sbjct: 520 NSMISGYATNG 530



 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 165/343 (48%), Gaps = 67/343 (19%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR 105
           +++ CS  +     +Q +G +LK GF      V + L+ MY++ G+MG+AR +FD+M DR
Sbjct: 32  LLQSCSSRNRETLWRQTNGLLLKKGFLSSIVIVANHLLQMYSRSGKMGIARNLFDEMPDR 91

Query: 106 DVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP 165
           +  SWN++I+GY  +G    +++ FD MP RD ++W  ++ G AK G++  AR +F+ MP
Sbjct: 92  NYFSWNTMIEGYMNSGEKGTSLRFFDMMPERDGYSWNVVVSGFAKAGELSVARRLFNAMP 151

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
           +K  V+ N++++GY+                               LNG   EA+ LF+ 
Sbjct: 152 EKDVVTLNSLLHGYI-------------------------------LNGYAEEALRLFKE 180

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           L         +T+ + L A + L  L  G+ IH+ ++    + D  + +SL+ +Y+KCG 
Sbjct: 181 L---NFSADAITLTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGD 237

Query: 286 IE-----------------SAL--------------AVFKAIANKKLGHWTAIIVGLGMH 314
           +                  SAL               +F   +N+ +  W ++I G   +
Sbjct: 238 LRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIAN 297

Query: 315 GLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            +  +AL LF EMR    +  + T   V+NAC   G ++ G +
Sbjct: 298 NMKMEALVLFNEMRN-ETREDSRTLAAVINACIGLGFLETGKQ 339


>AT3G13880.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4572180-4574426 FORWARD
           LENGTH=748
          Length = 748

 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 175/517 (33%), Positives = 271/517 (52%), Gaps = 16/517 (3%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCS-RLHA--VQEGKQI 63
           VSWN +IS YV    + + L L  +M    L    + L  V+K C   L+   +++G  I
Sbjct: 215 VSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAI 274

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H Y  K+G  FD  V+++L++MYAK G +  A K+F  M  ++VV++N++I G+ +   +
Sbjct: 275 HCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEI 334

Query: 124 -----EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--- 171
                  A KLF +M  R       T++ +L   +    +E  R++   + K +  S   
Sbjct: 335 TDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEF 394

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             +A+I  Y   G      Q F     +++ SW SMI  +  N +   A +LF  L    
Sbjct: 395 IGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSH 454

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P   T+   +SA +  A L +G  I  + +K   D    + TS I MY+K G++  A 
Sbjct: 455 IRPEEYTVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLAN 514

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            VF  + N  +  ++A+I  L  HG A++AL +F  M+  G+KP+   F+GVL AC H G
Sbjct: 515 QVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGG 574

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LV +G K F  M N+Y+I P  +H+ CLVD+L R G L  A+N+I S   + + V W +L
Sbjct: 575 LVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRAL 634

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           LSS R + +  IG+  A  L+E +P+A+G Y LL NIY  +G       VRE+M++RGV 
Sbjct: 635 LSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVK 694

Query: 471 KDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREM 507
           K+   S +    + + F V D SHP ++ IY  L  M
Sbjct: 695 KEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLETM 731



 Score =  164 bits (415), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 28/440 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++S+N +IS Y        A+ LF +    +L  D FT    +  C     +  G
Sbjct: 108 MPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG 167

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +HG V+  G     F+ + L++MY+K G++  A  +FD+  +RD VSWNSLI GY R 
Sbjct: 168 ELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRV 227

Query: 121 GNVEVAMKLFDEMPSRDAFTWT--ALLDGLAKC------GKVEAAREVFDQMPKKSS--- 169
           G  E  + L  +M  RD    T  AL   L  C      G +E    +     K      
Sbjct: 228 GAAEEPLNLLAKM-HRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEFD 286

Query: 170 -VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFL-----EAMELF 223
            V   A+++ Y K+G +  A +LF  MP +N++++N+MISG+            EA +LF
Sbjct: 287 IVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKLF 346

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
             + + GL PS  T    L A S    L  GR IH+ + K+ F  D  +G++LIE+Y+  
Sbjct: 347 MDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALM 406

Query: 284 GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
           GS E  +  F + + + +  WT++I     +   + A +LF ++    ++P   T   ++
Sbjct: 407 GSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMM 466

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL----VDILCRAGHLQQAKNIIESMP 399
           +AC+    +  G +     I  Y I   ++ +  +    + +  ++G++  A  +   + 
Sbjct: 467 SACADFAALSSGEQ-----IQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEV- 520

Query: 400 MRPNKVIWMSLLSSSRNHGN 419
             P+   + +++SS   HG+
Sbjct: 521 QNPDVATYSAMISSLAQHGS 540



 Score =  133 bits (334), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 166/346 (47%), Gaps = 80/346 (23%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GK  HG+++K       ++ ++L+NMY K  E+G AR++FD+M +R+++S+NSLI GY +
Sbjct: 66  GKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLFDRMPERNIISFNSLISGYTQ 125

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTA-------------------------------- 143
            G  E AM+LF E        D FT+                                  
Sbjct: 126 MGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQVFL 185

Query: 144 ---LLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQM--PGR 198
              L+D  +KCGK++ A  +FD+  ++  VSWN++I+GY++ G       L  +M   G 
Sbjct: 186 INVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGL 245

Query: 199 NLISW--NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRW 256
           NL ++   S++    +N             L EG +                     G  
Sbjct: 246 NLTTYALGSVLKACCIN-------------LNEGFIE-------------------KGMA 273

Query: 257 IHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVG-LGMHG 315
           IH +  K   + D V+ T+L++MY+K GS++ A+ +F  + +K +  + A+I G L M  
Sbjct: 274 IHCYTAKLGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDE 333

Query: 316 LAD----QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           + D    +A +LFM+M+R G++P   TF  VL ACS    ++ G +
Sbjct: 334 ITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQ 379



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 133/286 (46%), Gaps = 15/286 (5%)

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMING----YMKSGKINLARQLF 192
           D+  +  L    AK G V   +     M K S      ++N     Y K  ++  ARQLF
Sbjct: 46  DSEGYKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLF 105

Query: 193 GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG 252
            +MP RN+IS+NS+ISGY   G + +AMELF    +  L     T   AL        L 
Sbjct: 106 DRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLD 165

Query: 253 NGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLG 312
            G  +H  +V +       L   LI+MYSKCG ++ A+++F     +    W ++I G  
Sbjct: 166 LGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYV 225

Query: 313 MHGLADQALELFMEMRRIGMKPHAITFIGVLNACS---HKGLVDEGNK--CFDMMIN-EY 366
             G A++ L L  +M R G+         VL AC    ++G +++G    C+   +  E+
Sbjct: 226 RVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEF 285

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            IV        L+D+  + G L++A  +   MP + N V + +++S
Sbjct: 286 DIVVRT----ALLDMYAKNGSLKEAIKLFSLMPSK-NVVTYNAMIS 326



 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 82/143 (57%), Gaps = 6/143 (4%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           K  + SW  +I C+V N +   A  LFRQ+    + P+ +T+  ++  C+   A+  G+Q
Sbjct: 421 KQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFAALSSGEQ 480

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           I GY +K G      V++S ++MYAK G M LA +VF ++ + DV +++++I   A++G+
Sbjct: 481 IQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMISSLAQHGS 540

Query: 123 VEVAMKLFDEM------PSRDAF 139
              A+ +F+ M      P++ AF
Sbjct: 541 ANEALNIFESMKTHGIKPNQQAF 563


>AT3G16610.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr3:5656371-5658335 REVERSE LENGTH=654
          Length = 654

 Score =  283 bits (724), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/586 (30%), Positives = 287/586 (48%), Gaps = 114/586 (19%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           ++W+L+I  Y  N  +  AL L+ +ML+  + P  +T P V+K C+ L A+ +GK IH +
Sbjct: 69  IAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSH 128

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           V    F  D +V ++LV+ YAK GE+ +A KVFD+M  RD+V+WN++I G++ +  +   
Sbjct: 129 VNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDV 188

Query: 127 MKLFDEMP----------------------------------------SRDAFTWTALLD 146
           + LF +M                                         S D    T +LD
Sbjct: 189 IGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILD 248

Query: 147 GLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQM----------- 195
             AK   +  AR VFD   KK+ V+W+AMI GY+++  I  A ++F QM           
Sbjct: 249 VYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTP 308

Query: 196 -----------------PGR-------------NLISWNSMISGYQLNGRFLEAMELF-E 224
                             GR             +L   N++IS Y   G   +A   F E
Sbjct: 309 VAIGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSE 368

Query: 225 VLLKE------------------------------GLMPSHVTILSALSAVSGLAVLGNG 254
           + LK+                              G+ P   T+L  L+A S LA LG+G
Sbjct: 369 IGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHG 428

Query: 255 RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMH 314
              H + V H + ++  +  +L++MY+KCG ++ A  VF  +  + +  W  ++ G G+H
Sbjct: 429 SSCHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIH 488

Query: 315 GLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN-EYKIVPTVE 373
           GL  +AL LF  M+  G+ P  +T + +L+ACSH GLVDEG + F+ M   ++ ++P ++
Sbjct: 489 GLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRID 548

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
           HY C+ D+L RAG+L +A + +  MP  P+  +  +LLS+   + N E+G   +  + ++
Sbjct: 549 HYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSACWTYKNAELGNEVSKKM-QS 607

Query: 434 DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVE 479
             + T    LLSN Y+AA +W+  + +R + K+RG+LK  G S V+
Sbjct: 608 LGETTESLVLLSNTYSAAERWEDAARIRMIQKKRGLLKTPGYSWVD 653



 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 123/240 (51%), Gaps = 13/240 (5%)

Query: 179 YMKSGKINLARQLFGQMPGR--NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           Y    ++ LAR +F ++P    N I+W+ MI  Y  N    +A++L+  +L  G+ P+  
Sbjct: 45  YASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKY 104

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T    L A +GL  + +G+ IHS +    F  D  + T+L++ Y+KCG +E A+ VF  +
Sbjct: 105 TYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEM 164

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITFIGVLNACSHKGLVDEG 355
             + +  W A+I G  +H      + LF++MRRI G+ P+  T +G+  A    G + EG
Sbjct: 165 PKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG 224

Query: 356 NK----CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
                 C  M  +   +V T      ++D+  ++  +  A+ + + +  + N+V W +++
Sbjct: 225 KAVHGYCTRMGFSNDLVVKT-----GILDVYAKSKCIIYARRVFD-LDFKKNEVTWSAMI 278



 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 120/516 (23%), Positives = 203/516 (39%), Gaps = 136/516 (26%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDK-FVQSSLVNMYAKWGEMGLARKVFDKMVDR 105
           +++ C R   +  G+ IH ++LK         V  +L  +YA   E+ LAR VFD++   
Sbjct: 5   LLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHP 64

Query: 106 DV--VSWNSLIDGYARNGNVEVAMKLFDEM------PSR--------------------- 136
            +  ++W+ +I  YA N   E A+ L+ +M      P++                     
Sbjct: 65  RINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKL 124

Query: 137 ------------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGK 184
                       D +  TAL+D  AKCG++E A +VFD+MPK+  V+WNA          
Sbjct: 125 IHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNA---------- 174

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK-EGLMPSHVTILSALS 243
                                MISG+ L+    + + LF  + + +GL P+  TI+    
Sbjct: 175 ---------------------MISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213

Query: 244 AVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH 303
           A+     L  G+ +H +  +  F  D V+ T ++++Y+K   I  A  VF     K    
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273

Query: 304 WTAIIVGLGMHGLADQALELFMEM---RRIGM-KPHAITFIGVLNACSHKGLVDEGNKC- 358
           W+A+I G   + +  +A E+F +M     + M  P AI  I  L  C+  G +  G +C 
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLI--LMGCARFGDL-SGGRCV 330

Query: 359 ----------FDMMINEYKIVPTVEHYGCLVDIL------------------------CR 384
                      D+ +    I+     YG L D                          CR
Sbjct: 331 HCYAVKAGFILDLTVQN-TIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCR 389

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSS----------SRNHGNLEIGEYAAHNLIEAD 434
                +  + + +  +RP+    + +L++          S  HG   +  YA +  I   
Sbjct: 390 PEESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSI--- 446

Query: 435 PDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
                C  L+ ++Y   GK D    V + M +R ++
Sbjct: 447 -----CNALM-DMYTKCGKLDVAKRVFDTMHKRDIV 476


>AT1G74600.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:28025153-28027840 REVERSE LENGTH=895
          Length = 895

 Score =  283 bits (724), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 260/477 (54%), Gaps = 11/477 (2%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLK 69
           N++I+ +  + +   A+ LF +ML   L  D F++  ++   S L  +  GKQ+HGY LK
Sbjct: 422 NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLL---SVLDCLNLGKQVHGYTLK 478

Query: 70  IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKL 129
            G   D  V SSL  +Y+K G +  + K+F  +  +D   W S+I G+   G +  A+ L
Sbjct: 479 SGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGL 538

Query: 130 FDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMK 181
           F EM     S D  T  A+L   +    +   +E+     +    K     +A++N Y K
Sbjct: 539 FSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSK 598

Query: 182 SGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSA 241
            G + LARQ++ ++P  + +S +S+ISGY  +G   +   LF  ++  G       I S 
Sbjct: 599 CGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSI 658

Query: 242 LSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL 301
           L A +       G  +H+++ K     +  +G+SL+ MYSK GSI+     F  I    L
Sbjct: 659 LKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDL 718

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
             WTA+I     HG A++AL+++  M+  G KP  +TF+GVL+ACSH GLV+E     + 
Sbjct: 719 IAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNS 778

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           M+ +Y I P   HY C+VD L R+G L++A++ I +M ++P+ ++W +LL++ + HG +E
Sbjct: 779 MVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVE 838

Query: 422 IGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
           +G+ AA   IE +P   G Y  LSNI A  G+WD+V   R++MK  GV K+ G S V
Sbjct: 839 LGKVAAKKAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/482 (26%), Positives = 223/482 (46%), Gaps = 26/482 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++VSW +++S Y  ++ +  AL +F++M H  +  +  T+  VI  C R   V E  Q+
Sbjct: 314 PSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQV 373

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD---RDVVSWNSLIDGYARN 120
           H +V K GF  D  V ++L++MY+K G++ L+ +VF+ + D   +++V  N +I  ++++
Sbjct: 374 HAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQS 431

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV----SW 172
                A++LF  M       D F+  +LL  L  C  +   ++V     K   V      
Sbjct: 432 KKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVL-DC--LNLGKQVHGYTLKSGLVLDLTVG 488

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +++   Y K G +  + +LF  +P ++   W SMISG+   G   EA+ LF  +L +G  
Sbjct: 489 SSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTS 548

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P   T+ + L+  S    L  G+ IH + ++   D    LG++L+ MYSKCGS++ A  V
Sbjct: 549 PDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQV 608

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           +  +        +++I G   HGL      LF +M   G    +     +L A +   L 
Sbjct: 609 YDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAA---LS 665

Query: 353 DEGNKCFDMMINEYKIVPTVEHY--GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           DE +    +     KI    E      L+ +  + G +         +   P+ + W +L
Sbjct: 666 DESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQIN-GPDLIAWTAL 724

Query: 411 LSSSRNHGNLEIGEYAAHNLIEA---DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
           ++S   HG         +NL++     PD      +LS         +   H+  M+K+ 
Sbjct: 725 IASYAQHGKANEA-LQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDY 783

Query: 468 GV 469
           G+
Sbjct: 784 GI 785



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 207/430 (48%), Gaps = 21/430 (4%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +VS N++IS Y  +    ++L  F +M       +  +   VI  CS L A    + 
Sbjct: 112 QPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSEL 171

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +  + +K+G+ F + V+S+L+++++K      A KVF   +  +V  WN++I G  RN N
Sbjct: 172 VCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQN 231

Query: 123 VEVAMKLFDEM----PSRDAFTWTALLDGLA-----KCGKVEAAREVFDQMPKKSSVSWN 173
                 LF EM       D++T++++L   A     + GKV  AR +  +   +      
Sbjct: 232 YGAVFDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVI--KCGAEDVFVCT 289

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           A+++ Y K G +  A ++F ++P  +++SW  M+SGY  +     A+E+F+ +   G+  
Sbjct: 290 AIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEI 349

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
           ++ T+ S +SA    +++     +H+++ K  F LD  +  +LI MYSK G I+ +  VF
Sbjct: 350 NNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVF 409

Query: 294 KAIAN-KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA--CSHKG 350
           + + + ++      +I          +A+ LF  M + G++    +   +L+   C + G
Sbjct: 410 EDLDDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLG 469

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
               G      ++ +  +  +      L  +  + G L+++  + + +P + N   W S+
Sbjct: 470 KQVHGYTLKSGLVLDLTVGSS------LFTLYSKCGSLEESYKLFQGIPFKDN-ACWASM 522

Query: 411 LSSSRNHGNL 420
           +S    +G L
Sbjct: 523 ISGFNEYGYL 532



 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 157/318 (49%), Gaps = 16/318 (5%)

Query: 52  SRLHAVQEGKQIHGYVLK-IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSW 110
           SRL  ++  K +  ++L+     FD F+  SL++ Y+  G M  A K+FD +   DVVS 
Sbjct: 59  SRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSC 118

Query: 111 NSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDG--LAKCGKVEAAREVFDQMPKKS 168
           N +I GY ++   E +++ F +M     F    +  G  ++ C  ++A   +F ++    
Sbjct: 119 NIMISGYKQHRLFEESLRFFSKMHFL-GFEANEISYGSVISACSALQAP--LFSELVCCH 175

Query: 169 SVSW---------NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA 219
           ++           +A+I+ + K+ +   A ++F      N+  WN++I+G   N  +   
Sbjct: 176 TIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAV 235

Query: 220 MELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEM 279
            +LF  +      P   T  S L+A + L  L  G+ + + ++K C   D  + T+++++
Sbjct: 236 FDLFHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIK-CGAEDVFVCTAIVDL 294

Query: 280 YSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
           Y+KCG +  A+ VF  I N  +  WT ++ G      A  ALE+F EMR  G++ +  T 
Sbjct: 295 YAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTV 354

Query: 340 IGVLNACSHKGLVDEGNK 357
             V++AC    +V E ++
Sbjct: 355 TSVISACGRPSMVCEASQ 372



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 120/251 (47%), Gaps = 16/251 (6%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VS + +IS Y  +    D  LLFR M+      D F +  ++K  +       G Q+H Y
Sbjct: 618 VSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAY 677

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           + KIG   +  V SSL+ MY+K+G +    K F ++   D+++W +LI  YA++G    A
Sbjct: 678 ITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEA 737

Query: 127 MKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMIN 177
           +++++ M  +    D  T+  +L   +  G VE +    + M K   +      +  M++
Sbjct: 738 LQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVD 797

Query: 178 GYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKEG--LMPS 234
              +SG++  A      M  + + + W ++++  +++G     +EL +V  K+   L PS
Sbjct: 798 ALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGE----VELGKVAAKKAIELEPS 853

Query: 235 HVTILSALSAV 245
                 +LS +
Sbjct: 854 DAGAYISLSNI 864


>AT4G08210.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:5183813-5185873 REVERSE
           LENGTH=686
          Length = 686

 Score =  282 bits (721), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 166/487 (34%), Positives = 262/487 (53%), Gaps = 13/487 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +P +VSWN +IS +V +  S  AL    +M    L+ DGF LPC +K CS    +  G
Sbjct: 199 MPQPNVVSWNCLISGFV-DKGSPRALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMG 257

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDK---MVDRDVVSWNSLIDGY 117
           KQ+H  V+K G     F  S+L++MY+  G +  A  VF +    V+  V  WNS++ G+
Sbjct: 258 KQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGF 317

Query: 118 ARNGNVEVAMKLFDEMPSRD-AFTWTALLDGLAKCGK-------VEAAREVFDQMPKKSS 169
             N   E A+ L  ++   D  F    L   L  C         ++    V     +   
Sbjct: 318 LINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQVHSLVVVSGYELDY 377

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           +  + +++ +   G I  A +LF ++P +++I+++ +I G   +G    A  LF  L+K 
Sbjct: 378 IVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKL 437

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           GL      + + L   S LA LG G+ IH   +K  ++ + V  T+L++MY KCG I++ 
Sbjct: 438 GLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNG 497

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
           + +F  +  + +  WT IIVG G +G  ++A   F +M  IG++P+ +TF+G+L+AC H 
Sbjct: 498 VVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHS 557

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
           GL++E     + M +EY + P +EHY C+VD+L +AG  Q+A  +I  MP+ P+K IW S
Sbjct: 558 GLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTS 617

Query: 410 LLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           LL++   H N  +    A  L++  PD    YT LSN YA  G WD++S VRE  K+ G 
Sbjct: 618 LLTACGTHKNAGLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREAAKKLGA 677

Query: 470 LKDAGCS 476
            K++G S
Sbjct: 678 -KESGMS 683



 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/437 (24%), Positives = 203/437 (46%), Gaps = 54/437 (12%)

Query: 48  IKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDV 107
           ++ C ++ A + G+ I  +V+K G   + F+ +++++MY  +  +  A KVFD+M +R++
Sbjct: 12  LRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNI 71

Query: 108 VSWNSLIDGYARNGNVEVAMKLFDEM-----PSRDAFTWTALL----------------- 145
           V+W +++ GY  +G    A++L+  M      + + F ++A+L                 
Sbjct: 72  VTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYE 131

Query: 146 ------------------DGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINL 187
                             D   K G++  A   F ++ + SS SWN +I+GY K+G ++ 
Sbjct: 132 RIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGLMDE 191

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           A  LF +MP  N++SWN +ISG+   G    A+E    + +EGL+     +   L A S 
Sbjct: 192 AVTLFHRMPQPNVVSWNCLISGFVDKGS-PRALEFLVRMQREGLVLDGFALPCGLKACSF 250

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF---KAIANKKLGHW 304
             +L  G+ +H  +VK   +      ++LI+MYS CGS+  A  VF   K   N  +  W
Sbjct: 251 GGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVW 310

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN 364
            +++ G  ++   + AL L +++ +  +   + T  G L  C     ++  N    + ++
Sbjct: 311 NSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKIC-----INYVNLRLGLQVH 365

Query: 365 EYKIVPTVE-HY---GCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
              +V   E  Y     LVD+    G++Q A  +   +P + + + +  L+      G  
Sbjct: 366 SLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNK-DIIAFSGLIRGCVKSGFN 424

Query: 421 EIGEYAAHNLIEADPDA 437
            +  Y    LI+   DA
Sbjct: 425 SLAFYLFRELIKLGLDA 441



 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/514 (23%), Positives = 219/514 (42%), Gaps = 48/514 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQML-HHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  +V+W  ++S Y  + + N A+ L+R+ML   +   + F    V+K C  +  +Q 
Sbjct: 66  MSERNIVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQL 125

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G  ++  + K     D  + +S+V+MY K G +  A   F +++     SWN+LI GY +
Sbjct: 126 GILVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCK 185

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGK-------VEAARE--VFD--QMP--- 165
            G ++ A+ LF  MP  +  +W  L+ G    G        V   RE  V D   +P   
Sbjct: 186 AGLMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPRALEFLVRMQREGLVLDGFALPCGL 245

Query: 166 ------------------------KKSSVSWNAMINGYMKSGKINLARQLFGQMP---GR 198
                                   + S  + +A+I+ Y   G +  A  +F Q       
Sbjct: 246 KACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNS 305

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           ++  WNSM+SG+ +N     A+ L   + +  L     T+  AL        L  G  +H
Sbjct: 306 SVAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQVH 365

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
           S +V   ++LD ++G+ L+++++  G+I+ A  +F  + NK +  ++ +I G    G   
Sbjct: 366 SLVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNS 425

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE-YKIVPTVEHYGC 377
            A  LF E+ ++G+         +L  CS    +  G +   + I + Y+  P       
Sbjct: 426 LAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPVTAT--A 483

Query: 378 LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE--ADP 435
           LVD+  + G +     + + M  R + V W  ++     +G +E      H +I    +P
Sbjct: 484 LVDMYVKCGEIDNGVVLFDGMLER-DVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEP 542

Query: 436 DATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           +      LLS    +    +  S +  M  E G+
Sbjct: 543 NKVTFLGLLSACRHSGLLEEARSTLETMKSEYGL 576



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 21/220 (9%)

Query: 147 GLAKCGKVEAARE-------VFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRN 199
           GL  CGKV+A +        V  Q   ++    N +I+ Y+    ++ A ++F +M  RN
Sbjct: 11  GLRHCGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERN 70

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN---GRW 256
           +++W +M+SGY  +G+  +A+EL+  +L      ++  + SA+    GL  +G+   G  
Sbjct: 71  IVTWTTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGL--VGDIQLGIL 128

Query: 257 IHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
           ++  + K     D VL  S+++MY K G +  A + FK I       W  +I G    GL
Sbjct: 129 VYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGL 188

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
            D+A+ LF  M     +P+ +++      C   G VD+G+
Sbjct: 189 MDEAVTLFHRMP----QPNVVSW-----NCLISGFVDKGS 219


>AT3G53360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:19784502-19786808 FORWARD
           LENGTH=768
          Length = 768

 Score =  281 bits (718), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/512 (31%), Positives = 273/512 (53%), Gaps = 10/512 (1%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGKQIH 64
           L+SW+ II+ +       +AL   ++ML   +  P+ +     +K CS L     G QIH
Sbjct: 234 LISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIH 293

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
           G  +K     +     SL +MYA+ G +  AR+VFD++   D  SWN +I G A NG  +
Sbjct: 294 GLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYAD 353

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMI 176
            A+ +F +M S     DA +  +LL    K   +    ++   + K   ++     N+++
Sbjct: 354 EAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLL 413

Query: 177 NGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
             Y     +     LF       + +SWN++++    + + +E + LF+++L     P H
Sbjct: 414 TMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDH 473

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
           +T+ + L     ++ L  G  +H + +K     +  +   LI+MY+KCGS+  A  +F +
Sbjct: 474 ITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDS 533

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           + N+ +  W+ +IVG    G  ++AL LF EM+  G++P+ +TF+GVL ACSH GLV+EG
Sbjct: 534 MDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEG 593

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
            K +  M  E+ I PT EH  C+VD+L RAG L +A+  I+ M + P+ V+W +LLS+ +
Sbjct: 594 LKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACK 653

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
             GN+ + + AA N+++ DP  +  + LL +++A++G W+  + +R  MK+  V K  G 
Sbjct: 654 TQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQ 713

Query: 476 SIVEHRGKLNRFIVGDKSHPQTKAIYAKLREM 507
           S +E   K++ F   D  HP+   IY  L  +
Sbjct: 714 SWIEIEDKIHIFFAEDIFHPERDDIYTVLHNI 745



 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 199/393 (50%), Gaps = 28/393 (7%)

Query: 43  TLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM 102
           T   +I  CS   ++ +G++IH ++L     +D  + + +++MY K G +  AR+VFD M
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAR 158
            +R++VS+ S+I GY++NG    A++L+ +M       D F + +++   A    V   +
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 159 EVFDQMPKKSS----VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
           ++  Q+ K  S    ++ NA+I  Y++  +++ A ++F  +P ++LISW+S+I+G+   G
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248

Query: 215 RFLEAMELFEVLLKEGLM-PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
              EA+   + +L  G+  P+     S+L A S L     G  IH   +K     + + G
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            SL +MY++CG + SA  VF  I       W  II GL  +G AD+A+ +F +MR  G  
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDI-LCRA------- 385
           P AI+   +L A +    + +G     M I+ Y I      +G L D+ +C +       
Sbjct: 369 PDAISLRSLLCAQTKPMALSQG-----MQIHSYII-----KWGFLADLTVCNSLLTMYTF 418

Query: 386 -GHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
              L    N+ E      + V W ++L++   H
Sbjct: 419 CSDLYCCFNLFEDFRNNADSVSWNTILTACLQH 451



 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 192/454 (42%), Gaps = 78/454 (17%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  LVS+  +I+ Y  N +  +A+ L+ +ML  DL+PD F    +IK C+    V  G
Sbjct: 128 MPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLG 187

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQ+H  V+K+        Q++L+ MY ++ +M  A +VF  +  +D++SW+S+I G+++ 
Sbjct: 188 KQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQL 247

Query: 121 GNVEVAMKLFDEMPS----------------------------------------RDAFT 140
           G    A+    EM S                                         +A  
Sbjct: 248 GFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIA 307

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
             +L D  A+CG + +AR VFDQ+ +  + SWN +I G   +G  + A  +F QM     
Sbjct: 308 GCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRS--- 364

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
                                        G +P  +++ S L A +    L  G  IHS+
Sbjct: 365 ----------------------------SGFIPDAISLRSLLCAQTKPMALSQGMQIHSY 396

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG-HWTAIIVGLGMHGLADQ 319
           ++K  F  D  +  SL+ MY+ C  +     +F+   N      W  I+     H    +
Sbjct: 397 IIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVE 456

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK--CFDMMINEYKIVPTVEHYGC 377
            L LF  M     +P  IT   +L  C     +  G++  C+ +   +  + P       
Sbjct: 457 MLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSL---KTGLAPEQFIKNG 513

Query: 378 LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           L+D+  + G L QA+ I +SM  R + V W +L+
Sbjct: 514 LIDMYAKCGSLGQARRIFDSMDNR-DVVSWSTLI 546



 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 3/198 (1%)

Query: 216 FLEAMELFEVLLKEGLMPSHV-TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
           + EA+E F+   K       + T +S + A S    L  GR IH  ++      D +L  
Sbjct: 47  YREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNN 106

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
            ++ MY KCGS+  A  VF  +  + L  +T++I G   +G   +A+ L+++M +  + P
Sbjct: 107 HILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVP 166

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
               F  ++ AC+    V  G +    +I        +     L+ +  R   +  A  +
Sbjct: 167 DQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQ-NALIAMYVRFNQMSDASRV 225

Query: 395 IESMPMRPNKVIWMSLLS 412
              +PM+ + + W S+++
Sbjct: 226 FYGIPMK-DLISWSSIIA 242



 Score = 66.2 bits (160), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 2/145 (1%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +VSW+ +I  Y  +    +AL+LF++M    + P+  T   V+  CS +  V+EG
Sbjct: 534 MDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEG 593

Query: 61  KQIHGYV-LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGYA 118
            +++  +  + G    K   S +V++ A+ G +  A +  D+M ++ DVV W +L+    
Sbjct: 594 LKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACK 653

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTA 143
             GNV +A K  + +   D F  TA
Sbjct: 654 TQGNVHLAQKAAENILKIDPFNSTA 678


>AT3G21470.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:7563503-7565074 FORWARD
           LENGTH=523
          Length = 523

 Score =  276 bits (705), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 165/508 (32%), Positives = 277/508 (54%), Gaps = 47/508 (9%)

Query: 13  ISCYVHNHRSN----DALLLFRQMLHHDLLPDGFTLPCVIKGCS-RLHAVQEGKQIHGYV 67
           +S  + NH S      AL+L+  +    +   G+ +P +++ C+  +  V  GK +H   
Sbjct: 14  VSNLIKNHISRGSPIQALVLYGGIRRRGVYFPGW-VPLILRACACVVPRVVLGKLLHSES 72

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           +K G   D  V SSL++MY K G +  ARKVFD+M +R+V +WN++I GY  NG+  +A 
Sbjct: 73  IKFGVCSDVMVGSSLISMYGKCGCVVSARKVFDEMPERNVATWNAMIGGYMSNGDAVLAS 132

Query: 128 KLFDEMP-SRDAFTWTALLDGLAKCGKVEAAREVFDQMP--------------------- 165
            LF+E+   R+  TW  ++ G  K  ++E ARE+F++MP                     
Sbjct: 133 GLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGVYVNNRK 192

Query: 166 ------------KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN 213
                       +K++  W+ M++GY + G ++ AR +F ++  R+L+ WN++I+GY  N
Sbjct: 193 MEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQN 252

Query: 214 GRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
           G   +A++ F  +  EG  P  VT+ S LSA +    L  GR +HS +     +L+  + 
Sbjct: 253 GYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVS 312

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            +LI+MY+KCG +E+A +VF++I+ + +    ++I  L +HG   +ALE+F  M  + +K
Sbjct: 313 NALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLK 372

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKN 393
           P  ITFI VL AC H G + EG K F  M  +  + P V+H+GCL+ +L R+G L++A  
Sbjct: 373 PDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ-DVKPNVKHFGCLIHLLGRSGKLKEAYR 431

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYT-----LLSNIY 448
           +++ M ++PN  +  +LL + + H + E+ E     +IE     T  Y+      +SN+Y
Sbjct: 432 LVKEMHVKPNDTVLGALLGACKVHMDTEMAE-QVMKIIETAGSITNSYSENHLASISNLY 490

Query: 449 AAAGKWDKVSHVREMMKERGVLKDAGCS 476
           A   +W     +R  M++RG+ K  G S
Sbjct: 491 AHTERWQTAEALRVEMEKRGLEKSPGLS 518



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 47/262 (17%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           +W++++  YV+N +  DA   F        +P+                           
Sbjct: 179 AWSVMLGVYVNNRKMEDARKFFED------IPEK-------------------------- 206

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
                  + FV S +++ Y + G++  AR +F ++  RD+V WN+LI GYA+NG  + A+
Sbjct: 207 -------NAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAI 259

Query: 128 KLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGY 179
             F  M       DA T +++L   A+ G+++  REV   +  +    +    NA+I+ Y
Sbjct: 260 DAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIELNQFVSNALIDMY 319

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
            K G +  A  +F  +  R++   NSMIS   ++G+  EA+E+F  +    L P  +T +
Sbjct: 320 AKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTMESLDLKPDEITFI 379

Query: 240 SALSAVSGLAVLGNGRWIHSFM 261
           + L+A      L  G  I S M
Sbjct: 380 AVLTACVHGGFLMEGLKIFSEM 401



 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 8/198 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           LV WN +I+ Y  N  S+DA+  F  M      PD  T+  ++  C++   +  G+++H 
Sbjct: 239 LVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHS 298

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            +   G   ++FV ++L++MYAK G++  A  VF+ +  R V   NS+I   A +G  + 
Sbjct: 299 LINHRGIELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKE 358

Query: 126 AMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMIN 177
           A+++F  M S     D  T+ A+L      G +    ++F +M     K +   +  +I+
Sbjct: 359 ALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIH 418

Query: 178 GYMKSGKINLARQLFGQM 195
              +SGK+  A +L  +M
Sbjct: 419 LLGRSGKLKEAYRLVKEM 436


>AT3G25970.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:9500116-9502221 REVERSE
           LENGTH=701
          Length = 701

 Score =  274 bits (701), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 169/525 (32%), Positives = 287/525 (54%), Gaps = 13/525 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQM-LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           + +P  VSWN +I+ +V       A  L   M +   +  D  T   ++           
Sbjct: 162 ISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNL 221

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV-DRDVVSWNSLIDGYA 118
            KQ+H  VLK+G   +  + +++++ YA  G +  A++VFD +   +D++SWNS+I G++
Sbjct: 222 LKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFS 281

Query: 119 RNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SV 170
           ++   E A +LF +M       D +T+T LL   +        + +   + KK     + 
Sbjct: 282 KHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTS 341

Query: 171 SWNAMINGYMK--SGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
           + NA+I+ Y++  +G +  A  LF  +  ++LISWNS+I+G+   G   +A++ F  L  
Sbjct: 342 ATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRS 401

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
             +        + L + S LA L  G+ IH+   K  F  +  + +SLI MYSKCG IES
Sbjct: 402 SEIKVDDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIES 461

Query: 289 ALAVFKAIANK-KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           A   F+ I++K     W A+I+G   HGL   +L+LF +M    +K   +TF  +L ACS
Sbjct: 462 ARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACS 521

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           H GL+ EG +  ++M   YKI P +EHY   VD+L RAG + +AK +IESMP+ P+ ++ 
Sbjct: 522 HTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVL 581

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            + L   R  G +E+    A++L+E +P+    Y  LS++Y+   KW++ + V++MMKER
Sbjct: 582 KTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKER 641

Query: 468 GVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
           GV K  G S +E R ++  F   D+S+P  + IY  +++++++++
Sbjct: 642 GVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQ 686



 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 210/436 (48%), Gaps = 25/436 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K   VSWN +IS Y    +  DA  LF  M       DG++   ++KG + +     G
Sbjct: 61  MPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLG 120

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+HG V+K G+  + +V SSLV+MYAK   +  A + F ++ + + VSWN+LI G+ + 
Sbjct: 121 EQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQV 180

Query: 121 GNVEVAMKLFDEMPSRDAFTWTA--------LLDGLAKCGKVEAAREVFDQMPKKSSVS- 171
            +++ A  L   M  + A T  A        LLD    C  ++       ++  +  ++ 
Sbjct: 181 RDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITI 240

Query: 172 WNAMINGYMKSGKINLARQLFGQMPG-RNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
            NAMI+ Y   G ++ A+++F  + G ++LISWNSMI+G+  +     A ELF  + +  
Sbjct: 241 CNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHW 300

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK--CGSIES 288
           +     T    LSA SG      G+ +H  ++K   +       +LI MY +   G++E 
Sbjct: 301 VETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMED 360

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
           AL++F+++ +K L  W +II G    GL++ A++ F  +R   +K     F  +L +CS 
Sbjct: 361 ALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSD 420

Query: 349 KGLVDEGNKCFDMMI------NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
              +  G +   +        NE+ I   +  Y        + G ++ A+   + +  + 
Sbjct: 421 LATLQLGQQIHALATKSGFVSNEFVISSLIVMYS-------KCGIIESARKCFQQISSKH 473

Query: 403 NKVIWMSLLSSSRNHG 418
           + V W +++     HG
Sbjct: 474 STVAWNAMILGYAQHG 489



 Score =  122 bits (306), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 208/452 (46%), Gaps = 42/452 (9%)

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H Y +K G   D +V + +++ Y K+G +G A  +FD+M  RD VSWN++I GY   G +
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAM 175
           E A  LF  M       D ++++ LL G+A   + +   +V   + K     +    +++
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSL 142

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           ++ Y K  ++  A + F ++   N +SWN++I+G      F++  ++       GLM   
Sbjct: 143 VDMYAKCERVEDAFEAFKEISEPNSVSWNALIAG------FVQVRDIKTAFWLLGLMEMK 196

Query: 236 VTILSALSAVSGLAVLGNG-------RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
             +       + L  L +        + +H+ ++K     +  +  ++I  Y+ CGS+  
Sbjct: 197 AAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSD 256

Query: 289 ALAVFKAI-ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           A  VF  +  +K L  W ++I G   H L + A ELF++M+R  ++    T+ G+L+ACS
Sbjct: 257 AKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACS 316

Query: 348 HKGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
            +     G     M+I +  + V +  +    + I    G ++ A ++ ES+  + + + 
Sbjct: 317 GEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSK-DLIS 375

Query: 407 WMSLLSSSRNHG---------------NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAA 451
           W S+++     G                +++ +YA   L+ +  D      L   I+A A
Sbjct: 376 WNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSD-LATLQLGQQIHALA 434

Query: 452 GKWDKVSHVREMMKERGVLKDAGCSIVEHRGK 483
            K   VS+  E +    ++  + C I+E   K
Sbjct: 435 TKSGFVSN--EFVISSLIVMYSKCGIIESARK 464


>AT1G28690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10080042-10081604 REVERSE
           LENGTH=520
          Length = 520

 Score =  274 bits (701), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 155/467 (33%), Positives = 252/467 (53%), Gaps = 46/467 (9%)

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLID 115
           A + GK+IH  ++K GF  D  +   L+ ++ K G +  AR+VFD++    + ++N +I 
Sbjct: 49  APKAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMIS 108

Query: 116 GYARNGNVEVAMKLFDEMP----SRDAFTW------------------------------ 141
           GY ++G V+  + L   M       D +T                               
Sbjct: 109 GYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIK 168

Query: 142 ----------TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQL 191
                     TAL+D   K GK+E+AR VF+ M  ++ V   +MI+GYM  G +  A ++
Sbjct: 169 CDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEI 228

Query: 192 FGQMPGRNLISWNSMISGYQLNGRFLE-AMELFEVLLKEGLMPSHVTILSALSAVSGLAV 250
           F     ++++ +N+M+ G+  +G   + +++++  + + G  P+  T  S + A S L  
Sbjct: 229 FNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTS 288

Query: 251 LGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVG 310
              G+ +H+ ++K        +G+SL++MY+KCG I  A  VF  +  K +  WT++I G
Sbjct: 289 HEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDG 348

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
            G +G  ++ALELF  M+   ++P+ +TF+G L+ACSH GLVD+G + F+ M  +Y + P
Sbjct: 349 YGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKP 408

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNL 430
            +EHY C+VD++ RAG L +A     +MP RP+  IW +LLSS   HGN+E+   AA  L
Sbjct: 409 KMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASEL 468

Query: 431 IEADPDA-TGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
            + + D   G Y  LSN+YA+  KWD VS +RE+MK R + K  G S
Sbjct: 469 FKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRS 515



 Score =  135 bits (341), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 188/410 (45%), Gaps = 49/410 (11%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIK-----GCSRLH 55
           + KPTL ++N +IS Y+ +    + LLL ++M +     DG+TL  V+K     G + + 
Sbjct: 95  LPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMIL 154

Query: 56  AVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLID 115
                + +H  ++K     D  + ++LV+ Y K G++  AR VF+ M D +VV   S+I 
Sbjct: 155 PRSLCRLVHARIIKCDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMIS 214

Query: 116 GYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKV--------------------- 154
           GY   G VE A ++F+    +D   + A+++G ++ G+                      
Sbjct: 215 GYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNIS 274

Query: 155 ---------------EAAREVFDQMPKKSSVS----WNAMINGYMKSGKINLARQLFGQM 195
                          E  ++V  Q+ K    +     +++++ Y K G IN AR++F QM
Sbjct: 275 TFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQM 334

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
             +N+ SW SMI GY  NG   EA+ELF  + +  + P++VT L ALSA S   ++  G 
Sbjct: 335 QEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGY 394

Query: 256 WIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANKKLGH-WTAIIVGLG 312
            I   M +  + +   +     ++++  + G +  A    +A+  +     W A++    
Sbjct: 395 EIFESMQRD-YSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCN 453

Query: 313 MHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM 362
           +HG  + A     E+ ++        ++ + N  +     D  +K  ++M
Sbjct: 454 LHGNVELASIAASELFKLNADKRPGAYLALSNVYASNDKWDNVSKIREVM 503


>AT1G22830.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8076921-8079032 FORWARD
           LENGTH=703
          Length = 703

 Score =  272 bits (695), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 283/536 (52%), Gaps = 51/536 (9%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           + WN++I  Y+ N R  +++ ++++M+   +  D FT P VIK C+ L     G+ +HG 
Sbjct: 150 LPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGS 209

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           +       + +V ++L++MY ++G++ +AR++FD+M +RD VSWN++I+ Y     +  A
Sbjct: 210 IEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEA 269

Query: 127 MKLFDEM----PSRDAFTW--------------------------------TALLDGLAK 150
            KL D M          TW                                 A+++GL  
Sbjct: 270 FKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKA 329

Query: 151 CGKVEAAR--EVFDQMPKKS-SVSW------NAMINGYMKSGKINLARQLFGQMPGRNLI 201
           C  + A +  +VF  +  +S S S       N++I  Y +   +  A  +F Q+   +L 
Sbjct: 330 CSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLS 389

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           +WNS+ISG+  N R  E   L + +L  G  P+H+T+ S L   + +  L +G+  H ++
Sbjct: 390 TWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYI 449

Query: 262 VKHCFDLDG-VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
           ++     D  +L  SL++MY+K G I +A  VF ++  +    +T++I G G  G  + A
Sbjct: 450 LRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVA 509

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVD 380
           L  F +M R G+KP  +T + VL+ACSH  LV EG+  F  M + + I   +EHY C+VD
Sbjct: 510 LAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVD 569

Query: 381 ILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHN-LIEADPDATG 439
           + CRAG+L +A++I  ++P  P+  +  +LL +   HGN  IGE+AA   L+E  P+  G
Sbjct: 570 LYCRAGYLDKARDIFHTIPYEPSSAMCATLLKACLIHGNTNIGEWAADKLLLETKPEHLG 629

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHP 495
            Y LL+++YA  G W K+  V+ ++ + GV K    +++E   +L+    G+ + P
Sbjct: 630 HYMLLADMYAVTGSWSKLVTVKTLLSDLGVQKAHEFALMETDSELD----GENNKP 681



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 198/450 (44%), Gaps = 58/450 (12%)

Query: 25  ALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVN 84
           +LL ++   H  +L   ++   ++  C   +    G+Q+H + +  G  FD  +   LV 
Sbjct: 70  SLLRYQSGSHEFVL---YSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVT 126

Query: 85  MYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFT 140
            Y+ +  +  A+ + +       + WN LI  Y RN   + ++ ++  M S+    D FT
Sbjct: 127 FYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFT 186

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMINGYMKSGKINLARQLFGQMP 196
           + +++   A        R V   +   S        NA+I+ Y + GK+++AR+LF +M 
Sbjct: 187 YPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMS 246

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT------------------- 237
            R+ +SWN++I+ Y    +  EA +L + +   G+  S VT                   
Sbjct: 247 ERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALN 306

Query: 238 ----------------ILSALSAVSGLAVLGNGRWIHSFMVKHC---FDLDGVLGTSLIE 278
                           +++ L A S +  L  G+  H  +++ C    D+D V   SLI 
Sbjct: 307 CVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV-RNSLIT 365

Query: 279 MYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
           MYS+C  +  A  VF+ +    L  W +II G   +  +++   L  EM   G  P+ IT
Sbjct: 366 MYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHIT 425

Query: 339 FIGVLNACSHKGLVDEGNK--CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE 396
              +L   +  G +  G +  C+ +    YK    +  +  LVD+  ++G +  AK + +
Sbjct: 426 LASILPLFARVGNLQHGKEFHCYILRRQSYKDCLIL--WNSLVDMYAKSGEIIAAKRVFD 483

Query: 397 SMPMRPNKVIWMSLLSSSRNHGNLEIGEYA 426
           SM  R +KV + SL+     +G L  GE A
Sbjct: 484 SMRKR-DKVTYTSLID---GYGRLGKGEVA 509



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 49/344 (14%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFT----------------- 43
           M +   VSWN II+CY    +  +A  L  +M    +     T                 
Sbjct: 245 MSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGA 304

Query: 44  LPCVI------------------KGCSRLHAVQEGKQIHGYVLK-IGFGFD-KFVQSSLV 83
           L CV+                  K CS + A++ GK  H  V++   F  D   V++SL+
Sbjct: 305 LNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNSLI 364

Query: 84  NMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAF 139
            MY++  ++  A  VF ++    + +WNS+I G+A N   E    L  EM       +  
Sbjct: 365 TMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHI 424

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKKSS-----VSWNAMINGYMKSGKINLARQLFGQ 194
           T  ++L   A+ G ++  +E    + ++ S     + WN++++ Y KSG+I  A+++F  
Sbjct: 425 TLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDS 484

Query: 195 MPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
           M  R+ +++ S+I GY   G+   A+  F+ + + G+ P HVT+++ LSA S   ++  G
Sbjct: 485 MRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREG 544

Query: 255 RWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAI 296
            W+ + M +H F +   L   + ++++Y + G ++ A  +F  I
Sbjct: 545 HWLFTKM-EHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTI 587



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 10/202 (4%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           +L +WN IIS + +N RS +   L ++ML     P+  TL  ++   +R+  +Q GK+ H
Sbjct: 387 SLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFH 446

Query: 65  GYVLKIGFGFDKFVQ-SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
            Y+L+     D  +  +SLV+MYAK GE+  A++VFD M  RD V++ SLIDGY R G  
Sbjct: 447 CYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKG 506

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNA 174
           EVA+  F +M       D  T  A+L   +    V     +F +M     +      ++ 
Sbjct: 507 EVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSC 566

Query: 175 MINGYMKSGKINLARQLFGQMP 196
           M++ Y ++G ++ AR +F  +P
Sbjct: 567 MVDLYCRAGYLDKARDIFHTIP 588


>AT1G22830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8076921-8079032 FORWARD
           LENGTH=703
          Length = 703

 Score =  272 bits (695), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 283/536 (52%), Gaps = 51/536 (9%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           + WN++I  Y+ N R  +++ ++++M+   +  D FT P VIK C+ L     G+ +HG 
Sbjct: 150 LPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFTYPSVIKACAALLDFAYGRVVHGS 209

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           +       + +V ++L++MY ++G++ +AR++FD+M +RD VSWN++I+ Y     +  A
Sbjct: 210 IEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMSERDAVSWNAIINCYTSEEKLGEA 269

Query: 127 MKLFDEM----PSRDAFTW--------------------------------TALLDGLAK 150
            KL D M          TW                                 A+++GL  
Sbjct: 270 FKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALNCVVGMRNCNVRIGSVAMINGLKA 329

Query: 151 CGKVEAAR--EVFDQMPKKS-SVSW------NAMINGYMKSGKINLARQLFGQMPGRNLI 201
           C  + A +  +VF  +  +S S S       N++I  Y +   +  A  +F Q+   +L 
Sbjct: 330 CSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNSLITMYSRCSDLRHAFIVFQQVEANSLS 389

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
           +WNS+ISG+  N R  E   L + +L  G  P+H+T+ S L   + +  L +G+  H ++
Sbjct: 390 TWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFHCYI 449

Query: 262 VKHCFDLDG-VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
           ++     D  +L  SL++MY+K G I +A  VF ++  +    +T++I G G  G  + A
Sbjct: 450 LRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKGEVA 509

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVD 380
           L  F +M R G+KP  +T + VL+ACSH  LV EG+  F  M + + I   +EHY C+VD
Sbjct: 510 LAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSCMVD 569

Query: 381 ILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHN-LIEADPDATG 439
           + CRAG+L +A++I  ++P  P+  +  +LL +   HGN  IGE+AA   L+E  P+  G
Sbjct: 570 LYCRAGYLDKARDIFHTIPYEPSSAMCATLLKACLIHGNTNIGEWAADKLLLETKPEHLG 629

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHP 495
            Y LL+++YA  G W K+  V+ ++ + GV K    +++E   +L+    G+ + P
Sbjct: 630 HYMLLADMYAVTGSWSKLVTVKTLLSDLGVQKAHEFALMETDSELD----GENNKP 681



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 198/450 (44%), Gaps = 58/450 (12%)

Query: 25  ALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVN 84
           +LL ++   H  +L   ++   ++  C   +    G+Q+H + +  G  FD  +   LV 
Sbjct: 70  SLLRYQSGSHEFVL---YSSASLLSTCVGFNEFVPGQQLHAHCISSGLEFDSVLVPKLVT 126

Query: 85  MYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFT 140
            Y+ +  +  A+ + +       + WN LI  Y RN   + ++ ++  M S+    D FT
Sbjct: 127 FYSAFNLLDEAQTITENSEILHPLPWNVLIGSYIRNKRFQESVSVYKRMMSKGIRADEFT 186

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMINGYMKSGKINLARQLFGQMP 196
           + +++   A        R V   +   S        NA+I+ Y + GK+++AR+LF +M 
Sbjct: 187 YPSVIKACAALLDFAYGRVVHGSIEVSSHRCNLYVCNALISMYKRFGKVDVARRLFDRMS 246

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT------------------- 237
            R+ +SWN++I+ Y    +  EA +L + +   G+  S VT                   
Sbjct: 247 ERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGALN 306

Query: 238 ----------------ILSALSAVSGLAVLGNGRWIHSFMVKHC---FDLDGVLGTSLIE 278
                           +++ L A S +  L  G+  H  +++ C    D+D V   SLI 
Sbjct: 307 CVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNV-RNSLIT 365

Query: 279 MYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
           MYS+C  +  A  VF+ +    L  W +II G   +  +++   L  EM   G  P+ IT
Sbjct: 366 MYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHIT 425

Query: 339 FIGVLNACSHKGLVDEGNK--CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE 396
              +L   +  G +  G +  C+ +    YK    +  +  LVD+  ++G +  AK + +
Sbjct: 426 LASILPLFARVGNLQHGKEFHCYILRRQSYKDCLIL--WNSLVDMYAKSGEIIAAKRVFD 483

Query: 397 SMPMRPNKVIWMSLLSSSRNHGNLEIGEYA 426
           SM  R +KV + SL+     +G L  GE A
Sbjct: 484 SMRKR-DKVTYTSLID---GYGRLGKGEVA 509



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 162/344 (47%), Gaps = 49/344 (14%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFT----------------- 43
           M +   VSWN II+CY    +  +A  L  +M    +     T                 
Sbjct: 245 MSERDAVSWNAIINCYTSEEKLGEAFKLLDRMYLSGVEASIVTWNTIAGGCLEAGNYIGA 304

Query: 44  LPCVI------------------KGCSRLHAVQEGKQIHGYVLK-IGFGFD-KFVQSSLV 83
           L CV+                  K CS + A++ GK  H  V++   F  D   V++SL+
Sbjct: 305 LNCVVGMRNCNVRIGSVAMINGLKACSHIGALKWGKVFHCLVIRSCSFSHDIDNVRNSLI 364

Query: 84  NMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAF 139
            MY++  ++  A  VF ++    + +WNS+I G+A N   E    L  EM       +  
Sbjct: 365 TMYSRCSDLRHAFIVFQQVEANSLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHI 424

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKKSS-----VSWNAMINGYMKSGKINLARQLFGQ 194
           T  ++L   A+ G ++  +E    + ++ S     + WN++++ Y KSG+I  A+++F  
Sbjct: 425 TLASILPLFARVGNLQHGKEFHCYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDS 484

Query: 195 MPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
           M  R+ +++ S+I GY   G+   A+  F+ + + G+ P HVT+++ LSA S   ++  G
Sbjct: 485 MRKRDKVTYTSLIDGYGRLGKGEVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREG 544

Query: 255 RWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAI 296
            W+ + M +H F +   L   + ++++Y + G ++ A  +F  I
Sbjct: 545 HWLFTKM-EHVFGIRLRLEHYSCMVDLYCRAGYLDKARDIFHTI 587



 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 108/202 (53%), Gaps = 10/202 (4%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           +L +WN IIS + +N RS +   L ++ML     P+  TL  ++   +R+  +Q GK+ H
Sbjct: 387 SLSTWNSIISGFAYNERSEETSFLLKEMLLSGFHPNHITLASILPLFARVGNLQHGKEFH 446

Query: 65  GYVLKIGFGFDKFVQ-SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
            Y+L+     D  +  +SLV+MYAK GE+  A++VFD M  RD V++ SLIDGY R G  
Sbjct: 447 CYILRRQSYKDCLILWNSLVDMYAKSGEIIAAKRVFDSMRKRDKVTYTSLIDGYGRLGKG 506

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNA 174
           EVA+  F +M       D  T  A+L   +    V     +F +M     +      ++ 
Sbjct: 507 EVALAWFKDMDRSGIKPDHVTMVAVLSACSHSNLVREGHWLFTKMEHVFGIRLRLEHYSC 566

Query: 175 MINGYMKSGKINLARQLFGQMP 196
           M++ Y ++G ++ AR +F  +P
Sbjct: 567 MVDLYCRAGYLDKARDIFHTIP 588


>AT3G49740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:18447788-18450001 FORWARD
           LENGTH=737
          Length = 737

 Score =  272 bits (695), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/480 (32%), Positives = 268/480 (55%), Gaps = 14/480 (2%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V++N++I   +   + +++LL+FR+ML   L P   T   V+  CS       G Q+HG 
Sbjct: 258 VTFNVVIDG-LAGFKRDESLLVFRKMLEASLRPTDLTFVSVMGSCS---CAAMGHQVHGL 313

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
            +K G+     V ++ + MY+ + + G A KVF+ + ++D+V+WN++I  Y +    + A
Sbjct: 314 AIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEKDLVTWNTMISSYNQAKLGKSA 373

Query: 127 MKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-NAMINGYMK 181
           M ++  M       D FT+ +LL        +E  +    +    S +   NA+I+ Y K
Sbjct: 374 MSVYKRMHIIGVKPDEFTFGSLLATSLDLDVLEMVQACIIKFGLSSKIEISNALISAYSK 433

Query: 182 SGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG--LMPSHVTIL 239
           +G+I  A  LF +   +NLISWN++ISG+  NG   E +E F  LL+    ++P   T+ 
Sbjct: 434 NGQIEKADLLFERSLRKNLISWNAIISGFYHNGFPFEGLERFSCLLESEVRILPDAYTLS 493

Query: 240 SALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK 299
           + LS     + L  G   H+++++H    + ++G +LI MYS+CG+I+++L VF  ++ K
Sbjct: 494 TLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEK 553

Query: 300 KLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSHKGLVDEGNKC 358
            +  W ++I     HG  + A+  +  M+  G + P A TF  VL+ACSH GLV+EG + 
Sbjct: 554 DVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEI 613

Query: 359 FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE-SMPMRPNKV-IWMSLLSSSRN 416
           F+ M+  + ++  V+H+ CLVD+L RAGHL +A+++++ S     ++V +W +L S+   
Sbjct: 614 FNSMVEFHGVIRNVDHFSCLVDLLGRAGHLDEAESLVKISEKTIGSRVDVWWALFSACAA 673

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           HG+L++G+  A  L+E + D    Y  LSNIYA AG W +    R  +   G +K  GCS
Sbjct: 674 HGDLKLGKMVAKLLMEKEKDDPSVYVQLSNIYAGAGMWKEAEETRRAINMIGAMKQRGCS 733



 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 217/491 (44%), Gaps = 57/491 (11%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLH-HDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +  TL++ N  ++    +  + +AL LF  +     L PD +++   I     L     G
Sbjct: 17  NSTTLLNLNRRLTGLTRSGENRNALKLFADVHRCTTLRPDQYSVSLAITTARHLRDTIFG 76

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+H Y ++ G      V ++L+++Y + G +   +K FD++ + DV SW +L+    + 
Sbjct: 77  GQVHCYAIRSGLLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKL 136

Query: 121 GNVEVAMKLFDEMPSRDAFT-WTALLDGLAKCGKVEAAREVFDQMPK------------- 166
           G++E A ++FD+MP RD    W A++ G  + G  E + E+F +M K             
Sbjct: 137 GDIEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATI 196

Query: 167 --------------------------KSSVSWNAMINGYMKSGKINLARQLFGQ--MPGR 198
                                      SSV  NA+I  Y     +  A  +F +  +  R
Sbjct: 197 LSMCDYGSLDFGKQVHSLVIKAGFFIASSVV-NALITMYFNCQVVVDACLVFEETDVAVR 255

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           + +++N +I G     R  E++ +F  +L+  L P+ +T +S + + S  A+   G  +H
Sbjct: 256 DQVTFNVVIDGLAGFKRD-ESLLVFRKMLEASLRPTDLTFVSVMGSCSCAAM---GHQVH 311

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
              +K  ++   ++  + + MYS      +A  VF+++  K L  W  +I       L  
Sbjct: 312 GLAIKTGYEKYTLVSNATMTMYSSFEDFGAAHKVFESLEEKDLVTWNTMISSYNQAKLGK 371

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL 378
            A+ ++  M  IG+KP   TF  +L       +++    C    I ++ +   +E    L
Sbjct: 372 SAMSVYKRMHIIGVKPDEFTFGSLLATSLDLDVLEMVQAC----IIKFGLSSKIEISNAL 427

Query: 379 VDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD---- 434
           +    + G +++A  + E   +R N + W +++S   ++G    G      L+E++    
Sbjct: 428 ISAYSKNGQIEKADLLFER-SLRKNLISWNAIISGFYHNGFPFEGLERFSCLLESEVRIL 486

Query: 435 PDATGCYTLLS 445
           PDA    TLLS
Sbjct: 487 PDAYTLSTLLS 497



 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 96/169 (56%), Gaps = 7/169 (4%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD--LLPDGFTLPCVIKGCSRLHAVQEG 60
           +  L+SWN IIS + HN    + L  F  +L  +  +LPD +TL  ++  C    ++  G
Sbjct: 449 RKNLISWNAIISGFYHNGFPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLG 508

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q H YVL+ G   +  + ++L+NMY++ G +  + +VF++M ++DVVSWNSLI  Y+R+
Sbjct: 509 SQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRH 568

Query: 121 GNVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQM 164
           G  E A+  +  M        DA T++A+L   +  G VE   E+F+ M
Sbjct: 569 GEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEIFNSM 617



 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 168/352 (47%), Gaps = 31/352 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +  LV+WN +IS Y        A+ ++++M    + PD FT   ++     L  ++  
Sbjct: 349 LEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLLATSLDLDVLE-- 406

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +   ++K G      + ++L++ Y+K G++  A  +F++ + ++++SWN++I G+  N
Sbjct: 407 -MVQACIIKFGLSSKIEISNALISAYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHN 465

Query: 121 GNVEVAMKLFD---EMPSR---DAFTWTALLDGLAKCGKVEAARE----VFDQMPKKSSV 170
           G     ++ F    E   R   DA+T + LL        +    +    V      K ++
Sbjct: 466 GFPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETL 525

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             NA+IN Y + G I  + ++F QM  ++++SWNS+IS Y  +G    A+  ++ +  EG
Sbjct: 526 IGNALINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEG 585

Query: 231 -LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG-----TSLIEMYSKCG 284
            ++P   T  + LSA S   ++  G  I + MV    +  GV+      + L+++  + G
Sbjct: 586 KVIPDAATFSAVLSACSHAGLVEEGLEIFNSMV----EFHGVIRNVDHFSCLVDLLGRAG 641

Query: 285 SIESALAVFKAIANKKLGH----WTAIIVGLGMHG---LADQALELFMEMRR 329
            ++ A ++ K I+ K +G     W A+      HG   L     +L ME  +
Sbjct: 642 HLDEAESLVK-ISEKTIGSRVDVWWALFSACAAHGDLKLGKMVAKLLMEKEK 692



 Score =  105 bits (263), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 208/478 (43%), Gaps = 23/478 (4%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN +I+    +     ++ LFR+M    +  D F    ++  C    ++  GKQ+H  V+
Sbjct: 158 WNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILSMCD-YGSLDFGKQVHSLVI 216

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDK--MVDRDVVSWNSLIDGYA---RNGNV 123
           K GF     V ++L+ MY     +  A  VF++  +  RD V++N +IDG A   R+ ++
Sbjct: 217 KAGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDGLAGFKRDESL 276

Query: 124 EVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGY 179
            V  K+ +        T+ ++   +  C       +V     K    K ++  NA +  Y
Sbjct: 277 LVFRKMLEASLRPTDLTFVSV---MGSCSCAAMGHQVHGLAIKTGYEKYTLVSNATMTMY 333

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
                   A ++F  +  ++L++WN+MIS Y        AM +++ +   G+ P   T  
Sbjct: 334 SSFEDFGAAHKVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFG 393

Query: 240 SALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK 299
           S L+    L VL     + + ++K        +  +LI  YSK G IE A  +F+    K
Sbjct: 394 SLLATSLDLDVL---EMVQACIIKFGLSSKIEISNALISAYSKNGQIEKADLLFERSLRK 450

Query: 300 KLGHWTAIIVGLGMHGLADQALELF--MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
            L  W AII G   +G   + LE F  +    + + P A T   +L+ C     +  G++
Sbjct: 451 NLISWNAIISGFYHNGFPFEGLERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGSQ 510

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
               ++   +   T+     L+++  + G +Q +  +   M  + + V W SL+S+   H
Sbjct: 511 THAYVLRHGQFKETLIG-NALINMYSQCGTIQNSLEVFNQMSEK-DVVSWNSLISAYSRH 568

Query: 418 GNLE--IGEYAA-HNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           G  E  +  Y    +  +  PDA     +LS    A    + +     M++  GV+++
Sbjct: 569 GEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRN 626



 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 144/314 (45%), Gaps = 22/314 (7%)

Query: 143 ALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
            LL    + G + + ++ FD++ +    SW  +++   K G I  A ++F +MP R+ ++
Sbjct: 97  TLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVA 156

Query: 203 -WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFM 261
            WN+MI+G + +G    ++ELF  + K G+        + LS +     L  G+ +HS +
Sbjct: 157 IWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFATILS-MCDYGSLDFGKQVHSLV 215

Query: 262 VKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLA-DQA 320
           +K  F +   +  +LI MY  C  +  A  VF+          T  +V  G+ G   D++
Sbjct: 216 IKAGFFIASSVVNALITMYFNCQVVVDACLVFEETDVAVRDQVTFNVVIDGLAGFKRDES 275

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI----NEYKIV--PTVEH 374
           L +F +M    ++P  +TF+ V+ +CS   +   G++   + I     +Y +V   T+  
Sbjct: 276 LLVFRKMLEASLRPTDLTFVSVMGSCSCAAM---GHQVHGLAIKTGYEKYTLVSNATMTM 332

Query: 375 YGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH--GNLEIGEYAAHNLIE 432
           Y    D          A  + ES+  + + V W +++SS      G   +  Y   ++I 
Sbjct: 333 YSSFED-------FGAAHKVFESLEEK-DLVTWNTMISSYNQAKLGKSAMSVYKRMHIIG 384

Query: 433 ADPDATGCYTLLSN 446
             PD     +LL+ 
Sbjct: 385 VKPDEFTFGSLLAT 398


>AT2G17210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7485398-7487602 REVERSE
           LENGTH=715
          Length = 715

 Score =  271 bits (693), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/529 (30%), Positives = 286/529 (54%), Gaps = 22/529 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQE 59
           M +  ++SW+++I  YV +      L LF++M+H     PD  T+  V+K C+ +  +  
Sbjct: 185 MSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDV 244

Query: 60  GKQIHGYVLKIGFGF-DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           G+ +HG+ ++ GF   D FV +SL++MY+K  ++  A +VFD+   R++VSWNS++ G+ 
Sbjct: 245 GRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFV 304

Query: 119 RNGNVEVAMKLF----DEMPSRDAFTWTALL------DGLAKCGKVEAAREVFDQMPKKS 168
            N   + A+++F     E    D  T  +LL      +    C  +     +  +  + +
Sbjct: 305 HNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGV--IIRRGYESN 362

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
            V+ +++I+ Y     ++ A  +   M  ++++S ++MISG    GR  EA+ +F  +  
Sbjct: 363 EVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRD 422

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIE 287
               P+ +T++S L+A S  A L   +W H   ++    ++ + +GTS+++ Y+KCG+IE
Sbjct: 423 ---TPNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIE 479

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            A   F  I  K +  WT II    ++GL D+AL LF EM++ G  P+A+T++  L+AC+
Sbjct: 480 MARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACN 539

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP--MRPNKV 405
           H GLV +G   F  M+ E    P+++HY C+VD+L RAG +  A  +I+++P  ++    
Sbjct: 540 HGGLVKKGLMIFKSMVEEDH-KPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGAS 598

Query: 406 IWMSLLSSSRNH-GNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMM 464
            W ++LS  RN    L I       ++E +P  +  Y L S+ +AA   W+ V+ +R ++
Sbjct: 599 AWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFAAEKSWEDVAMMRRLV 658

Query: 465 KERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKL 513
           KER V   AG S+V       RF+ GDK       +   ++ + + +KL
Sbjct: 659 KERKVRVVAGYSMVREGNLAKRFLAGDKLSQSDSELNDVVQSLHRCMKL 707



 Score =  173 bits (439), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 213/428 (49%), Gaps = 17/428 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M+    VSWN+I+   +      + L  F ++      P+  TL  VI  C  L    +G
Sbjct: 87  MNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHACRSLWF--DG 144

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           ++IHGYV++ GF     VQ+S++ MYA    +  ARK+FD+M +RDV+SW+ +I  Y ++
Sbjct: 145 EKIHGYVIRSGFCGISSVQNSILCMYADSDSLS-ARKLFDEMSERDVISWSVVIRSYVQS 203

Query: 121 GNVEVAMKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK-----SSV 170
               V +KLF EM        D  T T++L        ++  R V     ++        
Sbjct: 204 KEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMEDIDVGRSVHGFSIRRGFDLADVF 263

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             N++I+ Y K   ++ A ++F +   RN++SWNS+++G+  N R+ EA+E+F ++++E 
Sbjct: 264 VCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILAGFVHNQRYDEALEMFHLMVQEA 323

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           +    VT++S L            + IH  +++  ++ + V  +SLI+ Y+ C  ++ A 
Sbjct: 324 VEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAG 383

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            V  ++  K +   + +I GL   G +D+A+ +F  MR     P+AIT I +LNACS   
Sbjct: 384 TVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHMRD---TPNAITVISLLNACSVSA 440

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            +        + I     +  +     +VD   + G ++ A+   + +  + N + W  +
Sbjct: 441 DLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFDQITEK-NIISWTVI 499

Query: 411 LSSSRNHG 418
           +S+   +G
Sbjct: 500 ISAYAING 507



 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 13/276 (4%)

Query: 168 SSVSW----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF 223
           + +SW    N++ + YMK G +    + F  M  R+ +SWN ++ G    G   E +  F
Sbjct: 56  AKLSWLFQGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWF 115

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
             L   G  P+  T++  + A   L    +G  IH ++++  F     +  S++ MY+  
Sbjct: 116 SKLRVWGFEPNTSTLVLVIHACRSLWF--DGEKIHGYVIRSGFCGISSVQNSILCMYADS 173

Query: 284 GSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGV 342
            S+ SA  +F  ++ + +  W+ +I            L+LF EM      +P  +T   V
Sbjct: 174 DSL-SARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSV 232

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
           L AC+    +D G       I     +  V     L+D+  +   +  A  + +    R 
Sbjct: 233 LKACTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCR- 291

Query: 403 NKVIWMSLLS----SSRNHGNLEIGEYAAHNLIEAD 434
           N V W S+L+    + R    LE+        +E D
Sbjct: 292 NIVSWNSILAGFVHNQRYDEALEMFHLMVQEAVEVD 327



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL-GTSLIEMYSKCGSIESALAVFKAI 296
           ++S  S +    V  N  ++   + K C  L  +  G S+ + Y KCG + S L  F  +
Sbjct: 28  VVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGNSIADFYMKCGDLCSGLREFDCM 87

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
            ++    W  I+ GL  +G  ++ L  F ++R  G +P+  T + V++AC
Sbjct: 88  NSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFEPNTSTLVLVIHAC 137


>AT1G17630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6064525-6066720 FORWARD
           LENGTH=731
          Length = 731

 Score =  271 bits (693), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 176/598 (29%), Positives = 285/598 (47%), Gaps = 92/598 (15%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN I+   V +    +AL L+R M    L  DG+ LP +++ C  L      +  H  V+
Sbjct: 126 WNSILKANVSHGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVI 185

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----------------------- 105
           +IG   +  V + L+ +Y K G MG A  +F +M  R                       
Sbjct: 186 QIGLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVK 245

Query: 106 ------------DVVSWNSLIDGYARNGNVEVAMKLF----------------------- 130
                       D V+W S++  +++ G  E  +K F                       
Sbjct: 246 IFEWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCA 305

Query: 131 ---------------------DEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS 169
                                + +PSR+A     L+    K GKV+ A  +F Q+  K  
Sbjct: 306 ELEALSIAEKVHGYVIKGGFEEYLPSRNA-----LIHVYGKQGKVKDAEHLFRQIRNKGI 360

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMP--------GRNLISWNSMISGYQLNGRFLEAME 221
            SWN++I  ++ +GK++ A  LF ++           N+++W S+I G  + GR  +++E
Sbjct: 361 ESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLE 420

Query: 222 LFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
            F  +    ++ + VTI   LS  + L  L  GR IH  +++     + ++  +L+ MY+
Sbjct: 421 YFRQMQFSKVLANSVTICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYA 480

Query: 282 KCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           KCG +     VF+AI +K L  W +II G GMHG A++AL +F  M   G  P  I  + 
Sbjct: 481 KCGLLSEGSLVFEAIRDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVA 540

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
           VL+ACSH GLV++G + F  M   + + P  EHY C+VD+L R G L++A  I+++MPM 
Sbjct: 541 VLSACSHAGLVEKGREIFYSMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPME 600

Query: 402 PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVR 461
           P   +  +LL+S R H N++I E  A  L   +P+ TG Y LLSNIY+A G+W++ ++VR
Sbjct: 601 PKVCVLGALLNSCRMHKNVDIAEGIASQLSVLEPERTGSYMLLSNIYSAGGRWEESANVR 660

Query: 462 EMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPD 519
            + K++ + K +G S +E + K  +F  G     + + IY  L ++   +   G   D
Sbjct: 661 ALAKKKDLKKVSGSSWIEVKKKKYKFSSGSIVQSEFETIYPVLEDLVSHMLKKGPTHD 718



 Score =  119 bits (298), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 172/398 (43%), Gaps = 80/398 (20%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP  V+W  ++SC+    +  D L  F  M        G  L      C+ L A+   ++
Sbjct: 256 KPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAELEALSIAEK 315

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +HGYV+K GF      +++L+++Y K G++  A  +F ++ ++ + SWNSLI  +   G 
Sbjct: 316 VHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLITSFVDAGK 375

Query: 123 VEVAMKLFDEMPS--------RDAFTWTALLDGLAKCGKVEAAREVFDQM---------- 164
           ++ A+ LF E+           +  TWT+++ G    G+ + + E F QM          
Sbjct: 376 LDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQMQFSKVLANSV 435

Query: 165 ------------PK------------KSSVS-----WNAMINGYMKSGKINLARQLFGQM 195
                       P             ++S+S      NA++N Y K G ++    +F  +
Sbjct: 436 TICCILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAI 495

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
             ++LISWNS+I GY ++G   +A+ +F+ ++  G  P  + +++ LSA S   ++  GR
Sbjct: 496 RDKDLISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGR 555

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHG 315
            I   M K  F L+                              +  H+  I+  LG  G
Sbjct: 556 EIFYSMSKR-FGLE-----------------------------PQQEHYACIVDLLGRVG 585

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
              +A E+   ++ + M+P       +LN+C     VD
Sbjct: 586 FLKEASEI---VKNMPMEPKVCVLGALLNSCRMHKNVD 620



 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 160/358 (44%), Gaps = 51/358 (14%)

Query: 56  AVQEGKQIHGYVLKIGFGFDK-FVQSSLVNMYAKWGEMGLARKVFDK---MVDRDVVSWN 111
             Q+ +Q+H  VL   F F    + ++L+++YA+ G +  AR VF+    ++  D+  WN
Sbjct: 68  TAQQCRQVHAQVLLSDFIFRSGSLAANLISVYARLGLLLDARNVFETVSLVLLSDLRLWN 127

Query: 112 SLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP-- 165
           S++     +G  E A++L+  M  R    D +    +L      G+    R    Q+   
Sbjct: 128 SILKANVSHGLYENALELYRGMRQRGLTGDGYILPLILRACRYLGRFGLCRAFHTQVIQI 187

Query: 166 --KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF 223
             K++    N ++  Y K+G++  A  LF +MP RN +SWN MI G+        A+++F
Sbjct: 188 GLKENLHVVNELLTLYPKAGRMGDAYNLFVEMPVRNRMSWNVMIKGFSQEYDCESAVKIF 247

Query: 224 EVLLKEGLMPSHVTILSALS-----------------------AVSG------------L 248
           E + +E   P  VT  S LS                       AVSG            L
Sbjct: 248 EWMQREEFKPDEVTWTSVLSCHSQCGKFEDVLKYFHLMRMSGNAVSGEALAVFFSVCAEL 307

Query: 249 AVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAII 308
             L     +H +++K  F+       +LI +Y K G ++ A  +F+ I NK +  W ++I
Sbjct: 308 EALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGIESWNSLI 367

Query: 309 VGLGMHGLADQALELFMEMRRI----GMKPHAITFIGVLNACSHKGLVDEGNKCFDMM 362
                 G  D+AL LF E+  +     +K + +T+  V+  C+ +G  D+  + F  M
Sbjct: 368 TSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLEYFRQM 425


>AT2G04860.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:1706787-1708865 REVERSE
           LENGTH=692
          Length = 692

 Score =  271 bits (692), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 248/477 (51%), Gaps = 15/477 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M   + VSWN +I  Y  +    +A+ +F+ M   ++       P  I      H   E 
Sbjct: 212 MKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEIS----PVTIINLLSAHVSHE- 266

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H  V+K G   D  V +SLV  Y++ G +  A +++       +V   S++  YA  
Sbjct: 267 -PLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEK 325

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMI 176
           G++++A+  F +        DA     +L G  K   ++    +     K    +   ++
Sbjct: 326 GDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVV 385

Query: 177 NG----YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELF-EVLLKEGL 231
           NG    Y K   +     LF Q+    LISWNS+ISG   +GR   A E+F +++L  GL
Sbjct: 386 NGLITMYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGL 445

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           +P  +TI S L+  S L  L  G+ +H + +++ F+ +  + T+LI+MY+KCG+   A +
Sbjct: 446 LPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAES 505

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VFK+I       W ++I G  + GL  +AL  ++EMR  G+KP  ITF+GVL+AC+H G 
Sbjct: 506 VFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGF 565

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           VDEG  CF  MI E+ I PT++HY  +V +L RA    +A  +I  M ++P+  +W +LL
Sbjct: 566 VDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALL 625

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
           S+   H  LE+GEY A  +   D    G Y L+SN+YA    WD V  VR MMK+ G
Sbjct: 626 SACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 682



 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 215/450 (47%), Gaps = 24/450 (5%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCS-RLHAVQ-EGKQIHGYV 67
           +L+ SC +H   S+  + +FR +L   L P+ FT+   ++  +   ++ + + +Q+  ++
Sbjct: 18  SLLKSC-IHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTHL 76

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
            K G     +V++SL+N+Y K G +  A+ +FD+M +RD V WN+LI GY+RNG    A 
Sbjct: 77  TKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAW 136

Query: 128 KLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGY 179
           KLF  M     S  A T   LL    +CG V   R V     K      S   NA+I+ Y
Sbjct: 137 KLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFY 196

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
            K  ++  A  LF +M  ++ +SWN+MI  Y  +G   EA+ +F+ + ++ +  S VTI+
Sbjct: 197 SKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTII 256

Query: 240 SALSA-VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
           + LSA VS          +H  +VK     D  + TSL+  YS+CG + SA  ++ +   
Sbjct: 257 NLLSAHVS-------HEPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAERLYASAKQ 309

Query: 299 KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKC 358
             +   T+I+      G  D A+  F + R++ MK  A+  +G+L+ C     +D G   
Sbjct: 310 DSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSHIDIGMSL 369

Query: 359 FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
               I       T+   G L+ +  +   ++    + E +   P  + W S++S     G
Sbjct: 370 HGYAIKSGLCTKTLVVNG-LITMYSKFDDVETVLFLFEQLQETP-LISWNSVISGCVQSG 427

Query: 419 NLEIGEYAAHNLIEAD---PDATGCYTLLS 445
                    H ++      PDA    +LL+
Sbjct: 428 RASTAFEVFHQMMLTGGLLPDAITIASLLA 457



 Score =  138 bits (348), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 191/430 (44%), Gaps = 35/430 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +   V WN +I  Y  N    DA  LF  ML     P   TL  ++  C +   V +G
Sbjct: 111 MPERDTVVWNALICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQG 170

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +HG   K G   D  V+++L++ Y+K  E+G A  +F +M D+  VSWN++I  Y+++
Sbjct: 171 RSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQS 230

Query: 121 GNVEVAMKLFDEMPSRDA----FTWTALLDG----------LAKCGKVEAAREVFDQMPK 166
           G  E A+ +F  M  ++      T   LL            + KCG V     V      
Sbjct: 231 GLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSHEPLHCLVVKCGMVNDISVV------ 284

Query: 167 KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
                  +++  Y + G +  A +L+      +++   S++S Y   G    A+  F   
Sbjct: 285 ------TSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKT 338

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
            +  +    V ++  L      + +  G  +H + +K       ++   LI MYSK   +
Sbjct: 339 RQLCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDV 398

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITFIGVLNA 345
           E+ L +F+ +    L  W ++I G    G A  A E+F +M    G+ P AIT   +L  
Sbjct: 399 ETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAG 458

Query: 346 CSHKGLVDEGNKCFDMMI-NEYKIVPTVEHYGC--LVDILCRAGHLQQAKNIIESMPMRP 402
           CS    ++ G +     + N ++     E++ C  L+D+  + G+  QA+++ +S+   P
Sbjct: 459 CSQLCCLNLGKELHGYTLRNNFE----NENFVCTALIDMYAKCGNEVQAESVFKSIK-AP 513

Query: 403 NKVIWMSLLS 412
               W S++S
Sbjct: 514 CTATWNSMIS 523


>AT1G32415.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:11695611-11697896 FORWARD LENGTH=761
          Length = 761

 Score =  268 bits (684), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/511 (33%), Positives = 265/511 (51%), Gaps = 47/511 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLH--HDLLPDGFTLPCVIKGCSRLHAV- 57
           M +  +VSW  +IS +  N    +AL+LF +M      + P+G TL  +   C  L    
Sbjct: 257 MPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAYACGGLGVEF 316

Query: 58  -QEGKQIHGYVLKIGF---GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSL 113
            + G+Q+H  V+  G+     D  +  SLV+MYA  G +  A+ + ++    D+ S N +
Sbjct: 317 RRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESF--DLQSCNII 374

Query: 114 IDGYARNGNVEVAMKLFDEMPS-RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW 172
           I+ Y +NG++E A  LF+ + S  D  +WT+++DG  + G V  A  +F ++  K  V+W
Sbjct: 375 INRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLHDKDGVTW 434

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
             MI+G ++                               N  F EA  L   +++ GL 
Sbjct: 435 TVMISGLVQ-------------------------------NELFAEAASLLSDMVRCGLK 463

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKH--CFDLDGVLGTSLIEMYSKCGSIESAL 290
           P + T    LS+    + L  G+ IH  + K   C+D D +L  SL+ MY+KCG+IE A 
Sbjct: 464 PLNSTYSVLLSSAGATSNLDQGKHIHCVIAKTTACYDPDLILQNSLVSMYAKCGAIEDAY 523

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F  +  K    W ++I+GL  HGLAD+AL LF EM   G KP+++TF+GVL+ACSH G
Sbjct: 524 EIFAKMVQKDTVSWNSMIMGLSHHGLADKALNLFKEMLDSGKKPNSVTFLGVLSACSHSG 583

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           L+  G + F  M   Y I P ++HY  ++D+L RAG L++A+  I ++P  P+  ++ +L
Sbjct: 584 LITRGLELFKAMKETYSIQPGIDHYISMIDLLGRAGKLKEAEEFISALPFTPDHTVYGAL 643

Query: 411 LS----SSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
           L     + R+     I E AA  L+E DP     +  L N+YA  G+ D    +R+ M  
Sbjct: 644 LGLCGLNWRDKDAEGIAERAAMRLLELDPVNAPGHVALCNVYAGLGRHDMEKEMRKEMGI 703

Query: 467 RGVLKDAGCSIVEHRGKLNRFIVGDKSHPQT 497
           +GV K  GCS V   G+ N F+ GDKS  + 
Sbjct: 704 KGVKKTPGCSWVVVNGRANVFLSGDKSASEA 734



 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/491 (25%), Positives = 217/491 (44%), Gaps = 97/491 (19%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V W  ++S Y      ++A +LF  M   +++     L   +K C R++          
Sbjct: 77  VVYWTSLLSKYAKTGYLDEARVLFEVMPERNIVTCNAMLTGYVK-CRRMN--------EA 127

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           + L      +    + ++      G    A ++FD+M +R+VVSWN+L+ G  RNG++E 
Sbjct: 128 WTLFREMPKNVVSWTVMLTALCDDGRSEDAVELFDEMPERNVVSWNTLVTGLIRNGDMEK 187

Query: 126 AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKI 185
           A ++FD MPSRD  +W A++ G  +   +E A+ +F  M +K+ V+W +M+ GY + G +
Sbjct: 188 AKQVFDAMPSRDVVSWNAMIKGYIENDGMEEAKLLFGDMSEKNVVTWTSMVYGYCRYGDV 247

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK--EGLMPSHVTILSALS 243
             A +LF +MP RN++SW +MISG+  N  + EA+ LF  + K  + + P+  T++S   
Sbjct: 248 REAYRLFCEMPERNIVSWTAMISGFAWNELYREALMLFLEMKKDVDAVSPNGETLISLAY 307

Query: 244 AVSGLAVLGN--GRWIHSFMVKH---CFDLDGVLGTSLIEMYSKCGSIESALAVFKA--- 295
           A  GL V     G  +H+ ++ +     D DG L  SL+ MY+  G I SA ++      
Sbjct: 308 ACGGLGVEFRRLGEQLHAQVISNGWETVDHDGRLAKSLVHMYASSGLIASAQSLLNESFD 367

Query: 296 ------IANKKLGH---------------------WTAI--------------------- 307
                 I N+ L +                     WT++                     
Sbjct: 368 LQSCNIIINRYLKNGDLERAETLFERVKSLHDKVSWTSMIDGYLEAGDVSRAFGLFQKLH 427

Query: 308 ----------IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG-- 355
                     I GL  + L  +A  L  +M R G+KP   T+  +L++      +D+G  
Sbjct: 428 DKDGVTWTVMISGLVQNELFAEAASLLSDMVRCGLKPLNSTYSVLLSSAGATSNLDQGKH 487

Query: 356 --------NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
                     C+D         P +     LV +  + G ++ A  I   M ++ + V W
Sbjct: 488 IHCVIAKTTACYD---------PDLILQNSLVSMYAKCGAIEDAYEIFAKM-VQKDTVSW 537

Query: 408 MSLLSSSRNHG 418
            S++    +HG
Sbjct: 538 NSMIMGLSHHG 548


>AT5G08305.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:2670134-2671738 REVERSE
           LENGTH=534
          Length = 534

 Score =  266 bits (681), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/494 (33%), Positives = 266/494 (53%), Gaps = 45/494 (9%)

Query: 56  AVQEGKQIHGYVLKIGFGFDK-FVQSSL-VNMYAKWGEMGLARKVFDKMVDRDVVSWNSL 113
           ++ E  +IH  ++ +G   ++ FV  +L  +  +  G++  A K   K+ D     WN +
Sbjct: 20  SMSELYKIHTLLITLGLSEEEPFVSQTLSFSALSSSGDVDYAYKFLSKLSDPPNYGWNFV 79

Query: 114 IDGYARNGNVEVAMKLFDEMPS----RDAFTWTAL-----------LDGLAKCGKVEA-- 156
           I G++ + N E ++ ++ +M       D  T+  L           L G   C  V++  
Sbjct: 80  IRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGL 139

Query: 157 ----------------------AREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQ 194
                                 AR++FD+MP K+ V+WN++++ Y KSG +  AR +F +
Sbjct: 140 EWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDE 199

Query: 195 MPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH-VTILSALSAVSGLAVLGN 253
           M  R++++W+SMI GY   G + +A+E+F+ +++ G   ++ VT++S + A + L  L  
Sbjct: 200 MSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNR 259

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH--WTAIIVGL 311
           G+ +H +++     L  +L TSLI+MY+KCGSI  A +VF   + K+     W AII GL
Sbjct: 260 GKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGL 319

Query: 312 GMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPT 371
             HG   ++L+LF +MR   + P  ITF+ +L ACSH GLV E    F  +  E    P 
Sbjct: 320 ASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACSHGGLVKEAWHFFKSL-KESGAEPK 378

Query: 372 VEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLI 431
            EHY C+VD+L RAG ++ A + I  MP++P   +  +LL+   NHGNLE+ E     LI
Sbjct: 379 SEHYACMVDVLSRAGLVKDAHDFISEMPIKPTGSMLGALLNGCINHGNLELAETVGKKLI 438

Query: 432 EADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGD 491
           E  P   G Y  L+N+YA   ++     +RE M+++GV K AG SI++  G  +RFI  D
Sbjct: 439 ELQPHNDGRYVGLANVYAINKQFRAARSMREAMEKKGVKKIAGHSILDLDGTRHRFIAHD 498

Query: 492 KSHPQTKAIYAKLR 505
           K+H  +  IYA L+
Sbjct: 499 KTHFHSDKIYAVLQ 512



 Score =  146 bits (368), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 173/392 (44%), Gaps = 76/392 (19%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +  P    WN +I  + ++     ++ ++ QML   LLPD  T P ++K  SRL   + G
Sbjct: 68  LSDPPNYGWNFVIRGFSNSRNPEKSISVYIQMLRFGLLPDHMTYPFLMKSSSRLSNRKLG 127

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H  V+K G  +D F+ ++L++MY  + +   ARK+FD+M  +++V+WNS++D YA++
Sbjct: 128 GSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARKLFDEMPHKNLVTWNSILDAYAKS 187

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN------- 173
           G+V  A  +FDEM  RD  TW++++DG  K G+   A E+FDQM +  S   N       
Sbjct: 188 GDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSV 247

Query: 174 ---------------------------------AMINGYMKSGKINLARQLF--GQMPGR 198
                                            ++I+ Y K G I  A  +F    +   
Sbjct: 248 ICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKET 307

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           + + WN++I G   +G   E+++LF  + +  + P  +T L  L+A S           H
Sbjct: 308 DALMWNAIIGGLASHGFIRESLQLFHKMRESKIDPDEITFLCLLAACS-----------H 356

Query: 259 SFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD 318
             +VK  +     L  S  E  S+                    H+  ++  L   GL  
Sbjct: 357 GGLVKEAWHFFKSLKESGAEPKSE--------------------HYACMVDVLSRAGLVK 396

Query: 319 QALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            A +   EM    +KP       +LN C + G
Sbjct: 397 DAHDFISEM---PIKPTGSMLGALLNGCINHG 425


>AT3G05340.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1524071-1526047 REVERSE
           LENGTH=658
          Length = 658

 Score =  266 bits (679), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 162/528 (30%), Positives = 275/528 (52%), Gaps = 11/528 (2%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           ++S N++   ++ N  +    +L ++ML      D  TL  V+  C         K IH 
Sbjct: 121 VISQNIVFYGFLRNRETESGFVLLKRMLGSGGF-DHATLTIVLSVCDTPEFCLVTKMIHA 179

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
             +  G+  +  V + L+  Y K G     R VFD M  R+V++  ++I G   N   E 
Sbjct: 180 LAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDGMSHRNVITLTAVISGLIENELHED 239

Query: 126 AMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW----NAMIN 177
            ++LF  M       ++ T+ + L   +   ++   +++   + K    S     +A+++
Sbjct: 240 GLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEGQQIHALLWKYGIESELCIESALMD 299

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K G I  A  +F      + +S   ++ G   NG   EA++ F  +L+ G+      
Sbjct: 300 MYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQNGSEEEAIQFFIRMLQAGV-EIDAN 358

Query: 238 ILSALSAVSGLA-VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           ++SA+  VS +   LG G+ +HS ++K  F  +  +   LI MYSKCG +  +  VF+ +
Sbjct: 359 VVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRM 418

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
             +    W ++I     HG    AL+L+ EM  + +KP  +TF+ +L+ACSH GL+D+G 
Sbjct: 419 PKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGR 478

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
           +  + M   + I P  EHY C++D+L RAG L++AK+ I+S+P++P+  IW +LL +   
Sbjct: 479 ELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSF 538

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           HG+ E+GEYAA  L +  PD++  + L++NIY++ GKW + +   + MK  GV K+ G S
Sbjct: 539 HGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGIS 598

Query: 477 IVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVL 524
            +E   K + F+V DK HPQ +AIY  L  +   +   G+ PD   +L
Sbjct: 599 SIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGYRPDKRFIL 646



 Score =  145 bits (367), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 193/401 (48%), Gaps = 18/401 (4%)

Query: 78  VQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRD 137
           V +SL+++YAK G++  A K+FD+M  RDV+S N +  G+ RN   E    L   M    
Sbjct: 92  VWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG 151

Query: 138 AFTWTALLDGLAKCGKVEA--------AREVFDQMPKKSSVSWNAMINGYMKSGKINLAR 189
            F    L   L+ C   E         A  +     K+ SV  N +I  Y K G     R
Sbjct: 152 GFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVG-NKLITSYFKCGCSVSGR 210

Query: 190 QLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLA 249
            +F  M  RN+I+  ++ISG   N    + + LF ++ +  + P+ VT LSAL+A SG  
Sbjct: 211 GVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQ 270

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIV 309
            +  G+ IH+ + K+  + +  + ++L++MYSKCGSIE A  +F++         T I+V
Sbjct: 271 RIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILV 330

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIV 369
           GL  +G  ++A++ F+ M + G++  A     VL        +  G +   ++I      
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSG 390

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN--LEIGEYAA 427
            T  + G L+++  + G L  ++ +   MP R N V W S++++   HG+    +  Y  
Sbjct: 391 NTFVNNG-LINMYSKCGDLTDSQTVFRRMPKR-NYVSWNSMIAAFARHGHGLAALKLYEE 448

Query: 428 HNLIEADPDATGCYTLLSNIYAAA--GKWDKVSHVREMMKE 466
              +E  P      T LS ++A +  G  DK   +   MKE
Sbjct: 449 MTTLEVKPTDV---TFLSLLHACSHVGLIDKGRELLNEMKE 486



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 2/232 (0%)

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
           + + V WN++++ Y K GK+  A +LF +MP R++IS N +  G+  N        L + 
Sbjct: 87  RNALVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKR 146

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +L  G    H T+   LS           + IH+  +   +D +  +G  LI  Y KCG 
Sbjct: 147 MLGSGGF-DHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGC 205

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
             S   VF  ++++ +   TA+I GL  + L +  L LF  MRR  + P+++T++  L A
Sbjct: 206 SVSGRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAA 265

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
           CS    + EG +    ++ +Y I   +     L+D+  + G ++ A  I ES
Sbjct: 266 CSGSQRIVEGQQ-IHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFES 316


>AT4G04370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:2134060-2136249 REVERSE
           LENGTH=729
          Length = 729

 Score =  265 bits (676), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 161/518 (31%), Positives = 264/518 (50%), Gaps = 11/518 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN +IS Y      ++ L L  +M    L PD  T    +     +  ++ G
Sbjct: 205 MEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMG 264

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H  ++K GF  D  ++++L+ MY K G+   + +V + + ++DVV W  +I G  R 
Sbjct: 265 RMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRL 324

Query: 121 GNVEVAMKLFDEM-PSRDAFTWTALLDGLAKC---GKVEAAREVFDQMPKK----SSVSW 172
           G  E A+ +F EM  S    +  A+   +A C   G  +    V   + +      + + 
Sbjct: 325 GRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPAL 384

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL-LKEGL 231
           N++I  Y K G ++ +  +F +M  R+L+SWN++ISGY  N    +A+ LFE +  K   
Sbjct: 385 NSLITMYAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQ 444

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
                T++S L A S    L  G+ IH  +++       ++ T+L++MYSKCG +E+A  
Sbjct: 445 QVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQR 504

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
            F +I+ K +  W  +I G G HG  D ALE++ E    GM+P+ + F+ VL++CSH G+
Sbjct: 505 CFDSISWKDVVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGM 564

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           V +G K F  M+ ++ + P  EH  C+VD+LCRA  ++ A    +    RP+  +   +L
Sbjct: 565 VQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGIIL 624

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
            + R +G  E+ +    ++IE  P   G Y  L + +AA  +WD VS     M+  G+ K
Sbjct: 625 DACRANGKTEVEDIICEDMIELKPGDAGHYVKLGHSFAAMKRWDDVSESWNQMRSLGLKK 684

Query: 472 DAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKL--REM 507
             G S +E  GK   F +   SH        KL  REM
Sbjct: 685 LPGWSKIEMNGKTTTFFMNHTSHSDDTVSLLKLLSREM 722



 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 134/389 (34%), Positives = 205/389 (52%), Gaps = 7/389 (1%)

Query: 29  FRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAK 88
           F  ML + LLPD FT P ++K C+ L  +  G  IH  VL  GF  D ++ SSLVN+YAK
Sbjct: 34  FSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVLVNGFSSDFYISSSLVNLYAK 93

Query: 89  WGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRD----AFTWTAL 144
           +G +  ARKVF++M +RDVV W ++I  Y+R G V  A  L +EM  +       T   +
Sbjct: 94  FGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEM 153

Query: 145 LDGLAKCGKVEAAREVFDQMPKKSSVS-WNAMINGYMKSGKINLARQLFGQMPGRNLISW 203
           L G+ +  +++   +          ++  N+M+N Y K   +  A+ LF QM  R+++SW
Sbjct: 154 LSGVLEITQLQCLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSW 213

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           N+MISGY   G   E ++L   +  +GL P   T  ++LS    +  L  GR +H  +VK
Sbjct: 214 NTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVK 273

Query: 264 HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALEL 323
             FD+D  L T+LI MY KCG  E++  V + I NK +  WT +I GL   G A++AL +
Sbjct: 274 TGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIV 333

Query: 324 FMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILC 383
           F EM + G    +     V+ +C+  G  D G      ++     + T      L+ +  
Sbjct: 334 FSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDT-PALNSLITMYA 392

Query: 384 RAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
           + GHL ++  I E M  R + V W +++S
Sbjct: 393 KCGHLDKSLVIFERMNER-DLVSWNAIIS 420



 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 211/432 (48%), Gaps = 14/432 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V W  +I CY       +A  L  +M    + P   TL  ++ G   +  +Q  
Sbjct: 107 MRERDVVHWTAMIGCYSRAGIVGEACSLVNEMRFQGIKPGPVTLLEMLSGVLEITQLQ-- 164

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H + +  GF  D  V +S++N+Y K   +G A+ +FD+M  RD+VSWN++I GYA  
Sbjct: 165 -CLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASV 223

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-SVSW--- 172
           GN+   +KL   M       D  T+ A L        +E  R +  Q+ K    V     
Sbjct: 224 GNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLK 283

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            A+I  Y+K GK   + ++   +P ++++ W  MISG    GR  +A+ +F  +L+ G  
Sbjct: 284 TALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSD 343

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
            S   I S +++ + L     G  +H ++++H + LD     SLI MY+KCG ++ +L +
Sbjct: 344 LSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVI 403

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR-RIGMKPHAITFIGVLNACSHKGL 351
           F+ +  + L  W AII G   +    +AL LF EM+ +   +  + T + +L ACS  G 
Sbjct: 404 FERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGA 463

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           +  G     ++I  + I P       LVD+  + G+L+ A+   +S+  + + V W  L+
Sbjct: 464 LPVGKLIHCIVIRSF-IRPCSLVDTALVDMYSKCGYLEAAQRCFDSISWK-DVVSWGILI 521

Query: 412 SSSRNHGNLEIG 423
           +    HG  +I 
Sbjct: 522 AGYGFHGKGDIA 533



 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 21/226 (9%)

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           +NS I+    +G   + +  F  +L   L+P   T  S L A + L  L  G  IH  ++
Sbjct: 14  FNSHINHLSSHGDHKQVLSTFSSMLANKLLPDTFTFPSLLKACASLQRLSFGLSIHQQVL 73

Query: 263 KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALE 322
            + F  D  + +SL+ +Y+K G +  A  VF+ +  + + HWTA+I      G+  +A  
Sbjct: 74  VNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACS 133

Query: 323 LFMEMRRIGMKPHAITFIGVLNA--------CSHKGLVDEGNKCFDMMINEYKIVPTVEH 374
           L  EMR  G+KP  +T + +L+         C H   V  G  C   ++N          
Sbjct: 134 LVNEMRFQGIKPGPVTLLEMLSGVLEITQLQCLHDFAVIYGFDCDIAVMNS--------- 184

Query: 375 YGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
              ++++ C+  H+  AK++ + M  R + V W +++S   + GN+
Sbjct: 185 ---MLNLYCKCDHVGDAKDLFDQMEQR-DMVSWNTMISGYASVGNM 226


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score =  263 bits (671), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 156/511 (30%), Positives = 268/511 (52%), Gaps = 42/511 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V+WNLIIS YV      DA+ + + M    L  D  TL  ++   +R   ++ G
Sbjct: 335 MFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTENLKLG 394

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K++  Y ++  F                               + D+V  ++++D YA+ 
Sbjct: 395 KEVQCYCIRHSF-------------------------------ESDIVLASTVMDMYAKC 423

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMI 176
           G++  A K+FD    +D   W  LL   A+ G    A  +F  M       + ++WN +I
Sbjct: 424 GSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLII 483

Query: 177 NGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
              +++G+++ A+ +F QM       NLISW +M++G   NG   EA+     + + GL 
Sbjct: 484 LSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLR 543

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIESALA 291
           P+  +I  ALSA + LA L  GR IH +++++      V + TSL++MY+KCG I  A  
Sbjct: 544 PNAFSITVALSACAHLASLHIGRTIHGYIIRNLQHSSLVSIETSLVDMYAKCGDINKAEK 603

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF +    +L    A+I    ++G   +A+ L+  +  +G+KP  IT   VL+AC+H G 
Sbjct: 604 VFGSKLYSELPLSNAMISAYALYGNLKEAIALYRSLEGVGLKPDNITITNVLSACNHAGD 663

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           +++  + F  ++++  + P +EHYG +VD+L  AG  ++A  +IE MP +P+  +  SL+
Sbjct: 664 INQAIEIFTDIVSKRSMKPCLEHYGLMVDLLASAGETEKALRLIEEMPFKPDARMIQSLV 723

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           +S       E+ +Y +  L+E++P+ +G Y  +SN YA  G WD+V  +REMMK +G+ K
Sbjct: 724 ASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKK 783

Query: 472 DAGCSIVEHRGK--LNRFIVGDKSHPQTKAI 500
             GCS ++  G+  ++ F+  DK+H +   I
Sbjct: 784 KPGCSWIQITGEEGVHVFVANDKTHTRINEI 814



 Score =  209 bits (533), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 143/473 (30%), Positives = 241/473 (50%), Gaps = 24/473 (5%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + SW  II           AL+ F +ML +++ PD F +P V K C  L   + G+ +HG
Sbjct: 138 VFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHG 197

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           YV+K G     FV SSL +MY K G +  A KVFD++ DR+ V+WN+L+ GY +NG  E 
Sbjct: 198 YVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEE 257

Query: 126 AMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAARE-----VFDQMPKKSSVSWNA 174
           A++LF +M      P+R   T +  L   A  G VE  ++     + + M +  ++   +
Sbjct: 258 AIRLFSDMRKQGVEPTR--VTVSTCLSASANMGGVEEGKQSHAIAIVNGM-ELDNILGTS 314

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           ++N Y K G I  A  +F +M  +++++WN +ISGY   G   +A+ + +++  E L   
Sbjct: 315 LLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYD 374

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
            VT+ + +SA +    L  G+ +  + ++H F+ D VL +++++MY+KCGSI  A  VF 
Sbjct: 375 CVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFD 434

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDE 354
           +   K L  W  ++      GL+ +AL LF  M+  G+ P+ IT+  ++ +    G VDE
Sbjct: 435 STVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDE 494

Query: 355 GNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLL 411
               F + +    I+P +  +  +++ + + G  ++A   +  M    +RPN       L
Sbjct: 495 AKDMF-LQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVAL 553

Query: 412 SSSRNHGNLEIGE----YAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHV 460
           S+  +  +L IG     Y   NL  +        T L ++YA  G  +K   V
Sbjct: 554 SACAHLASLHIGRTIHGYIIRNLQHS--SLVSIETSLVDMYAKCGDINKAEKV 604



 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/429 (26%), Positives = 211/429 (49%), Gaps = 16/429 (3%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           H P+  S+   +S    N    +AL L  +M   +L         +++GC     +  GK
Sbjct: 31  HSPSSTSYFHRVSSLCKNGEIKEALSLVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGK 90

Query: 62  QIHGYVLKIG--FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           QIH  +LK G  +  ++++++ LV  YAK   + +A  +F K+  R+V SW ++I    R
Sbjct: 91  QIHARILKNGDFYARNEYIETKLVIFYAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCR 150

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAK-CGKVEAAR-------EVFDQMPKKSSVS 171
            G  E A+  F EM   + F    ++  + K CG ++ +R        V     +     
Sbjct: 151 IGLCEGALMGFVEMLENEIFPDNFVVPNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFV 210

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            +++ + Y K G ++ A ++F ++P RN ++WN+++ GY  NG+  EA+ LF  + K+G+
Sbjct: 211 ASSLADMYGKCGVLDDASKVFDEIPDRNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGV 270

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P+ VT+ + LSA + +  +  G+  H+  + +  +LD +LGTSL+  Y K G IE A  
Sbjct: 271 EPTRVTVSTCLSASANMGGVEEGKQSHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEM 330

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           VF  +  K +  W  II G    GL + A+ +   MR   +K   +T   +++A +    
Sbjct: 331 VFDRMFEKDVVTWNLIISGYVQQGLVEDAIYMCQLMRLEKLKYDCVTLATLMSAAARTEN 390

Query: 352 VDEGN--KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
           +  G   +C+ +    +     +     ++D+  + G +  AK + +S  +  + ++W +
Sbjct: 391 LKLGKEVQCYCI---RHSFESDIVLASTVMDMYAKCGSIVDAKKVFDS-TVEKDLILWNT 446

Query: 410 LLSSSRNHG 418
           LL++    G
Sbjct: 447 LLAAYAESG 455


>AT4G32430.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:15652982-15655273 FORWARD
           LENGTH=763
          Length = 763

 Score =  261 bits (667), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/533 (30%), Positives = 286/533 (53%), Gaps = 22/533 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSN-DALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M    ++SWN ++S          +A+++FR M+   +  D  +   VI  C     ++ 
Sbjct: 235 MSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKL 294

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
            +QIHG  +K G+     V + L++ Y+K G +   + VF +M +R+VVSW ++I     
Sbjct: 295 ARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMI----- 349

Query: 120 NGNVEVAMKLFDEMPSRDAF----TWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           + N + A+ +F  M     +    T+  L++ +    +++   ++     K   VS    
Sbjct: 350 SSNKDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSV 409

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            N+ I  Y K   +  A++ F  +  R +ISWN+MISG+  NG   EA+++F     E  
Sbjct: 410 GNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLSAAAE-T 468

Query: 232 MPSHVTILSALSAVSGLAVLG--NGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           MP+  T  S L+A++    +    G+  H+ ++K   +   V+ ++L++MY+K G+I+ +
Sbjct: 469 MPNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKRGNIDES 528

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
             VF  ++ K    WT+II     HG  +  + LF +M +  + P  +TF+ VL AC+ K
Sbjct: 529 EKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVLTACNRK 588

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
           G+VD+G + F+MMI  Y + P+ EHY C+VD+L RAG L++A+ ++  +P  P + +  S
Sbjct: 589 GMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPGESMLQS 648

Query: 410 LLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGV 469
           +L S R HGN+++G   A   +E  P+ +G Y  + NIYA   +WDK + +R+ M+++ V
Sbjct: 649 MLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKAMRKKNV 708

Query: 470 LKDAGCS---IVEHRGKLNR--FIVGDKSHPQTKAIYAKLREMSKKLKLAGHV 517
            K+AG S   + +  G L    F  GDKSHP++  IY  +  +  ++ L G V
Sbjct: 709 SKEAGFSWIDVGDTEGSLTMQGFSSGDKSHPKSDEIYRMVEIIGLEMNLEGKV 761



 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/482 (27%), Positives = 234/482 (48%), Gaps = 37/482 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +VSWN I+S +  N     AL    +M    ++ D FT    +  C        G Q+
Sbjct: 140 PDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQL 196

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
              V+K G   D  V +S + MY++ G    AR+VFD+M  +D++SWNSL+ G ++ G  
Sbjct: 197 QSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTF 256

Query: 124 EV-AMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW----NA 174
              A+ +F +M       D  ++T+++        ++ AR++     K+   S     N 
Sbjct: 257 GFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNI 316

Query: 175 MINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPS 234
           +++ Y K G +   + +F QM  RN++SW +MIS  +      +A+ +F  +  +G+ P+
Sbjct: 317 LMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLNMRFDGVYPN 371

Query: 235 HVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK 294
            VT +  ++AV     +  G  IH   +K  F  +  +G S I +Y+K  ++E A   F+
Sbjct: 372 EVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFE 431

Query: 295 AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG--LV 352
            I  +++  W A+I G   +G + +AL++F+      M P+  TF  VLNA +      V
Sbjct: 432 DITFREIISWNAMISGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAFAEDISV 490

Query: 353 DEGNKC----FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
            +G +C      + +N   +V +      L+D+  + G++ +++ +   M  + N+ +W 
Sbjct: 491 KQGQRCHAHLLKLGLNSCPVVSSA-----LLDMYAKRGNIDESEKVFNEMSQK-NQFVWT 544

Query: 409 SLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAA--AGKWDKVSHVREMM 464
           S++S+  +HG+ E      H +I+ +  PD     T LS + A    G  DK   +  MM
Sbjct: 545 SIISAYSSHGDFETVMNLFHKMIKENVAPDLV---TFLSVLTACNRKGMVDKGYEIFNMM 601

Query: 465 KE 466
            E
Sbjct: 602 IE 603



 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 205/430 (47%), Gaps = 26/430 (6%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLP---DGFTLPCVIKGCSRLHAVQ 58
            +    S N  IS  +  +    AL +F++ L         D  TL   +K C     ++
Sbjct: 36  QRNATTSINHSISESLRRNSPARALSIFKENLQLGYFGRHMDEVTLCLALKACR--GDLK 93

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
            G QIHG+    GF     V ++++ MY K G    A  +F+ +VD DVVSWN+++ G+ 
Sbjct: 94  RGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFD 153

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTW-TALLDGLAKCG---KVEAAREVFDQMPKKSSV 170
            N   ++A+     M S     DAFT+ TAL   +   G    ++    V     +   V
Sbjct: 154 DN---QIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLV 210

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRF-LEAMELFEVLLKE 229
             N+ I  Y +SG    AR++F +M  +++ISWNS++SG    G F  EA+ +F  +++E
Sbjct: 211 VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMRE 270

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           G+   HV+  S ++       L   R IH   +K  ++    +G  L+  YSKCG +E+ 
Sbjct: 271 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 330

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
            +VF  ++ + +  WT +I         D A+ +F+ MR  G+ P+ +TF+G++NA    
Sbjct: 331 KSVFHQMSERNVVSWTTMI-----SSNKDDAVSIFLNMRFDGVYPNEVTFVGLINAVKCN 385

Query: 350 GLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
             + EG K   + I   +   P+V +    + +  +   L+ AK   E +  R   + W 
Sbjct: 386 EQIKEGLKIHGLCIKTGFVSEPSVGN--SFITLYAKFEALEDAKKAFEDITFRE-IISWN 442

Query: 409 SLLSSSRNHG 418
           +++S    +G
Sbjct: 443 AMISGFAQNG 452


>AT2G46050.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:18939262-18941034 FORWARD
           LENGTH=590
          Length = 590

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 159/490 (32%), Positives = 259/490 (52%), Gaps = 27/490 (5%)

Query: 6   LVSWNLIISCYVH-----NHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +V+WN++I   +      NHR++       ++L  D+  D  +   +I+ C+    ++ G
Sbjct: 102 IVTWNILIHGVIQRDGDTNHRAHLGFCYLSRILFTDVSLDHVSFMGLIRLCTDSTNMKAG 161

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+H  ++K G     F  +SLV+ Y K G +  AR+VF+ ++DRD+V WN+L+  Y  N
Sbjct: 162 IQLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLN 221

Query: 121 GNVEVAMKLFDEMPSR------DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-- 172
           G ++ A  L   M S       D FT+++LL       ++E  +++   + K   VS+  
Sbjct: 222 GMIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSAC----RIEQGKQIHAILFK---VSYQF 274

Query: 173 -----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
                 A++N Y KS  ++ AR+ F  M  RN++SWN+MI G+  NG   EAM LF  +L
Sbjct: 275 DIPVATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQML 334

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
            E L P  +T  S LS+ +  + +   + + + + K        +  SLI  YS+ G++ 
Sbjct: 335 LENLQPDELTFASVLSSCAKFSAIWEIKQVQAMVTKKGSADFLSVANSLISSYSRNGNLS 394

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
            AL  F +I    L  WT++I  L  HG A+++L++F  M +  ++P  ITF+ VL+ACS
Sbjct: 395 EALLCFHSIREPDLVSWTSVIGALASHGFAEESLQMFESMLQ-KLQPDKITFLEVLSACS 453

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
           H GLV EG +CF  M   YKI    EHY CL+D+L RAG + +A +++ SMP  P+    
Sbjct: 454 HGGLVQEGLRCFKRMTEFYKIEAEDEHYTCLIDLLGRAGFIDEASDVLNSMPTEPSTHAL 513

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKER 467
            +       H   E  ++ A  L+E +P     Y++LSN Y + G W++ + +R+  +  
Sbjct: 514 AAFTGGCNIHEKRESMKWGAKKLLEIEPTKPVNYSILSNAYVSEGHWNQAALLRKRERRN 573

Query: 468 GV-LKDAGCS 476
               K  GCS
Sbjct: 574 CYNPKTPGCS 583



 Score =  132 bits (332), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 189/389 (48%), Gaps = 23/389 (5%)

Query: 49  KGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVV 108
           K  + L  + + KQ HG+++K G     F+Q+ L+  Y K  E   A K+FD+M  R++V
Sbjct: 44  KLSASLDHLSDVKQEHGFMVKQGIYNSLFLQNKLLQAYTKIREFDDADKLFDEMPLRNIV 103

Query: 109 SWNSLIDGY-ARNGNVE---------VAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAR 158
           +WN LI G   R+G+           ++  LF ++ S D  ++  L+        ++A  
Sbjct: 104 TWNILIHGVIQRDGDTNHRAHLGFCYLSRILFTDV-SLDHVSFMGLIRLCTDSTNMKAGI 162

Query: 159 EVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
           ++   M K+    S     ++++ Y K G I  AR++F  +  R+L+ WN+++S Y LNG
Sbjct: 163 QLHCLMVKQGLESSCFPSTSLVHFYGKCGLIVEARRVFEAVLDRDLVLWNALVSSYVLNG 222

Query: 215 RFLEAMELFEVL--LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVL 272
              EA  L +++   K      + T  S LSA      +  G+ IH+ + K  +  D  +
Sbjct: 223 MIDEAFGLLKLMGSDKNRFRGDYFTFSSLLSACR----IEQGKQIHAILFKVSYQFDIPV 278

Query: 273 GTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
            T+L+ MY+K   +  A   F+++  + +  W A+IVG   +G   +A+ LF +M    +
Sbjct: 279 ATALLNMYAKSNHLSDARECFESMVVRNVVSWNAMIVGFAQNGEGREAMRLFGQMLLENL 338

Query: 333 KPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAK 392
           +P  +TF  VL++C+    + E  K    M+ +      +     L+    R G+L +A 
Sbjct: 339 QPDELTFASVLSSCAKFSAIWE-IKQVQAMVTKKGSADFLSVANSLISSYSRNGNLSEAL 397

Query: 393 NIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
               S+   P+ V W S++ +  +HG  E
Sbjct: 398 LCFHSI-REPDLVSWTSVIGALASHGFAE 425


>AT1G03540.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:883782-885611 FORWARD
           LENGTH=609
          Length = 609

 Score =  260 bits (665), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 152/484 (31%), Positives = 262/484 (54%), Gaps = 16/484 (3%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           +SW  ++S YV       AL +F +M+   L  + FTL   +K CS L  V+ G+  HG 
Sbjct: 129 ISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGV 188

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           V+  GF ++ F+ S+L  +Y    E   AR+VFD+M + DV+ W +++  +++N   E A
Sbjct: 189 VITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEA 248

Query: 127 MKLFDEMPS-----RDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMIN 177
           + LF  M        D  T+  +L       +++  +E+  ++       + V  +++++
Sbjct: 249 LGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLD 308

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K G +  ARQ+F  M  +N +SW++++ GY  NG   +A+E+F  + ++ L      
Sbjct: 309 MYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDLY----C 364

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
             + L A +GLA +  G+ IH   V+  CF  + ++ ++LI++Y K G I+SA  V+  +
Sbjct: 365 FGTVLKACAGLAAVRLGKEIHGQYVRRGCFG-NVIVESALIDLYGKSGCIDSASRVYSKM 423

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
           + + +  W A++  L  +G  ++A+  F +M + G+KP  I+FI +L AC H G+VDEG 
Sbjct: 424 SIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGR 483

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS-SR 415
             F +M   Y I P  EHY C++D+L RAG  ++A+N++E    R +  +W  LL   + 
Sbjct: 484 NYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAA 543

Query: 416 NHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
           N     + E  A  ++E +P     Y LLSN+Y A G+     ++R++M  RGV K  G 
Sbjct: 544 NADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQ 603

Query: 476 SIVE 479
           S ++
Sbjct: 604 SWID 607



 Score =  149 bits (377), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 195/395 (49%), Gaps = 36/395 (9%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGE-MGLARKVFDKMVDR 105
           +++ C+++ +   G Q H +V+K G   D+ V +SL+++Y K G  M   R+VFD    +
Sbjct: 67  LLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVK 126

Query: 106 DVVSWNSLIDGYARNGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVF 161
           D +SW S++ GY        A+++F EM S     + FT ++ +   ++ G+V   R  F
Sbjct: 127 DAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGR-CF 185

Query: 162 DQMPKKSSVSWNAMING-----YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRF 216
             +       WN  I+      Y  + +   AR++F +MP  ++I W +++S +  N  +
Sbjct: 186 HGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLY 245

Query: 217 LEAMELFEVLLK-EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS 275
            EA+ LF  + + +GL+P   T  + L+A   L  L  G+ IH  ++ +    + V+ +S
Sbjct: 246 EEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESS 305

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           L++MY KCGS+  A  VF  ++ K    W+A++ G   +G  ++A+E+F EM     +  
Sbjct: 306 LLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREME----EKD 361

Query: 336 AITFIGVLNACSHKGLVDEGNK---------CFDMMINEYKIVPTVEHYGCLVDILCRAG 386
              F  VL AC+    V  G +         CF  +I E            L+D+  ++G
Sbjct: 362 LYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVE----------SALIDLYGKSG 411

Query: 387 HLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
            +  A  +   M +R N + W ++LS+   +G  E
Sbjct: 412 CIDSASRVYSKMSIR-NMITWNAMLSALAQNGRGE 445



 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M K   VSW+ ++  Y  N     A+ +FR+M   DL    +    V+K C+ L AV+ G
Sbjct: 326 MSKKNSVSWSALLGGYCQNGEHEKAIEIFREMEEKDL----YCFGTVLKACAGLAAVRLG 381

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K+IHG  ++ G   +  V+S+L+++Y K G +  A +V+ KM  R++++WN+++   A+N
Sbjct: 382 KEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQN 441

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----- 171
           G  E A+  F++M  +    D  ++ A+L      G V+  R  F  M K   +      
Sbjct: 442 GRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEH 501

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRN 199
           ++ MI+   ++G    A  L  +   RN
Sbjct: 502 YSCMIDLLGRAGLFEEAENLLERAECRN 529


>AT5G61800.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24830054-24831553 REVERSE
           LENGTH=499
          Length = 499

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/347 (38%), Positives = 209/347 (60%), Gaps = 5/347 (1%)

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMP 196
           D FT   L+   +    +++A ++FD+ P++  V++N +I+G +K+ +I  AR+LF  MP
Sbjct: 151 DLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMP 210

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRW 256
            R+L+SWNS+ISGY       EA++LF+ ++  GL P +V I+S LSA +       G+ 
Sbjct: 211 LRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKA 270

Query: 257 IHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGL 316
           IH +  +    +D  L T L++ Y+KCG I++A+ +F+  ++K L  W A+I GL MHG 
Sbjct: 271 IHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGN 330

Query: 317 ADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYG 376
            +  ++ F +M   G+KP  +TFI VL  CSH GLVDE    FD M + Y +   ++HYG
Sbjct: 331 GELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYG 390

Query: 377 CLVDILCRAGHLQQAKNIIESMPM----RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE 432
           C+ D+L RAG +++A  +IE MP     R   + W  LL   R HGN+EI E AA+ +  
Sbjct: 391 CMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHGNIEIAEKAANRVKA 450

Query: 433 ADPDATGCYTLLSNIYAAAGKWDKVSHVREMM-KERGVLKDAGCSIV 478
             P+  G Y ++  +YA A +W++V  VRE++ +++ V K+ G S V
Sbjct: 451 LSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDKKVKKNVGFSKV 497



 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 174/377 (46%), Gaps = 33/377 (8%)

Query: 4   PTLVSWNLIIS-CYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG-- 60
           P+   +N II  C +H   S  +   F +M    + PD  T P V K C+   A + G  
Sbjct: 77  PSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFPFVFKACA---AKKNGDL 133

Query: 61  ---KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
              K +H   L+ G   D F  ++L+ +Y+    +  A ++FD+   RDVV++N LIDG 
Sbjct: 134 TLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYNVLIDGL 193

Query: 118 ARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWN 173
            +   +  A +LFD MP RD  +W +L+ G A+      A ++FD+M     K  +V+  
Sbjct: 194 VKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIV 253

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISG----YQLNGRFLEAMELFEVLLKE 229
           + ++   +SG     + +      + L   + + +G    Y   G    AME+FE     
Sbjct: 254 STLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIFE----- 308

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSF---MVKHCFDLDGVLGTSLIEMYSKCGSI 286
             + S  T+ +  + ++GLA+ GNG     +   MV      DGV   S++   S  G +
Sbjct: 309 --LCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLV 366

Query: 287 ESALAVFKAI-----ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI-GMKPHAITFI 340
           + A  +F  +      N+++ H+  +   LG  GL ++A E+  +M +  G +   + + 
Sbjct: 367 DEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWS 426

Query: 341 GVLNACSHKGLVDEGNK 357
           G+L  C   G ++   K
Sbjct: 427 GLLGGCRIHGNIEIAEK 443


>AT1G26900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:9319756-9321474 REVERSE
           LENGTH=572
          Length = 572

 Score =  256 bits (653), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 161/486 (33%), Positives = 258/486 (53%), Gaps = 17/486 (3%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L  +N +I  Y  +     A  +F Q+    L  D F+    +K CSR   V  G+ +HG
Sbjct: 90  LFMFNTMIRGYSISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHG 149

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVSWNSLIDGYARNGNVE 124
             L+ GF     ++++L++ Y   G++  ARKVFD+M    D V++++L++GY +     
Sbjct: 150 IALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKA 209

Query: 125 VAMKLFDEMPSRDAF----TWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AM 175
           +A+ LF  M   +      T  + L  ++  G +  A E    +  K  +  +     A+
Sbjct: 210 LALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGA-ESAHVLCIKIGLDLDLHLITAL 268

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           I  Y K+G I+ AR++F     +++++WN MI  Y   G   E + L   +  E + P+ 
Sbjct: 269 IGMYGKTGGISSARRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNS 328

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T +  LS+ +       GR +   + +    LD +LGT+L++MY+K G +E A+ +F  
Sbjct: 329 STFVGLLSSCAYSEAAFVGRTVADLLEEERIALDAILGTALVDMYAKVGLLEKAVEIFNR 388

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELF--MEMRRIGMKPHAITFIGVLNACSHKGLVD 353
           + +K +  WTA+I G G HGLA +A+ LF  ME     ++P+ ITF+ VLNACSH GLV 
Sbjct: 389 MKDKDVKSWTAMISGYGAHGLAREAVTLFNKMEEENCKVRPNEITFLVVLNACSHGGLVM 448

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
           EG +CF  M+  Y   P VEHYGC+VD+L RAG L++A  +I ++P+  +   W +LL++
Sbjct: 449 EGIRCFKRMVEAYSFTPKVEHYGCVVDLLGRAGQLEEAYELIRNLPITSDSTAWRALLAA 508

Query: 414 SRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
            R +GN ++GE     L E          LL+  +A AG  +K S   E+ K R   K+A
Sbjct: 509 CRVYGNADLGESVMMRLAEMGETHPADAILLAGTHAVAGNPEK-SLDNELNKGR---KEA 564

Query: 474 GCSIVE 479
           G S +E
Sbjct: 565 GYSAIE 570



 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 187/369 (50%), Gaps = 12/369 (3%)

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           E  +IHGY++K G   D F  S L+  ++   ++  A  +F+ + + ++  +N++I GY+
Sbjct: 43  EVSRIHGYMVKTGLDKDDFAVSKLL-AFSSVLDIRYASSIFEHVSNTNLFMFNTMIRGYS 101

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-- 172
            +   E A  +F+++ ++    D F++   L   ++   V     +     +   + +  
Sbjct: 102 ISDEPERAFSVFNQLRAKGLTLDRFSFITTLKSCSRELCVSIGEGLHGIALRSGFMVFTD 161

Query: 173 --NAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
             NA+I+ Y   GKI+ AR++F +MP   + ++++++++GY    +   A++LF ++ K 
Sbjct: 162 LRNALIHFYCVCGKISDARKVFDEMPQSVDAVTFSTLMNGYLQVSKKALALDLFRIMRKS 221

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
            ++ +  T+LS LSA+S L  L      H   +K   DLD  L T+LI MY K G I SA
Sbjct: 222 EVVVNVSTLLSFLSAISDLGDLSGAESAHVLCIKIGLDLDLHLITALIGMYGKTGGISSA 281

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
             +F     K +  W  +I      GL ++ + L  +M+   MKP++ TF+G+L++C++ 
Sbjct: 282 RRIFDCAIRKDVVTWNCMIDQYAKTGLLEECVWLLRQMKYEKMKPNSSTFVGLLSSCAYS 341

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
                G    D++  E +I         LVD+  + G L++A  I   M  +  K  W +
Sbjct: 342 EAAFVGRTVADLL-EEERIALDAILGTALVDMYAKVGLLEKAVEIFNRMKDKDVKS-WTA 399

Query: 410 LLSSSRNHG 418
           ++S    HG
Sbjct: 400 MISGYGAHG 408



 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 125/326 (38%), Gaps = 47/326 (14%)

Query: 185 INLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSA 244
           I  A  +F  +   NL  +N+MI GY ++     A  +F  L  +GL     + ++ L +
Sbjct: 75  IRYASSIFEHVSNTNLFMFNTMIRGYSISDEPERAFSVFNQLRAKGLTLDRFSFITTLKS 134

Query: 245 VSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK-KLGH 303
            S    +  G  +H   ++  F +   L  +LI  Y  CG I  A  VF  +        
Sbjct: 135 CSRELCVSIGEGLHGIALRSGFMVFTDLRNALIHFYCVCGKISDARKVFDEMPQSVDAVT 194

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS---------------- 347
           ++ ++ G         AL+LF  MR+  +  +  T +  L+A S                
Sbjct: 195 FSTLMNGYLQVSKKALALDLFRIMRKSEVVVNVSTLLSFLSAISDLGDLSGAESAHVLCI 254

Query: 348 -------------------HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHL 388
                                G +    + FD  I +      V  + C++D   + G L
Sbjct: 255 KIGLDLDLHLITALIGMYGKTGGISSARRIFDCAIRK-----DVVTWNCMIDQYAKTGLL 309

Query: 389 QQAKNIIESM---PMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCY--TL 443
           ++   ++  M    M+PN   ++ LLSS        +G   A +L+E +  A      T 
Sbjct: 310 EECVWLLRQMKYEKMKPNSSTFVGLLSSCAYSEAAFVGRTVA-DLLEEERIALDAILGTA 368

Query: 444 LSNIYAAAGKWDKVSHVREMMKERGV 469
           L ++YA  G  +K   +   MK++ V
Sbjct: 369 LVDMYAKVGLLEKAVEIFNRMKDKDV 394


>AT3G50420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18710871-18713649 REVERSE
           LENGTH=794
          Length = 794

 Score =  255 bits (652), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/501 (30%), Positives = 265/501 (52%), Gaps = 12/501 (2%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           V+WN +I   + N +  D L+ FR ML   + P  FT   V+ GCS+L +   GK IH  
Sbjct: 266 VAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHAR 325

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           ++      D  + ++L++MY   G+M  A  VF ++ + ++VSWNS+I G + NG  E A
Sbjct: 326 IIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQA 385

Query: 127 MKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMIN 177
           M ++  +     P  D +T++A +   A+  +    + +  Q+ K    +S      +++
Sbjct: 386 MLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLS 445

Query: 178 GYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
            Y K+ +   A+++F  M  R+++ W  MI G+   G    A++ F  + +E       +
Sbjct: 446 MYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFS 505

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
           + S + A S +A+L  G   H   ++  FD    +  +L++MY K G  E+A  +F   +
Sbjct: 506 LSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLAS 565

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           N  L  W +++     HG+ ++AL  F ++   G  P A+T++ +L ACSH+G   +G  
Sbjct: 566 NPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKF 625

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV-IWMSLLSSSRN 416
            ++ M  E  I    +HY C+V+++ +AG + +A  +IE  P   N+  +W +LLS+  N
Sbjct: 626 LWNQM-KEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELWRTLLSACVN 684

Query: 417 HGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
             NL+IG YAA  +++ DP+ T  + LLSN+YA  G+W+ V+ +R  ++     KD G S
Sbjct: 685 TRNLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGLASSKDPGLS 744

Query: 477 IVE-HRGKLNRFIVGDKSHPQ 496
            +E +      F  GD+S+P+
Sbjct: 745 WIEVNNNNTQVFSSGDQSNPE 765



 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 133/484 (27%), Positives = 241/484 (49%), Gaps = 21/484 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHR-SNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           M    +VS+N + S Y  N   ++ A  L   M    + P+  T   +++ C+ L  V  
Sbjct: 158 MPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVLM 217

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G  ++  ++K+G+  +  VQ+S++ MY+  G++  AR++FD + +RD V+WN++I G  +
Sbjct: 218 GSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLK 277

Query: 120 NGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-- 171
           N  +E  +  F  M      P++  FT++ +L+G +K G     + +  ++    S++  
Sbjct: 278 NDKIEDGLMFFRNMLMSGVDPTQ--FTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADL 335

Query: 172 --WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
              NA+++ Y   G +  A  +FG++   NL+SWNS+ISG   NG   +AM ++  LL+ 
Sbjct: 336 PLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRM 395

Query: 230 GL-MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
               P   T  +A+SA +      +G+ +H  + K  ++    +GT+L+ MY K    ES
Sbjct: 396 STPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAES 455

Query: 289 ALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
           A  VF  +  + +  WT +IVG    G ++ A++ F+EM R   +    +   V+ ACS 
Sbjct: 456 AQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSD 515

Query: 349 KGLVDEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIW 407
             ++ +G     + I   +  V +V   G LVD+  + G  + A+ I  S+   P+   W
Sbjct: 516 MAMLRQGEVFHCLAIRTGFDCVMSV--CGALVDMYGKNGKYETAETIF-SLASNPDLKCW 572

Query: 408 MSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
            S+L +   HG +E        ++E    PDA    +LL+   +  G   +   +   MK
Sbjct: 573 NSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAAC-SHRGSTLQGKFLWNQMK 631

Query: 466 ERGV 469
           E+G+
Sbjct: 632 EQGI 635



 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 154/306 (50%), Gaps = 15/306 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQE 59
           +H P LVSWN IIS    N     A+L++R++L      PD +T    I   +       
Sbjct: 361 IHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVH 420

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GK +HG V K+G+    FV ++L++MY K  E   A+KVFD M +RDVV W  +I G++R
Sbjct: 421 GKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSR 480

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAR--EVFDQMPKKSSVS-- 171
            GN E+A++ F EM       D F+ +++   +  C  +   R  EVF  +  ++     
Sbjct: 481 LGNSELAVQFFIEMYREKNRSDGFSLSSV---IGACSDMAMLRQGEVFHCLAIRTGFDCV 537

Query: 172 ---WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
                A+++ Y K+GK   A  +F      +L  WNSM+  Y  +G   +A+  FE +L+
Sbjct: 538 MSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILE 597

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
            G MP  VT LS L+A S       G+++ + M +          + ++ + SK G ++ 
Sbjct: 598 NGFMPDAVTYLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFKHYSCMVNLVSKAGLVDE 657

Query: 289 ALAVFK 294
           AL + +
Sbjct: 658 ALELIE 663



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 179/390 (45%), Gaps = 15/390 (3%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGF---DKFVQSSLVNMYAKWGEMGLARKVFDKMV 103
           + + C  +  ++  +QIH  VL  G G      +  ++L++MY + G +  ARKVFDKM 
Sbjct: 100 LTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFDKMP 159

Query: 104 DRDVVSWNSLIDGYARNGN-VEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAR 158
            R+VVS+N+L   Y+RN +    A  L   M       ++ T+T+L+   A    V    
Sbjct: 160 HRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVLMGS 219

Query: 159 EVFDQMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
            +  Q+ K     + V   +++  Y   G +  AR++F  +  R+ ++WN+MI G   N 
Sbjct: 220 SLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKND 279

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
           +  + +  F  +L  G+ P+  T    L+  S L     G+ IH+ ++      D  L  
Sbjct: 280 KIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDN 339

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM-K 333
           +L++MY  CG +  A  VF  I N  L  W +II G   +G  +QA+ ++  + R+   +
Sbjct: 340 ALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPR 399

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKN 393
           P   TF   ++A +       G K     + +     +V     L+ +  +    + A+ 
Sbjct: 400 PDEYTFSAAISATAEPERFVHG-KLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQK 458

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
           + + M  R + V+W  ++      GN E+ 
Sbjct: 459 VFDVMKER-DVVLWTEMIVGHSRLGNSELA 487



 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 131/272 (48%), Gaps = 28/272 (10%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +V W  +I  +     S  A+  F +M       DGF+L  VI  CS +  +++G
Sbjct: 463 MKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQG 522

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +  H   ++ GF     V  +LV+MY K G+   A  +F    + D+  WNS++  Y+++
Sbjct: 523 EVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQH 582

Query: 121 GNVEVAMKLFDE------MPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS--- 171
           G VE A+  F++      MP  DA T+ +LL   +  G     + +++QM ++   +   
Sbjct: 583 GMVEKALSFFEQILENGFMP--DAVTYLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFK 640

Query: 172 -WNAMINGYMKSGKINLARQLFGQM-PGRNLIS-WNSMISGYQLNGRFLE-AMELFEVLL 227
            ++ M+N   K+G ++ A +L  Q  PG N    W +++S   +N R L+  +   E +L
Sbjct: 641 HYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELWRTLLSAC-VNTRNLQIGLYAAEQIL 699

Query: 228 KEGLMPSHVT---ILSALSAVSGLAVLGNGRW 256
           K  L P       +LS L AV       NGRW
Sbjct: 700 K--LDPEDTATHILLSNLYAV-------NGRW 722



 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/303 (20%), Positives = 132/303 (43%), Gaps = 17/303 (5%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLIS-------WNSMISGYQLNGRFLEAMELFEV 225
           N +I+ Y++   +  AR++F +MP RN+++       +  +  G  L+ + ++ +  F++
Sbjct: 26  NNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIK-LGSFQM 84

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKH---CFDLDGVLGTSLIEMYSK 282
           +    L     +++        + VL   R IH+ ++               +LI MY +
Sbjct: 85  IFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVR 144

Query: 283 CGSIESALAVFKAIANKKLGHWTAIIVGLGMH-GLADQALELFMEMRRIGMKPHAITFIG 341
           CGS+E A  VF  + ++ +  + A+      +   A  A  L   M    +KP++ TF  
Sbjct: 145 CGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTS 204

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
           ++  C+    V  G+   +  I +      V     ++ +    G L+ A+ I + +  R
Sbjct: 205 LVQVCAVLEDVLMGSS-LNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNR 263

Query: 402 PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG-CYTLLSNIYAAAGKWD--KVS 458
            + V W +++  S  +  +E G     N++ +  D T   Y+++ N  +  G +   K+ 
Sbjct: 264 -DAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLI 322

Query: 459 HVR 461
           H R
Sbjct: 323 HAR 325


>AT1G09190.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2966263-2967717 REVERSE
           LENGTH=484
          Length = 484

 Score =  254 bits (648), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/458 (30%), Positives = 240/458 (52%), Gaps = 41/458 (8%)

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           +IH ++L+        + +  +++         A +VF  + + +V+ +N++I  Y+  G
Sbjct: 22  EIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHIQNPNVLVFNAMIKCYSLVG 81

Query: 122 NVEVAMKLFDEMPSR----DAFTWTALLDG--------LAKC------------------ 151
               ++  F  M SR    D +T+  LL            KC                  
Sbjct: 82  PPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRI 141

Query: 152 ---------GKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
                    G++  A++VFD+M +++ V WN MI G+  SG +     LF QM  R+++S
Sbjct: 142 GVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVS 201

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           WNSMIS     GR  EA+ELF  ++ +G  P   T+++ L   + L VL  G+WIHS   
Sbjct: 202 WNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWIHSTAE 261

Query: 263 KHCFDLDGV-LGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQAL 321
                 D + +G +L++ Y K G +E+A A+F+ +  + +  W  +I G  ++G  +  +
Sbjct: 262 SSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGKGEFGI 321

Query: 322 ELFMEMRRIG-MKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVD 380
           +LF  M   G + P+  TF+GVL  CS+ G V+ G + F +M+  +K+    EHYG +VD
Sbjct: 322 DLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVD 381

Query: 381 ILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGC 440
           ++ R+G + +A   +++MP+  N  +W SLLS+ R+HG++++ E AA  L++ +P  +G 
Sbjct: 382 LMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVKLAEVAAMELVKIEPGNSGN 441

Query: 441 YTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
           Y LLSN+YA  G+W  V  VR +MK+  + K  G S +
Sbjct: 442 YVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479



 Score =  157 bits (398), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 182/374 (48%), Gaps = 45/374 (12%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           +  P ++ +N +I CY       ++L  F  M    +  D +T   ++K CS L  ++ G
Sbjct: 62  IQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFG 121

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K +HG +++ GF     ++  +V +Y   G MG A+KVFD+M +R+VV WN +I G+  +
Sbjct: 122 KCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDS 181

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSV---- 170
           G+VE  + LF +M  R   +W +++  L+KCG+   A E+F +M      P +++V    
Sbjct: 182 GDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVL 241

Query: 171 ------------SW------------------NAMINGYMKSGKINLARQLFGQMPGRNL 200
                        W                  NA+++ Y KSG +  A  +F +M  RN+
Sbjct: 242 PISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNV 301

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHS 259
           +SWN++ISG  +NG+    ++LF+ +++EG + P+  T L  L+  S    +  G  +  
Sbjct: 302 VSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFG 361

Query: 260 FMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAI-ANKKLGHWTAIIVGLGMHGL 316
            M++  F L+       +++++ S+ G I  A    K +  N     W +++     HG 
Sbjct: 362 LMMER-FKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGD 420

Query: 317 ADQALELFMEMRRI 330
              A    ME+ +I
Sbjct: 421 VKLAEVAAMELVKI 434



 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 38/332 (11%)

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV 245
           + A ++F  +   N++ +N+MI  Y L G  LE++  F  +   G+     T    L + 
Sbjct: 53  DYANRVFSHIQNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSC 112

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK----------------------- 282
           S L+ L  G+ +H  +++  F   G +   ++E+Y+                        
Sbjct: 113 SSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWN 172

Query: 283 --------CGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
                    G +E  L +FK ++ + +  W ++I  L   G   +ALELF EM   G  P
Sbjct: 173 LMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDP 232

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
              T + VL   +  G++D G        +       +     LVD  C++G L+ A  I
Sbjct: 233 DEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAI 292

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAA--G 452
              M  R N V W +L+S S  +G  E G      +IE    A    T L  +   +  G
Sbjct: 293 FRKM-QRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTG 351

Query: 453 KWDKVSHVREMMKERGVLKDAGCSIVEHRGKL 484
           + ++   +  +M ER  L+    +  EH G +
Sbjct: 352 QVERGEELFGLMMERFKLE----ARTEHYGAM 379


>AT5G66500.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:26548076-26549674 REVERSE
           LENGTH=532
          Length = 532

 Score =  251 bits (642), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 158/472 (33%), Positives = 260/472 (55%), Gaps = 24/472 (5%)

Query: 23  NDALLLFRQMLHHDLLPD--GFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQS 80
           ND L LF Q+  H   PD    T   V+  CS L   + G+Q+H  ++K G       ++
Sbjct: 66  NDTLALFLQI--HRASPDLSSHTFTPVLGACSLLSYPETGRQVHALMIKQGAETGTISKT 123

Query: 81  SLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR---- 136
           +L++MY+K+G +  + +VF+ + ++D+VSWN+L+ G+ RNG  + A+ +F  M       
Sbjct: 124 ALIDMYSKYGHLVDSVRVFESVEEKDLVSWNALLSGFLRNGKGKEALGVFAAMYRERVEI 183

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMP---KKSSVSWNAMINGYMKSGKINLARQLFG 193
             FT ++++   A    ++  ++V   +    +   V   AMI+ Y   G IN A +++ 
Sbjct: 184 SEFTLSSVVKTCASLKILQQGKQVHAMVVVTGRDLVVLGTAMISFYSSVGLINEAMKVYN 243

Query: 194 QMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG 252
            +    + +  NS+ISG   N  + EA      LL     P+   + S+L+  S  + L 
Sbjct: 244 SLNVHTDEVMLNSLISGCIRNRNYKEAF-----LLMSRQRPNVRVLSSSLAGCSDNSDLW 298

Query: 253 NGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLG 312
            G+ IH   +++ F  D  L   L++MY KCG I  A  +F+AI +K +  WT++I    
Sbjct: 299 IGKQIHCVALRNGFVSDSKLCNGLMDMYGKCGQIVQARTIFRAIPSKSVVSWTSMIDAYA 358

Query: 313 MHGLADQALELFMEM--RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
           ++G   +ALE+F EM     G+ P+++TF+ V++AC+H GLV EG +CF MM  +Y++VP
Sbjct: 359 VNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKECFGMMKEKYRLVP 418

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK----VIWMSLLSSSRNHGNLEIGEYA 426
             EHY C +DIL +AG  ++   ++E M    N+     IW+++LS+   + +L  GEY 
Sbjct: 419 GTEHYVCFIDILSKAGETEEIWRLVERMMENDNQSIPCAIWVAVLSACSLNMDLTRGEYV 478

Query: 427 AHNLI-EADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           A  L+ E  P+    Y L+SN YAA GKWD V  +R  +K +G++K AG S+
Sbjct: 479 ARRLMEETGPENASIYVLVSNFYAAMGKWDVVEELRGKLKNKGLVKTAGHSL 530



 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 163/335 (48%), Gaps = 19/335 (5%)

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAK 150
           A  +FD++  RD+ S NS +  + R+GN    + LF ++    P   + T+T +L   + 
Sbjct: 37  ADHLFDELPQRDLSSLNSQLSSHLRSGNPNDTLALFLQIHRASPDLSSHTFTPVLGACSL 96

Query: 151 CGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSM 206
               E  R+V   M K+     ++S  A+I+ Y K G +  + ++F  +  ++L+SWN++
Sbjct: 97  LSYPETGRQVHALMIKQGAETGTISKTALIDMYSKYGHLVDSVRVFESVEEKDLVSWNAL 156

Query: 207 ISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF 266
           +SG+  NG+  EA+ +F  + +E +  S  T+ S +   + L +L  G+ +H+ +V    
Sbjct: 157 LSGFLRNGKGKEALGVFAAMYRERVEISEFTLSSVVKTCASLKILQQGKQVHAMVVVTGR 216

Query: 267 DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA--LELF 324
           DL  VLGT++I  YS  G I  A+ V+ ++      H   +++   + G        E F
Sbjct: 217 DLV-VLGTAMISFYSSVGLINEAMKVYNSLNV----HTDEVMLNSLISGCIRNRNYKEAF 271

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
           + M R   +P+       L  CS    +  G +   + +     V   +    L+D+  +
Sbjct: 272 LLMSR--QRPNVRVLSSSLAGCSDNSDLWIGKQIHCVALRN-GFVSDSKLCNGLMDMYGK 328

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
            G + QA+ I  ++P + + V W S++ +   +G+
Sbjct: 329 CGQIVQARTIFRAIPSK-SVVSWTSMIDAYAVNGD 362



 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 16/180 (8%)

Query: 5   TLVSWNLIISCYVHNHRSNDALLLFRQMLHH--DLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           ++VSW  +I  Y  N     AL +FR+M      +LP+  T   VI  C+    V+EGK+
Sbjct: 346 SVVSWTSMIDAYAVNGDGVKALEIFREMCEEGSGVLPNSVTFLVVISACAHAGLVKEGKE 405

Query: 63  IHGYV---LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVS-----WNSLI 114
             G +    ++  G + +V    +++ +K GE     ++ ++M++ D  S     W +++
Sbjct: 406 CFGMMKEKYRLVPGTEHYV--CFIDILSKAGETEEIWRLVERMMENDNQSIPCAIWVAVL 463

Query: 115 DGYARNGNVE----VAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV 170
              + N ++     VA +L +E    +A  +  + +  A  GK +   E+  ++  K  V
Sbjct: 464 SACSLNMDLTRGEYVARRLMEETGPENASIYVLVSNFYAAMGKWDVVEELRGKLKNKGLV 523


>AT2G02750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:771641-773482 REVERSE
           LENGTH=613
          Length = 613

 Score =  251 bits (640), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/524 (31%), Positives = 272/524 (51%), Gaps = 51/524 (9%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  + S N  +S  + N    DA  +F          +  T+  V+ GC     ++ G
Sbjct: 92  MPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGD---IEGG 148

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+H   +K GF  + +V +SLV+MY++ GE  LA ++F+K+  + VV++N+ I G   N
Sbjct: 149 MQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLMEN 208

Query: 121 GNVEVAMKLFD-------EMPSRDAFT--------------------------------- 140
           G + +   +F+       E P+   F                                  
Sbjct: 209 GVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETMV 268

Query: 141 WTALLDGLAKCGKVEAAREVFDQMP-KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRN 199
            TAL+D  +KC   ++A  VF ++   ++ +SWN++I+G M +G+   A +LF ++    
Sbjct: 269 GTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSEG 328

Query: 200 L----ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
           L     +WNS+ISG+   G+ +EA + FE +L   ++PS   + S LSA S +  L NG+
Sbjct: 329 LKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWTLKNGK 388

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG--HWTAIIVGLGM 313
            IH  ++K   + D  + TSLI+MY KCG    A  +F     K      W  +I G G 
Sbjct: 389 EIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMISGYGK 448

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE 373
           HG  + A+E+F  +R   ++P   TF  VL+ACSH G V++G++ F +M  EY   P+ E
Sbjct: 449 HGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGYKPSTE 508

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
           H GC++D+L R+G L++AK +I+ M    + V   SLL S R H +  +GE AA  L E 
Sbjct: 509 HIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAMKLAEL 567

Query: 434 DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           +P+    + +LS+IYAA  +W+ V  +R+++ ++ ++K  G S+
Sbjct: 568 EPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLSL 611



 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 196/363 (53%), Gaps = 13/363 (3%)

Query: 39  PDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKV 98
           P+ FT P ++K C++L  V +G+ +H  V+K GF  D F  ++LV+MY K  ++  A KV
Sbjct: 29  PNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDALKV 88

Query: 99  FDKMVDRDVVSWNSLIDGYARNGNVEVAMKLF-DEMPSRDAFTWTALLDGLAKCGKVEAA 157
            D+M +R + S N+ + G   NG    A ++F D   S        +   L  CG +E  
Sbjct: 89  LDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCGDIEGG 148

Query: 158 REVFDQMPKKSSVSW-----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQL 212
            ++   +  KS          ++++ Y + G+  LA ++F ++P ++++++N+ ISG   
Sbjct: 149 MQL-HCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFISGLME 207

Query: 213 NGRFLEAMELFEVLLK-EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV 271
           NG       +F ++ K     P+ VT ++A++A + L  L  GR +H  ++K  F  + +
Sbjct: 208 NGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQFETM 267

Query: 272 LGTSLIEMYSKCGSIESALAVFKAIAN-KKLGHWTAIIVGLGMHGLADQALELFMEMRRI 330
           +GT+LI+MYSKC   +SA  VF  + + + L  W ++I G+ ++G  + A+ELF ++   
Sbjct: 268 VGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEKLDSE 327

Query: 331 GMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQ 390
           G+KP + T+  +++  S  G V E  K F+ M++   +VP+++   CL  +L     +  
Sbjct: 328 GLKPDSATWNSLISGFSQLGKVIEAFKFFERMLS-VVMVPSLK---CLTSLLSACSDIWT 383

Query: 391 AKN 393
            KN
Sbjct: 384 LKN 386


>AT2G39620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:16518968-16521478 REVERSE
           LENGTH=836
          Length = 836

 Score =  249 bits (636), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 243/439 (55%), Gaps = 9/439 (2%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +VSW+ +I+ Y    + ++A+ LFR M+   + P+  TL  V++GC+ + A + GK IH 
Sbjct: 366 VVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHC 425

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           Y +K     +    +++++MYAK G    A K F+++  +D V++N+L  GY + G+   
Sbjct: 426 YAIKADIESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANK 485

Query: 126 AMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----WNAMIN 177
           A  ++  M       D+ T   +L   A C        V+ Q+ K    S     +A+IN
Sbjct: 486 AFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALIN 545

Query: 178 GYMKSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
            + K   +  A  LF +    ++ +SWN M++GY L+G+  EA+  F  +  E   P+ V
Sbjct: 546 MFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAV 605

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T ++ + A + L+ L  G  +HS +++  F     +G SL++MY+KCG IES+   F  I
Sbjct: 606 TFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTPVGNSLVDMYAKCGMIESSEKCFIEI 665

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
           +NK +  W  ++     HGLA  A+ LF+ M+   +KP +++F+ VL+AC H GLV+EG 
Sbjct: 666 SNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQENELKPDSVSFLSVLSACRHAGLVEEGK 725

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
           + F+ M   +KI   VEHY C+VD+L +AG   +A  ++  M ++ +  +W +LL+SSR 
Sbjct: 726 RIFEEMGERHKIEAEVEHYACMVDLLGKAGLFGEAVEMMRRMRVKTSVGVWGALLNSSRM 785

Query: 417 HGNLEIGEYAAHNLIEADP 435
           H NL +   A   L++ +P
Sbjct: 786 HCNLWLSNAALCQLVKLEP 804



 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 203/407 (49%), Gaps = 12/407 (2%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD-LLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           P +V WN +I  Y       +AL  F  M     + PD ++    +K C+     ++G +
Sbjct: 62  PGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLR 121

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           IH  + ++G   D ++ ++LV MY K  ++  AR+VFDKM  +DVV+WN+++ G A+NG 
Sbjct: 122 IHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGC 181

Query: 123 VEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW--NAMI 176
              A+ LF +M S     D  +   L+  ++K  K +  R +   + KK  +    + +I
Sbjct: 182 SSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSGLI 241

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           + Y     +  A  +F ++  ++  SW +M++ Y  NG F E +ELF+++    +  + V
Sbjct: 242 DMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKV 301

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
              SAL A + +  L  G  IH + V+     D  + TSL+ MYSKCG +E A  +F  I
Sbjct: 302 AAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINI 361

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
            ++ +  W+A+I      G  D+A+ LF +M RI +KP+A+T   VL  C+       G 
Sbjct: 362 EDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGK 421

Query: 357 K--CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
              C+ +  +   I   +E    ++ +  + G    A    E +P++
Sbjct: 422 SIHCYAIKAD---IESELETATAVISMYAKCGRFSPALKAFERLPIK 465



 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 222/462 (48%), Gaps = 18/462 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           MH   +V+WN ++S    N  S+ ALLLF  M    +  D  +L  +I   S+L      
Sbjct: 161 MHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVC 220

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +HG V+K GF F     S L++MY    ++  A  VF+++  +D  SW +++  YA N
Sbjct: 221 RCLHGLVIKKGFIFA--FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHN 278

Query: 121 GNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS----W 172
           G  E  ++LFD M + D         + L   A  G +     + D   ++  +      
Sbjct: 279 GFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVA 338

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            ++++ Y K G++ +A QLF  +  R+++SW++MI+ Y+  G+  EA+ LF  +++  + 
Sbjct: 339 TSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIK 398

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P+ VT+ S L   +G+A    G+ IH + +K   + +    T++I MY+KCG    AL  
Sbjct: 399 PNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKA 458

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F+ +  K    + A+  G    G A++A +++  M+  G+ P + T +G+L  C+     
Sbjct: 459 FERLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDY 518

Query: 353 DEGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
             G+  +  +I   +     V H   L+++  +   L  A  + +      + V W  ++
Sbjct: 519 ARGSCVYGQIIKHGFDSECHVAH--ALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMM 576

Query: 412 SSSRNHGNLE--IGEYAAHNLIEADPDATGCYTLLSNIYAAA 451
           +    HG  E  +  +    + +  P+A    T ++ + AAA
Sbjct: 577 NGYLLHGQAEEAVATFRQMKVEKFQPNAV---TFVNIVRAAA 615



 Score =  115 bits (289), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 196/438 (44%), Gaps = 20/438 (4%)

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           Q+HG ++  G        + L+N Y+ +    L+R +FD + D  VV WNS+I GY R G
Sbjct: 23  QVHGSLIVSGLK----PHNQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAG 78

Query: 122 NVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFD---QMPKKSSVSW- 172
               A+  F  M        D +++T  L   A     +    + D   +M  +S V   
Sbjct: 79  LHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIG 138

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
            A++  Y K+  +  ARQ+F +M  +++++WN+M+SG   NG    A+ LF  +    + 
Sbjct: 139 TALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVD 198

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
             HV++ + + AVS L      R +H  ++K  F       + LI+MY  C  + +A +V
Sbjct: 199 IDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIF--AFSSGLIDMYCNCADLYAAESV 256

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
           F+ +  K    W  ++     +G  ++ LELF  MR   ++ + +     L A ++ G +
Sbjct: 257 FEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDL 316

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            +G    D  + +  ++  V     L+ +  + G L+ A+ +  ++  R + V W ++++
Sbjct: 317 VKGIAIHDYAVQQ-GLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDR-DVVSWSAMIA 374

Query: 413 SSRNHGNLE--IGEYAAHNLIEADPDATGCYTLLSNIYA-AAGKWDKVSHVREMMKERGV 469
           S    G  +  I  +     I   P+A    ++L      AA +  K  H   +  +   
Sbjct: 375 SYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIES 434

Query: 470 LKDAGCSIVEHRGKLNRF 487
             +   +++    K  RF
Sbjct: 435 ELETATAVISMYAKCGRF 452



 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 127/282 (45%), Gaps = 5/282 (1%)

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNL 200
           +T LL  L +C       +V   +        N +IN Y    + +L+R +F  +    +
Sbjct: 5   YTNLLLMLRECKNFRCLLQVHGSLIVSGLKPHNQLINAYSLFQRQDLSRVIFDSVRDPGV 64

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
           + WNSMI GY   G   EA+  F  + +E G+ P   +   AL A +G      G  IH 
Sbjct: 65  VLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHD 124

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQ 319
            + +   + D  +GT+L+EMY K   + SA  VF  +  K +  W  ++ GL  +G +  
Sbjct: 125 LIAEMGLESDVYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSA 184

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           AL LF +MR   +    ++   ++ A S     D       ++I +  I         L+
Sbjct: 185 ALLLFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSG---LI 241

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLE 421
           D+ C    L  A+++ E +  R ++  W +++++  ++G  E
Sbjct: 242 DMYCNCADLYAAESVFEEV-WRKDESSWGTMMAAYAHNGFFE 282


>AT4G20770.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:11130762-11133086 REVERSE
           LENGTH=774
          Length = 774

 Score =  249 bits (635), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 165/570 (28%), Positives = 269/570 (47%), Gaps = 85/570 (14%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVI------KGC--- 51
           + +P  VS+  +I      ++  +A+ +FR M    +  D   L  ++      +GC   
Sbjct: 200 LSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSL 259

Query: 52  SRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWN 111
           S ++  + GKQIH   L++GFG D  + +SL+ +YAK  +M  A  +F +M + +VVSWN
Sbjct: 260 SEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWN 319

Query: 112 SLIDGYA-----------------------------------RNGNVEVAMKLFDEMPSR 136
            +I G+                                    R+G+VE   ++F  +P  
Sbjct: 320 IMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQP 379

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVSW------------------ 172
               W A+L G +     E A   F QM      P K+++S                   
Sbjct: 380 SVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIH 439

Query: 173 ---------------NAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRF 216
                          + +I  Y +  K+ ++  +F       ++  WNSMISG++ N   
Sbjct: 440 GVVIRTEISKNSHIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLD 499

Query: 217 LEAMELFEVLLKEGLM-PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS 275
            +A+ LF  + +  ++ P+  +  + LS+ S L  L +GR  H  +VK  +  D  + T+
Sbjct: 500 TKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETA 559

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           L +MY KCG I+SA   F A+  K    W  +I G G +G  D+A+ L+ +M   G KP 
Sbjct: 560 LTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPD 619

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII 395
            ITF+ VL ACSH GLV+ G +    M   + I P ++HY C+VD L RAG L+ A+ + 
Sbjct: 620 GITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLA 679

Query: 396 ESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWD 455
           E+ P + + V+W  LLSS R HG++ +    A  L+  DP ++  Y LLSN Y++  +WD
Sbjct: 680 EATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTYSSLRQWD 739

Query: 456 KVSHVREMMKERGVLKDAGCSIVEHRGKLN 485
             + ++ +M +  V K  G S   +   L+
Sbjct: 740 DSAALQGLMNKNRVHKTPGQSWTTYGNDLD 769



 Score =  149 bits (376), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/497 (23%), Positives = 215/497 (43%), Gaps = 88/497 (17%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN +IS  V       AL+++++M+    LP  FTL  V+  CS++     G
Sbjct: 98  MPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFG 157

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEM-GLARKVFDKMVDRDVVSWNSLIDGYAR 119
            + HG  +K G   + FV ++L++MYAK G +     +VF+ +   + VS+ ++I G AR
Sbjct: 158 MRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLAR 217

Query: 120 NGNVEVAMKLFDEMPSR------------------------------------------- 136
              V  A+++F  M  +                                           
Sbjct: 218 ENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALR 277

Query: 137 -----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGY------------ 179
                D     +LL+  AK   +  A  +F +MP+ + VSWN MI G+            
Sbjct: 278 LGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEF 337

Query: 180 -----------------------MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRF 216
                                   +SG +   R++F  +P  ++ +WN+M+SGY     +
Sbjct: 338 LTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHY 397

Query: 217 LEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSL 276
            EA+  F  +  + L P   T+   LS+ + L  L  G+ IH  +++     +  + + L
Sbjct: 398 EEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGL 457

Query: 277 IEMYSKCGSIESALAVFKAIANK-KLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKP 334
           I +YS+C  +E +  +F    N+  +  W ++I G   + L  +AL LF  M +   + P
Sbjct: 458 IAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCP 517

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
           +  +F  VL++CS    +  G +   +++    +  +      L D+ C+ G +  A+  
Sbjct: 518 NETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETA-LTDMYCKCGEIDSARQF 576

Query: 395 IESMPMRPNKVIWMSLL 411
            +++ +R N VIW  ++
Sbjct: 577 FDAV-LRKNTVIWNEMI 592



 Score =  149 bits (376), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 195/417 (46%), Gaps = 57/417 (13%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GK IHG+++++G   D ++ + L+++Y + G+   ARKVFD+M  RDV SWN+ +    +
Sbjct: 25  GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVS-- 171
            G++  A ++FD MP RD  +W  ++  L + G  E A  V+ +M      P + +++  
Sbjct: 85  VGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASV 144

Query: 172 -------------------------------WNAMINGYMKSGKI-NLARQLFGQMPGRN 199
                                           NA+++ Y K G I +   ++F  +   N
Sbjct: 145 LSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQPN 204

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV---TILSALSAVSGL----AVLG 252
            +S+ ++I G     + LEA+++F ++ ++G+    V    ILS  +   G      + G
Sbjct: 205 EVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYG 264

Query: 253 N--GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVG 310
           N  G+ IH   ++  F  D  L  SL+E+Y+K   +  A  +F  +    +  W  +IVG
Sbjct: 265 NELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVG 324

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
            G    +D+++E    MR  G +P+ +T I VL AC   G V+ G + F  +       P
Sbjct: 325 FGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSIPQ-----P 379

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEIGE 424
           +V  +  ++       H ++A +    M    ++P+K     +LSS      LE G+
Sbjct: 380 SVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGGK 436


>AT4G25270.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:12937253-12938836 REVERSE
           LENGTH=527
          Length = 527

 Score =  249 bits (635), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 238/446 (53%), Gaps = 27/446 (6%)

Query: 39  PDGFTLPCVIKGCSRLHAVQEGKQIH----GYVLKIGFGFDKFVQSSLVNMYAKWGEMGL 94
           P+ F    +++ C  L A+  G ++H     Y+L+   G    + S LV +YA  G   +
Sbjct: 92  PEIFA--SLLETCYSLRAIDHGVRVHHLIPPYLLRNNLG----ISSKLVRLYASCGYAEV 145

Query: 95  ARKVFDKMVDRDV--VSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGL 148
           A +VFD+M  RD    +WNSLI GYA  G  E AM L+ +M       D FT+  +L   
Sbjct: 146 AHEVFDRMSKRDSSPFAWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKAC 205

Query: 149 AKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWN 204
              G V+    +   + K+         NA++  Y K G I  AR +F  +P ++ +SWN
Sbjct: 206 GGIGSVQIGEAIHRDLVKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWN 265

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKH 264
           SM++GY  +G   EA+++F ++++ G+ P  V I S L+ V       +GR +H ++++ 
Sbjct: 266 SMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVLARVLSFK---HGRQLHGWVIRR 322

Query: 265 CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELF 324
             + +  +  +LI +YSK G +  A  +F  +  +    W AII     H      L+ F
Sbjct: 323 GMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAII---SAHSKNSNGLKYF 379

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
            +M R   KP  ITF+ VL+ C++ G+V++G + F +M  EY I P +EHY C+V++  R
Sbjct: 380 EQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVNLYGR 439

Query: 385 AGHLQQAKN-IIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTL 443
           AG +++A + I++ M +     +W +LL +   HGN +IGE AA  L E +PD    + L
Sbjct: 440 AGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFELEPDNEHNFEL 499

Query: 444 LSNIYAAAGKWDKVSHVREMMKERGV 469
           L  IY+ A + + V  VR+MM +RG+
Sbjct: 500 LIRIYSKAKRAEDVERVRQMMVDRGL 525



 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 168/326 (51%), Gaps = 25/326 (7%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           +WN +IS Y    +  DA+ L+ QM    + PD FT P V+K C  + +VQ G+ IH  +
Sbjct: 162 AWNSLISGYAELGQYEDAMALYFQMAEDGVKPDRFTFPRVLKACGGIGSVQIGEAIHRDL 221

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           +K GFG+D +V ++LV MYAK G++  AR VFD +  +D VSWNS++ GY  +G +  A+
Sbjct: 222 VKEGFGYDVYVLNALVVMYAKCGDIVKARNVFDMIPHKDYVSWNSMLTGYLHHGLLHEAL 281

Query: 128 KLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW-----NAMI 176
            +F  M      P + A +       LA+    +  R++   + ++  + W     NA+I
Sbjct: 282 DIFRLMVQNGIEPDKVAISSV-----LARVLSFKHGRQLHGWVIRR-GMEWELSVANALI 335

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
             Y K G++  A  +F QM  R+ +SWN++IS +  N      ++ FE + +    P  +
Sbjct: 336 VLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSN---GLKYFEQMHRANAKPDGI 392

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALAVFK 294
           T +S LS  +   ++ +G  + S M K  + +D  +     ++ +Y + G +E A ++  
Sbjct: 393 TFVSVLSLCANTGMVEDGERLFSLMSKE-YGIDPKMEHYACMVNLYGRAGMMEEAYSMIV 451

Query: 295 AIANKKLGH--WTAIIVGLGMHGLAD 318
                + G   W A++    +HG  D
Sbjct: 452 QEMGLEAGPTVWGALLYACYLHGNTD 477



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 128/234 (54%), Gaps = 21/234 (8%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VSWN +++ Y+H+   ++AL +FR M+ + + PD   +  V+   +R+ + + G+Q+HG+
Sbjct: 262 VSWNSMLTGYLHHGLLHEALDIFRLMVQNGIEPDKVAISSVL---ARVLSFKHGRQLHGW 318

Query: 67  VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVA 126
           V++ G  ++  V ++L+ +Y+K G++G A  +FD+M++RD VSWN++I  +++N N    
Sbjct: 319 VIRRGMEWELSVANALIVLYSKRGQLGQACFIFDQMLERDTVSWNAIISAHSKNSN---G 375

Query: 127 MKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMIN 177
           +K F++M       D  T+ ++L   A  G VE    +F  M K+  +      +  M+N
Sbjct: 376 LKYFEQMHRANAKPDGITFVSVLSLCANTGMVEDGERLFSLMSKEYGIDPKMEHYACMVN 435

Query: 178 GYMKSGKINLARQLFGQMPGRNL--ISWNSMISGYQLNGRF----LEAMELFEV 225
            Y ++G +  A  +  Q  G       W +++    L+G      + A  LFE+
Sbjct: 436 LYGRAGMMEEAYSMIVQEMGLEAGPTVWGALLYACYLHGNTDIGEVAAQRLFEL 489


>AT1G64310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23866053-23867711 FORWARD
           LENGTH=552
          Length = 552

 Score =  246 bits (628), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 243/467 (52%), Gaps = 9/467 (1%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           WN II  Y   H+    L LF Q+L  D  PD FT  C+ +G S     +  + IHG  +
Sbjct: 74  WNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGLRCIHGIAI 133

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
             G GFD+   S++V  Y+K G +  A K+F  + D D+  WN +I GY   G  +  + 
Sbjct: 134 VSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFWDKGIN 193

Query: 129 LFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYM 180
           LF+ M  R    + +T  AL  GL     +  A  V     K      S    A++N Y 
Sbjct: 194 LFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYS 253

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           +   I  A  +F  +   +L++ +S+I+GY   G   EA+ LF  L   G  P  V +  
Sbjct: 254 RCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAI 313

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
            L + + L+   +G+ +HS++++   +LD  + ++LI+MYSKCG ++ A+++F  I  K 
Sbjct: 314 VLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIPEKN 373

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
           +  + ++I+GLG+HG A  A E F E+  +G+ P  ITF  +L  C H GL+++G + F+
Sbjct: 374 IVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFE 433

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
            M +E+ I P  EHY  +V ++  AG L++A   + S+    +  I  +LLS    H N 
Sbjct: 434 RMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLSCCEVHENT 493

Query: 421 EIGEYAAHNLIEADPDATGCY-TLLSNIYAAAGKWDKVSHVREMMKE 466
            + E  A N+ +   +    Y  +LSN+YA  G+WD+V  +R+ + E
Sbjct: 494 HLAEVVAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISE 540



 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 22/372 (5%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +++H +V K     D +  + L   YA   ++  ARK+FD   +R V  WNS+I  YA+ 
Sbjct: 25  QKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDVFPERSVFLWNSIIRAYAKA 84

Query: 121 GNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREV----------FDQMPK 166
                 + LF ++   D     FT+  L  G ++    +  R +          FDQ   
Sbjct: 85  HQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGLRCIHGIAIVSGLGFDQ--- 141

Query: 167 KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL 226
              +  +A++  Y K+G I  A +LF  +P  +L  WN MI GY   G + + + LF ++
Sbjct: 142 ---ICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCCGFWDKGINLFNLM 198

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
              G  P+  T+++  S +   ++L     +H+F +K   D    +G +L+ MYS+C  I
Sbjct: 199 QHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVGCALVNMYSRCMCI 258

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
            SA +VF +I+   L   +++I G    G   +AL LF E+R  G KP  +    VL +C
Sbjct: 259 ASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSC 318

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVI 406
           +       G +    +I    +   ++    L+D+  + G L+ A ++   +P + N V 
Sbjct: 319 AELSDSVSGKEVHSYVI-RLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIPEK-NIVS 376

Query: 407 WMSLLSSSRNHG 418
           + SL+     HG
Sbjct: 377 FNSLILGLGLHG 388



 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 4/171 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +P LV+ + +I+ Y       +AL LF ++      PD   +  V+  C+ L     G
Sbjct: 268 ISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKKPDCVLVAIVLGSCAELSDSVSG 327

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K++H YV+++G   D  V S+L++MY+K G +  A  +F  + ++++VS+NSLI G   +
Sbjct: 328 KEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSLFAGIPEKNIVSFNSLILGLGLH 387

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK 167
           G    A + F E+       D  T++ALL      G +   +E+F++M  +
Sbjct: 388 GFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLLNKGQEIFERMKSE 438


>AT3G28640.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:10731518-10733032 REVERSE
           LENGTH=504
          Length = 504

 Score =  246 bits (627), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/485 (29%), Positives = 254/485 (52%), Gaps = 24/485 (4%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMG----LARKVFDKM 102
           +I    R + V++ K  H   +  G   + +  S L+  +     +      A  +FD +
Sbjct: 14  LILASQRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSI 73

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLF---------DEMPSRDAFTWTALLDGLAKC-- 151
              +   ++++I   +R+    + ++ F         D  PS   F +  ++  L  C  
Sbjct: 74  EIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFL-IVACLKACFF 132

Query: 152 --GKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISG 209
             GK      V + +    S     ++  Y++   +  AR++F ++P  +++ W+ +++G
Sbjct: 133 SVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVLMNG 192

Query: 210 YQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF-DL 268
           Y   G   E +E+F  +L +GL P   ++ +AL+A + +  L  G+WIH F+ K  + + 
Sbjct: 193 YVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSWIES 252

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
           D  +GT+L++MY+KCG IE+A+ VFK +  + +  W A+I G   +G A +A+     + 
Sbjct: 253 DVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYGYAKKAMTCLERLE 312

Query: 329 R-IGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGH 387
           R  G+KP ++  +GVL AC+H G ++EG    + M   Y+I P  EHY C+VD++CRAG 
Sbjct: 313 REDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEHYSCIVDLMCRAGR 372

Query: 388 LQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD----PDATGCYTL 443
           L  A N+IE MPM+P   +W +LL+  R H N+E+GE A  NL++ +     +       
Sbjct: 373 LDDALNLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVKNLLDLEKGNVEEEEAALVQ 432

Query: 444 LSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAK 503
           LSNIY +  +  + S VR M+++RGV K  G S++E  G + +F+ GD SHP    I+  
Sbjct: 433 LSNIYFSVQRNPEASKVRGMIEQRGVRKTPGWSVLEVDGNVTKFVSGDVSHPNLLQIHTV 492

Query: 504 LREMS 508
           +  +S
Sbjct: 493 IHLLS 497



 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 148/302 (49%), Gaps = 13/302 (4%)

Query: 26  LLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIG-FGFDKFVQSSLVN 84
            LL  +    D+ P   T   +I  C +      GKQIH +V+K G F  D  VQ+ ++ 
Sbjct: 101 FLLMVKEEEEDIAPSYLTFHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLR 160

Query: 85  MYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFT 140
           +Y +   +  ARKVFD++   DVV W+ L++GY R G     +++F EM  +    D F+
Sbjct: 161 IYVEDKLLLDARKVFDEIPQPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFS 220

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-----AMINGYMKSGKINLARQLFGQM 195
            T  L   A+ G +   + + + + KKS +  +     A+++ Y K G I  A ++F ++
Sbjct: 221 VTTALTACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKL 280

Query: 196 PGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE-GLMPSHVTILSALSAVSGLAVLGNG 254
             RN+ SW ++I GY   G   +AM   E L +E G+ P  V +L  L+A +    L  G
Sbjct: 281 TRRNVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEG 340

Query: 255 R-WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH-WTAIIVGLG 312
           R  + +   ++         + ++++  + G ++ AL + + +  K L   W A++ G  
Sbjct: 341 RSMLENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNGCR 400

Query: 313 MH 314
            H
Sbjct: 401 TH 402



 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 121/219 (55%), Gaps = 12/219 (5%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +V W+++++ YV     ++ L +FR+ML   L PD F++   +  C+++ A+ +GK 
Sbjct: 180 QPDVVKWDVLMNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKW 239

Query: 63  IHGYVLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           IH +V K  +   D FV ++LV+MYAK G +  A +VF K+  R+V SW +LI GYA  G
Sbjct: 240 IHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLTRRNVFSWAALIGGYAAYG 299

Query: 122 NVEVAMKLFDEMPSRDAFT--WTALLDGLAKC---GKVEAAREVFDQMPKKSSVS----- 171
             + AM   + +   D        LL  LA C   G +E  R + + M  +  ++     
Sbjct: 300 YAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSMLENMEARYEITPKHEH 359

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLIS-WNSMISG 209
           ++ +++   ++G+++ A  L  +MP + L S W ++++G
Sbjct: 360 YSCIVDLMCRAGRLDDALNLIEKMPMKPLASVWGALLNG 398



 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/291 (19%), Positives = 123/291 (42%), Gaps = 13/291 (4%)

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMINGYMKSGKIN----LARQL 191
           +W +L+    +C  V+  +            +++ + + ++  ++    +N     A  +
Sbjct: 10  SWKSLILASQRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSI 69

Query: 192 FGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE---GLMPSHVTILSALSAVSGL 248
           F  +   N   +++MI     + +    +  F +++KE    + PS++T    + A    
Sbjct: 70  FDSIEIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDIAPSYLTFHFLIVACLKA 129

Query: 249 AVLGNGRWIHSFMVKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
                G+ IH ++VK+  F  D  + T ++ +Y +   +  A  VF  I    +  W  +
Sbjct: 130 CFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFDEIPQPDVVKWDVL 189

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           + G    GL  + LE+F EM   G++P   +    L AC+  G + +G    + +  +  
Sbjct: 190 MNGYVRCGLGSEGLEVFREMLVKGLEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKSW 249

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           I   V     LVD+  + G ++ A  + + +  R N   W +L+     +G
Sbjct: 250 IESDVFVGTALVDMYAKCGCIETAVEVFKKLTRR-NVFSWAALIGGYAAYG 299


>AT5G43790.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:17592099-17593481 REVERSE
           LENGTH=460
          Length = 460

 Score =  245 bits (626), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 137/444 (30%), Positives = 238/444 (53%), Gaps = 18/444 (4%)

Query: 52  SRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWN 111
           S+  ++Q  KQIH  ++ IG     +  S L+++ +    +  A  +  ++ +  V  +N
Sbjct: 17  SKCKSLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVC-LSYALSILRQIPNPSVFLYN 75

Query: 112 SLIDGYARNGN---VEVAMKLFDEMPSR-------DAFTWTALLDGLA------KCGKVE 155
           +LI     N N     +A  L+D++ S        + FT+ +L           + G+  
Sbjct: 76  TLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQWHRHGRAL 135

Query: 156 AAREV-FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
            A  + F +          A++  Y   GK+  AR LF ++   +L +WN++++ Y  + 
Sbjct: 136 HAHVLKFLEPVNHDRFVQAALVGFYANCGKLREARSLFERIREPDLATWNTLLAAYANSE 195

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
                 E+  + ++  + P+ +++++ + + + L     G W H +++K+   L+  +GT
Sbjct: 196 EIDSDEEVLLLFMRMQVRPNELSLVALIKSCANLGEFVRGVWAHVYVLKNNLTLNQFVGT 255

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           SLI++YSKCG +  A  VF  ++ + +  + A+I GL +HG   + +EL+  +   G+ P
Sbjct: 256 SLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGLAVHGFGQEGIELYKSLISQGLVP 315

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
            + TF+  ++ACSH GLVDEG + F+ M   Y I P VEHYGCLVD+L R+G L++A+  
Sbjct: 316 DSATFVVTISACSHSGLVDEGLQIFNSMKAVYGIEPKVEHYGCLVDLLGRSGRLEEAEEC 375

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKW 454
           I+ MP++PN  +W S L SS+ HG+ E GE A  +L+  + + +G Y LLSNIYA   +W
Sbjct: 376 IKKMPVKPNATLWRSFLGSSQTHGDFERGEIALKHLLGLEFENSGNYVLLSNIYAGVNRW 435

Query: 455 DKVSHVREMMKERGVLKDAGCSIV 478
             V   RE+MK+  V K  G S +
Sbjct: 436 TDVEKTRELMKDHRVNKSPGISTL 459



 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 118/229 (51%), Gaps = 16/229 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHR---SNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAV 57
           + +P L +WN +++ Y ++       + LLLF +M    + P+  +L  +IK C+ L   
Sbjct: 176 IREPDLATWNTLLAAYANSEEIDSDEEVLLLFMRM---QVRPNELSLVALIKSCANLGEF 232

Query: 58  QEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
             G   H YVLK     ++FV +SL+++Y+K G +  ARKVFD+M  RDV  +N++I G 
Sbjct: 233 VRGVWAHVYVLKNNLTLNQFVGTSLIDLYSKCGCLSFARKVFDEMSQRDVSCYNAMIRGL 292

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-- 171
           A +G  +  ++L+  + S+    D+ T+   +   +  G V+   ++F+ M     +   
Sbjct: 293 AVHGFGQEGIELYKSLISQGLVPDSATFVVTISACSHSGLVDEGLQIFNSMKAVYGIEPK 352

Query: 172 ---WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRF 216
              +  +++   +SG++  A +   +MP + N   W S +   Q +G F
Sbjct: 353 VEHYGCLVDLLGRSGRLEEAEECIKKMPVKPNATLWRSFLGSSQTHGDF 401


>AT2G36730.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:15405068-15406573 REVERSE
           LENGTH=501
          Length = 501

 Score =  244 bits (622), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 255/471 (54%), Gaps = 19/471 (4%)

Query: 48  IKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNM--YAKWGEMGLARKVFDKMVDR 105
           +K CS   +++   QIHG +       D F+ S LV +   +   ++  AR +     D 
Sbjct: 20  LKLCS---SIKHLLQIHGQIHLSSLQNDSFIISELVRVSSLSLAKDLAFARTLLLHSSDS 76

Query: 106 DVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVF 161
              +WN L  GY+ + +   ++ ++ EM  R    +  T+  LL   A    + A R++ 
Sbjct: 77  TPSTWNMLSRGYSSSDSPVESIWVYSEMKRRGIKPNKLTFPFLLKACASFLGLTAGRQIQ 136

Query: 162 DQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFL 217
            ++ K          N +I+ Y    K + AR++F +M  RN++SWNS+++    NG+  
Sbjct: 137 VEVLKHGFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMTALVENGKLN 196

Query: 218 EAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLI 277
              E F  ++ +   P   T++  LSA  G   L  G+ +HS ++    +L+  LGT+L+
Sbjct: 197 LVFECFCEMIGKRFCPDETTMVVLLSACGG--NLSLGKLVHSQVMVRELELNCRLGTALV 254

Query: 278 EMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHA 336
           +MY+K G +E A  VF+ + +K +  W+A+IVGL  +G A++AL+LF +M +   ++P+ 
Sbjct: 255 DMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQYGFAEEALQLFSKMMKESSVRPNY 314

Query: 337 ITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE 396
           +TF+GVL ACSH GLVD+G K F  M   +KI P + HYG +VDIL RAG L +A + I+
Sbjct: 315 VTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMIHYGAMVDILGRAGRLNEAYDFIK 374

Query: 397 SMPMRPNKVIWMSLLSSSRNHGNLE---IGEYAAHNLIEADPDATGCYTLLSNIYAAAGK 453
            MP  P+ V+W +LLS+   H + +   IGE     LIE +P  +G   +++N +A A  
Sbjct: 375 KMPFEPDAVVWRTLLSACSIHHDEDDEGIGEKVKKRLIELEPKRSGNLVIVANRFAEARM 434

Query: 454 WDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKL 504
           W + + VR +MKE  + K AG S +E  G  +RF  G     +  +IY  L
Sbjct: 435 WAEAAEVRRVMKETKMKKIAGESCLELGGSFHRFFSGYDPRSEYVSIYELL 485



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 13/220 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN I++  V N + N     F +M+     PD  T+  ++  C     +  G
Sbjct: 174 MTERNVVSWNSIMTALVENGKLNLVFECFCEMIGKRFCPDETTMVVLLSACG--GNLSLG 231

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           K +H  V+      +  + ++LV+MYAK G +  AR VF++MVD++V +W+++I G A+ 
Sbjct: 232 KLVHSQVMVRELELNCRLGTALVDMYAKSGGLEYARLVFERMVDKNVWTWSAMIVGLAQY 291

Query: 121 GNVEVAMKLFDEMPSRDA-----FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           G  E A++LF +M    +      T+  +L   +  G V+   + F +M K   +     
Sbjct: 292 GFAEEALQLFSKMMKESSVRPNYVTFLGVLCACSHTGLVDDGYKYFHEMEKIHKIKPMMI 351

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISG 209
            + AM++   ++G++N A     +MP   + + W +++S 
Sbjct: 352 HYGAMVDILGRAGRLNEAYDFIKKMPFEPDAVVWRTLLSA 391


>AT2G37320.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:15667223-15668725 FORWARD
           LENGTH=500
          Length = 500

 Score =  243 bits (619), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 127/317 (40%), Positives = 189/317 (59%), Gaps = 2/317 (0%)

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y  SG++  A ++F +MP RN++SW +MISG+    R    ++L+  + K    P+  T 
Sbjct: 165 YRDSGEVENAYKVFEEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTF 224

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
            + LSA +G   LG GR +H   +         +  SLI MY KCG ++ A  +F   +N
Sbjct: 225 TALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSN 284

Query: 299 KKLGHWTAIIVGLGMHGLADQALELF-MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
           K +  W ++I G   HGLA QA+ELF + M + G KP AIT++GVL++C H GLV EG K
Sbjct: 285 KDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRK 344

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
            F++M  E+ + P + HY CLVD+L R G LQ+A  +IE+MPM+PN VIW SLL S R H
Sbjct: 345 FFNLMA-EHGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVH 403

Query: 418 GNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSI 477
           G++  G  AA   +  +PD    +  L+N+YA+ G W + + VR++MK++G+  + GCS 
Sbjct: 404 GDVWTGIRAAEERLMLEPDCAATHVQLANLYASVGYWKEAATVRKLMKDKGLKTNPGCSW 463

Query: 478 VEHRGKLNRFIVGDKSH 494
           +E    +  F   D S+
Sbjct: 464 IEINNYVFMFKAEDGSN 480



 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 158/325 (48%), Gaps = 43/325 (13%)

Query: 40  DGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVF 99
           D + L   ++ C      + G   H   LK GF  D ++ SSLV +Y   GE+  A KVF
Sbjct: 119 DAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVF 178

Query: 100 DKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVE 155
           ++M +R+VVSW ++I G+A+   V++ +KL+ +M    +    +T+TALL      G + 
Sbjct: 179 EEMPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALG 238

Query: 156 AAREVFDQMPKKSSVSW----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQ 211
             R V  Q       S+    N++I+ Y K G +  A ++F Q   ++++SWNSMI+GY 
Sbjct: 239 QGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYA 298

Query: 212 LNGRFLEAMELFEVLL-KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG 270
            +G  ++A+ELFE+++ K G  P  +T L  LS+     ++  GR   + M +H      
Sbjct: 299 QHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGL---- 354

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI 330
                                        +L H++ ++  LG  GL  +ALEL   M   
Sbjct: 355 ---------------------------KPELNHYSCLVDLLGRFGLLQEALELIENM--- 384

Query: 331 GMKPHAITFIGVLNACSHKGLVDEG 355
            MKP+++ +  +L +C   G V  G
Sbjct: 385 PMKPNSVIWGSLLFSCRVHGDVWTG 409



 Score =  102 bits (254), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 131/257 (50%), Gaps = 12/257 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW  +IS +    R +  L L+ +M      P+ +T   ++  C+   A+ +G
Sbjct: 181 MPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQG 240

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H   L +G      + +SL++MY K G++  A ++FD+  ++DVVSWNS+I GYA++
Sbjct: 241 RSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQH 300

Query: 121 GNVEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVS 171
           G    A++LF+ M  +     DA T+  +L      G V+  R+ F+ M     K     
Sbjct: 301 GLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGRKFFNLMAEHGLKPELNH 360

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFE--VLLK 228
           ++ +++   + G +  A +L   MP + N + W S++   +++G     +   E  ++L+
Sbjct: 361 YSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLLFSCRVHGDVWTGIRAAEERLMLE 420

Query: 229 EGLMPSHVTILSALSAV 245
                +HV + +  ++V
Sbjct: 421 PDCAATHVQLANLYASV 437



 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 10/170 (5%)

Query: 253 NGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLG 312
            G   H   +K  F  D  LG+SL+ +Y   G +E+A  VF+ +  + +  WTA+I G  
Sbjct: 138 TGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEEMPERNVVSWTAMISGFA 197

Query: 313 MHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN----KCFDMMINEYKI 368
                D  L+L+ +MR+    P+  TF  +L+AC+  G + +G     +   M +  Y  
Sbjct: 198 QEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLH 257

Query: 369 VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           +        L+ + C+ G L+ A  I +    + + V W S+++    HG
Sbjct: 258 ISN-----SLISMYCKCGDLKDAFRIFDQFSNK-DVVSWNSMIAGYAQHG 301


>AT5G42450.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16977297-16978850 FORWARD
           LENGTH=517
          Length = 517

 Score =  242 bits (618), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 152/514 (29%), Positives = 254/514 (49%), Gaps = 69/514 (13%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           ++S   +I  +V   R  +A   F+++L   + P+ FT   VI   +    V+ GKQ+H 
Sbjct: 58  VISATAVIGRFVKESRHVEASQAFKRLLCLGIRPNEFTFGTVIGSSTTSRDVKLGKQLHC 117

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
           Y LK                      MGLA  VF                          
Sbjct: 118 YALK----------------------MGLASNVF-------------------------- 129

Query: 126 AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKI 185
                           +A+L+   K   +  AR  FD     + VS   +I+GY+K  + 
Sbjct: 130 --------------VGSAVLNCYVKLSTLTDARRCFDDTRDPNVVSITNLISGYLKKHEF 175

Query: 186 NLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL-MPSHVTILSALSA 244
             A  LF  MP R++++WN++I G+   GR  EA+  F  +L+EG+ +P+  T   A++A
Sbjct: 176 EEALSLFRAMPERSVVTWNAVIGGFSQTGRNEEAVNTFVDMLREGVVIPNESTFPCAITA 235

Query: 245 VSGLAVLGNGRWIHSFMVKHCFD-LDGVLGTSLIEMYSKCGSIESALAVFKAIANKK--L 301
           +S +A  G G+ IH+  +K      +  +  SLI  YSKCG++E +L  F  +  ++  +
Sbjct: 236 ISNIASHGAGKSIHACAIKFLGKRFNVFVWNSLISFYSKCGNMEDSLLAFNKLEEEQRNI 295

Query: 302 GHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGVLNACSHKGLVDEGNKCFD 360
             W ++I G   +G  ++A+ +F +M +   ++P+ +T +GVL AC+H GL+ EG   F+
Sbjct: 296 VSWNSMIWGYAHNGRGEEAVAMFEKMVKDTNLRPNNVTILGVLFACNHAGLIQEGYMYFN 355

Query: 361 MMINEYKI--VPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
             +N+Y    +  +EHY C+VD+L R+G  ++A+ +I+SMP+ P    W +LL   + H 
Sbjct: 356 KAVNDYDDPNLLELEHYACMVDMLSRSGRFKEAEELIKSMPLDPGIGFWKALLGGCQIHS 415

Query: 419 NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
           N  + + AA  ++E DP     Y +LSN Y+A   W  VS +R  MKE G+ +  GCS +
Sbjct: 416 NKRLAKLAASKILELDPRDVSSYVMLSNAYSAMENWQNVSLIRRKMKETGLKRFTGCSWI 475

Query: 479 EHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLK 512
           E R ++  F+  DK++     +Y  L  +S+ L+
Sbjct: 476 EVRDQIRVFVNADKNNELKDEVYRMLALVSQHLE 509


>AT4G31070.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:15118696-15120537 REVERSE
           LENGTH=613
          Length = 613

 Score =  241 bits (615), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/501 (30%), Positives = 261/501 (52%), Gaps = 34/501 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE- 59
           +H+ T+   ++I SC   +    +A+ L ++M  +  +P    +  ++  C+R+ +  + 
Sbjct: 109 LHRDTVSYCSIINSC-CQDGLLYEAMKLIKEMYFYGFIPKSELVASLLALCTRMGSSSKV 167

Query: 60  GKQIHGYVLKIGFGFDKFVQSS------LVNMYAKWGEMGLARKVFDKMVDRDVVSWNSL 113
            +  H  VL      D+ +Q S      LV+MY K+ +   A  VFD+M  ++ VSW ++
Sbjct: 168 ARMFHALVL-----VDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAM 222

Query: 114 IDGYARNGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK 167
           I G   N N E+ + LF  M      P+R       LL  L  C ++     +  ++   
Sbjct: 223 ISGCVANQNYEMGVDLFRAMQRENLRPNR-----VTLLSVLPACVELNYGSSLVKEIHGF 277

Query: 168 S--------SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA 219
           S             A +  Y + G ++L+R LF     R+++ W+SMISGY   G   E 
Sbjct: 278 SFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEV 337

Query: 220 MELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEM 279
           M L   + KEG+  + VT+L+ +SA +   +L     +HS ++K  F    +LG +LI+M
Sbjct: 338 MNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDM 397

Query: 280 YSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
           Y+KCGS+ +A  VF  +  K L  W+++I   G+HG   +ALE+F  M + G +   + F
Sbjct: 398 YAKCGSLSAAREVFYELTEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAF 457

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
           + +L+AC+H GLV+E    F     +Y +  T+EHY C +++L R G +  A  +  +MP
Sbjct: 458 LAILSACNHAGLVEEAQTIFT-QAGKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMP 516

Query: 400 MRPNKVIWMSLLSSSRNHGNLEI-GEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
           M+P+  IW SLLS+   HG L++ G+  A+ L++++PD    Y LLS I+  +G +    
Sbjct: 517 MKPSARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGNYHAAE 576

Query: 459 HVREMMKERGVLKDAGCSIVE 479
            VR +M+ R + K  G S +E
Sbjct: 577 EVRRVMQRRKLNKCYGFSKIE 597



 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/418 (27%), Positives = 215/418 (51%), Gaps = 19/418 (4%)

Query: 17  VHNHRSNDALLLFRQMLHHDLLPDGFT--LPCVIKGCS-RLHAVQEGKQIHGYVLKIGFG 73
           V +   ++AL L++  +H  L  +GFT  LP VIK C+ +      G Q+H   LK G  
Sbjct: 21  VSDQFYDEALRLYKLKIH-SLGTNGFTAILPSVIKACAFQQEPFLLGAQLHCLCLKAGAD 79

Query: 74  FDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM 133
            D  V +SL++MYAK+      RKVFD+M+ RD VS+ S+I+   ++G +  AMKL  EM
Sbjct: 80  CDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEM 139

Query: 134 PSRDAFTWTALLDG-LAKCGKVEAAREV---------FDQMPKKSSVSWNAMINGYMKSG 183
                   + L+   LA C ++ ++ +V          D+  ++S +   A+++ Y+K  
Sbjct: 140 YFYGFIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVLLSTALVDMYLKFD 199

Query: 184 KINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALS 243
               A  +F QM  +N +SW +MISG   N  +   ++LF  + +E L P+ VT+LS L 
Sbjct: 200 DHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQRENLRPNRVTLLSVLP 259

Query: 244 AVSGLAVLGNG--RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL 301
           A   L   G+   + IH F  +H    D  L  + + MY +CG++  +  +F+    + +
Sbjct: 260 ACVELN-YGSSLVKEIHGFSFRHGCHADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDV 318

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
             W+++I G    G   + + L  +MR+ G++ +++T + +++AC++  L+   +     
Sbjct: 319 VMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQ 378

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           ++ +   +  +     L+D+  + G L  A+ +   +  + + V W S++++   HG+
Sbjct: 379 IL-KCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEK-DLVSWSSMINAYGLHGH 434


>AT5G47460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:19252463-19254193 REVERSE
           LENGTH=576
          Length = 576

 Score =  241 bits (614), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 259/492 (52%), Gaps = 36/492 (7%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M  P ++SWN ++S YV + R  + + LF ++   D+ P+ F+    +  C+RLH    G
Sbjct: 116 MPDPDVISWNSLVSGYVQSGRFQEGICLFLELHRSDVFPNEFSFTAALAACARLHLSPLG 175

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             IH  ++K+G                   E G            +VV  N LID Y + 
Sbjct: 176 ACIHSKLVKLGL------------------EKG------------NVVVGNCLIDMYGKC 205

Query: 121 GNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYM 180
           G ++ A+ +F  M  +D  +W A++   ++ GK+E     F QMP   +V++N +I+ ++
Sbjct: 206 GFMDDAVLVFQHMEEKDTVSWNAIVASCSRNGKLELGLWFFHQMPNPDTVTYNELIDAFV 265

Query: 181 KSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           KSG  N A Q+   MP  N  SWN++++GY  + +  EA E F  +   G+     ++  
Sbjct: 266 KSGDFNNAFQVLSDMPNPNSSSWNTILTGYVNSEKSGEATEFFTKMHSSGVRFDEYSLSI 325

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKK 300
            L+AV+ LAV+  G  IH+   K   D   V+ ++LI+MYSKCG ++ A  +F  +  K 
Sbjct: 326 VLAAVAALAVVPWGSLIHACAHKLGLDSRVVVASALIDMYSKCGMLKHAELMFWTMPRKN 385

Query: 301 LGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSHKGLVDEGN-KC 358
           L  W  +I G   +G + +A++LF ++++   +KP   TF+ +L  CSH  +  E     
Sbjct: 386 LIVWNEMISGYARNGDSIEAIKLFNQLKQERFLKPDRFTFLNLLAVCSHCEVPMEVMLGY 445

Query: 359 FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           F+MMINEY+I P+VEH   L+  + + G + QAK +I+      + V W +LL +     
Sbjct: 446 FEMMINEYRIKPSVEHCCSLIRAMGQRGEVWQAKQVIQEFGFGYDGVAWRALLGACSARK 505

Query: 419 NLEIGEYAAHNLIE---ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGC 475
           +L+  +  A  +IE   AD D    Y ++SN+YA   +W +V  +R++M+E GVLK+ G 
Sbjct: 506 DLKAAKTVAAKMIELGDADKDEY-LYIVMSNLYAYHERWREVGQIRKIMRESGVLKEVGS 564

Query: 476 SIVEHRGKLNRF 487
           S ++ R K + +
Sbjct: 565 SWIDSRTKCSSY 576



 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 143/316 (45%), Gaps = 49/316 (15%)

Query: 109 SWNSLIDGYARNGNVEV---AMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP 165
           SW++++   AR G++ V   A++L ++    DA     LL      G V   R++   + 
Sbjct: 23  SWSTIVPALARFGSIGVLRAAVELINDGEKPDASPLVHLLRVSGNYGYVSLCRQLHGYVT 82

Query: 166 KKSSVS----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAME 221
           K   VS     N+++  Y  S  +  A ++F +MP  ++ISWNS++SGY  +GRF E + 
Sbjct: 83  KHGFVSNTRLSNSLMRFYKTSDSLEDAHKVFDEMPDPDVISWNSLVSGYVQSGRFQEGIC 142

Query: 222 LFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL-DGVLGTSLIEMY 280
           LF  L +  + P+  +  +AL+A + L +   G  IHS +VK   +  + V+G  LI+MY
Sbjct: 143 LFLELHRSDVFPNEFSFTAALAACARLHLSPLGACIHSKLVKLGLEKGNVVVGNCLIDMY 202

Query: 281 SKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
            KCG ++ A+ VF+ +  K    W AI+                                
Sbjct: 203 GKCGFMDDAVLVFQHMEEKDTVSWNAIVA------------------------------- 231

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM 400
               +CS  G ++ G   F  M N     P    Y  L+D   ++G    A  ++  MP 
Sbjct: 232 ----SCSRNGKLELGLWFFHQMPN-----PDTVTYNELIDAFVKSGDFNNAFQVLSDMP- 281

Query: 401 RPNKVIWMSLLSSSRN 416
            PN   W ++L+   N
Sbjct: 282 NPNSSSWNTILTGYVN 297


>AT3G26540.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9744542-9746644 REVERSE
           LENGTH=700
          Length = 700

 Score =  240 bits (613), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 140/468 (29%), Positives = 241/468 (51%), Gaps = 41/468 (8%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P+ VSWN+I+  Y+    +++A+++F +ML  ++ P   T+  V+  CSR  A++ GK I
Sbjct: 226 PSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVI 285

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H   +K+    D  V +S+ +MY K   +  AR+VFD+   +D+ SW S + GYA +G  
Sbjct: 286 HAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLT 345

Query: 124 EVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK------SSVSW----- 172
             A +LFD MP R+  +W A+L G     + + A +    M ++       ++ W     
Sbjct: 346 REARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVC 405

Query: 173 ----------------------------NAMINGYMKSGKINLARQLFGQMPG-RNLISW 203
                                       NA+++ Y K G +  A   F QM   R+ +SW
Sbjct: 406 SGISDVQMGKQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSW 465

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           N++++G    GR  +A+  FE +  E   PS  T+ + L+  + +  L  G+ IH F+++
Sbjct: 466 NALLTGVARVGRSEQALSFFEGMQVEA-KPSKYTLATLLAGCANIPALNLGKAIHGFLIR 524

Query: 264 HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALEL 323
             + +D V+  ++++MYSKC   + A+ VFK  A + L  W +II G   +G + +  EL
Sbjct: 525 DGYKIDVVIRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFEL 584

Query: 324 FMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILC 383
           FM +   G+KP  +TF+G+L AC  +G V+ G + F  M  +Y I P VEHY C++++ C
Sbjct: 585 FMLLENEGVKPDHVTFLGILQACIREGHVELGFQYFSSMSTKYHISPQVEHYDCMIELYC 644

Query: 384 RAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLI 431
           + G L Q +  +  MP  P   +   +  + + +   ++G +AA  L+
Sbjct: 645 KYGCLHQLEEFLLLMPFDPPMQMLTRINDACQRYRWSKLGAWAAKRLM 692



 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 236/489 (48%), Gaps = 74/489 (15%)

Query: 8   SWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           SWN +I+    N  S++   +FR+M    +     +   V+K C  +  ++  +Q+H  V
Sbjct: 129 SWNAVITACAQNGVSDEVFRMFRRMNRDGVRATETSFAGVLKSCGLILDLRLLRQLHCAV 188

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAM 127
           +K G+  +  +++S+V++Y K   M  AR+VFD++V+   VSWN ++  Y   G  + A+
Sbjct: 189 VKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFNDEAV 248

Query: 128 KLFDEM------P------------SR---------------------DAFTWTALLDGL 148
            +F +M      P            SR                     D    T++ D  
Sbjct: 249 VMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSVFDMY 308

Query: 149 AKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMIS 208
            KC ++E+AR VFDQ   K   SW + ++GY  SG    AR+LF  MP RN++SWN+M+ 
Sbjct: 309 VKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWNAMLG 368

Query: 209 GYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL 268
           GY     + EA++   ++ +E     +VT++  L+  SG++ +  G+  H F+ +H +D 
Sbjct: 369 GYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHGFIYRHGYDT 428

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIAN-KKLGHWTAIIVGLGMHGLADQALELFMEM 327
           + ++  +L++MY KCG+++SA   F+ ++  +    W A++ G+   G ++QAL  F  M
Sbjct: 429 NVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALSFFEGM 488

Query: 328 RRIGMKPHAITFIGVLNACS-----------HKGLVDEGNK-----------------CF 359
            ++  KP   T   +L  C+           H  L+ +G K                 CF
Sbjct: 489 -QVEAKPSKYTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVVIRGAMVDMYSKCRCF 547

Query: 360 DMMINEYKIVPTVE--HYGCLVDILCRAGHLQQAKN---IIESMPMRPNKVIWMSLLSSS 414
           D  I  +K   T +   +  ++   CR G  ++      ++E+  ++P+ V ++ +L + 
Sbjct: 548 DYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEGVKPDHVTFLGILQAC 607

Query: 415 RNHGNLEIG 423
              G++E+G
Sbjct: 608 IREGHVELG 616



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 146/298 (48%), Gaps = 15/298 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN ++  YVH H  ++AL     M       D  TL  ++  CS +  VQ G
Sbjct: 355 MPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMG 414

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD-RDVVSWNSLIDGYAR 119
           KQ HG++ + G+  +  V ++L++MY K G +  A   F +M + RD VSWN+L+ G AR
Sbjct: 415 KQAHGFIYRHGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVAR 474

Query: 120 NGNVEVAMKLFDEM-----PSRDAFTWTALLDGLAKCGKVEAAREVFDQM----PKKSSV 170
            G  E A+  F+ M     PS+  +T   LL G A    +   + +   +     K   V
Sbjct: 475 VGRSEQALSFFEGMQVEAKPSK--YTLATLLAGCANIPALNLGKAIHGFLIRDGYKIDVV 532

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
              AM++ Y K    + A ++F +   R+LI WNS+I G   NGR  E  ELF +L  EG
Sbjct: 533 IRGAMVDMYSKCRCFDYAIEVFKEAATRDLILWNSIIRGCCRNGRSKEVFELFMLLENEG 592

Query: 231 LMPSHVTILSALSAV--SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
           + P HVT L  L A    G   LG  ++  S   K+           +IE+Y K G +
Sbjct: 593 VKPDHVTFLGILQACIREGHVELG-FQYFSSMSTKYHISPQVEHYDCMIELYCKYGCL 649



 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 194/441 (43%), Gaps = 45/441 (10%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD 106
           + + CS    V + +++  +++        F+ +  +  Y K G +  AR++F++M +RD
Sbjct: 67  LFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERD 126

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAF--TWTALLDGLAKCGKVEAAREVFDQM 164
             SWN++I   A+NG  +   ++F  M +RD    T T+    L  CG +   R +  Q+
Sbjct: 127 GGSWNAVITACAQNGVSDEVFRMFRRM-NRDGVRATETSFAGVLKSCGLILDLR-LLRQL 184

Query: 165 ---PKKSSVSWN-----AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRF 216
                K   S N     ++++ Y K   ++ AR++F ++   + +SWN ++  Y   G  
Sbjct: 185 HCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDEIVNPSDVSWNVIVRRYLEMGFN 244

Query: 217 LEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSL 276
            EA+ +F  +L+  + P + T+ S + A S    L  G+ IH+  VK     D V+ TS+
Sbjct: 245 DEAVVMFFKMLELNVRPLNHTVSSVMLACSRSLALEVGKVIHAIAVKLSVVADTVVSTSV 304

Query: 277 IEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELF--MEMRRI---- 330
            +MY KC  +ESA  VF    +K L  WT+ + G  M GL  +A ELF  M  R I    
Sbjct: 305 FDMYVKCDRLESARRVFDQTRSKDLKSWTSAMSGYAMSGLTREARELFDLMPERNIVSWN 364

Query: 331 ---GMKPHA----------------------ITFIGVLNACSHKGLVDEGNKCFDMMINE 365
              G   HA                      +T + +LN CS    V  G +     I  
Sbjct: 365 AMLGGYVHAHEWDEALDFLTLMRQEIENIDNVTLVWILNVCSGISDVQMGKQAHG-FIYR 423

Query: 366 YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG-E 424
           +     V     L+D+  + G LQ A      M    ++V W +LL+     G  E    
Sbjct: 424 HGYDTNVIVANALLDMYGKCGTLQSANIWFRQMSELRDEVSWNALLTGVARVGRSEQALS 483

Query: 425 YAAHNLIEADPDATGCYTLLS 445
           +     +EA P      TLL+
Sbjct: 484 FFEGMQVEAKPSKYTLATLLA 504



 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 12/352 (3%)

Query: 121 GNVEVAMKLFDEMPSRDAF-TWTALLDGLAKCGKVEAAREVFDQM----PKKSSVSWNAM 175
           GNV  A+ +    P   ++  +  L    +    V  AR+V   +    P       N  
Sbjct: 43  GNVSKAVSVLFASPEPVSYWLYERLFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNRA 102

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           I  Y K G ++ AR+LF +MP R+  SWN++I+    NG   E   +F  + ++G+  + 
Sbjct: 103 IEAYGKCGCVDDARELFEEMPERDGGSWNAVITACAQNGVSDEVFRMFRRMNRDGVRATE 162

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            +    L +   +  L   R +H  +VK+ +  +  L TS++++Y KC  +  A  VF  
Sbjct: 163 TSFAGVLKSCGLILDLRLLRQLHCAVVKYGYSGNVDLETSIVDVYGKCRVMSDARRVFDE 222

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           I N     W  I+      G  D+A+ +F +M  + ++P   T   V+ ACS + L  E 
Sbjct: 223 IVNPSDVSWNVIVRRYLEMGFNDEAVVMFFKMLELNVRPLNHTVSSVMLACS-RSLALEV 281

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSR 415
            K    +  +  +V        + D+  +   L+ A+ + +    +  K  W S +S   
Sbjct: 282 GKVIHAIAVKLSVVADTVVSTSVFDMYVKCDRLESARRVFDQTRSKDLKS-WTSAMSGYA 340

Query: 416 NHGNLEIGEYAAHNLIEADPDAT-GCYTLLSNIYAAAGKWDKVSHVREMMKE 466
             G        A  L +  P+     +  +   Y  A +WD+      +M++
Sbjct: 341 MSGLTR----EARELFDLMPERNIVSWNAMLGGYVHAHEWDEALDFLTLMRQ 388


>AT3G26630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9791572-9792939 REVERSE
           LENGTH=455
          Length = 455

 Score =  236 bits (601), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/397 (34%), Positives = 211/397 (53%), Gaps = 44/397 (11%)

Query: 48  IKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDV 107
           ++ CS    +   KQIH  ++K     D+ +   L+++ + +GE   A  VF+++     
Sbjct: 27  LRTCSNFSQL---KQIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLVFNQLQSPST 83

Query: 108 VSWNSLIDGYARNGNVEVAMKLFDEM-----PSRDAFTW--------------------- 141
            +WN +I   + N     A+ LF  M        D FT+                     
Sbjct: 84  FTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRLGTQVHG 143

Query: 142 --------------TALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINL 187
                           L+D   KCGK ++ R+VFD+MP +S VSW  M+ G + + +++ 
Sbjct: 144 LAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVSNSQLDS 203

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           A  +F QMP RN++SW +MI+ Y  N R  EA +LF  +  + + P+  TI++ L A + 
Sbjct: 204 AEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNLLQASTQ 263

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
           L  L  GRW+H +  K+ F LD  LGT+LI+MYSKCGS++ A  VF  +  K L  W ++
Sbjct: 264 LGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSLATWNSM 323

Query: 308 IVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           I  LG+HG  ++AL LF EM     ++P AITF+GVL+AC++ G V +G + F  MI  Y
Sbjct: 324 ITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFTRMIQVY 383

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPN 403
            I P  EH  C++ +L +A  +++A N++ESM   P+
Sbjct: 384 GISPIREHNACMIQLLEQALEVEKASNLVESMDSDPD 420



 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 50/338 (14%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLF-RQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           +  P+  +WNL+I     NH+  +ALLLF   M+ H    D FT P VIK C    +++ 
Sbjct: 78  LQSPSTFTWNLMIRSLSVNHKPREALLLFILMMISHQSQFDKFTFPFVIKACLASSSIRL 137

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G Q+HG  +K GF  D F Q++L+++Y K G+    RKVFDKM  R +VSW +++ G   
Sbjct: 138 GTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKVFDKMPGRSIVSWTTMLYGLVS 197

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSV--- 170
           N  ++ A  +F++MP R+  +WTA++    K  + + A ++F +M      P + ++   
Sbjct: 198 NSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQVDDVKPNEFTIVNL 257

Query: 171 -------------SW-----------------NAMINGYMKSGKINLARQLFGQMPGRNL 200
                         W                  A+I+ Y K G +  AR++F  M G++L
Sbjct: 258 LQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVMQGKSL 317

Query: 201 ISWNSMISGYQLNGRFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHS 259
            +WNSMI+   ++G   EA+ LFE + +E  + P  +T +  LSA +    + +G    +
Sbjct: 318 ATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPDAITFVGVLSACANTGNVKDGLRYFT 377

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKC--GSIESALAVFKA 295
            M++       V G S I  ++ C    +E AL V KA
Sbjct: 378 RMIQ-------VYGISPIREHNACMIQLLEQALEVEKA 408


>AT3G28660.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:10739400-10740914 REVERSE
           LENGTH=504
          Length = 504

 Score =  235 bits (600), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 140/504 (27%), Positives = 257/504 (50%), Gaps = 39/504 (7%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMG----LARKVFDKM 102
           +I    R + V++ K  H   +  G   + +  S L+  +     +      A  +FD +
Sbjct: 14  LILASQRCNTVKQIKSTHSLFIIHGLHRNTYAISKLLTAFLHLPNLNKHFHYASSIFDSI 73

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLF-------DEMPSRDAFTWTALLDGLAKCGKVE 155
              +   ++++I   +R+    + ++ F       +E  +    T+  L+    K     
Sbjct: 74  EIPNSFVYDTMIRICSRSSQPHLGLRYFLLMVKEEEEDITPSYLTFHFLIVACLKACFFS 133

Query: 156 AAREVFDQMPKKSSVSWNAMINGYMKSGKINL---------ARQLFGQMPGRNLISWNSM 206
             +++   + K        + +G++++G + +         AR++F ++P  +++ W+ +
Sbjct: 134 VGKQIHCWVVKNGVF----LSDGHVQTGVLRIYVEDKLLFDARKVFDEIPQPDVVKWDVL 189

Query: 207 ISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK-HC 265
           ++GY   G   E +E+F+ +L  G+ P   ++ +AL+A + +  L  G+WIH F+ K   
Sbjct: 190 MNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKWIHEFVKKKRW 249

Query: 266 FDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFM 325
            + D  +GT+L++MY+KCG IE+A+ VF+ +  + +  W A+I G   +G A +A     
Sbjct: 250 IESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYGYAKKATTCLD 309

Query: 326 EMRR-IGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
            + R  G+KP ++  +GVL AC+H G ++EG    + M   Y I P  EHY C+VD++CR
Sbjct: 310 RIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEHYSCIVDLMCR 369

Query: 385 AGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD----PDATGC 440
           AG L  A ++IE MPM+P   +W +LL+  R H N+E+GE A  NL++ +     +    
Sbjct: 370 AGRLDDALDLIEKMPMKPLASVWGALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAA 429

Query: 441 YTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAI 500
              LSNIY +  +  +   VR M+++RG+ K  G S++E  G + +F+ GD SHP    I
Sbjct: 430 LVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQI 489

Query: 501 YAKLREMSKKLKLAGHVPDTSQVL 524
           +  +  +S          D SQ+L
Sbjct: 490 HTLIHLLS---------VDASQIL 504



 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 121/219 (55%), Gaps = 12/219 (5%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +V W+++++ YV     ++ L +F++ML   + PD F++   +  C+++ A+ +GK 
Sbjct: 180 QPDVVKWDVLMNGYVRCGLGSEGLEVFKEMLVRGIEPDEFSVTTALTACAQVGALAQGKW 239

Query: 63  IHGYVLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
           IH +V K  +   D FV ++LV+MYAK G +  A +VF+K+  R+V SW +LI GYA  G
Sbjct: 240 IHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLTRRNVFSWAALIGGYAAYG 299

Query: 122 NVEVAMKLFDEMPSRDAFT--WTALLDGLAKC---GKVEAAREVFDQMPKKSSVS----- 171
             + A    D +   D        LL  LA C   G +E  R + + M  +  ++     
Sbjct: 300 YAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTMLENMEARYGITPKHEH 359

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLIS-WNSMISG 209
           ++ +++   ++G+++ A  L  +MP + L S W ++++G
Sbjct: 360 YSCIVDLMCRAGRLDDALDLIEKMPMKPLASVWGALLNG 398


>AT4G16470.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:9287862-9289541 REVERSE
           LENGTH=501
          Length = 501

 Score =  235 bits (599), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 191/341 (56%)

Query: 179 YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTI 238
           Y  SG +  A  LF  +  R+LI WN+MISGY   G   E + ++  + +  ++P   T 
Sbjct: 153 YALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTF 212

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
            S   A S L  L +G+  H+ M+K C   + ++ ++L++MY KC S      VF  ++ 
Sbjct: 213 ASVFRACSALDRLEHGKRAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLST 272

Query: 299 KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKC 358
           + +  WT++I G G HG   + L+ F +M+  G +P+ +TF+ VL AC+H GLVD+G + 
Sbjct: 273 RNVITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEH 332

Query: 359 FDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           F  M  +Y I P  +HY  +VD L RAG LQ+A   +   P + +  +W SLL + R HG
Sbjct: 333 FYSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHG 392

Query: 419 NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
           N+++ E AA   +E DP   G Y + +N YA+ G  +  S VR  M+  GV KD G S +
Sbjct: 393 NVKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQI 452

Query: 479 EHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPD 519
           E +G+++RF+  D SH  ++ IY K+ EM+       + PD
Sbjct: 453 ELQGEVHRFMKDDTSHRLSEKIYKKVHEMTSFFMDIDYYPD 493



 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 153/299 (51%), Gaps = 15/299 (5%)

Query: 43  TLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM 102
           T   +++ C +     +GK+IH  +  +GF  +++++  L+ +YA  G++  A  +F  +
Sbjct: 110 TYAVLLQECKQRKEYTKGKRIHAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSL 169

Query: 103 VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAR 158
             RD++ WN++I GY + G  +  + ++ +M       D +T+ ++    +   ++E  +
Sbjct: 170 KIRDLIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGK 229

Query: 159 EVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
                M K+    + +  +A+++ Y K    +   ++F Q+  RN+I+W S+ISGY  +G
Sbjct: 230 RAHAVMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHG 289

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL--DGVL 272
           +  E ++ FE + +EG  P+ VT L  L+A +   ++  G W H + +K  + +  +G  
Sbjct: 290 KVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKG-WEHFYSMKRDYGIEPEGQH 348

Query: 273 GTSLIEMYSKCGSIESALA-VFKAIANKKLGHWTAIIVGLGMHG---LADQALELFMEM 327
             ++++   + G ++ A   V K+   +    W +++    +HG   L + A   F+E+
Sbjct: 349 YAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGNVKLLELAATKFLEL 407



 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 10/219 (4%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L+ WN +IS YV      + L ++  M  + ++PD +T   V + CS L  ++ GK+ H 
Sbjct: 174 LIPWNAMISGYVQKGLEQEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHA 233

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            ++K     +  V S+LV+MY K        +VFD++  R+V++W SLI GY  +G V  
Sbjct: 234 VMIKRCIKSNIIVDSALVDMYFKCSSFSDGHRVFDQLSTRNVITWTSLISGYGYHGKVSE 293

Query: 126 AMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMI 176
            +K F++M       +  T+  +L      G V+   E F  M +   +      + AM+
Sbjct: 294 VLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWEHFYSMKRDYGIEPEGQHYAAMV 353

Query: 177 NGYMKSGKINLARQLFGQMPGRNLIS-WNSMISGYQLNG 214
           +   ++G++  A +   + P +     W S++   +++G
Sbjct: 354 DTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHG 392



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 5/223 (2%)

Query: 198 RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWI 257
           R     +  + G  + GR  EA+ L   L   GL     T    L           G+ I
Sbjct: 74  RKTEKLDKTLKGLCVTGRLKEAVGL---LWSSGLQVEPETYAVLLQECKQRKEYTKGKRI 130

Query: 258 HSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLA 317
           H+ M    F L+  L   L+ +Y+  G +++A  +F+++  + L  W A+I G    GL 
Sbjct: 131 HAQMFVVGFALNEYLKVKLLILYALSGDLQTAGILFRSLKIRDLIPWNAMISGYVQKGLE 190

Query: 318 DQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGC 377
            + L ++ +MR+  + P   TF  V  ACS    ++ G +   +MI    I   +     
Sbjct: 191 QEGLFIYYDMRQNRIVPDQYTFASVFRACSALDRLEHGKRAHAVMIKRC-IKSNIIVDSA 249

Query: 378 LVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
           LVD+  +         + + +  R N + W SL+S    HG +
Sbjct: 250 LVDMYFKCSSFSDGHRVFDQLSTR-NVITWTSLISGYGYHGKV 291



 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 15/190 (7%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +++W  +IS Y ++ + ++ L  F +M      P+  T   V+  C+    V +G + H 
Sbjct: 275 VITWTSLISGYGYHGKVSEVLKCFEKMKEEGCRPNPVTFLVVLTACNHGGLVDKGWE-HF 333

Query: 66  YVLKIGFGFDKFVQ--SSLVNMYAKWGEMGLARK-VFDKMVDRDVVSWNSLIDGYARNGN 122
           Y +K  +G +   Q  +++V+   + G +  A + V           W SL+     +GN
Sbjct: 334 YSMKRDYGIEPEGQHYAAMVDTLGRAGRLQEAYEFVMKSPCKEHPPVWGSLLGACRIHGN 393

Query: 123 V---EVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM--------PKKSSVS 171
           V   E+A   F E+   +   +    +G A CG  EAA +V  +M        P  S + 
Sbjct: 394 VKLLELAATKFLELDPTNGGNYVVFANGYASCGLREAASKVRRKMENAGVKKDPGYSQIE 453

Query: 172 WNAMINGYMK 181
               ++ +MK
Sbjct: 454 LQGEVHRFMK 463


>AT1G74400.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:27963953-27965341 FORWARD
           LENGTH=462
          Length = 462

 Score =  233 bits (593), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 124/327 (37%), Positives = 188/327 (57%), Gaps = 12/327 (3%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            +++  Y   G ++ ARQ+F + P + N++ W +MIS Y  N   +EA+ELF+ +  E +
Sbjct: 104 TSLVGFYSSVGDVDYARQVFDETPEKQNIVLWTAMISAYTENENSVEAIELFKRMEAEKI 163

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC--FDLDGVLGTSLIEMYSKCGSIESA 289
               V +  ALSA + L  +  G  I+S  +K      +D  L  SL+ MY K G  E A
Sbjct: 164 ELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKA 223

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG------MKPHAITFIGVL 343
             +F     K +  +T++I G  ++G A ++LELF +M+ I       + P+ +TFIGVL
Sbjct: 224 RKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFIGVL 283

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPN 403
            ACSH GLV+EG + F  MI +Y + P   H+GC+VD+ CR+GHL+ A   I  MP++PN
Sbjct: 284 MACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPIKPN 343

Query: 404 KVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREM 463
            VIW +LL +   HGN+E+GE     + E D D  G Y  LSNIYA+ G WD+ S +R+ 
Sbjct: 344 TVIWRTLLGACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDR 403

Query: 464 MKERGVLKDAGCSIVEHRGKLNRFIVG 490
           +++R +    G S +E    +N F+ G
Sbjct: 404 VRKRRM---PGKSWIELGSIINEFVSG 427



 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 177/383 (46%), Gaps = 29/383 (7%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHD-LLPDGFTLPCVIKGCSRLHAVQ-E 59
           H  +L S N  +  Y+ +     ALL FR          D F++   IK  S   A   +
Sbjct: 25  HTKSLKS-NHTLKQYLESGEPIKALLDFRHRFRQSPSFVDSFSVLFAIKVSSAQKASSLD 83

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-DVVSWNSLIDGYA 118
           G+QIH  V K+GF     +Q+SLV  Y+  G++  AR+VFD+  ++ ++V W ++I  Y 
Sbjct: 84  GRQIHALVRKLGFNAVIQIQTSLVGFYSSVGDVDYARQVFDETPEKQNIVLWTAMISAYT 143

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----- 169
            N N   A++LF  M +     D    T  L   A  G V+   E++ +  K+       
Sbjct: 144 ENENSVEAIELFKRMEAEKIELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMD 203

Query: 170 -VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVL-- 226
               N+++N Y+KSG+   AR+LF +   +++ ++ SMI GY LNG+  E++ELF+ +  
Sbjct: 204 LTLRNSLLNMYVKSGETEKARKLFDESMRKDVTTYTSMIFGYALNGQAQESLELFKKMKT 263

Query: 227 ----LKEGLMPSHVTILSALSAVSGLAVLGNG-RWIHSFMVKHCFDLDGVLGTSLIEMYS 281
                   + P+ VT +  L A S   ++  G R   S ++ +           +++++ 
Sbjct: 264 IDQSQDTVITPNDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFC 323

Query: 282 KCGSIESALAVFKAIANK-KLGHWTAIIVGLGMHG---LADQALELFMEMRRIGMKPHAI 337
           + G ++ A      +  K     W  ++    +HG   L ++      E+ R     H  
Sbjct: 324 RSGHLKDAHEFINQMPIKPNTVIWRTLLGACSLHGNVELGEEVQRRIFELDR----DHVG 379

Query: 338 TFIGVLNACSHKGLVDEGNKCFD 360
            ++ + N  + KG+ DE +K  D
Sbjct: 380 DYVALSNIYASKGMWDEKSKMRD 402


>AT1G09220.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2977952-2979466 REVERSE
           LENGTH=504
          Length = 504

 Score =  233 bits (593), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/346 (37%), Positives = 194/346 (56%), Gaps = 5/346 (1%)

Query: 138 AFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPG 197
            +  TAL+      G +  A +VFD+MP+++ V+WN MI G    G    A     +MP 
Sbjct: 158 VYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPN 217

Query: 198 RNLISWNSMISGYQLNGRFLEAMELFEVLLK-EGLMPSHVTILSALSAVSGLAVLGNGRW 256
           R ++SW ++I GY    +  EA+ LF  ++  + + P+ +TIL+ L AV  L  L     
Sbjct: 218 RTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGS 277

Query: 257 IHSFMVKHCF-DLDGVLGTSLIEMYSKCGSIESALAVFKAIAN--KKLGHWTAIIVGLGM 313
           +H+++ K  F   D  +  SLI+ Y+KCG I+SA   F  I N  K L  WT +I    +
Sbjct: 278 VHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAI 337

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN-KCFDMMINEYKIVPTV 372
           HG+  +A+ +F +M R+G+KP+ +T I VLNACSH GL +E   + F+ M+NEYKI P V
Sbjct: 338 HGMGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDV 397

Query: 373 EHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE 432
           +HYGCLVD+L R G L++A+ I   +P+    V+W  LL +   + + E+ E     L+E
Sbjct: 398 KHYGCLVDMLRRKGRLEEAEKIALEIPIEEKAVVWRMLLGACSVYDDAELAERVTRKLME 457

Query: 433 ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
            +    G Y L+SNI+   G++      R+ M  RGV K  G S V
Sbjct: 458 LERSHGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 181/384 (47%), Gaps = 60/384 (15%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQML-------HHDLLP--DGFTLPCVIKGCS--RL 54
           L  +N ++ CY        A  L+ Q+        H+  LP  D FT   ++K  S  R 
Sbjct: 77  LFLFNPLLRCYSLGETPLHAYFLYDQLQRLHFLSDHNKSLPPFDSFTYLFLLKASSNPRF 136

Query: 55  HAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLI 114
            ++  G  +HG  LK+GF    +VQ++LV MY   G M  A KVFD+M +R+ V+WN +I
Sbjct: 137 PSLLLGIGLHGLTLKLGFESHVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMI 196

Query: 115 DGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM-------PKK 167
            G    G+ E A+   ++MP+R   +WT ++DG A+  K + A  +F +M       P +
Sbjct: 197 TGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNE 256

Query: 168 SSV------SW----------------------------NAMINGYMKSGKINLARQLFG 193
            ++       W                            N++I+ Y K G I  A + F 
Sbjct: 257 ITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFI 316

Query: 194 QMPG--RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS--GLA 249
           ++P   +NL+SW +MIS + ++G   EA+ +F+ + + GL P+ VT++S L+A S  GLA
Sbjct: 317 EIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLA 376

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA-NKKLGHWTAII 308
                 + ++ + ++    D      L++M  + G +E A  +   I   +K   W  ++
Sbjct: 377 EEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEEAEKIALEIPIEEKAVVWRMLL 436

Query: 309 VGLGMHG---LADQALELFMEMRR 329
               ++    LA++     ME+ R
Sbjct: 437 GACSVYDDAELAERVTRKLMELER 460



 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 107/212 (50%), Gaps = 18/212 (8%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQE 59
           M   T+VSW  II  Y    +  +A+LLF +M+  D + P+  T+  ++     L  ++ 
Sbjct: 215 MPNRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKM 274

Query: 60  GKQIHGYVLKIGF-GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD--RDVVSWNSLIDG 116
              +H YV K GF   D  V +SL++ YAK G +  A K F ++ +  +++VSW ++I  
Sbjct: 275 CGSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISA 334

Query: 117 YARNGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAA-REVFDQMPKKSS 169
           +A +G  + A+ +F +M      P+R   T  ++L+  +  G  E    E F+ M  +  
Sbjct: 335 FAIHGMGKEAVSMFKDMERLGLKPNR--VTMISVLNACSHGGLAEEEFLEFFNTMVNEYK 392

Query: 170 VS-----WNAMINGYMKSGKINLARQLFGQMP 196
           ++     +  +++   + G++  A ++  ++P
Sbjct: 393 ITPDVKHYGCLVDMLRRKGRLEEAEKIALEIP 424


>AT1G77170.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:28998133-28999536 REVERSE
           LENGTH=467
          Length = 467

 Score =  232 bits (592), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 115/301 (38%), Positives = 182/301 (60%), Gaps = 2/301 (0%)

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +  I  Y K+G+   AR++F + P R L SWN++I G    GR  EA+E+F  + + GL 
Sbjct: 156 SGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLE 215

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHS--FMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           P   T++S  ++  GL  L     +H      K     D ++  SLI+MY KCG ++ A 
Sbjct: 216 PDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLAS 275

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
            +F+ +  + +  W+++IVG   +G   +ALE F +MR  G++P+ ITF+GVL+AC H G
Sbjct: 276 HIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGG 335

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
           LV+EG   F MM +E+++ P + HYGC+VD+L R G L++AK ++E MPM+PN ++W  L
Sbjct: 336 LVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCL 395

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           +      G++E+ E+ A  ++E +P   G Y +L+N+YA  G W  V  VR++MK + V 
Sbjct: 396 MGGCEKFGDVEMAEWVAPYMVELEPWNDGVYVVLANVYALRGMWKDVERVRKLMKTKKVA 455

Query: 471 K 471
           K
Sbjct: 456 K 456



 Score =  155 bits (393), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 166/308 (53%), Gaps = 13/308 (4%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P    WN I+  Y+ +    DA+ ++  M+   +LPD ++LP VIK   ++H    GK++
Sbjct: 80  PIAFLWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKEL 139

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           H   +++GF  D+F +S  + +Y K GE   ARKVFD+  +R + SWN++I G    G  
Sbjct: 140 HSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRA 199

Query: 124 EVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFD-----QMPKKSSV-SWN 173
             A+++F +M       D FT  ++       G +  A ++       +  +KS +   N
Sbjct: 200 NEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLN 259

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           ++I+ Y K G+++LA  +F +M  RN++SW+SMI GY  NG  LEA+E F  + + G+ P
Sbjct: 260 SLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRP 319

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG--TSLIEMYSKCGSIESALA 291
           + +T +  LSA     ++  G+  +  M+K  F+L+  L     ++++ S+ G ++ A  
Sbjct: 320 NKITFVGVLSACVHGGLVEEGK-TYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKK 378

Query: 292 VFKAIANK 299
           V + +  K
Sbjct: 379 VVEEMPMK 386



 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 6/220 (2%)

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           WN+++  Y  +   L+A++++  +++  ++P   ++   + A   +     G+ +HS  V
Sbjct: 85  WNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVAV 144

Query: 263 KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALE 322
           +  F  D    +  I +Y K G  E+A  VF     +KLG W AII GL   G A++A+E
Sbjct: 145 RLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVE 204

Query: 323 LFMEMRRIGMKPHAITFIGVLNACSHKG---LVDEGNKCFDMMINEYKIVPTVEHYGCLV 379
           +F++M+R G++P   T + V  +C   G   L  + +KC      E K    +     L+
Sbjct: 205 MFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEK--SDIMMLNSLI 262

Query: 380 DILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           D+  + G +  A +I E M  R N V W S++     +GN
Sbjct: 263 DMYGKCGRMDLASHIFEEMRQR-NVVSWSSMIVGYAANGN 301



 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 4/129 (3%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSW+ +I  Y  N  + +AL  FRQM    + P+  T   V+  C     V+EG
Sbjct: 281 MRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEG 340

Query: 61  KQIHGYVLKIGFGFDKFVQ--SSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGY 117
           K     ++K  F  +  +     +V++ ++ G++  A+KV ++M +  +V+ W  L+ G 
Sbjct: 341 KTYFA-MMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGC 399

Query: 118 ARNGNVEVA 126
            + G+VE+A
Sbjct: 400 EKFGDVEMA 408


>AT3G51320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19049853-19051445 REVERSE
           LENGTH=530
          Length = 530

 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/332 (34%), Positives = 196/332 (59%), Gaps = 3/332 (0%)

Query: 151 CGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGY 210
           CG ++ A+++F ++PK+  VSWN++I G +++G +  A +LF +MP +N+ISWN MIS Y
Sbjct: 166 CGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNIISWNIMISAY 225

Query: 211 QLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG 270
                   ++ LF  +++ G   +  T++  L+A    A L  GR +H+ +++   +   
Sbjct: 226 LGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHASLIRTFLNSSV 285

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRI 330
           V+ T+LI+MY KC  +  A  +F +++ +    W  +I+   +HG  +  LELF  M   
Sbjct: 286 VIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGGLELFEAMING 345

Query: 331 GMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQ 390
            ++P  +TF+GVL  C+  GLV +G   + +M++E++I P   H  C+ ++   AG  ++
Sbjct: 346 MLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPNFGHQWCMANLYSSAGFPEE 405

Query: 391 AKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNI 447
           A+  ++++P   + P    W +LLSSSR  GN  +GE  A +LIE DP     Y LL NI
Sbjct: 406 AEEALKNLPDEDVTPESTKWANLLSSSRFTGNPTLGESIAKSLIETDPLNYKYYHLLMNI 465

Query: 448 YAAAGKWDKVSHVREMMKERGVLKDAGCSIVE 479
           Y+  G+W+ V+ VREM+KER + +  GC +V+
Sbjct: 466 YSVTGRWEDVNRVREMVKERKIGRIPGCGLVD 497



 Score =  135 bits (340), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 42/333 (12%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLK 69
           N +   Y+ +     AL  +  +L    +PD +T   +I    +   V  GK  HG  +K
Sbjct: 87  NPVFKAYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIK 146

Query: 70  IGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKL 129
            G      VQ+SL++MY   G + LA+K+F ++  RD+VSWNS+I G  RNG+V  A KL
Sbjct: 147 HGCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKL 206

Query: 130 FDEMPSRDAFTWTA-----------------------------------LLDGLAKCGKV 154
           FDEMP ++  +W                                     LL+   +  ++
Sbjct: 207 FDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARL 266

Query: 155 EAAREVFDQMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGY 210
           +  R V   + +     S V   A+I+ Y K  ++ LAR++F  +  RN ++WN MI  +
Sbjct: 267 KEGRSVHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAH 326

Query: 211 QLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG 270
            L+GR    +ELFE ++   L P  VT +  L   +   ++  G+  +S MV   F +  
Sbjct: 327 CLHGRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDE-FQIKP 385

Query: 271 VLGTS--LIEMYSKCGSIESALAVFKAIANKKL 301
             G    +  +YS  G  E A    K + ++ +
Sbjct: 386 NFGHQWCMANLYSSAGFPEEAEEALKNLPDEDV 418



 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 111/227 (48%), Gaps = 13/227 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    ++SWN++IS Y+  +    ++ LFR+M+      +  TL  ++  C R   ++EG
Sbjct: 210 MPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEG 269

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H  +++        + ++L++MY K  E+GLAR++FD +  R+ V+WN +I  +  +
Sbjct: 270 RSVHASLIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLH 329

Query: 121 GNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN--- 173
           G  E  ++LF+ M +     D  T+  +L G A+ G V   +  +  M  +  +  N   
Sbjct: 330 GRPEGGLELFEAMINGMLRPDEVTFVGVLCGCARAGLVSQGQSYYSLMVDEFQIKPNFGH 389

Query: 174 --AMINGYMKSGKINLARQLFGQMPGRNLIS----WNSMISGYQLNG 214
              M N Y  +G    A +    +P  ++      W +++S  +  G
Sbjct: 390 QWCMANLYSSAGFPEEAEEALKNLPDEDVTPESTKWANLLSSSRFTG 436



 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 115/266 (43%), Gaps = 37/266 (13%)

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           N +   Y ++    +A+  +  +L+ G +P   T +S +S +     + +G+  H   +K
Sbjct: 87  NPVFKAYLVSSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIK 146

Query: 264 HCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVG-------LGMHGL 316
           H  D    +  SL+ MY+ CG+++ A  +F  I  + +  W +II G       L  H L
Sbjct: 147 HGCDQVLPVQNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKL 206

Query: 317 ADQ------------------------ALELFMEMRRIGMKPHAITFIGVLNACSHKGLV 352
            D+                        ++ LF EM R G + +  T + +LNAC     +
Sbjct: 207 FDEMPDKNIISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARL 266

Query: 353 DEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLS 412
            EG      +I  + +  +V     L+D+  +   +  A+ I +S+ +R NKV W  ++ 
Sbjct: 267 KEGRSVHASLIRTF-LNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIR-NKVTWNVMIL 324

Query: 413 S----SRNHGNLEIGEYAAHNLIEAD 434
           +     R  G LE+ E   + ++  D
Sbjct: 325 AHCLHGRPEGGLELFEAMINGMLRPD 350


>AT1G43980.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:16687637-16689502 REVERSE
           LENGTH=621
          Length = 621

 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 147/497 (29%), Positives = 258/497 (51%), Gaps = 14/497 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  +VSWN +IS  V        + +F  M   ++ P  FT   +    S +  V+ G
Sbjct: 96  MPERDVVSWNTMISGLVSCGFHEYGIRVFFDMQRWEIRPTEFTFSIL---ASLVTCVRHG 152

Query: 61  KQIHGYVLKIGFG-FDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           +QIHG  +  G   ++  V +S+++MY + G    A  VF  M DRDVVSWN LI   + 
Sbjct: 153 EQIHGNAICSGVSRYNLVVWNSVMDMYRRLGVFDYALSVFLTMEDRDVVSWNCLILSCSD 212

Query: 120 NGNVEVAMKLF---DEMPSR-DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
           +GN EVA+  F    EM  + D +T + ++   +   ++   ++      K     +S+ 
Sbjct: 213 SGNKEVALDQFWLMREMEIQPDEYTVSMVVSICSDLRELSKGKQALALCIKMGFLSNSIV 272

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
             A I+ + K  +++ + +LF ++   + +  NSMI  Y  +    +A+ LF + + + +
Sbjct: 273 LGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCNSMIGSYSWHCCGEDALRLFILAMTQSV 332

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P   T  S LS+++ + +L +G  +HS ++K  FDLD  + TSL+EMY K GS++ A+ 
Sbjct: 333 RPDKFTFSSVLSSMNAV-MLDHGADVHSLVIKLGFDLDTAVATSLMEMYFKTGSVDLAMG 391

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM-RRIGMKPHAITFIGVLNACSHKG 350
           VF     K L  W  +I+GL  +  A ++L +F ++     +KP  +T +G+L AC + G
Sbjct: 392 VFAKTDGKDLIFWNTVIMGLARNSRAVESLAIFNQLLMNQSLKPDRVTLMGILVACCYAG 451

Query: 351 LVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSL 410
            V+EG + F  M   + + P  EHY C++++LCR G + +AK+I + +P  P+  IW  +
Sbjct: 452 FVNEGIQIFSSMEKAHGVNPGNEHYACIIELLCRVGMINEAKDIADKIPFEPSSHIWEPI 511

Query: 411 LSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL 470
           L +S + G+  + E  A  ++E++P ++  Y +L  IY    +W+    +R  M E  + 
Sbjct: 512 LCASLDLGDTRLAETVAKTMLESEPKSSFPYLVLIKIYEMTWRWENSVKLRYAMNEHKLK 571

Query: 471 KDAGCSIVEHRGKLNRF 487
              G S +     +  F
Sbjct: 572 SAQGSSKISIESSVFSF 588



 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 37/323 (11%)

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
            K +H  +L+ GF    +  +  + +Y K G +  A ++FD + D++ ++WN  + G  +
Sbjct: 23  AKIVHAQLLEAGFVRTTYWGNRCLQLYFKSGSVINALQLFDDIPDKNTITWNVCLKGLFK 82

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVS-- 171
           NG +  A+ LFDEMP RD  +W  ++ GL  CG  E    VF  M      P + + S  
Sbjct: 83  NGYLNNALDLFDEMPERDVVSWNTMISGLVSCGFHEYGIRVFFDMQRWEIRPTEFTFSIL 142

Query: 172 -----------------------------WNAMINGYMKSGKINLARQLFGQMPGRNLIS 202
                                        WN++++ Y + G  + A  +F  M  R+++S
Sbjct: 143 ASLVTCVRHGEQIHGNAICSGVSRYNLVVWNSVMDMYRRLGVFDYALSVFLTMEDRDVVS 202

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV 262
           WN +I     +G    A++ F ++ +  + P   T+   +S  S L  L  G+   +  +
Sbjct: 203 WNCLILSCSDSGNKEVALDQFWLMREMEIQPDEYTVSMVVSICSDLRELSKGKQALALCI 262

Query: 263 KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALE 322
           K  F  + ++  + I+M+SKC  ++ ++ +F+ +         ++I     H   + AL 
Sbjct: 263 KMGFLSNSIVLGAGIDMFSKCNRLDDSVKLFRELEKWDSVLCNSMIGSYSWHCCGEDALR 322

Query: 323 LFMEMRRIGMKPHAITFIGVLNA 345
           LF+      ++P   TF  VL++
Sbjct: 323 LFILAMTQSVRPDKFTFSSVLSS 345


>AT3G18840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:6496198-6498234 FORWARD
           LENGTH=678
          Length = 678

 Score =  227 bits (578), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 164/586 (27%), Positives = 282/586 (48%), Gaps = 81/586 (13%)

Query: 6   LVSWNLIISCYVHNHR-SNDALLLFRQM---LHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           L+++N ++S +       ++A+ +F +M      D+  D FT+  ++K  ++L  V  G+
Sbjct: 86  LITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKDDIWIDDFTVTTMVKLSAKLTNVFYGE 145

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFD----KMVD------------- 104
           Q+HG ++K G    KF  SSL++MY+K G+      +F+    + VD             
Sbjct: 146 QLHGVLVKTGNDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCR 205

Query: 105 -----------------RDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTA 143
                             D +SWN+LI GYA+NG  E A+K+   M       D  ++ A
Sbjct: 206 EGDIDKALSVFWRNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGA 265

Query: 144 LLDGLAKCGKVEAAREVFDQMPKKSSVS-------------------------------- 171
           +L+ L+    ++  +EV  ++ K  S S                                
Sbjct: 266 VLNVLSSLKSLKIGKEVHARVLKNGSYSNKFVSSGIVDVYCKCGNMKYAESAHLLYGFGN 325

Query: 172 ---WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA-MELFEVLL 227
               ++MI GY   GK+  A++LF  +  +NL+ W +M  GY LN R  ++ +EL    +
Sbjct: 326 LYSASSMIVGYSSQGKMVEAKRLFDSLSEKNLVVWTAMFLGY-LNLRQPDSVLELARAFI 384

Query: 228 -KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
             E   P  + ++S L A S  A +  G+ IH   ++    +D  L T+ ++MYSKCG++
Sbjct: 385 ANETNTPDSLVMVSVLGACSLQAYMEPGKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNV 444

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           E A  +F +   +    + A+I G   HG   ++ + F +M   G KP  ITF+ +L+AC
Sbjct: 445 EYAERIFDSSFERDTVMYNAMIAGCAHHGHEAKSFQHFEDMTEGGFKPDEITFMALLSAC 504

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM-PMRPNKV 405
            H+GLV EG K F  MI  Y I P   HY C++D+  +A  L +A  ++E +  +  + V
Sbjct: 505 RHRGLVLEGEKYFKSMIEAYNISPETGHYTCMIDLYGKAYRLDKAIELMEGIDQVEKDAV 564

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
           I  + L++   + N E+ +     L+  +      Y  ++N YA++G+WD++  +R  M+
Sbjct: 565 ILGAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRHQMR 624

Query: 466 ERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKL 511
            + +   +GCS      + + F   D SH +T+AIYA L  ++K L
Sbjct: 625 GKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAMLHFVTKDL 670



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 162/346 (46%), Gaps = 36/346 (10%)

Query: 54  LHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSL 113
           +  +++G   H   +K G        + LVN+Y+K G +  AR VFD+M++R+V SWN++
Sbjct: 1   MKCLKDGFLHHIRSIKSGSTLTAVSSNQLVNLYSKSGLLREARNVFDEMLERNVYSWNAV 60

Query: 114 IDGYARNGNVEVAMKLFD-EMPSRDAFTWTALLDGLAKCGKVEA-AREVFDQMPKKSSVS 171
           I  Y +  NV+ A +LF+ +   RD  T+  LL G AK    E+ A E+F +M +K    
Sbjct: 61  IAAYVKFNNVKEARELFESDNCERDLITYNTLLSGFAKTDGCESEAIEMFGEMHRKEKD- 119

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            +  I+ +  +  + L+ +L             ++  G QL+G          VL+K G 
Sbjct: 120 -DIWIDDFTVTTMVKLSAKL------------TNVFYGEQLHG----------VLVKTG- 155

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD-LDGVLGTSLIEMYSKCGSIESAL 290
             +  T  +  S +   +  G  + + +     C + +D V   ++I  Y + G I+ AL
Sbjct: 156 --NDGTKFAVSSLIHMYSKCGKFKEVCNIFNGSCVEFVDSVARNAMIAAYCREGDIDKAL 213

Query: 291 AVFKAIANKKLGH---WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           +VF    N +L     W  +I G   +G  ++AL++ + M   G+K    +F  VLN  S
Sbjct: 214 SVF--WRNPELNDTISWNTLIAGYAQNGYEEEALKMAVSMEENGLKWDEHSFGAVLNVLS 271

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKN 393
               +  G +    ++            G +VD+ C+ G+++ A++
Sbjct: 272 SLKSLKIGKEVHARVLKNGSYSNKFVSSG-IVDVYCKCGNMKYAES 316



 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 13/224 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQE 59
           + +  LV W  +   Y++  + +  L L R  + ++   PD   +  V+  CS    ++ 
Sbjct: 352 LSEKNLVVWTAMFLGYLNLRQPDSVLELARAFIANETNTPDSLVMVSVLGACSLQAYMEP 411

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           GK+IHG+ L+ G   DK + ++ V+MY+K G +  A ++FD   +RD V +N++I G A 
Sbjct: 412 GKEIHGHSLRTGILMDKKLVTAFVDMYSKCGNVEYAERIFDSSFERDTVMYNAMIAGCAH 471

Query: 120 NGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           +G+   + + F++M       D  T+ ALL      G V    + F  M +  ++S    
Sbjct: 472 HGHEAKSFQHFEDMTEGGFKPDEITFMALLSACRHRGLVLEGEKYFKSMIEAYNISPETG 531

Query: 172 -WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNG 214
            +  MI+ Y K+ +++ A +L   M G + +  +++I G  LN 
Sbjct: 532 HYTCMIDLYGKAYRLDKAIEL---MEGIDQVEKDAVILGAFLNA 572


>AT1G03510.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:876258-877547 REVERSE
           LENGTH=429
          Length = 429

 Score =  223 bits (568), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/343 (34%), Positives = 192/343 (55%), Gaps = 4/343 (1%)

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMP 196
           + F   ALLD   KC  V  AR++FD++P++++V WNAMI+ Y   GK+  A +L+  M 
Sbjct: 82  NPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVKEAVELYEAMD 141

Query: 197 -GRNLISWNSMISGY--QLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN 253
              N  S+N++I G     +G +  A+E +  +++    P+ +T+L+ +SA S +     
Sbjct: 142 VMPNESSFNAIIKGLVGTEDGSY-RAIEFYRKMIEFRFKPNLITLLALVSACSAIGAFRL 200

Query: 254 GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGM 313
            + IHS+  ++  +    L + L+E Y +CGSI     VF ++ ++ +  W+++I    +
Sbjct: 201 IKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAWSSLISAYAL 260

Query: 314 HGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE 373
           HG A+ AL+ F EM    + P  I F+ VL ACSH GL DE    F  M  +Y +  + +
Sbjct: 261 HGDAESALKTFQEMELAKVTPDDIAFLNVLKACSHAGLADEALVYFKRMQGDYGLRASKD 320

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
           HY CLVD+L R G  ++A  +I++MP +P    W +LL + RN+G +E+ E AA  L+  
Sbjct: 321 HYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALLGACRNYGEIELAEIAARELLMV 380

Query: 434 DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCS 476
           +P+    Y LL  IY + G+ ++   +R  MKE GV    G S
Sbjct: 381 EPENPANYVLLGKIYMSVGRQEEAERLRLKMKESGVKVSPGSS 423



 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 46/348 (13%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLP-DGFTLPCVIKGCSRLHAVQEGKQIH 64
           L+S    +S Y +      AL LF QM     LP D       +K C+       G  +H
Sbjct: 12  LISLTKQLSSYANQGNHEQALNLFLQMHSSFALPLDAHVFSLALKSCAAAFRPVLGGSVH 71

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVE 124
            + +K  F  + FV  +L++MY K   +  ARK+FD++  R+ V WN++I  Y   G V+
Sbjct: 72  AHSVKSNFLSNPFVGCALLDMYGKCLSVSHARKLFDEIPQRNAVVWNAMISHYTHCGKVK 131

Query: 125 VAMKLF---DEMPSRDAF----------------------------------TWTALLDG 147
            A++L+   D MP+  +F                                  T  AL+  
Sbjct: 132 EAVELYEAMDVMPNESSFNAIIKGLVGTEDGSYRAIEFYRKMIEFRFKPNLITLLALVSA 191

Query: 148 LAKCGKVEAAREV----FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISW 203
            +  G     +E+    F  + +      + ++  Y + G I   + +F  M  R++++W
Sbjct: 192 CSAIGAFRLIKEIHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSMEDRDVVAW 251

Query: 204 NSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK 263
           +S+IS Y L+G    A++ F+ +    + P  +  L+ L A S  A L +   ++   ++
Sbjct: 252 SSLISAYALHGDAESALKTFQEMELAKVTPDDIAFLNVLKACSH-AGLADEALVYFKRMQ 310

Query: 264 HCFDLDGVLG--TSLIEMYSKCGSIESALAVFKAIANKKLGH-WTAII 308
             + L       + L+++ S+ G  E A  V +A+  K     W A++
Sbjct: 311 GDYGLRASKDHYSCLVDVLSRVGRFEEAYKVIQAMPEKPTAKTWGALL 358


>AT4G14170.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:8176709-8178142 REVERSE
           LENGTH=477
          Length = 477

 Score =  221 bits (562), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/411 (31%), Positives = 226/411 (54%), Gaps = 11/411 (2%)

Query: 78  VQSSLVNMYAKWGEM-GLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM--- 133
           + S LV  Y+K   +   +  VF  M  R++ SWN +I  ++R+G    ++ LF  M   
Sbjct: 68  LSSKLVLAYSKLNHLFPTSLSVFWHMPYRNIFSWNIIIGEFSRSGFASKSIDLFLRMWRE 127

Query: 134 --PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMKSGKINL 187
                D FT   +L   +   + ++   +     K     S    +A++  Y+  GK+  
Sbjct: 128 SCVRPDDFTLPLILRACSASREAKSGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLH 187

Query: 188 ARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSG 247
           AR+LF  MP R+ + + +M  GY   G  +  + +F  +   G     V ++S L A   
Sbjct: 188 ARKLFDDMPVRDSVLYTAMFGGYVQQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQ 247

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAI 307
           L  L +G+ +H + ++ C  L   LG ++ +MY KC  ++ A  VF  ++ + +  W+++
Sbjct: 248 LGALKHGKSVHGWCIRRCSCLGLNLGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSL 307

Query: 308 IVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK 367
           I+G G+ G    + +LF EM + G++P+A+TF+GVL+AC+H GLV++    F +M  EY 
Sbjct: 308 ILGYGLDGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSWLYFRLM-QEYN 366

Query: 368 IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAA 427
           IVP ++HY  + D + RAG L++A+  +E MP++P++ +  ++LS  + +GN+E+GE  A
Sbjct: 367 IVPELKHYASVADCMSRAGLLEEAEKFLEDMPVKPDEAVMGAVLSGCKVYGNVEVGERVA 426

Query: 428 HNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIV 478
             LI+  P     Y  L+ +Y+AAG++D+   +R+ MKE+ + K  GCS +
Sbjct: 427 RELIQLKPRKASYYVTLAGLYSAAGRFDEAESLRQWMKEKQISKVPGCSSI 477



 Score =  140 bits (352), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/409 (27%), Positives = 196/409 (47%), Gaps = 49/409 (11%)

Query: 2   HKP--TLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQ 58
           H P   + SWN+II  +  +  ++ ++ LF +M     + PD FTLP +++ CS     +
Sbjct: 92  HMPYRNIFSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILRACSASREAK 151

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
            G  IH   LK+GF    FV S+LV MY   G++  ARK+FD M  RD V + ++  GY 
Sbjct: 152 SGDLIHVLCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLFDDMPVRDSVLYTAMFGGYV 211

Query: 119 RNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV---- 170
           + G   + + +F EM     + D+    +LL    + G ++  + V     ++ S     
Sbjct: 212 QQGEAMLGLAMFREMGYSGFALDSVVMVSLLMACGQLGALKHGKSVHGWCIRRCSCLGLN 271

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
             NA+ + Y+K   ++ A  +F  M  R++ISW+S+I GY L+G  + + +LF+ +LKEG
Sbjct: 272 LGNAITDMYVKCSILDYAHTVFVNMSRRDVISWSSLILGYGLDGDVVMSFKLFDEMLKEG 331

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           + P+ VT L  LSA +           H  +V+  +     L   L++ Y+         
Sbjct: 332 IEPNAVTFLGVLSACA-----------HGGLVEKSW-----LYFRLMQEYNIV------- 368

Query: 291 AVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKG 350
                    +L H+ ++   +   GL ++A E F+E   + +KP       VL+ C   G
Sbjct: 369 --------PELKHYASVADCMSRAGLLEEA-EKFLE--DMPVKPDEAVMGAVLSGCKVYG 417

Query: 351 LVDEGNKCFDMMINEYKIVP-TVEHYGCLVDILCRAGHLQQAKNIIESM 398
            V+ G +    +I   ++ P    +Y  L  +   AG   +A+++ + M
Sbjct: 418 NVEVGERVARELI---QLKPRKASYYVTLAGLYSAAGRFDEAESLRQWM 463


>AT3G58590.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:21666262-21668487 FORWARD
           LENGTH=741
          Length = 741

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/443 (31%), Positives = 217/443 (48%), Gaps = 39/443 (8%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +VSWN II     +     AL LF  M  H   P+  T   V+   S +  +  G+QIHG
Sbjct: 281 IVSWNAIICATAKSENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHG 340

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            ++K G      + ++L++ YAK G +  +R  FD + D+++V WN+L+ GYA N +  +
Sbjct: 341 MLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSGYA-NKDGPI 399

Query: 126 AMKLFDEM------PSRDAFT-----------------------------WTALLDGLAK 150
            + LF +M      P+   F+                              ++L+   AK
Sbjct: 400 CLSLFLQMLQMGFRPTEYTFSTALKSCCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAK 459

Query: 151 CGKVEAAREVFDQMPKKSSVSWNAMING-YMKSGKINLARQLFGQMPGRNLISWNSMISG 209
              +  A  + D     +SV    ++ G Y + G+ + + +L   +   + +SWN  I+ 
Sbjct: 460 NQLMNDALLLLDWASGPTSVVPLNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAA 519

Query: 210 YQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL- 268
              +    E +ELF+ +L+  + P   T +S LS  S L  L  G  IH  + K  F   
Sbjct: 520 CSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCA 579

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMR 328
           D  +   LI+MY KCGSI S + VF+    K L  WTA+I  LG+HG   +ALE F E  
Sbjct: 580 DTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALISCLGIHGYGQEALEKFKETL 639

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHL 388
            +G KP  ++FI +L AC H G+V EG   F  M  +Y + P ++HY C VD+L R G+L
Sbjct: 640 SLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM-KDYGVEPEMDHYRCAVDLLARNGYL 698

Query: 389 QQAKNIIESMPMRPNKVIWMSLL 411
           ++A+++I  MP   +  +W + L
Sbjct: 699 KEAEHLIREMPFPADAPVWRTFL 721



 Score =  140 bits (354), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 179/350 (51%), Gaps = 14/350 (4%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY 66
           VS+N II  Y      + A  +F +M +   LP+  T+  ++  C+ L  V+ G Q+HG 
Sbjct: 81  VSFNTIIKGYSKYGDVDKAWGVFSEMRYFGYLPNQSTVSGLLS-CASLD-VRAGTQLHGL 138

Query: 67  VLKIG-FGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
            LK G F  D FV + L+ +Y +   + +A +VF+ M  + + +WN ++      G ++ 
Sbjct: 139 SLKYGLFMADAFVGTCLLCLYGRLDLLEMAEQVFEDMPFKSLETWNHMMSLLGHRGFLKE 198

Query: 126 AMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-----SVSWNAMI 176
            M  F E+     S    ++  +L G++    ++ ++++     KK      SV  N++I
Sbjct: 199 CMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDISKQLHCSATKKGLDCEISVV-NSLI 257

Query: 177 NGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHV 236
           + Y K G  ++A ++F      +++SWN++I     +   L+A++LF  + + G  P+  
Sbjct: 258 SAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKSENPLKALKLFVSMPEHGFSPNQG 317

Query: 237 TILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAI 296
           T +S L   S + +L  GR IH  ++K+  +   VLG +LI+ Y+KCG++E +   F  I
Sbjct: 318 TYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLGNALIDFYAKCGNLEDSRLCFDYI 377

Query: 297 ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
            +K +  W A++ G          L LF++M ++G +P   TF   L +C
Sbjct: 378 RDKNIVCWNALLSGYANKD-GPICLSLFLQMLQMGFRPTEYTFSTALKSC 426



 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 165/350 (47%), Gaps = 15/350 (4%)

Query: 77  FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR 136
           +V ++++++Y K GE+ LA KVFD+M +R+ VS+N++I GY++ G+V+ A  +F EM   
Sbjct: 50  YVCNNIISLYEKLGEVSLAGKVFDQMPERNKVSFNTIIKGYSKYGDVDKAWGVFSEMRYF 109

Query: 137 DAFTWTALLDGLAKCGK--VEAAREVFDQMPKKSSVSWNAMING-----YMKSGKINLAR 189
                 + + GL  C    V A  ++     K      +A +       Y +   + +A 
Sbjct: 110 GYLPNQSTVSGLLSCASLDVRAGTQLHGLSLKYGLFMADAFVGTCLLCLYGRLDLLEMAE 169

Query: 190 QLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLA 249
           Q+F  MP ++L +WN M+S     G   E M  F  L++ G   +  + L  L  VS + 
Sbjct: 170 QVFEDMPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLGVLKGVSCVK 229

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIV 309
            L   + +H    K   D +  +  SLI  Y KCG+   A  +F+   +  +  W AII 
Sbjct: 230 DLDISKQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIIC 289

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN---EY 366
                    +AL+LF+ M   G  P+  T++ VL   S   L+  G +   M+I    E 
Sbjct: 290 ATAKSENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCET 349

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRN 416
            IV        L+D   + G+L+ ++   + +  + N V W +LLS   N
Sbjct: 350 GIVLG----NALIDFYAKCGNLEDSRLCFDYIRDK-NIVCWNALLSGYAN 394



 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 103/458 (22%), Positives = 193/458 (42%), Gaps = 46/458 (10%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M   +L +WN ++S   H     + +  FR+++         +   V+KG S +  +   
Sbjct: 175 MPFKSLETWNHMMSLLGHRGFLKECMFFFRELVRMGASLTESSFLGVLKGVSCVKDLDIS 234

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           KQ+H    K G   +  V +SL++ Y K G   +A ++F      D+VSWN++I   A++
Sbjct: 235 KQLHCSATKKGLDCEISVVNSLISAYGKCGNTHMAERMFQDAGSWDIVSWNAIICATAKS 294

Query: 121 GNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----VSW 172
            N   A+KLF  MP    S +  T+ ++L   +    +   R++   + K       V  
Sbjct: 295 ENPLKALKLFVSMPEHGFSPNQGTYVSVLGVSSLVQLLSCGRQIHGMLIKNGCETGIVLG 354

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           NA+I+ Y K G +  +R  F  +  +N++ WN+++SGY  N      + LF  +L+ G  
Sbjct: 355 NALIDFYAKCGNLEDSRLCFDYIRDKNIVCWNALLSGYA-NKDGPICLSLFLQMLQMGFR 413

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF-DLDGVLG------------------ 273
           P+  T  +AL +      +   + +HS +V+  + D D VL                   
Sbjct: 414 PTEYTFSTALKS----CCVTELQQLHSVIVRMGYEDNDYVLSSLMRSYAKNQLMNDALLL 469

Query: 274 -------TSLIEM------YSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
                  TS++ +      YS+ G    ++ +   +       W   I         ++ 
Sbjct: 470 LDWASGPTSVVPLNIVAGIYSRRGQYHESVKLISTLEQPDTVSWNIAIAACSRSDYHEEV 529

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVD 380
           +ELF  M +  ++P   TF+ +L+ CS    +  G+    ++               L+D
Sbjct: 530 IELFKHMLQSNIRPDKYTFVSILSLCSKLCDLTLGSSIHGLITKTDFSCADTFVCNVLID 589

Query: 381 ILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHG 418
           +  + G ++    + E    + N + W +L+S    HG
Sbjct: 590 MYGKCGSIRSVMKVFEETREK-NLITWTALISCLGIHG 626



 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 106/220 (48%), Gaps = 12/220 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +P  VSWN+ I+    +    + + LF+ ML  ++ PD +T   ++  CS+L  +  G
Sbjct: 505 LEQPDTVSWNIAIAACSRSDYHEEVIELFKHMLQSNIRPDKYTFVSILSLCSKLCDLTLG 564

Query: 61  KQIHGYVLKIGFGF-DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
             IHG + K  F   D FV + L++MY K G +    KVF++  ++++++W +LI     
Sbjct: 565 SSIHGLITKTDFSCADTFVCNVLIDMYGKCGSIRSVMKVFEETREKNLITWTALISCLGI 624

Query: 120 NGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---- 171
           +G  + A++ F E  S     D  ++ ++L      G V+    +F +M K   V     
Sbjct: 625 HGYGQEALEKFKETLSLGFKPDRVSFISILTACRHGGMVKEGMGLFQKM-KDYGVEPEMD 683

Query: 172 -WNAMINGYMKSGKINLARQLFGQMP-GRNLISWNSMISG 209
            +   ++   ++G +  A  L  +MP   +   W + + G
Sbjct: 684 HYRCAVDLLARNGYLKEAEHLIREMPFPADAPVWRTFLDG 723


>AT1G10330.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:3388747-3390150 FORWARD
           LENGTH=467
          Length = 467

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 231/443 (52%), Gaps = 18/443 (4%)

Query: 54  LHAVQEGKQIHGYVLKIGFGF-----DKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDV- 107
           L++  + KQIH  +L            K V ++L+  Y   GE   +  +F  M+   V 
Sbjct: 24  LYSSNQIKQIHTVLLTSNALVASRWKTKCVYNTLIRSYLTTGEYKTSLALFTHMLASHVQ 83

Query: 108 ---VSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREV 160
              +++ SLI     + +V   + L  +   R    D F  T+ +    + G +E++R++
Sbjct: 84  PNNLTFPSLIKAACSSFSVSYGVALHGQALKRGFLWDPFVQTSFVRFYGEVGDLESSRKM 143

Query: 161 FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
           FD +     V+ N++++   ++G+++ A + F +MP  +++SW ++I+G+   G   +A+
Sbjct: 144 FDDILNPCVVACNSLLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKAL 203

Query: 221 ELFEVLLKEG---LMPSHVTILSALSAVSGLAVLGN--GRWIHSFMVKHCFDLDGVLGTS 275
            +F  +++     + P+  T +S LS+ +     G   G+ IH +++     L   LGT+
Sbjct: 204 MVFGEMIQNERAVITPNEATFVSVLSSCANFDQGGIRLGKQIHGYVMSKEIILTTTLGTA 263

Query: 276 LIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           L++MY K G +E AL +F  I +KK+  W AII  L  +G   QALE+F  M+   + P+
Sbjct: 264 LLDMYGKAGDLEMALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPN 323

Query: 336 AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII 395
            IT + +L AC+   LVD G + F  + +EYKI+PT EHYGC+VD++ RAG L  A N I
Sbjct: 324 GITLLAILTACARSKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFI 383

Query: 396 ESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWD 455
           +S+P  P+  +  +LL + + H N E+G      LI   P   G Y  LS   A    W 
Sbjct: 384 QSLPFEPDASVLGALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWS 443

Query: 456 KVSHVREMMKERGVLKDAGCSIV 478
           +   +R+ M E G+ K    S++
Sbjct: 444 EAEKMRKAMIEAGIRKIPAYSVL 466



 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 139/282 (49%), Gaps = 44/282 (15%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           +N +I  Y+       +L LF  ML   + P+  T P +IK      +V  G  +HG  L
Sbjct: 54  YNTLIRSYLTTGEYKTSLALFTHMLASHVQPNNLTFPSLIKAACSSFSVSYGVALHGQAL 113

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMK 128
           K GF +D FVQ+S V  Y + G++  +RK+FD +++  VV+ NSL+D   RNG ++ A +
Sbjct: 114 KRGFLWDPFVQTSFVRFYGEVGDLESSRKMFDDILNPCVVACNSLLDACGRNGEMDYAFE 173

Query: 129 LFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM---------PKKSS---------- 169
            F  MP  D  +WT +++G +K G    A  VF +M         P +++          
Sbjct: 174 YFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVITPNEATFVSVLSSCAN 233

Query: 170 -----VSWNAMINGYM--------------------KSGKINLARQLFGQMPGRNLISWN 204
                +     I+GY+                    K+G + +A  +F Q+  + + +WN
Sbjct: 234 FDQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEMALTIFDQIRDKKVCAWN 293

Query: 205 SMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
           ++IS    NGR  +A+E+FE++    + P+ +T+L+ L+A +
Sbjct: 294 AIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACA 335


>AT1G23450.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:8324698-8326697 FORWARD
           LENGTH=666
          Length = 666

 Score =  211 bits (536), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/496 (28%), Positives = 248/496 (50%), Gaps = 24/496 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    L   NL++ C+     S     ++ +M    +  +G T   +I+GCS    V EG
Sbjct: 173 MLDRNLAVCNLLLRCFCQTGESKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYEG 232

Query: 61  KQIHGYVLKIGFGFDK-FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           KQ+H  V+K G+     FV + LV+ Y+  G++  + + F+ + ++DV+SWNS++   A 
Sbjct: 233 KQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCAD 292

Query: 120 NGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPK-----KS 168
            G+V  ++ LF +M      PS   F   + L+  ++   +++ +++   + K      S
Sbjct: 293 YGSVLDSLDLFSKMQFWGKRPSIRPFM--SFLNFCSRNSDIQSGKQIHCYVLKMGFDVSS 350

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
               +A+I+ Y K   I  +  L+  +P  NL   NS+++     G   + +E+F +++ 
Sbjct: 351 LHVQSALIDMYGKCNGIENSALLYQSLPCLNLECCNSLMTSLMHCGITKDIIEMFGLMID 410

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC------FDLDGVLGTSLIEMYSK 282
           EG     VT+ + L A+S    L     +HS  + HC      +  D  +  SLI+ Y+K
Sbjct: 411 EGTGIDEVTLSTVLKALS----LSLPESLHSCTLVHCCAIKSGYAADVAVSCSLIDAYTK 466

Query: 283 CGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGV 342
            G  E +  VF  +    +   T+II G   +G+    +++  EM R+ + P  +T + V
Sbjct: 467 SGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIPDEVTILSV 526

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRP 402
           L+ CSH GLV+EG   FD + ++Y I P  + Y C+VD+L RAG +++A+ ++       
Sbjct: 527 LSGCSHSGLVEEGELIFDSLESKYGISPGRKLYACMVDLLGRAGLVEKAERLLLQARGDA 586

Query: 403 NKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVRE 462
           + V W SLL S R H N  IG  AA  L+  +P+    Y  +S  Y   G ++    +RE
Sbjct: 587 DCVAWSSLLQSCRIHRNETIGRRAAEVLMNLEPENFAVYIQVSKFYFEIGDFEISRQIRE 646

Query: 463 MMKERGVLKDAGCSIV 478
           +   R ++++ G S V
Sbjct: 647 IAASRELMREIGYSSV 662



 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 184/360 (51%), Gaps = 16/360 (4%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +V++NL+IS       S  A+ L+ +M+   L     T P V+  CS     +EG
Sbjct: 72  MSVRDVVTYNLLISGNSRYGCSLRAIELYAEMVSCGLRESASTFPSVLSVCSDELFCREG 131

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
            Q+H  V+ +GFG + FV+S+LV +YA    + +A K+FD+M+DR++   N L+  + + 
Sbjct: 132 IQVHCRVISLGFGCNMFVRSALVGLYACLRLVDVALKLFDEMLDRNLAVCNLLLRCFCQT 191

Query: 121 GN----VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSW---- 172
           G      EV +++  E  +++  T+  ++ G +    V   +++   + K     W    
Sbjct: 192 GESKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYEGKQLHSLVVKS---GWNISN 248

Query: 173 ----NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
               N +++ Y   G ++ + + F  +P +++ISWNS++S     G  L++++LF  +  
Sbjct: 249 IFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCADYGSVLDSLDLFSKMQF 308

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIE 287
            G  PS    +S L+  S  + + +G+ IH +++K  FD+  + + ++LI+MY KC  IE
Sbjct: 309 WGKRPSIRPFMSFLNFCSRNSDIQSGKQIHCYVLKMGFDVSSLHVQSALIDMYGKCNGIE 368

Query: 288 SALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           ++  +++++    L    +++  L   G+    +E+F  M   G     +T   VL A S
Sbjct: 369 NSALLYQSLPCLNLECCNSLMTSLMHCGITKDIIEMFGLMIDEGTGIDEVTLSTVLKALS 428



 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 156/327 (47%), Gaps = 21/327 (6%)

Query: 88  KWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS----RDAFTWTA 143
           K G +  A + FD+M  RDVV++N LI G +R G    A++L+ EM S      A T+ +
Sbjct: 58  KSGNLLSAHEAFDEMSVRDVVTYNLLISGNSRYGCSLRAIELYAEMVSCGLRESASTFPS 117

Query: 144 LLDGLAKCGKVEAAREVFDQMPKKSSVSW-------NAMINGYMKSGKINLARQLFGQMP 196
           +   L+ C      RE      +  S+ +       +A++  Y     +++A +LF +M 
Sbjct: 118 V---LSVCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLYACLRLVDVALKLFDEML 174

Query: 197 GRNLISWNSMISGYQLNGRFLEAMELFEVLLK---EGLMPSHVTILSALSAVSGLAVLGN 253
            RNL   N ++  +   G   E+  LFEV L+   EG+  + +T    +   S   ++  
Sbjct: 175 DRNLAVCNLLLRCFCQTG---ESKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYE 231

Query: 254 GRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLG 312
           G+ +HS +VK  +++  + +   L++ YS CG +  ++  F A+  K +  W +I+    
Sbjct: 232 GKQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCA 291

Query: 313 MHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTV 372
            +G    +L+LF +M+  G +P    F+  LN CS    +  G +    ++     V ++
Sbjct: 292 DYGSVLDSLDLFSKMQFWGKRPSIRPFMSFLNFCSRNSDIQSGKQIHCYVLKMGFDVSSL 351

Query: 373 EHYGCLVDILCRAGHLQQAKNIIESMP 399
                L+D+  +   ++ +  + +S+P
Sbjct: 352 HVQSALIDMYGKCNGIENSALLYQSLP 378



 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 123/260 (47%), Gaps = 1/260 (0%)

Query: 161 FDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAM 220
            ++ P     + N  I+  +KSG +  A + F +M  R+++++N +ISG    G  L A+
Sbjct: 38  LEENPSDLVYTHNRRIDELIKSGNLLSAHEAFDEMSVRDVVTYNLLISGNSRYGCSLRAI 97

Query: 221 ELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMY 280
           EL+  ++  GL  S  T  S LS  S       G  +H  ++   F  +  + ++L+ +Y
Sbjct: 98  ELYAEMVSCGLRESASTFPSVLSVCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLY 157

Query: 281 SKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
           +    ++ AL +F  + ++ L     ++      G + +  E+++ M   G+  + +T+ 
Sbjct: 158 ACLRLVDVALKLFDEMLDRNLAVCNLLLRCFCQTGESKRLFEVYLRMELEGVAKNGLTYC 217

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM 400
            ++  CSH  LV EG +   +++     +  +     LVD     G L  +     ++P 
Sbjct: 218 YMIRGCSHDRLVYEGKQLHSLVVKSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPE 277

Query: 401 RPNKVIWMSLLSSSRNHGNL 420
           + + + W S++S   ++G++
Sbjct: 278 K-DVISWNSIVSVCADYGSV 296


>AT4G19220.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10505266-10508121 REVERSE
           LENGTH=932
          Length = 932

 Score =  209 bits (531), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 236/490 (48%), Gaps = 37/490 (7%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVI---KGCSRLHAVQEGKQ 62
           LVSWN +IS +  N  ++ A  LF++++  +     F+L  V+     C    ++  GK 
Sbjct: 460 LVSWNSMISAFSQNGFTHKAKNLFKEVVS-EYSCSKFSLSTVLAILTSCDSSDSLIFGKS 518

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN 122
           +H ++ K+G          L + + +   M   R         D+ SWNS+I G A +G+
Sbjct: 519 VHCWLQKLG---------DLTSAFLRLETMSETR---------DLTSWNSVISGCASSGH 560

Query: 123 VEVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS-----SVSW 172
              +++ F  M        D  T    +      G V   R  F  +  KS     +   
Sbjct: 561 HLESLRAFQAMSREGKIRHDLITLLGTISASGNLGLVLQGR-CFHGLAIKSLRELDTQLQ 619

Query: 173 NAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           N +I  Y +   I  A ++FG +   NL SWN +IS    N    E  +LF  L    L 
Sbjct: 620 NTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVISALSQNKAGREVFQLFRNL---KLE 676

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P+ +T +  LSA + L     G   H  +++  F  +  +  +L++MYS CG +E+ + V
Sbjct: 677 PNEITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMKV 736

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSHKGL 351
           F+      +  W ++I   G HG+ ++A+ELF E+     M+P+  +FI +L+ACSH G 
Sbjct: 737 FRNSGVNSISAWNSVISAHGFHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACSHSGF 796

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           +DEG   +  M  ++ + P  EH   +VD+L RAG L++A   I  +       +W +LL
Sbjct: 797 IDEGLSYYKQMEEKFGVKPVTEHRVWIVDMLGRAGKLREAYEFITGIGEPQKAGVWGALL 856

Query: 412 SSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
           S+   HG+ ++G+  A  L E +PD    Y  L+N Y   G W++   +R+M+++  + K
Sbjct: 857 SACNYHGDTKLGKEVAEVLFEMEPDNASYYISLANTYVGLGGWEEAVRLRKMVEDNALKK 916

Query: 472 DAGCSIVEHR 481
             G S+++ R
Sbjct: 917 LPGYSVIDVR 926



 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 144/524 (27%), Positives = 242/524 (46%), Gaps = 50/524 (9%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHD-LLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           ++S N I++ +  N    +A  +  QM   D + PD  T+  +   C  L   +EG+ +H
Sbjct: 357 VISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVH 416

Query: 65  GYVLKIGFGFDKF-VQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
           GY +++        V +S+++MY K G    A  +F     RD+VSWNS+I  +++NG  
Sbjct: 417 GYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMISAFSQNGFT 476

Query: 124 EVAMKLFDEMPSR---DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMINGYM 180
             A  LF E+ S      F+ + +L  L  C   ++   +F     KS   W        
Sbjct: 477 HKAKNLFKEVVSEYSCSKFSLSTVLAILTSCDSSDSL--IFG----KSVHCW------LQ 524

Query: 181 KSGKINLARQLFGQMP-GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEG-LMPSHVTI 238
           K G +  A      M   R+L SWNS+ISG   +G  LE++  F+ + +EG +    +T+
Sbjct: 525 KLGDLTSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGKIRHDLITL 584

Query: 239 LSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIAN 298
           L  +SA   L ++  GR  H   +K   +LD  L  +LI MY +C  IESA+ VF  I++
Sbjct: 585 LGTISASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLISD 644

Query: 299 KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKC 358
             L  W  +I  L  +    +  +LF   R + ++P+ ITF+G+L+A +  G    G + 
Sbjct: 645 PNLCSWNCVISALSQNKAGREVFQLF---RNLKLEPNEITFVGLLSASTQLGSTSYGMQA 701

Query: 359 FDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNH 417
              +I   ++  P V     LVD+    G L+    +  +  +      W S++S+   H
Sbjct: 702 HCHLIRRGFQANPFVS--AALVDMYSSCGMLETGMKVFRNSGVNSISA-WNSVISAHGFH 758

Query: 418 G----NLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
           G     +E+ +  + N  E +P+ +   +LLS    +    + +S+ ++M ++ GV    
Sbjct: 759 GMGEKAMELFKELSSN-SEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKP-- 815

Query: 474 GCSIVEHR----------GKLN---RFIVGDKSHPQTKAIYAKL 504
              + EHR          GKL     FI G    PQ   ++  L
Sbjct: 816 ---VTEHRVWIVDMLGRAGKLREAYEFITG-IGEPQKAGVWGAL 855



 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 230/503 (45%), Gaps = 74/503 (14%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M    +VSWN I++  + N     +L  F+ M       D  T  CVI  CS +  +  G
Sbjct: 249 MEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELTLG 308

Query: 61  KQIHGYVLKIGFGFDKFVQ--SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           + +HG V+K G+  +  V   +S+++MY+K G+   A  VF+++V RDV+S N++++G+A
Sbjct: 309 ESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFA 368

Query: 119 RNGNVEVAMKLFDEMPSRDAFT--WTALLDGLAKCGKVEAARE--------VFDQMPKKS 168
            NG  E A  + ++M S D        ++   + CG +  +RE        V  +M  ++
Sbjct: 369 ANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRA 428

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
               N++I+ Y K G    A  LF     R+L+SWNSMIS +  NG   +A  LF+ ++ 
Sbjct: 429 LEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEVVS 488

Query: 229 EGLMP--SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
           E      S  T+L+ L++      L  G+ +H ++                    K G +
Sbjct: 489 EYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWL-------------------QKLGDL 529

Query: 287 ESALAVFKAIA-NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPH-AITFIGVLN 344
            SA    + ++  + L  W ++I G    G   ++L  F  M R G   H  IT +G ++
Sbjct: 530 TSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGKIRHDLITLLGTIS 589

Query: 345 ACSHKGLVDEGNKCF----------------DMMINEY----------KIV-----PTVE 373
           A  + GLV +G +CF                + +I  Y          K+      P + 
Sbjct: 590 ASGNLGLVLQG-RCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLISDPNLC 648

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLI-- 431
            + C++  L +    ++   +  ++ + PN++ ++ LLS+S   G+   G  A  +LI  
Sbjct: 649 SWNCVISALSQNKAGREVFQLFRNLKLEPNEITFVGLLSASTQLGSTSYGMQAHCHLIRR 708

Query: 432 --EADPDATGCYTLLSNIYAAAG 452
             +A+P  +     L ++Y++ G
Sbjct: 709 GFQANPFVSAA---LVDMYSSCG 728



 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 178/370 (48%), Gaps = 14/370 (3%)

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           + +H + LK G   D    S L+  Y + GE+  +  +FD++ ++DV+ WNS+I    +N
Sbjct: 107 RSVHCFALKCGLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQN 166

Query: 121 GNVEVAMKLFDEMPSR-DAFTWTALLDGLAKCGKVEAARE--------VFDQMPKKSSVS 171
           G    A+ LF EM  + + F  T LL   +    +  +R+        +   +   SS+ 
Sbjct: 167 GRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLC 226

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
            NA++N Y K   ++ A  +F  M  R+++SWN++++    NG   ++++ F+ +   G 
Sbjct: 227 -NALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQ 285

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG--VLGTSLIEMYSKCGSIESA 289
               VT    +SA S +  L  G  +H  ++K  +  +    +G S+I MYSKCG  E+A
Sbjct: 286 EADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAA 345

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG-MKPHAITFIGVLNACSH 348
             VF+ +  + +    AI+ G   +G+ ++A  +  +M+ +  ++P   T + + + C  
Sbjct: 346 ETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGD 405

Query: 349 KGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWM 408
                EG       +        +E    ++D+  + G   QA+ + ++   R + V W 
Sbjct: 406 LSFSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHR-DLVSWN 464

Query: 409 SLLSSSRNHG 418
           S++S+   +G
Sbjct: 465 SMISAFSQNG 474



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 18/342 (5%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           + +  ++ WN +I+    N R   A+ LF +M+H     D  TL       S LH  ++ 
Sbjct: 148 LKEKDVIVWNSMITALNQNGRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSLHLSRKC 207

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
             +H   ++ G   D  + ++L+N+YAK   +  A  VF  M  RD+VSWN+++     N
Sbjct: 208 SMLHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLAN 267

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAR--EVFDQMPKKSSVS--- 171
           G+   +++ F  M       D  T++ +   ++ C  +E     E    +  KS  S   
Sbjct: 268 GHPRKSLQYFKSMTGSGQEADTVTFSCV---ISACSSIEELTLGESLHGLVIKSGYSPEA 324

Query: 172 ----WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
                N++I+ Y K G    A  +F ++  R++IS N++++G+  NG F EA  +   + 
Sbjct: 325 HVSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQ 384

Query: 228 K-EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV-LGTSLIEMYSKCGS 285
             + + P   T++S  S    L+    GR +H + V+       + +  S+I+MY KCG 
Sbjct: 385 SVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGL 444

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM 327
              A  +FK   ++ L  W ++I     +G   +A  LF E+
Sbjct: 445 TTQAELLFKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEV 486



 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 131/289 (45%), Gaps = 12/289 (4%)

Query: 125 VAMKLFDEMPSRDAFTWTA-------LLDGLAKCGKVEAAREVFDQMPK----KSSVSWN 173
           +   LFDE+P R+  T  +       +L       + E  R V     K    +   + +
Sbjct: 67  IVHNLFDELPERENRTMESSFMFLRDVLRSFMMRTETETPRSVHCFALKCGLLQDLATSS 126

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
            ++  Y ++G++  +  LF ++  +++I WNSMI+    NGR++ A+ LF  ++ +G   
Sbjct: 127 KLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLFIEMIHKGNEF 186

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
              T+L A SA+S L +      +H   ++     D  L  +L+ +Y+K  ++ SA  VF
Sbjct: 187 DSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVF 246

Query: 294 KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
             + ++ +  W  I+     +G   ++L+ F  M   G +   +TF  V++ACS    + 
Sbjct: 247 THMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELT 306

Query: 354 EGNKCFDMMINE-YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
            G     ++I   Y     V     ++ +  + G  + A+ + E +  R
Sbjct: 307 LGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCR 355


>AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor  20 |
           chr3:6543699-6545117 REVERSE LENGTH=472
          Length = 472

 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/328 (34%), Positives = 187/328 (57%), Gaps = 16/328 (4%)

Query: 167 KSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGY-----QLNGRFLEAME 221
           +S +    +++ Y K+G +  AR++F +MP R  ++WN+MI GY     + N    +AM 
Sbjct: 145 ESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMV 204

Query: 222 LFEVL--LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCF--DLDGVLGTSLI 277
           LF        G+ P+  T++  LSA+S   +L  G  +H ++ K  F  ++D  +GT+L+
Sbjct: 205 LFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALV 264

Query: 278 EMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAI 337
           +MYSKCG + +A +VF+ +  K +  WT++  GL ++G  ++   L   M   G+KP+ I
Sbjct: 265 DMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEI 324

Query: 338 TFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
           TF  +L+A  H GLV+EG + F  M   + + P +EHYGC+VD+L +AG +Q+A   I +
Sbjct: 325 TFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILA 384

Query: 398 MPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPD-----ATGC--YTLLSNIYAA 450
           MP++P+ ++  SL ++   +G   +GE     L+E + +      + C  Y  LSN+ A 
Sbjct: 385 MPIKPDAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAH 444

Query: 451 AGKWDKVSHVREMMKERGVLKDAGCSIV 478
            GKW +V  +R+ MKER +    G S V
Sbjct: 445 KGKWVEVEKLRKEMKERRIKTRPGYSFV 472



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 158/372 (42%), Gaps = 70/372 (18%)

Query: 60  GKQIHGYVLKIGFGFD-KFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYA 118
           G+ +HG V K+GF ++ + + ++L++ YAK G++  ARKVFD+M +R  V+WN++I GY 
Sbjct: 130 GRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGGYC 189

Query: 119 R-----NGNVEVAMKLFDEM--------PSRDAFTWTALLDGLAKCGKVEAAR------E 159
                 N N   AM LF           P+    T   +L  +++ G +E         E
Sbjct: 190 SHKDKGNHNARKAMVLFRRFSCCGSGVRPTDT--TMVCVLSAISQTGLLEIGSLVHGYIE 247

Query: 160 VFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEA 219
                P+       A+++ Y K G +N A  +F  M  +N+ +W SM +G  LNGR  E 
Sbjct: 248 KLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWTSMATGLALNGRGNET 307

Query: 220 MELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEM 279
             L   + + G+ P+ +T  S LSA                                   
Sbjct: 308 PNLLNRMAESGIKPNEITFTSLLSA----------------------------------- 332

Query: 280 YSKCGSIESALAVFKAIANK-----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           Y   G +E  + +FK++  +      + H+  I+  LG  G   +A +  + M    +KP
Sbjct: 333 YRHIGLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMP---IKP 389

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMI-----NEYKIVPTVEHYGCLVDILCRAGHLQ 389
            AI    + NACS  G    G +    ++     +E       E Y  L ++L   G   
Sbjct: 390 DAILLRSLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWV 449

Query: 390 QAKNIIESMPMR 401
           + + + + M  R
Sbjct: 450 EVEKLRKEMKER 461



 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 28/282 (9%)

Query: 1   MHKPTLVSWNLIISCYVH-----NHRSNDALLLFRQM--LHHDLLPDGFTLPCVIKGCSR 53
           M + T V+WN +I  Y       NH +  A++LFR+       + P   T+ CV+   S+
Sbjct: 173 MPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQ 232

Query: 54  LHAVQEGKQIHGYVLKIGFG--FDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWN 111
              ++ G  +HGY+ K+GF    D F+ ++LV+MY+K G +  A  VF+ M  ++V +W 
Sbjct: 233 TGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKVKNVFTWT 292

Query: 112 SLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK 167
           S+  G A NG       L + M       +  T+T+LL      G VE   E+F  M  +
Sbjct: 293 SMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTR 352

Query: 168 SSVS-----WNAMINGYMKSGKINLARQLFGQMPGR-NLISWNSMISGYQLNGRFLEAME 221
             V+     +  +++   K+G+I  A Q    MP + + I   S+ +   + G  +   E
Sbjct: 353 FGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIKPDAILLRSLCNACSIYGETVMGEE 412

Query: 222 LFEVLLK-----EGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           + + LL+     E L  S      ALS V    +   G+W+ 
Sbjct: 413 IGKALLEIEREDEKLSGSECEDYVALSNV----LAHKGKWVE 450


>AT2G25580.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:10888102-10889949 FORWARD
           LENGTH=615
          Length = 615

 Score =  203 bits (516), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 146/514 (28%), Positives = 227/514 (44%), Gaps = 33/514 (6%)

Query: 101 KMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRD-AFTWTALLDGLAKCGKVEAARE 159
           K +DR+V       D Y    NV VA+   +++  +     +  LL              
Sbjct: 129 KTIDREVYDMIMEFDEYCIQENVRVALTTMEKLEKKGYVMDFVRLLK------------- 175

Query: 160 VFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNS-MISGYQL---NGR 215
              Q+ ++ +V +   +    K   +   R L   +    L  +   MI  Y     +G+
Sbjct: 176 -LTQLCREGNVYYEVSVLEEAKVSVLAKIRALVNNLEANYLKYYTDIMIEEYDAFCKHGK 234

Query: 216 FLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV-LGNGRWIHSFMVKHCFDLDGVLGT 274
             +A+   ++L     +   ++ L  L+ + G A  L   + +H  +      LD     
Sbjct: 235 VKKALYTIDILASMNYVVD-LSRLLRLAKICGEAEGLQEAKTVHGKISASVSHLDLSSNH 293

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
            L+EMYS CG    A +VF+ ++ K L  W  II     +G  + A+++F   +  G  P
Sbjct: 294 VLLEMYSNCGLANEAASVFEKMSEKNLETWCIIIRCFAKNGFGEDAIDMFSRFKEEGNIP 353

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
               F G+  AC   G VDEG   F+ M  +Y I P++E Y  LV++    G L +A   
Sbjct: 354 DGQLFRGIFYACGMLGDVDEGLLHFESMSRDYGIAPSIEDYVSLVEMYALPGFLDEALEF 413

Query: 395 IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKW 454
           +E MPM PN  +W +L++ SR HGNLE+G+Y A  +   DP      +    I   A   
Sbjct: 414 VERMPMEPNVDVWETLMNLSRVHGNLELGDYCAEVVEFLDPTRLNKQSREGFIPVKASDV 473

Query: 455 DKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLA 514
           +K S    + K  G+L     S+ E R        GD + P+   ++  LR +   +   
Sbjct: 474 EKES----LKKRSGILHGVKSSMQEFRA-------GDTNLPENDELFQLLRNLKMHMVEV 522

Query: 515 GHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAV 574
           G+V +T   L                  R+A +  +LN   R P  ++KNLRVC DCH  
Sbjct: 523 GYVAETRMAL-HDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNA 581

Query: 575 TKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
            K++S I GRE+I RD  RFH  KNG C+C D+W
Sbjct: 582 LKIMSDIVGREVITRDIKRFHQMKNGACTCKDYW 615


>AT1G71460.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:26928247-26930316 REVERSE
           LENGTH=689
          Length = 689

 Score =  199 bits (506), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 205/401 (51%), Gaps = 14/401 (3%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHD-LLPDGFTLPCVIKGCSRLHAVQEGKQIH 64
           +V W  +I+   HN R  +AL LFR M+  + + P+   L  ++     + A++ GK++H
Sbjct: 280 IVVWGAMIAGLAHNKRQWEALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGKEVH 339

Query: 65  GYVLKI-GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
            +VLK   +    FV S L+++Y K G+M   R+VF     R+ +SW +L+ GYA NG  
Sbjct: 340 AHVLKSKNYVEQPFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRF 399

Query: 124 EVAMK----LFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQ------MPKKSSVSWN 173
           + A++    +  E    D  T   +L   A+   ++  +E+         +P  S V+  
Sbjct: 400 DQALRSIVWMQQEGFRPDVVTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVT-- 457

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
           +++  Y K G      +LF ++  RN+ +W +MI  Y  N      +E+F ++L     P
Sbjct: 458 SLMVMYSKCGVPEYPIRLFDRLEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKHRP 517

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
             VT+   L+  S L  L  G+ +H  ++K  F+    +   +I+MY KCG + SA   F
Sbjct: 518 DSVTMGRVLTVCSDLKALKLGKELHGHILKKEFESIPFVSARIIKMYGKCGDLRSANFSF 577

Query: 294 KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
            A+A K    WTAII   G + L   A+  F +M   G  P+  TF  VL+ CS  G VD
Sbjct: 578 DAVAVKGSLTWTAIIEAYGCNELFRDAINCFEQMVSRGFTPNTFTFTAVLSICSQAGFVD 637

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
           E  + F++M+  Y + P+ EHY  ++++L R G +++A+ +
Sbjct: 638 EAYRFFNLMLRMYNLQPSEEHYSLVIELLNRCGRVEEAQRL 678



 Score =  164 bits (416), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/419 (27%), Positives = 208/419 (49%), Gaps = 16/419 (3%)

Query: 8   SWNLIISCYV--HNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           SWN ++   V     R  D L  F +M    +  + ++L  V K  +   A+++G + H 
Sbjct: 179 SWNALLRGTVISGKKRYQDVLSTFTEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHA 238

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEV 125
             +K G     F+++SLV+MY K G++GLAR+VFD++V+RD+V W ++I G A N     
Sbjct: 239 LAIKNGLFNSVFLKTSLVDMYFKCGKVGLARRVFDEIVERDIVVWGAMIAGLAHNKRQWE 298

Query: 126 AMKLFDEMPSRD-----AFTWTALLDGLAKCGKVEAAREVFDQMPK-----KSSVSWNAM 175
           A+ LF  M S +     +   T +L  L     ++  +EV   + K     +     + +
Sbjct: 299 ALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQPFVHSGL 358

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
           I+ Y K G +   R++F     RN ISW +++SGY  NGRF +A+     + +EG  P  
Sbjct: 359 IDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQEGFRPDV 418

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
           VTI + L   + L  +  G+ IH + +K+ F  +  L TSL+ MYSKCG  E  + +F  
Sbjct: 419 VTIATVLPVCAELRAIKQGKEIHCYALKNLFLPNVSLVTSLMVMYSKCGVPEYPIRLFDR 478

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           +  + +  WTA+I     +      +E+F  M     +P ++T   VL  CS    +  G
Sbjct: 479 LEQRNVKAWTAMIDCYVENCDLRAGIEVFRLMLLSKHRPDSVTMGRVLTVCSDLKALKLG 538

Query: 356 NKCFDMMI-NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSS 413
            +    ++  E++ +P V     ++ +  + G L+ A    +++ ++   + W +++ +
Sbjct: 539 KELHGHILKKEFESIPFVS--ARIIKMYGKCGDLRSANFSFDAVAVK-GSLTWTAIIEA 594



 Score =  120 bits (302), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 188/456 (41%), Gaps = 80/456 (17%)

Query: 13  ISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGF 72
           I  +   +    AL +   +    +  +  T   +++ C R  ++  GKQ+H ++   G 
Sbjct: 83  IQIFARQNNLEVALTILDYLEQRGIPVNATTFSALLEACVRRKSLLHGKQVHVHIRINGL 142

Query: 73  GFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGN--VEVAMKLF 130
             ++F+++ LV+MY   G +  A+KVFD+    +V SWN+L+ G   +G    +  +  F
Sbjct: 143 ESNEFLRTKLVHMYTACGSVKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDVLSTF 202

Query: 131 DEMPS---------------------------------------RDAFTWTALLDGLAKC 151
            EM                                            F  T+L+D   KC
Sbjct: 203 TEMRELGVDLNVYSLSNVFKSFAGASALRQGLKTHALAIKNGLFNSVFLKTSLVDMYFKC 262

Query: 152 GKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQ 211
           GKV  AR VFD++ ++  V W A                               MI+G  
Sbjct: 263 GKVGLARRVFDEIVERDIVVWGA-------------------------------MIAGLA 291

Query: 212 LNGRFLEAMELFEVLL-KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK-HCFDLD 269
            N R  EA+ LF  ++ +E + P+ V + + L  +  +  L  G+ +H+ ++K   +   
Sbjct: 292 HNKRQWEALGLFRTMISEEKIYPNSVILTTILPVLGDVKALKLGKEVHAHVLKSKNYVEQ 351

Query: 270 GVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRR 329
             + + LI++Y KCG + S   VF     +    WTA++ G   +G  DQAL   + M++
Sbjct: 352 PFVHSGLIDLYCKCGDMASGRRVFYGSKQRNAISWTALMSGYAANGRFDQALRSIVWMQQ 411

Query: 330 IGMKPHAITFIGVLNACSHKGLVDEGNK--CFDMMINEYKIVPTVEHYGCLVDILCRAGH 387
            G +P  +T   VL  C+    + +G +  C+ +   +   +P V     L+ +  + G 
Sbjct: 412 EGFRPDVVTIATVLPVCAELRAIKQGKEIHCYAL---KNLFLPNVSLVTSLMVMYSKCGV 468

Query: 388 LQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
            +    + + +  R N   W +++     + +L  G
Sbjct: 469 PEYPIRLFDRLEQR-NVKAWTAMIDCYVENCDLRAG 503


>AT2G15690.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:6831855-6833594 REVERSE
           LENGTH=579
          Length = 579

 Score =  199 bits (505), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 121/383 (31%), Positives = 190/383 (49%), Gaps = 30/383 (7%)

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           LL +G MP     +    + + L  L + + +H   ++  F  D  L   +I M+ +C S
Sbjct: 227 LLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECSS 286

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           I  A  VF  + +K +  W  ++     +G+ D AL LF EM + G+KP+  TF+ V  A
Sbjct: 287 ITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFLA 346

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV 405
           C+  G ++E    FD M NE+ I P  EHY  ++ +L + GHL +A+  I  +P  P   
Sbjct: 347 CATVGGIEEAFLHFDSMKNEHGISPKTEHYLGVLGVLGKCGHLVEAEQYIRDLPFEPTAD 406

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
            W ++ + +R HG++++ +Y    +++ DP       +++ I     K           K
Sbjct: 407 FWEAMRNYARLHGDIDLEDYMEELMVDVDPSK----AVINKIPTPPPK---------SFK 453

Query: 466 ERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVPDTSQVLX 525
           E  ++  +   I+E R   N     D++           +EM+ K K   +VPDT  VL 
Sbjct: 454 ETNMVT-SKSRILEFR---NLTFYKDEA-----------KEMAAK-KGVVYVPDTRFVL- 496

Query: 526 XXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKLLSAIYGRE 585
                            RLAI++G++    R  + I+KNLRVC DCH   K++S I GR 
Sbjct: 497 HDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRV 556

Query: 586 IIVRDNSRFHHFKNGTCSCNDFW 608
           +IVRDN RFHHFK+G CSC D+W
Sbjct: 557 LIVRDNKRFHHFKDGKCSCGDYW 579



 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 31  QMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWG 90
           ++L    +PD      + + C+ L +++  K++H + L+  F  D  + + +++M+ +  
Sbjct: 226 ELLDKGAMPDRECFVLLFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMFGECS 285

Query: 91  EMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEM------PSRDAFTWTAL 144
            +  A++VFD MVD+D+ SW+ ++  Y+ NG  + A+ LF+EM      P+ + F    L
Sbjct: 286 SITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFLTVFL 345

Query: 145 LDGLAKCGKVEAAREVFDQMPKKSSVS 171
               A  G +E A   FD M  +  +S
Sbjct: 346 --ACATVGGIEEAFLHFDSMKNEHGIS 370



 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/226 (26%), Positives = 101/226 (44%), Gaps = 30/226 (13%)

Query: 126 AMKLFDE--MPSRDAFTWTALLDGLAKCGKVEAAREVFD---QMPKKSSVSWNAM-INGY 179
           A++L D+  MP R+ F    L +  A    +E +++V D   Q   +     N M I+ +
Sbjct: 224 AIELLDKGAMPDRECFVL--LFESCANLKSLEHSKKVHDHFLQSKFRGDPKLNNMVISMF 281

Query: 180 MKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTIL 239
            +   I  A+++F  M  +++ SW+ M+  Y  NG   +A+ LFE + K GL P+  T L
Sbjct: 282 GECSSITDAKRVFDHMVDKDMDSWHLMMCAYSDNGMGDDALHLFEEMTKHGLKPNEETFL 341

Query: 240 S---ALSAVSGLA-------VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           +   A + V G+         + N   I S   +H   + GVLG        KCG +  A
Sbjct: 342 TVFLACATVGGIEEAFLHFDSMKNEHGI-SPKTEHYLGVLGVLG--------KCGHLVEA 392

Query: 290 LAVFKAIANKKLGH-WTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
               + +  +     W A+     +HG  D  LE +ME   + + P
Sbjct: 393 EQYIRDLPFEPTADFWEAMRNYARLHGDID--LEDYMEELMVDVDP 436


>AT1G14470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4954080-4955702 FORWARD
           LENGTH=540
          Length = 540

 Score =  198 bits (504), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 137/478 (28%), Positives = 217/478 (45%), Gaps = 113/478 (23%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +   N +   +     +ND L L+ Q     ++PD F+ P VIK   R      G   
Sbjct: 69  PNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRF-----GILF 123

Query: 64  HGYVLKIGFG-------------------------FDKFVQSS------LVNMYAKWG-- 90
              V K+GF                          FD+  Q        +++ Y KWG  
Sbjct: 124 QALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNK 183

Query: 91  -----------------------------EMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
                                        ++  ARK FD+M ++ VVSWN+++ GYA+NG
Sbjct: 184 EEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNG 243

Query: 122 NVEVAMKLFDEM------------------------PSR---------------DAFTWT 142
             E A++LF++M                        PS                + F  T
Sbjct: 244 FTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCFVKT 303

Query: 143 ALLDGLAKCGKVEAAREVFDQM-PKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI 201
           ALLD  AKC  +++AR +F+++  +++ V+WNAMI+GY + G ++ ARQLF  MP RN++
Sbjct: 304 ALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKRNVV 363

Query: 202 SWNSMISGYQLNGRFLEAMELFEVLLKEG-LMPSHVTILSALSAVSGLAVLGNGRWIHSF 260
           SWNS+I+GY  NG+   A+E FE ++  G   P  VT++S LSA   +A L  G  I  +
Sbjct: 364 SWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCIVDY 423

Query: 261 MVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQA 320
           + K+   L+     SLI MY++ G++  A  VF  +  + +  +  +      +G   + 
Sbjct: 424 IRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDGVET 483

Query: 321 LELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCL 378
           L L  +M+  G++P  +T+  VL AC+  GL+ EG + F  + N     P  +HY C+
Sbjct: 484 LNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSIRN-----PLADHYACM 536



 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 149/298 (50%), Gaps = 41/298 (13%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M + ++VSWN ++S Y  N  + DAL LF  ML   + P+  T   VI  CS        
Sbjct: 224 MPEKSVVSWNAMLSGYAQNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLT 283

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDRDVVSWNSLIDGYAR 119
           + +   + +     + FV+++L++M+AK  ++  AR++F+++   R++V+WN++I GY R
Sbjct: 284 RSLVKLIDEKRVRLNCFVKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTR 343

Query: 120 NGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQM-------P------- 165
            G++  A +LFD MP R+  +W +L+ G A  G+   A E F+ M       P       
Sbjct: 344 IGDMSSARQLFDTMPKRNVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMIS 403

Query: 166 ---------------------KKSSVSWN-----AMINGYMKSGKINLARQLFGQMPGRN 199
                                +K+ +  N     ++I  Y + G +  A+++F +M  R+
Sbjct: 404 VLSACGHMADLELGDCIVDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERD 463

Query: 200 LISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWI 257
           ++S+N++ + +  NG  +E + L   +  EG+ P  VT  S L+A +   +L  G+ I
Sbjct: 464 VVSYNTLFTAFAANGDGVETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRI 521



 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 151/349 (43%), Gaps = 57/349 (16%)

Query: 95  ARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDE------MPSRDAFTWTALLDGL 148
            R +FD +   +V   NS+   +++       ++L+++      MP  DAF++  ++   
Sbjct: 59  TRLIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMP--DAFSFPVVIKSA 116

Query: 149 AKCGKV-EAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMI 207
            + G + +A  E       K     N +++ Y+K   +  AR++F Q+  R    WN MI
Sbjct: 117 GRFGILFQALVEKLGFF--KDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMI 174

Query: 208 SGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD 267
           SGY   G   EA +LF+      +MP +                                
Sbjct: 175 SGYWKWGNKEEACKLFD------MMPEN-------------------------------- 196

Query: 268 LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM 327
            D V  T +I  ++K   +E+A   F  +  K +  W A++ G   +G  + AL LF +M
Sbjct: 197 -DVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYAQNGFTEDALRLFNDM 255

Query: 328 RRIGMKPHAITFIGVLNACSHKGLVDEG-NKCFDMMINEYKIVPTVEHYGCLVDILCRAG 386
            R+G++P+  T++ V++ACS +   D    +    +I+E ++         L+D+  +  
Sbjct: 256 LRLGVRPNETTWVIVISACSFRA--DPSLTRSLVKLIDEKRVRLNCFVKTALLDMHAKCR 313

Query: 387 HLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP 435
            +Q A+ I   +  + N V W +++S     G++     +A  L +  P
Sbjct: 314 DIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMS----SARQLFDTMP 358



 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/271 (19%), Positives = 110/271 (40%), Gaps = 21/271 (7%)

Query: 148 LAKCGKVEAAREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMI 207
             +  ++ A   VF+ +P++S  +   +             R +F  +   N+   NSM 
Sbjct: 19  FPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTFPNVFVVNSMF 78

Query: 208 SGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD 267
             +       + + L+E   + G+MP   +    + +     +L       + + K  F 
Sbjct: 79  KYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGIL-----FQALVEKLGFF 133

Query: 268 LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEM 327
            D  +   +++MY K  S+ESA  VF  I+ +K   W  +I G    G  ++A +LF   
Sbjct: 134 KDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACKLF--- 190

Query: 328 RRIGMKPH--AITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
               M P    +++  ++   +    ++   K FD M  +     +V  +  ++    + 
Sbjct: 191 ---DMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEK-----SVVSWNAMLSGYAQN 242

Query: 386 GHLQQAKNIIESM---PMRPNKVIWMSLLSS 413
           G  + A  +   M    +RPN+  W+ ++S+
Sbjct: 243 GFTEDALRLFNDMLRLGVRPNETTWVIVISA 273


>AT4G18520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10215250-10217103 REVERSE
           LENGTH=617
          Length = 617

 Score =  195 bits (496), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 120/355 (33%), Positives = 188/355 (52%), Gaps = 10/355 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M +  ++SW  +IS          A+ +F  ML+H  LP+ FT+  ++K CS   A++ G
Sbjct: 244 MEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFG 303

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARN 120
           +Q+H  V+K     D FV +SL++MYAK GE+   RKVFD M +R+ V+W S+I  +AR 
Sbjct: 304 RQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHARE 363

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAMI 176
           G  E A+ LF  M  R    +  T  ++L      G +   +E+  Q+ K +S+  N  I
Sbjct: 364 GFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIK-NSIEKNVYI 422

Query: 177 NG-----YMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
                  Y K G+   A  +  Q+P R+++SW +MISG    G   EA++  + +++EG+
Sbjct: 423 GSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGV 482

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P+  T  SAL A +    L  GR IHS   K+    +  +G++LI MY+KCG +  A  
Sbjct: 483 EPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAKCGFVSEAFR 542

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           VF ++  K L  W A+I+G   +G   +AL+L   M   G +     F  +L+ C
Sbjct: 543 VFDSMPEKNLVSWKAMIMGYARNGFCREALKLMYRMEAEGFEVDDYIFATILSTC 597



 Score =  178 bits (452), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 218/420 (51%), Gaps = 12/420 (2%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQE 59
           M +   V+W  +I  Y+     ++A  LF   + H +   +     C++  CSR    + 
Sbjct: 143 MPEKNTVTWTAMIDGYLKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFEL 202

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           G+Q+HG ++K+G G +  V+SSLV  YA+ GE+  A + FD M ++DV+SW ++I   +R
Sbjct: 203 GRQVHGNMVKVGVG-NLIVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSR 261

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREV----FDQMPKKSSVS 171
            G+   A+ +F  M +     + FT  ++L   ++   +   R+V      +M K     
Sbjct: 262 KGHGIKAIGMFIGMLNHWFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFV 321

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
             ++++ Y K G+I+  R++F  M  RN ++W S+I+ +   G   EA+ LF ++ +  L
Sbjct: 322 GTSLMDMYAKCGEISDCRKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHL 381

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           + +++T++S L A   +  L  G+ +H+ ++K+  + +  +G++L+ +Y KCG    A  
Sbjct: 382 IANNLTVVSILRACGSVGALLLGKELHAQIIKNSIEKNVYIGSTLVWLYCKCGESRDAFN 441

Query: 292 VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           V + + ++ +  WTA+I G    G   +AL+   EM + G++P+  T+   L AC++   
Sbjct: 442 VLQQLPSRDVVSWTAMISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSES 501

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLL 411
           +  G     +    + +   V     L+ +  + G + +A  + +SMP + N V W +++
Sbjct: 502 LLIGRSIHSIAKKNHAL-SNVFVGSALIHMYAKCGFVSEAFRVFDSMPEK-NLVSWKAMI 559



 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 190/370 (51%), Gaps = 16/370 (4%)

Query: 61  KQIHGYVLKIGFGFDK---FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGY 117
           K+IH   LK    FD    +  ++L++   + G++  ARKVFD M +++ V+W ++IDGY
Sbjct: 102 KRIHAMALKC---FDDQVIYFGNNLISSCVRLGDLVYARKVFDSMPEKNTVTWTAMIDGY 158

Query: 118 ARNGNVEVAMKLFDEMPSRDA-FT----WTALLDGLAKCGKVEAAREVFDQMPK---KSS 169
            + G  + A  LF++       FT    +  LL+  ++  + E  R+V   M K    + 
Sbjct: 159 LKYGLEDEAFALFEDYVKHGIRFTNERMFVCLLNLCSRRAEFELGRQVHGNMVKVGVGNL 218

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           +  ++++  Y + G++  A + F  M  +++ISW ++IS     G  ++A+ +F  +L  
Sbjct: 219 IVESSLVYFYAQCGELTSALRAFDMMEEKDVISWTAVISACSRKGHGIKAIGMFIGMLNH 278

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
             +P+  T+ S L A S    L  GR +HS +VK     D  +GTSL++MY+KCG I   
Sbjct: 279 WFLPNEFTVCSILKACSEEKALRFGRQVHSLVVKRMIKTDVFVGTSLMDMYAKCGEISDC 338

Query: 290 LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
             VF  ++N+    WT+II      G  ++A+ LF  M+R  +  + +T + +L AC   
Sbjct: 339 RKVFDGMSNRNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSV 398

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMS 409
           G +  G +    +I    I   V     LV + C+ G  + A N+++ +P R + V W +
Sbjct: 399 GALLLGKELHAQIIKN-SIEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSR-DVVSWTA 456

Query: 410 LLSSSRNHGN 419
           ++S   + G+
Sbjct: 457 MISGCSSLGH 466


>AT1G29710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10387673-10389100 FORWARD
           LENGTH=475
          Length = 475

 Score =  192 bits (488), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 187/397 (47%), Gaps = 17/397 (4%)

Query: 212 LNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV 271
           + G + EA+E+ + L  +G     + +L           L   R +H  ++      D  
Sbjct: 96  IQGNWREAVEVLDYLENKGYAMDLIRLLGLAKLCGKPEALEAARVVHECIIALVSPCDVG 155

Query: 272 LGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIG 331
              ++IEMYS C S++ AL VF+ +     G    ++     +G  ++A++LF   +  G
Sbjct: 156 ARNAIIEMYSGCCSVDDALKVFEEMPEWNSGTLCVMMRCFVNNGYGEEAIDLFTRFKEEG 215

Query: 332 MKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQA 391
            KP+   F  V + C+  G V EG+  F  M  EY IVP++EHY  +  +L  +GHL +A
Sbjct: 216 NKPNGEIFNQVFSTCTLTGDVKEGSLQFQAMYREYGIVPSMEHYHSVTKMLATSGHLDEA 275

Query: 392 KNIIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAA 451
            N +E MPM P+  +W +L++ SR HG++E+G+  A  + + D                A
Sbjct: 276 LNFVERMPMEPSVDVWETLMNLSRVHGDVELGDRCAELVEKLD----------------A 319

Query: 452 GKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKL 511
            + DKVS    +  +         S        + F   D SHPQ   IY  L  +  +L
Sbjct: 320 TRLDKVSSAGLVATKASDFVKKEPSTRSEPYFYSTFRPVDSSHPQMNIIYETLMSLRSQL 379

Query: 512 KLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDC 571
           K  G+VPDT +                     +A+   LL  + R+ I ++ N+R+  DC
Sbjct: 380 KEMGYVPDT-RYYRSLIMAMENKEQIFGYREEIAVVESLLKSKPRSAITLLTNIRIVGDC 438

Query: 572 HAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           H + KL+S I GR++I RD   +H FKNG C CN+ W
Sbjct: 439 HDMMKLMSVITGRDMIKRDAKIYHLFKNGVCRCNNLW 475


>AT4G32450.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:15661092-15662705 FORWARD
           LENGTH=537
          Length = 537

 Score =  186 bits (473), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 189/397 (47%), Gaps = 21/397 (5%)

Query: 214 GRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLG 273
           G+  +A+E+ +    EG +     +            L   + +H F+       D    
Sbjct: 160 GKVKKAVEIIKSWRNEGYVVDLPRLFWIAQLCGDAQALQEAKVVHEFITSSVGISDISAY 219

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMK 333
            S+IEMYS CGS+E AL VF ++  + L  W  +I     +G  + A++ F   ++ G K
Sbjct: 220 NSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFKQEGNK 279

Query: 334 PHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKN 393
           P    F  +  AC   G ++EG   F+ M  EY I+P +EHY  LV +L   G+L +A  
Sbjct: 280 PDGEMFKEIFFACGVLGDMNEGLLHFESMYKEYGIIPCMEHYVSLVKMLAEPGYLDEALR 339

Query: 394 IIESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAA-G 452
            +ES  M PN  +W +L++ SR HG+L +G+               C  ++  + A+   
Sbjct: 340 FVES--MEPNVDLWETLMNLSRVHGDLILGDR--------------CQDMVEQLDASRLN 383

Query: 453 KWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFI-VGDKSHPQTKAIYAKLREMSKKL 511
           K  K   V   +K   ++K+    + +      R++  GD S P+ + +Y  L+ + + +
Sbjct: 384 KESKAGLVP--VKSSDLVKEKLQRMAKGPNYGIRYMAAGDISRPENRELYMALKSLKEHM 441

Query: 512 KLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDC 571
              G+VP  S++                   R A     L+   R+ IR+MKNLRVC DC
Sbjct: 442 IEIGYVP-LSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADC 500

Query: 572 HAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           H   KL+S I GRE+I RD  RFHH K+G CSC ++W
Sbjct: 501 HNALKLMSKIVGRELISRDAKRFHHMKDGVCSCREYW 537



 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 106 DVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMP 165
           D+ ++NS+I+ Y+  G+VE A+ +F+ MP R+  TW  ++   AK G+ E A + F +  
Sbjct: 215 DISAYNSIIEMYSGCGSVEDALTVFNSMPERNLETWCGVIRCFAKNGQGEDAIDTFSRFK 274

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEV 225
           ++ +     M        +I  A  + G M    L+ + SM   Y +       + L ++
Sbjct: 275 QEGNKPDGEMFK------EIFFACGVLGDM-NEGLLHFESMYKEYGIIPCMEHYVSLVKM 327

Query: 226 LLKEGLMPSHVTILSALSAVSGL-AVLGNGRWIHSFMV--KHCFDLDGVLGTSLIEMYSK 282
           L + G +   +  + ++     L   L N   +H  ++    C D+   L  S +   SK
Sbjct: 328 LAEPGYLDEALRFVESMEPNVDLWETLMNLSRVHGDLILGDRCQDMVEQLDASRLNKESK 387

Query: 283 CG 284
            G
Sbjct: 388 AG 389


>AT2G34370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:14510482-14511891 FORWARD
           LENGTH=469
          Length = 469

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 185/391 (47%), Gaps = 16/391 (4%)

Query: 218 EAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLI 277
           EA+E+ ++L  +G +     +L        +  L   R +H  +      LD     ++I
Sbjct: 95  EALEVIDILEDKGYIVDFPRLLGLAKLCGEVEALEEARVVHDCITP----LDARSYHTVI 150

Query: 278 EMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAI 337
           EMYS C S + AL VF  +  +    W  +I  L  +G  ++A+++F      G KP   
Sbjct: 151 EMYSGCRSTDDALNVFNEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKE 210

Query: 338 TFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
            F  V  AC   G ++EG   F+ M  +Y +V ++E Y  ++++L   GHL +A + +E 
Sbjct: 211 IFKAVFFACVSIGDINEGLLHFESMYRDYGMVLSMEDYVNVIEMLAACGHLDEALDFVER 270

Query: 398 MPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKV 457
           M + P+  +W +L++     G LE+G+  A  + + D       +  + + AA      +
Sbjct: 271 MTVEPSVEMWETLMNLCWVQGYLELGDRFAELIKKLDASRMSKES-NAGLVAAKASDSAM 329

Query: 458 SHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHV 517
             ++E+   + +  D        + +++ F  GD SH  T + +   R +  ++   G V
Sbjct: 330 EKLKELRYCQMIRDDP-------KKRMHEFRAGDTSHLGTVSAF---RSLKVQMLDIGFV 379

Query: 518 PDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIRIMKNLRVCNDCHAVTKL 577
           P T +V                   +LA +  ++N E R P+ +++N+R C D H   K+
Sbjct: 380 PAT-RVCFVTVEEEEKEEQLLFRSNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKM 438

Query: 578 LSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           +S I GR +I RD  ++H +KNG CSC D+W
Sbjct: 439 ISLITGRALIQRDKKKYHFYKNGVCSCKDYW 469



 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 24/222 (10%)

Query: 77  FVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR 136
           FVQ   V+ YA+             MV+          D   +   +  A+++ D +  +
Sbjct: 60  FVQCRRVSSYAQ-------------MVNNHQSVTIETFDALCKQVKIREALEVIDILEDK 106

Query: 137 DAFTWTALLDGLAK-CGKVEA---AREVFDQMPKKSSVSWNAMINGYMKSGKINLARQLF 192
                   L GLAK CG+VEA   AR V D +    + S++ +I  Y      + A  +F
Sbjct: 107 GYIVDFPRLLGLAKLCGEVEALEEARVVHDCITPLDARSYHTVIEMYSGCRSTDDALNVF 166

Query: 193 GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG 252
            +MP RN  +W +MI     NG    A+++F   ++EG  P      +   A   +  + 
Sbjct: 167 NEMPKRNSETWGTMIRCLAKNGEGERAIDMFTRFIEEGNKPDKEIFKAVFFACVSIGDIN 226

Query: 253 NGRWIHSFMVKHCFDLDGVLG----TSLIEMYSKCGSIESAL 290
            G      M +   D   VL      ++IEM + CG ++ AL
Sbjct: 227 EGLLHFESMYR---DYGMVLSMEDYVNVIEMLAACGHLDEAL 265


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score =  145 bits (367), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 119/499 (23%), Positives = 231/499 (46%), Gaps = 33/499 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQM----LHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           P+LV ++   S      + N  L   +Q+    + H++      + C  + C    A   
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYS- 144

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLID 115
              + G V+K+G+  D    ++L+      G++  A  + D+MV+     DVV++NS+++
Sbjct: 145 ---VLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 201

Query: 116 GYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KK 167
           G  R+G+  +A+ L  +M  R    D FT++ ++D L + G ++AA  +F +M     K 
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELF 223
           S V++N+++ G  K+GK N    L   M  R    N+I++N ++  +   G+  EA EL+
Sbjct: 262 SVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELY 321

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
           + ++  G+ P+ +T  + +        L     +   MV++    D V  TSLI+ Y   
Sbjct: 322 KEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMV 381

Query: 284 GSIESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
             ++  + VF+ I+ + L      ++ ++ G    G    A ELF EM   G+ P  +T+
Sbjct: 382 KRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTY 441

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
             +L+     G +++  + F+ +  + K+   +  Y  +++ +C+ G ++ A N+  S+P
Sbjct: 442 GILLDGLCDNGKLEKALEIFEDL-QKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLP 500

Query: 400 ---MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGC-YTLLSNIYAAAGKWD 455
              ++PN + +  ++S     G+L         + E       C Y  L   +   G   
Sbjct: 501 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 560

Query: 456 KVSHVREMMKERGVLKDAG 474
             + + E MK  G   DA 
Sbjct: 561 ASAKLIEEMKSCGFSADAS 579



 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 125/286 (43%), Gaps = 51/286 (17%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           K ++V++N ++       + ND  LL + M+  +++P+  T   ++    +   +QE  +
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGY- 117
           ++  ++  G   +    ++L++ Y     +  A  + D MV      D+V++ SLI GY 
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 118 ----------------------------------ARNGNVEVAMKLFDEMPSR----DAF 139
                                              ++G +++A +LF EM S     D  
Sbjct: 380 MVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVM 439

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMINGYMKSGKINLARQLFGQM 195
           T+  LLDGL   GK+E A E+F+ + K       V +  +I G  K GK+  A  LF  +
Sbjct: 440 TYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSL 499

Query: 196 PGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
           P +    N++++  MISG    G   EA  L   + ++G  P+  T
Sbjct: 500 PCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545


>AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3134107-3135930 REVERSE
           LENGTH=607
          Length = 607

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 213/427 (49%), Gaps = 75/427 (17%)

Query: 24  DALLLFRQMLHHDLLPDGFTLPCVIKGC----SRLHAVQEGKQIHGYVLKI---GFGFDK 76
           DA+  FR    H      F +P  I+GC     R+  +     I G+ ++I   GF  + 
Sbjct: 188 DAIQCFRLSRKH-----RFDVP--IRGCGNLLDRMMKLNPTGTIWGFYMEILDAGFPLNV 240

Query: 77  FVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGYARNGNVEVAMKLFDE 132
           +V + L+N + K G +  A+KVFD++  R     VVS+N+LI+GY + GN++   +L  +
Sbjct: 241 YVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQ 300

Query: 133 MP-SR---DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGK 184
           M  SR   D FT++AL++ L K  K++ A  +FD+M K+    + V +  +I+G+ ++G+
Sbjct: 301 MEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGE 360

Query: 185 INLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILS 240
           I+L ++ + +M  +    +++ +N++++G+  NG  + A  + + +++ GL P  +T   
Sbjct: 361 IDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITY-- 418

Query: 241 ALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK-----A 295
                                            T+LI+ + + G +E+AL + K      
Sbjct: 419 ---------------------------------TTLIDGFCRGGDVETALEIRKEMDQNG 445

Query: 296 IANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEG 355
           I   ++G ++A++ G+   G    A     EM R G+KP  +T+  +++A   KG    G
Sbjct: 446 IELDRVG-FSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTG 504

Query: 356 NKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWMSLLS 412
            K    M ++   VP+V  Y  L++ LC+ G ++ A  ++++M    + P+ + + +LL 
Sbjct: 505 FKLLKEMQSDGH-VPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563

Query: 413 SSRNHGN 419
               H N
Sbjct: 564 GHHRHAN 570



 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/325 (22%), Positives = 152/325 (46%), Gaps = 28/325 (8%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +PT+VS+N +I+ Y      ++   L  QM      PD FT   +I    + + +     
Sbjct: 272 QPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHG 331

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
           +   + K G   +  + ++L++ +++ GE+ L ++ + KM+ +    D+V +N+L++G+ 
Sbjct: 332 LFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC 391

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSV 170
           +NG++  A  + D M  R    D  T+T L+DG  + G VE A E+  +M +       V
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRV 451

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVL 226
            ++A++ G  K G++  A +   +M    +    +++  M+  +   G      +L + +
Sbjct: 452 GFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEM 511

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS- 285
             +G +PS VT    L+ +  L  + N   +   M+      D +   +L+E + +  + 
Sbjct: 512 QSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLEGHHRHANS 571

Query: 286 -----------IESALAVFKAIANK 299
                      I + LA +K+I N+
Sbjct: 572 SKRYIQKPEIGIVADLASYKSIVNE 596



 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 151/351 (43%), Gaps = 47/351 (13%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVL 68
           +N++++ +      +DA  +F ++    L P   +   +I G  ++  + EG ++   + 
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302

Query: 69  KIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVS----WNSLIDGYARNGNVE 124
           K     D F  S+L+N   K  +M  A  +FD+M  R ++     + +LI G++RNG ++
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEID 362

Query: 125 VAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMI 176
           +  + + +M S+    D   +  L++G  K G + AAR + D M ++      +++  +I
Sbjct: 363 LMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLI 422

Query: 177 NGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +G+ + G +  A ++  +M    +    + +++++ G    GR ++A      +L+ G+ 
Sbjct: 423 DGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIK 482

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P  VT    + A                    C   D   G  L++     G + S +  
Sbjct: 483 PDDVTYTMMMDAF-------------------CKKGDAQTGFKLLKEMQSDGHVPSVVT- 522

Query: 293 FKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
                      +  ++ GL   G    A  L   M  IG+ P  IT+  +L
Sbjct: 523 -----------YNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 126/534 (23%), Positives = 224/534 (41%), Gaps = 104/534 (19%)

Query: 3   KPTLVSWNLIISCYVHNHRS-NDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           KPTL+++N+I++ +       N    L  +M    + PD +T   +I  C R    QE  
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGY 117
           Q+   +   GF +DK   ++L+++Y K      A KV ++MV       +V++NSLI  Y
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSS 169
           AR+G ++ AM+L ++M  +    D FT+T LL G  + GKVE+A  +F++M     K + 
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI 419

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEV 225
            ++NA I  Y   GK     ++F ++       ++++WN++++ +  NG   E   +F+ 
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           + + G +P   T                                     +LI  YS+CGS
Sbjct: 480 MKRAGFVPERETF-----------------------------------NTLISAYSRCGS 504

Query: 286 IESALAVFK----AIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            E A+ V++    A     L  +  ++  L   G+ +Q+ ++  EM     KP+ +T+  
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564

Query: 342 VLNA-----------------------------------CSHKGLVDEGNKCFDMMINEY 366
           +L+A                                   CS   L+ E  + F  +  E 
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSEL-KER 623

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR---PNKVIWMSLL---SSSRNHGNL 420
              P +     +V I  R   + +A  +++ M  R   P+   + SL+   S S + G  
Sbjct: 624 GFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKS 683

Query: 421 E--IGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           E  + E  A  +    PD    Y  +   Y    +    S +   M+  G++ D
Sbjct: 684 EEILREILAKGI---KPDIIS-YNTVIYAYCRNTRMRDASRIFSEMRNSGIVPD 733



 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/435 (22%), Positives = 190/435 (43%), Gaps = 42/435 (9%)

Query: 71  GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNGN---- 122
           GF  D +  +SL++ +A  G    A  VF KM +      ++++N +++ + + G     
Sbjct: 203 GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNK 262

Query: 123 -VEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMIN 177
              +  K+  +  + DA+T+  L+    +    + A +VF++M         V++NA+++
Sbjct: 263 ITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLD 322

Query: 178 GYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMP 233
            Y KS +   A ++  +M       +++++NS+IS Y  +G   EAMEL   + ++G  P
Sbjct: 323 VYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP 382

Query: 234 SHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF 293
              T  + LS       + +   I   M       +     + I+MY   G     + +F
Sbjct: 383 DVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIF 442

Query: 294 KAIA----NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHK 349
             I     +  +  W  ++   G +G+  +   +F EM+R G  P   TF  +++A S  
Sbjct: 443 DEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRC 502

Query: 350 GLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVI 406
           G  ++    +  M++   + P +  Y  ++  L R G  +Q++ ++  M     +PN++ 
Sbjct: 503 GSFEQAMTVYRRMLDA-GVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELT 561

Query: 407 WMSLLSSSRNHGNLEIGEYAAHNLIEA------DPDATGCYTLLSNIYAAAGKWDKVSHV 460
           + SLL +  N    EIG    H+L E       +P A     LL  +     K D +   
Sbjct: 562 YCSLLHAYAN--GKEIG--LMHSLAEEVYSGVIEPRA----VLLKTLVLVCSKCDLLPEA 613

Query: 461 REM---MKERGVLKD 472
                 +KERG   D
Sbjct: 614 ERAFSELKERGFSPD 628



 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/455 (20%), Positives = 180/455 (39%), Gaps = 66/455 (14%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V++N +IS Y  +   ++A+ L  QM      PD FT   ++ G  R   V+    I
Sbjct: 347 PSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSI 406

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGYAR 119
              +   G   +    ++ + MY   G+     K+FD++    +  D+V+WN+L+  + +
Sbjct: 407 FEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQ 466

Query: 120 NGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQM------PKK 167
           NG       +F EM      P R+  T+  L+   ++CG  E A  V+ +M      P  
Sbjct: 467 NGMDSEVSGVFKEMKRAGFVPERE--TFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDL 524

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMP-GR---NLISWNSMISGYQLNGRFL------ 217
           S+  +N ++    + G    + ++  +M  GR   N +++ S++  Y  NG+ +      
Sbjct: 525 ST--YNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA-NGKEIGLMHSL 581

Query: 218 ------------------------------EAMELFEVLLKEGLMPSHVTILSALSAVSG 247
                                         EA   F  L + G  P   T+ S +S    
Sbjct: 582 AEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGR 641

Query: 248 LAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----H 303
             ++     +  +M +  F        SL+ M+S+      +  + + I  K +      
Sbjct: 642 RQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIIS 701

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           +  +I     +     A  +F EMR  G+ P  IT+   + + +   + +E       MI
Sbjct: 702 YNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMI 761

Query: 364 NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
            ++   P    Y  +VD  C+     +AK  +E +
Sbjct: 762 -KHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795



 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 87/216 (40%), Gaps = 14/216 (6%)

Query: 268 LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALEL 323
           LD  +   +I M  K G + SA  +F  +           +T++I      G   +A+ +
Sbjct: 171 LDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNV 230

Query: 324 FMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMM--INEYKIVPTVEHYGCLVDI 381
           F +M   G KP  IT+  +LN     G     NK   ++  +    I P    Y  L+  
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGT--PWNKITSLVEKMKSDGIAPDAYTYNTLI-T 287

Query: 382 LCRAGHL-QQAKNIIESMP---MRPNKVIWMSLLS-SSRNHGNLEIGEYAAHNLIEADPD 436
            C+ G L Q+A  + E M       +KV + +LL    ++H   E  +     ++     
Sbjct: 288 CCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP 347

Query: 437 ATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           +   Y  L + YA  G  D+   ++  M E+G   D
Sbjct: 348 SIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPD 383


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 227/444 (51%), Gaps = 26/444 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P +V+ + +++ Y H+ R +DA+ L  QM+     PD FT   +I G    +   E  
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   +++ G   D     ++VN   K G++ LA  +  KM    ++ DVV +N++IDG 
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGL 268

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKK---SS 169
            +  +++ A+ LF EM ++    D FT+++L+  L   G+  +A+R + D + +K   + 
Sbjct: 269 CKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNV 328

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V+++A+I+ ++K GK+  A +L+ +M  R    ++ +++S+I+G+ ++ R  EA  +FE+
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +   P+ VT  + +        +  G  +   M +     + V  T+LI  + +   
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARD 448

Query: 286 IESALAVFKAIAN----KKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            ++A  VFK + +      +  +  ++ GL  +G   +A+ +F  ++R  M+P   T+  
Sbjct: 449 CDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 508

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM--- 398
           ++      G V++G + F   ++   + P V  Y  ++   CR G  ++A ++++ M   
Sbjct: 509 MIEGMCKAGKVEDGWELF-CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKED 567

Query: 399 -PMRPNKVIWMSLLSSSRNHGNLE 421
            P+ PN   + +L+ +    G+ E
Sbjct: 568 GPL-PNSGTYNTLIRARLRDGDRE 590



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/545 (21%), Positives = 235/545 (43%), Gaps = 39/545 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V +N ++S     ++    + L  QM    +  D +T    I    R   +     +
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGYAR 119
              ++K+G+  D    SSL+N Y     +  A  + D+MV+     D  ++ +LI G   
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
           +     A+ L D+M  R    D  T+  +++GL K G ++ A  +  +M K       V 
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 260

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+G  K   ++ A  LF +M  +    ++ +++S+IS     GR+ +A  L   ++
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +  + P+ VT  + + A      L     ++  M+K   D D    +SLI  +     ++
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F+ + +K     +  ++ +I G       ++ +ELF EM + G+  + +T+  ++
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PM 400
           +        D     F  M++   + P +  Y  L+D LC+ G L +A  + E +    M
Sbjct: 441 HGFFQARDCDNAQMVFKQMVS-VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 499

Query: 401 RPNKVIWMSLLSSSRNHGNLEIG--EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
            P+   +  ++      G +E G   +   +L    P+     T++S  +   G  ++  
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISG-FCRKGSKEEAD 558

Query: 459 HVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVP 518
            + + MKE G L ++G      R +L     GD+             E+ K+++  G   
Sbjct: 559 SLLKKMKEDGPLPNSGTYNTLIRARLRD---GDREASA---------ELIKEMRSCGFAG 606

Query: 519 DTSQV 523
           D S +
Sbjct: 607 DASTI 611


>AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23385324-23387167 REVERSE LENGTH=590
          Length = 590

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 204/418 (48%), Gaps = 22/418 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           + P++V+ N +++ + H +R ++A+ L  QM+     PD  T   ++ G  + +   E  
Sbjct: 141 YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV 200

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   ++  G   D     +++N   K GE  LA  + +KM    ++ DVV +N++IDG 
Sbjct: 201 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGL 260

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKKSS--- 169
            +  +++ A  LF++M ++    D FT+  L+  L   G+  +A+R + D + K  +   
Sbjct: 261 CKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDL 320

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR-----NLISWNSMISGYQLNGRFLEAMELFE 224
           V +NA+I+ ++K GK+  A +L+ +M        +++++N++I G+    R  E ME+F 
Sbjct: 321 VFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFR 380

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
            + + GL+ + VT  + +          N + +   MV      D +    L++     G
Sbjct: 381 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNG 440

Query: 285 SIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
           ++E+AL VF+ +  + +      +T +I  L   G  +   +LF  +   G+KP+ +T+ 
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 500

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
            +++    KGL +E +  F + + E   +P    Y  L+    R G    +  +I+ M
Sbjct: 501 TMMSGFCRKGLKEEADALF-VEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 116/516 (22%), Positives = 234/516 (45%), Gaps = 38/516 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V ++ ++S     ++ +  + L  QM +  +  + +T    I    R   +     I
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G ++K+G+G      +SL+N +     +  A  + D+MV+     D V++ +L+ G  +
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
           +     A+ L + M  +    D  T+ A+++GL K G+ + A  + ++M K       V 
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 252

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+G  K   ++ A  LF +M  +    ++ ++N +IS     GR+ +A  L   +L
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV--KHCFDLDGVLGTSLIEMYSKCGS 285
           ++ + P  V   + + A      L     ++  MV  KHCF  D V   +LI+ + K   
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFP-DVVAYNTLIKGFCKYKR 371

Query: 286 IESALAVFKAIANKKL-GH---WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           +E  + VF+ ++ + L G+   +T +I G       D A  +F +M   G+ P  +T+  
Sbjct: 372 VEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNI 431

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM- 400
           +L+   + G V+     F+ M  +  +   +  Y  +++ LC+AG ++   ++  S+ + 
Sbjct: 432 LLDGLCNNGNVETALVVFEYM-QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK 490

Query: 401 --RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDA----TGCYTLLSNIYAAAGKW 454
             +PN V + +++S     G   + E A    +E   D     +G Y  L       G  
Sbjct: 491 GVKPNVVTYTTMMSGFCRKG---LKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDE 547

Query: 455 DKVSHVREMMKERGVLKDAGC----SIVEHRGKLNR 486
              + + + M+  G   DA      + + H G+L++
Sbjct: 548 AASAELIKEMRSCGFAGDASTFGLVTNMLHDGRLDK 583


>AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26201012-26203759 REVERSE
           LENGTH=915
          Length = 915

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/457 (24%), Positives = 214/457 (46%), Gaps = 54/457 (11%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP + ++ ++I       +   A  L  QML   L+P+  T   +I G  +   +++   
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWG---EMGLARKVFDKMVDRDVVSWNSLIDGYAR 119
           +   +       +    + L+  Y K      MG+  K+ ++ V  DVV++NSLIDG  R
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVS 171
           +GN + A +L   M  R    D +T+T+++D L K  +VE A ++FD + +K    + V 
Sbjct: 475 SGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVM 534

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLL 227
           + A+I+GY K+GK++ A  +  +M  +N     +++N++I G   +G+  EA  L E ++
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMV 594

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSF-----MVKHCFDLDGVLGTSLIEMYSK 282
           K GL P+  T       +    +L +G + H++     M+      D    T+ I+ Y +
Sbjct: 595 KIGLQPTVST-----DTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649

Query: 283 CGSIESALAVFKAI----ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
            G +  A  +   +     +  L  ++++I G G  G  + A ++   MR  G +P   T
Sbjct: 650 EGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT 709

Query: 339 FIGVLNAC------SHKGLVDEGNKC-------FDMMIN------EYKIVPTVEHYGCLV 379
           F+ ++           KG   E   C       FD ++       E+ + P  + Y  L+
Sbjct: 710 FLSLIKHLLEMKYGKQKG--SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLI 767

Query: 380 DILCRAGHLQQAKNIIESMP----MRPNKVIWMSLLS 412
             +C  G+L+ A+ + + M     + P+++++ +LLS
Sbjct: 768 LGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLS 804



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/500 (23%), Positives = 224/500 (44%), Gaps = 39/500 (7%)

Query: 7   VSWNLIISCY--VHNHRSNDALL-----LFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQE 59
           + + LII CY  + N  +   L+     ++ +ML   + P+ +T   ++ G  +L  V+E
Sbjct: 177 LKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEE 236

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLID 115
             Q    +++ G   D F  +SL+  Y +  ++  A KVF++M      R+ V++  LI 
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIH 296

Query: 116 GYARNGNVEVAMKLFDEMPSRDAF----TWTALLDGLAKCG---KVEA---AREVFDQMP 165
           G      ++ AM LF +M   + F    T+T L+  L  CG   K EA    +E+ +   
Sbjct: 297 GLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL--CGSERKSEALNLVKEMEETGI 354

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAME 221
           K +  ++  +I+      K   AR+L GQM  +    N+I++N++I+GY   G   +A++
Sbjct: 355 KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVD 414

Query: 222 LFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
           + E++    L P+  T    +       V      + + M++     D V   SLI+   
Sbjct: 415 VVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473

Query: 282 KCGSIESALAVFKAIANKKL--GHW--TAIIVGLGMHGLADQALELFMEMRRIGMKPHAI 337
           + G+ +SA  +   + ++ L    W  T++I  L      ++A +LF  + + G+ P+ +
Sbjct: 474 RSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVV 533

Query: 338 TFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
            +  +++     G VDE +   + M+++   +P    +  L+  LC  G L++A  + E 
Sbjct: 534 MYTALIDGYCKAGKVDEAHLMLEKMLSK-NCLPNSLTFNALIHGLCADGKLKEATLLEEK 592

Query: 398 MP---MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA--DPDATGCYTLLSNIYAAAG 452
           M    ++P       L+      G+ +        ++ +   PDA   YT     Y   G
Sbjct: 593 MVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHT-YTTFIQTYCREG 651

Query: 453 KWDKVSHVREMMKERGVLKD 472
           +      +   M+E GV  D
Sbjct: 652 RLLDAEDMMAKMRENGVSPD 671



 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 187/450 (41%), Gaps = 94/450 (20%)

Query: 47  VIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV--- 103
           ++   +R   V E KQ++  +L+     + +  + +VN Y K G +  A +   K+V   
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248

Query: 104 -DRDVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAR 158
            D D  ++ SLI GY +  +++ A K+F+EMP     R+   +T L+ GL    +++ A 
Sbjct: 249 LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAM 308

Query: 159 EVFDQMP--------KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGY 210
           ++F +M         +  +V   ++     KS  +NL +++       N+ ++  +I   
Sbjct: 309 DLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSL 368

Query: 211 QLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDG 270
               +F +A EL   +L++GLMP+ +T                                 
Sbjct: 369 CSQCKFEKARELLGQMLEKGLMPNVITY-------------------------------- 396

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFME 326
               +LI  Y K G IE A+ V + + ++KL      +  +I G     +  +A+ +  +
Sbjct: 397 ---NALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNV-HKAMGVLNK 452

Query: 327 MRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAG 386
           M    + P  +T+  +++     G  D   +   +M N+  +VP    Y  ++D LC++ 
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM-NDRGLVPDQWTYTSMIDSLCKSK 511

Query: 387 HLQQAKNIIESMPMR---PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATGCYTL 443
            +++A ++ +S+  +   PN V+                                  YT 
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVM----------------------------------YTA 537

Query: 444 LSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
           L + Y  AGK D+   + E M  +  L ++
Sbjct: 538 LIDGYCKAGKVDEAHLMLEKMLSKNCLPNS 567


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 219/436 (50%), Gaps = 27/436 (6%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P +V+ + +++ Y H+ R +DA+ L  QM+     PD FT   +I G    +   E  
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV 208

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   +++ G   D     ++VN   K G++ LA  + +KM    +  +VV +N++ID  
Sbjct: 209 ALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSL 268

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKK---SS 169
            +  +VEVA+ LF EM ++    +  T+ +L++ L   G+  +A+R + + + KK   + 
Sbjct: 269 CKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNV 328

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEV 225
           V++NA+I+ + K GK+  A +L  +M  R++    I++N +I+G+ ++ R  EA ++F+ 
Sbjct: 329 VTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKF 388

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +  +P+  T  + ++       + +G  +   M +     + V  T++I+ + + G 
Sbjct: 389 MVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGD 448

Query: 286 IESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            +SA  VFK + + ++      ++ ++ GL  +G  D AL +F  +++  M+ +   +  
Sbjct: 449 CDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNT 508

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP-- 399
           ++      G V E    F  +     I P V  Y  ++  LC    LQ+A ++   M   
Sbjct: 509 MIEGMCKAGKVGEAWDLFCSL----SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKED 564

Query: 400 -MRPNKVIWMSLLSSS 414
              PN   + +L+ ++
Sbjct: 565 GTLPNSGTYNTLIRAN 580



 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 209/428 (48%), Gaps = 23/428 (5%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L ++++ I+C+    + + AL +  +M+     PD  TL  ++ G      + +   +  
Sbjct: 118 LYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVD 177

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNG 121
            ++++G+  D F  ++L++      +   A  + D+MV R    D+V++ ++++G  + G
Sbjct: 178 QMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRG 237

Query: 122 NVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
           ++++A+ L ++M +     +   +  ++D L K   VE A ++F +M  K    + V++N
Sbjct: 238 DIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYN 297

Query: 174 AMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           ++IN     G+ + A +L   M  +    N++++N++I  +   G+ +EA +L E +++ 
Sbjct: 298 SLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQR 357

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCGSIES 288
            + P  +T    ++       L   + +  FMV K C        T LI  + KC  +E 
Sbjct: 358 SIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNT-LINGFCKCKRVED 416

Query: 289 ALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
            + +F+ ++ + L      +T II G    G  D A  +F +M    +    +T+  +L+
Sbjct: 417 GVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLH 476

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNK 404
                G +D     F  +  + ++   +  Y  +++ +C+AG + +A ++  S+ ++P+ 
Sbjct: 477 GLCSYGKLDTALVIFKYL-QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSLSIKPDV 535

Query: 405 VIWMSLLS 412
           V + +++S
Sbjct: 536 VTYNTMIS 543



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/545 (22%), Positives = 231/545 (42%), Gaps = 42/545 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V +N ++S     ++    + L  QM    +  D +T    I    R   +     +
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
              ++K+G+  D    SSL+N Y     +  A  + D+MV+     D  ++ +LI G   
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVS 171
           +     A+ L D+M  R    D  T+  +++GL K G ++ A  + ++M     K + V 
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+   K   + +A  LF +M  +    N++++NS+I+     GR+ +A  L   +L
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           ++ + P+ VT  + + A      L     +H  M++   D D +    LI  +     ++
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +FK + +K     +  +  +I G       +  +ELF EM + G+  + +T+  ++
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTII 440

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPT-VEHYGCLVDILCRAGHLQQAKNI---IESMP 399
                 G  D     F  M++    VPT +  Y  L+  LC  G L  A  I   ++   
Sbjct: 441 QGFFQAGDCDSAQMVFKQMVSNR--VPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498

Query: 400 MRPNKVIWMSLLSSSRNHGNLEIGE-YAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
           M  N  I+ +++      G  ++GE +     +   PD     T++S +  +     +  
Sbjct: 499 MELNIFIYNTMIEGMCKAG--KVGEAWDLFCSLSIKPDVVTYNTMISGL-CSKRLLQEAD 555

Query: 459 HVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVP 518
            +   MKE G L ++G      R  L                 A   E+ K+++ +G V 
Sbjct: 556 DLFRKMKEDGTLPNSGTYNTLIRANLR------------DCDRAASAELIKEMRSSGFVG 603

Query: 519 DTSQV 523
           D S +
Sbjct: 604 DASTI 608



 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 50/302 (16%)

Query: 218 EAMELFEVLLKEGLMPSHVTILSALSAVSGL----AVLGNGRWIHSFMVKH--------- 264
           +A++LF  ++K    PS V     LSAV+ +     V+  G  + +  + H         
Sbjct: 66  DAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFI 125

Query: 265 -CF---------------------DLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG 302
            CF                     + D V  +SL+  Y     I  A+A+   +   ++G
Sbjct: 126 NCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV--EMG 183

Query: 303 H------WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGN 356
           +      +T +I GL +H  A +A+ L  +M + G +P  +T+  V+N    +G +D   
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 357 KCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI---IESMPMRPNKVIWMSLLSS 413
              + M    +I   V  +  ++D LC+  H++ A ++   +E+  +RPN V + SL++ 
Sbjct: 244 NLLNKM-EAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 414 SRNHGNLEIGEYAAHNLIEA--DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVLK 471
             N+G          N++E   +P+    +  L + +   GK  +   + E M +R +  
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVT-FNALIDAFFKEGKLVEAEKLHEEMIQRSIDP 361

Query: 472 DA 473
           D 
Sbjct: 362 DT 363


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score =  132 bits (332), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 201/452 (44%), Gaps = 56/452 (12%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P +V+ N +++ + H +R +DA+ L  QM+     PD FT   +I G  R +   E  
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   ++  G   D      +VN   K G++ LA  +  KM    ++  VV +N++ID  
Sbjct: 207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL 266

Query: 118 ARNGNVEVAMKLFDEMPSR---------------------------------------DA 138
               NV  A+ LF EM ++                                       + 
Sbjct: 267 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 326

Query: 139 FTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVSWNAMINGYMKSGKINLARQLFGQ 194
            T++AL+D   K GK+  A +++D+M K+S      +++++ING+    +++ A+ +F  
Sbjct: 327 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 386

Query: 195 MPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV 250
           M  +    N++++N++I G+    R  E MELF  + + GL+ + VT  + +        
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446

Query: 251 LGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTA 306
             N + +   MV      D +  + L++     G +E+AL VF+ +   K+      +  
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           +I G+   G  +   +LF  +   G+KP+ +T+  +++    KGL +E +  F  M  E 
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
            + P    Y  L+    R G    +  +I  M
Sbjct: 567 PL-PDSGTYNTLIRAHLRDGDKAASAELIREM 597



 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/510 (20%), Positives = 239/510 (46%), Gaps = 31/510 (6%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L +++++I+C+    + + AL +  +M+     PD  TL  ++ G    + + +   + G
Sbjct: 116 LYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVG 175

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNG 121
            ++++G+  D F  ++L++   +      A  + D+MV +    D+V++  +++G  + G
Sbjct: 176 QMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRG 235

Query: 122 NVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
           ++++A+ L  +M           +  ++D L     V  A  +F +M  K    + V++N
Sbjct: 236 DIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 295

Query: 174 AMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           ++I      G+ + A +L   M  R    N+++++++I  +   G+ +EA +L++ ++K 
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 355

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCGSIES 288
            + P   T  S ++       L   + +   M+ K CF  + V   +LI+ + K   ++ 
Sbjct: 356 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP-NVVTYNTLIKGFCKAKRVDE 414

Query: 289 ALAVFKAIANKKL-GH---WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
            + +F+ ++ + L G+   +T +I G       D A  +F +M   G+ P  +T+  +L+
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM---R 401
              + G V+     F+ +    K+ P +  Y  +++ +C+AG ++   ++  S+ +   +
Sbjct: 475 GLCNNGKVETALVVFEYL-QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 533

Query: 402 PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP-DATGCYTLLSNIYAAAG-KWDKVSH 459
           PN V + +++S     G  E  +     + E  P   +G Y  L   +   G K      
Sbjct: 534 PNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAEL 593

Query: 460 VREMMKERGVLKDAGCSIVE---HRGKLNR 486
           +REM   R V   +   +V    H G+L++
Sbjct: 594 IREMRSCRFVGDASTIGLVTNMLHDGRLDK 623



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 220/496 (44%), Gaps = 27/496 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V ++ ++S     ++ +  + L  QM +  +  + +T   +I    R   +     +
Sbjct: 79  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGYAR 119
              ++K+G+  D    +SL+N +     +  A  +  +MV+     D  ++N+LI G  R
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFR 198

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
           +     A+ L D M  +    D  T+  +++GL K G ++ A  +  +M +       V 
Sbjct: 199 HNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVI 258

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+       +N A  LF +M  +    N++++NS+I      GR+ +A  L   ++
Sbjct: 259 YNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +  + P+ VT  + + A      L     ++  M+K   D D    +SLI  +     ++
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F+ + +K     +  +  +I G       D+ +ELF EM + G+  + +T+  ++
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PM 400
           +        D     F  M+++  ++P +  Y  L+D LC  G ++ A  + E +    M
Sbjct: 439 HGFFQARECDNAQIVFKQMVSD-GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKM 497

Query: 401 RPNKVIWMSLLSSSRNHGNLEIG--EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
            P+   +  ++      G +E G   + + +L    P+     T++S       K +  +
Sbjct: 498 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADA 557

Query: 459 HVREMMKERGVLKDAG 474
             RE MKE G L D+G
Sbjct: 558 LFRE-MKEEGPLPDSG 572


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/515 (22%), Positives = 247/515 (47%), Gaps = 68/515 (13%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P +V+ + +++ Y H+ R ++A+ L  QM      P+  T   +I G    +   E  
Sbjct: 147 YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAM 206

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   ++  G   D      +VN   K G+  LA  + +KM    ++  V+ +N++IDG 
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 266

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKK---SS 169
            +  +++ A+ LF EM ++    +  T+++L+  L   G+  +A+R + D + +K     
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
            +++A+I+ ++K GK+  A +L+ +M  R    ++++++S+I+G+ ++ R  EA ++FE 
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE- 385

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCG 284
                                             FMV KHCF  D V   +LI+ + K  
Sbjct: 386 ----------------------------------FMVSKHCFP-DVVTYNTLIKGFCKYK 410

Query: 285 SIESALAVFKAIANKKL-GH---WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
            +E  + VF+ ++ + L G+   +  +I GL   G  D A E+F EM   G+ P+ +T+ 
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYN 470

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM 400
            +L+     G +++    F+ +    K+ PT+  Y  +++ +C+AG ++   ++  ++ +
Sbjct: 471 TLLDGLCKNGKLEKAMVVFEYL-QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSL 529

Query: 401 ---RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAGKWD 455
              +P+ V + +++S     G+ E  +     + E    P+ +GCY  L       G  +
Sbjct: 530 KGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN-SGCYNTLIRARLRDGDRE 588

Query: 456 KVSHVREMMKERGVLKDAGC----SIVEHRGKLNR 486
             + + + M+  G   DA      + + H G+L++
Sbjct: 589 ASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDK 623



 Score =  120 bits (300), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 117/545 (21%), Positives = 241/545 (44%), Gaps = 39/545 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P+++ ++ ++S     ++ +  + L  QM +  +  + +T   +I    R   +     +
Sbjct: 79  PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGYAR 119
            G ++K+G+  +    SSL+N Y     +  A  + D+M       + V++N+LI G   
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
           +     AM L D M ++    D  T+  +++GL K G  + A  + ++M +       + 
Sbjct: 199 HNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLI 258

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+G  K   ++ A  LF +M  +    N+++++S+IS     GR+ +A  L   ++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +  + P   T  + + A      L     ++  MVK   D   V  +SLI  +     ++
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F+ + +K     +  +  +I G   +   ++ +E+F EM + G+  + +T+  ++
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PM 400
                 G  D   + F  M+++  + P +  Y  L+D LC+ G L++A  + E +    M
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 497

Query: 401 RPNKVIWMSLLSSSRNHGNLEIG--EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
            P    +  ++      G +E G   +   +L    PD     T++S  +   G  ++  
Sbjct: 498 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISG-FCRKGSKEEAD 556

Query: 459 HVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVP 518
            + + MKE G L ++GC     R +L     GD+             E+ K+++  G   
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRD---GDREASA---------ELIKEMRSCGFAG 604

Query: 519 DTSQV 523
           D S +
Sbjct: 605 DASTI 609


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/442 (22%), Positives = 222/442 (50%), Gaps = 26/442 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           + P++V+ N +++ + H +R ++A+ L  QM+     PD  T   ++ G  + +   E  
Sbjct: 131 YGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV 190

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   ++  G   D     +++N   K GE  LA  + +KM    ++ DVV ++++ID  
Sbjct: 191 ALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSL 250

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKK---SS 169
            +  +V+ A+ LF EM ++    D FT+++L+  L   G+  +A+R + D + +K   + 
Sbjct: 251 CKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNV 310

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V++N++I+ + K GK+  A +LF +M  R    N++++NS+I+G+ ++ R  EA ++F +
Sbjct: 311 VTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTL 370

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +  +P  VT  + ++       + +G  +   M +     + V  T+LI  + +   
Sbjct: 371 MVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430

Query: 286 IESALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            ++A  VFK + +      +  +  ++ GL  +G  ++A+ +F  +++  M+P   T+  
Sbjct: 431 CDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNI 490

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNII----ES 397
           +       G V++G   F   ++   + P V  Y  ++   C+ G  ++A  +     E 
Sbjct: 491 MSEGMCKAGKVEDGWDLF-CSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549

Query: 398 MPMRPNKVIWMSLLSSSRNHGN 419
            P+ P+   + +L+ +    G+
Sbjct: 550 GPL-PDSGTYNTLIRAHLRDGD 570


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 215/442 (48%), Gaps = 26/442 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P++V+ + +++ Y H  R +DA+ L  QM+     PD  T   +I G    +   E  
Sbjct: 151 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 210

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   +++ G   +      +VN   K G+  LA  + +KM    ++ DVV +N++ID  
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSL 270

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
            +  +V+ A+ LF EM ++    +  T+++L+  L   G+   A ++   M +K    + 
Sbjct: 271 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 330

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V++NA+I+ ++K GK   A +L+  M  R    ++ ++NS+++G+ ++ R  +A ++FE 
Sbjct: 331 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 390

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +   P  VT  + +        + +G  +   M       D V  T+LI+     G 
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450

Query: 286 IESALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            ++A  VFK + +      +  ++ ++ GL  +G  ++ALE+F  M++  +K     +  
Sbjct: 451 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM--- 398
           ++      G VD+G   F   ++   + P V  Y  ++  LC    LQ+A  +++ M   
Sbjct: 511 MIEGMCKAGKVDDGWDLF-CSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 569

Query: 399 -PMRPNKVIWMSLLSSSRNHGN 419
            P+ PN   + +L+ +    G+
Sbjct: 570 GPL-PNSGTYNTLIRAHLRDGD 590



 Score =  129 bits (324), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 114/510 (22%), Positives = 244/510 (47%), Gaps = 31/510 (6%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L ++N++I+C+    + + AL L  +M+     P   TL  ++ G      + +   +  
Sbjct: 120 LYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVD 179

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNG 121
            ++++G+  D    ++L++      +   A  + D+MV R    ++V++  +++G  + G
Sbjct: 180 QMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRG 239

Query: 122 NVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
           + ++A+ L ++M +     D   +  ++D L K   V+ A  +F +M  K    + V+++
Sbjct: 240 DTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYS 299

Query: 174 AMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           ++I+     G+ + A QL   M  +    NL+++N++I  +   G+F+EA +L++ ++K 
Sbjct: 300 SLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR 359

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCGSIES 288
            + P   T  S ++       L   + +  FMV K CF  D V   +LI+ + K   +E 
Sbjct: 360 SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP-DVVTYNTLIKGFCKSKRVED 418

Query: 289 ALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
              +F+ ++++ L      +T +I GL   G  D A ++F +M   G+ P  +T+  +L+
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478

Query: 345 ACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM---R 401
              + G +++  + FD M  + +I   +  Y  +++ +C+AG +    ++  S+ +   +
Sbjct: 479 GLCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVK 537

Query: 402 PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP-DATGCYTLLSNIYAAAG-KWDKVSH 459
           PN V + +++S   +   L+        + E  P   +G Y  L   +   G K      
Sbjct: 538 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAEL 597

Query: 460 VREMMKERGVLKDAGCSIVE---HRGKLNR 486
           +REM   R V   +   +V    H G+L++
Sbjct: 598 IREMRSCRFVGDASTIGLVANMLHDGRLDK 627


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 138/546 (25%), Positives = 238/546 (43%), Gaps = 58/546 (10%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHH-DLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYV 67
           ++L+I  YV + R  D +L+F+ M+    LLP+  TL  ++ G  +        ++   +
Sbjct: 159 FDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDM 218

Query: 68  LKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGYARNGNV 123
           + +G   D ++ + ++    +  ++  A+++   M     D ++V +N LIDG  +   V
Sbjct: 219 VSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKV 278

Query: 124 EVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQM------PKKSSVSWN 173
             A+ +  ++  +    D  T+  L+ GL K  + E   E+ D+M      P +++VS  
Sbjct: 279 WEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVS-- 336

Query: 174 AMINGYMKSGKI----NLARQL--FGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +++ G  K GKI    NL +++  FG  P  NL  +N++I       +F EA  LF+ + 
Sbjct: 337 SLVEGLRKRGKIEEALNLVKRVVDFGVSP--NLFVYNALIDSLCKGRKFHEAELLFDRMG 394

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           K GL P+ VT    +        L         MV     L      SLI  + K G I 
Sbjct: 395 KIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDIS 454

Query: 288 SALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
           +A      + NKKL      +T+++ G    G  ++AL L+ EM   G+ P   TF  +L
Sbjct: 455 AAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLL 514

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR-- 401
           +     GL+ +  K F+ M  E+ + P    Y  +++  C  G + +A   ++ M  +  
Sbjct: 515 SGLFRAGLIRDAVKLFNEMA-EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGI 573

Query: 402 -PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG-------CYTLLSNIYAAAGK 453
            P+   +  L+     HG    G+ A+   +  D    G       CYT L + +   GK
Sbjct: 574 VPDTYSYRPLI-----HGLCLTGQ-ASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627

Query: 454 WDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKL 513
            ++   V + M +RGV  D  C  V         I G   H   K  +  L+EM  +   
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGV--------LIDGSLKHKDRKLFFGLLKEMHDR--- 676

Query: 514 AGHVPD 519
            G  PD
Sbjct: 677 -GLKPD 681



 Score =  122 bits (307), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 116/493 (23%), Positives = 216/493 (43%), Gaps = 60/493 (12%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P L  +N +I       + ++A LLF +M    L P+  T   +I    R   +      
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSF 424

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGYAR 119
            G ++  G     +  +SL+N + K+G++  A     +M+++     VV++ SL+ GY  
Sbjct: 425 LGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVS 171
            G +  A++L+ EM  +      +T+T LL GL + G +  A ++F++M     K + V+
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVT 544

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLI----SWNSMISGYQLNGRFLEAMELFEVLL 227
           +N MI GY + G ++ A +   +M  + ++    S+  +I G  L G+  EA    + L 
Sbjct: 545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLH 604

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           K                       GN           C +L+ +  T L+  + + G +E
Sbjct: 605 K-----------------------GN-----------C-ELNEICYTGLLHGFCREGKLE 629

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            AL+V + +  +     L  +  +I G   H        L  EM   G+KP  + +  ++
Sbjct: 630 EALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMI 689

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM-PMR- 401
           +A S  G   E    +D+MINE   VP    Y  +++ LC+AG + +A+ +   M P+  
Sbjct: 690 DAKSKTGDFKEAFGIWDLMINE-GCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSS 748

Query: 402 -PNKVIWMSLLSS-SRNHGNLEIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSH 459
            PN+V +   L   ++   +++      + +++     T  Y +L   +   G+ ++ S 
Sbjct: 749 VPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASE 808

Query: 460 VREMMKERGVLKD 472
           +   M   GV  D
Sbjct: 809 LITRMIGDGVSPD 821



 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 197/439 (44%), Gaps = 24/439 (5%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           +V +N++I       +  +A+ + + +   DL PD  T   ++ G  ++   + G ++  
Sbjct: 262 IVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMD 321

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGE----MGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
            +L + F   +   SSLV    K G+    + L ++V D  V  ++  +N+LID   +  
Sbjct: 322 EMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGR 381

Query: 122 NVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAR----EVFDQMPKKSSVSWN 173
               A  LFD M       +  T++ L+D   + GK++ A     E+ D   K S   +N
Sbjct: 382 KFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYN 441

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           ++ING+ K G I+ A     +M  + L    +++ S++ GY   G+  +A+ L+  +  +
Sbjct: 442 SLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK 501

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           G+ PS  T  + LS +    ++ +   + + M +     + V    +IE Y + G +  A
Sbjct: 502 GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKA 561

Query: 290 LAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
               K +  K +      +  +I GL + G A +A      + +   + + I + G+L+ 
Sbjct: 562 FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHG 621

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRP 402
              +G ++E       M+     +  V  YG L+D   +    +    +++ M    ++P
Sbjct: 622 FCREGKLEEALSVCQEMVQRGVDLDLV-CYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKP 680

Query: 403 NKVIWMSLLSSSRNHGNLE 421
           + VI+ S++ +    G+ +
Sbjct: 681 DDVIYTSMIDAKSKTGDFK 699



 Score = 77.0 bits (188), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 158/358 (44%), Gaps = 24/358 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP  V++N++I  Y      + A    ++M    ++PD ++   +I G        E K 
Sbjct: 539 KPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
               + K     ++   + L++ + + G++  A  V  +MV R    D+V +  LIDG  
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSL 658

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSV 170
           ++ + ++   L  EM  R    D   +T+++D  +K G  + A  ++D M  +    + V
Sbjct: 659 KHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEV 718

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLN------GRFLEAMELFE 224
           ++ A+ING  K+G +N A  L  +M   + +  N +  G  L+          +A+EL  
Sbjct: 719 TYTAVINGLCKAGFVNEAEVLCSKMQPVSSVP-NQVTYGCFLDILTKGEVDMQKAVELHN 777

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
            +LK GL+ +  T    +        +     + + M+      D +  T++I    +  
Sbjct: 778 AILK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRN 836

Query: 285 SIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
            ++ A+ ++ ++  K +      +  +I G  + G   +A EL  EM R G+ P+  T
Sbjct: 837 DVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 123/516 (23%), Positives = 242/516 (46%), Gaps = 70/516 (13%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P++V+ + +++ Y H  R +DA+ L  QM+     PD  T   +I G    +   E  
Sbjct: 76  YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 135

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   +++ G   +      +VN   K G++ LA  + +KM    ++ DVV +N++ID  
Sbjct: 136 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSL 195

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
            +  +V+ A+ LF EM ++    +  T+++L+  L   G+   A ++   M +K    + 
Sbjct: 196 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 255

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V++NA+I+ ++K GK   A +L   M  R    ++ ++NS+I+G+ ++ R  +A ++FE 
Sbjct: 256 VTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFE- 314

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMV-KHCF-DLDGVLGTSLIEMYSKC 283
                                             FMV K CF DLD     +LI+ + K 
Sbjct: 315 ----------------------------------FMVSKDCFPDLDTY--NTLIKGFCKS 338

Query: 284 GSIESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
             +E    +F+ ++++ L      +T +I GL   G  D A ++F +M   G+ P  +T+
Sbjct: 339 KRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTY 398

Query: 340 IGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP 399
             +L+   + G +++  + FD M  + +I   +  Y  +++ +C+AG +    ++  S+ 
Sbjct: 399 SILLDGLCNNGKLEKALEVFDYM-QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLS 457

Query: 400 M---RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD---PDATGCYTLLSNIYAAAGK 453
           +   +PN V + +++S   +   L+   YA    ++ D   PD+    TL+        K
Sbjct: 458 LKGVKPNVVTYNTMISGLCSKRLLQ-EAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDK 516

Query: 454 WDKVSHVREMMKERGVLKDAGCSIVE---HRGKLNR 486
                 +REM   R V   +   +V    H G+L++
Sbjct: 517 AASAELIREMRSCRFVGDASTIGLVANMLHDGRLDK 552



 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/496 (21%), Positives = 221/496 (44%), Gaps = 27/496 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++  +N ++S      + +  + L  +M    +  + +T   +I    R   +     +
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G ++K+G+       SSL+N Y     +  A  + D+MV+     D +++ +LI G   
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVS 171
           +     A+ L D M  R    +  T+  +++GL K G ++ A  + ++M     +   V 
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+   K   ++ A  LF +M  +    N+++++S+IS     GR+ +A +L   ++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           ++ + P+ VT  + + A            +H  M+K   D D     SLI  +     ++
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F+ + +K     L  +  +I G       +   ELF EM   G+    +T+  ++
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPN 403
               H G  D   K F  M+++  + P +  Y  L+D LC  G L++A  + + M     
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426

Query: 404 KV---IWMSLLSSSRNHGNLEIG--EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
           K+   I+ +++      G ++ G   + + +L    P+     T++S + +     +  +
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486

Query: 459 HVREMMKERGVLKDAG 474
            +++ MKE G L D+G
Sbjct: 487 LLKK-MKEDGPLPDSG 501


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/430 (24%), Positives = 196/430 (45%), Gaps = 23/430 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P  V +  +I      +R N+AL L  +M     +PD  T   VI G  +   + E  ++
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNV 123
              +L  GF  D      L+N   K G +  A+ +F ++   ++V +N+LI G+  +G +
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRL 369

Query: 124 EVAMKLFDEMPSR-----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNA 174
           + A  +  +M +      D  T+ +L+ G  K G V  A EV   M  K    +  S+  
Sbjct: 370 DDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTI 429

Query: 175 MINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +++G+ K GKI+ A  +  +M       N + +N +IS +    R  EA+E+F  + ++G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
             P   T  S +S +  +  + +  W+   M+      + V   +LI  + + G I+ A 
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEAR 549

Query: 291 A-----VFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
                 VF+     ++  + ++I GL   G  D+A  LF +M R G  P  I+   ++N 
Sbjct: 550 KLVNEMVFQGSPLDEI-TYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILING 608

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRP 402
               G+V+E  +    M+      P +  +  L++ LCRAG ++    +   +    + P
Sbjct: 609 LCRSGMVEEAVEFQKEMVLRGS-TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPP 667

Query: 403 NKVIWMSLLS 412
           + V + +L+S
Sbjct: 668 DTVTFNTLMS 677



 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 197/419 (47%), Gaps = 30/419 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +PT  S+N+++   V  +    A  +F  ML   + P  FT   V+K    ++ +     
Sbjct: 179 EPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALS 238

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGYA 118
           +   + K G   +  +  +L++  +K   +  A ++ ++M       D  ++N +I G  
Sbjct: 239 LLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLC 298

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNA 174
           +   +  A K+ + M  R    D  T+  L++GL K G+V+AA+++F ++PK   V +N 
Sbjct: 299 KFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNT 358

Query: 175 MINGYMKSGKINLARQLFGQMPGR-----NLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
           +I+G++  G+++ A+ +   M        ++ ++NS+I GY   G    A+E+   +  +
Sbjct: 359 LIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNK 418

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTS-----LIEMYSKCG 284
           G  P+   + S    V G   L  G+   ++ V +    DG+   +     LI  + K  
Sbjct: 419 GCKPN---VYSYTILVDGFCKL--GKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEH 473

Query: 285 SIESALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
            I  A+ +F+ +  K     +  + ++I GL        AL L  +M   G+  + +T+ 
Sbjct: 474 RIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYN 533

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVE-HYGCLVDILCRAGHLQQAKNIIESM 398
            ++NA   +G + E  K  + M+  ++  P  E  Y  L+  LCRAG + +A+++ E M
Sbjct: 534 TLINAFLRRGEIKEARKLVNEMV--FQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590



 Score =  102 bits (255), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 139/275 (50%), Gaps = 20/275 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP  V +N +IS +   HR  +A+ +FR+M      PD +T   +I G   +  ++    
Sbjct: 456 KPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
           +   ++  G   +    ++L+N + + GE+  ARK+ ++MV +    D +++NSLI G  
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLC 575

Query: 119 RNGNVEVAMKLFDEM------PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS--- 169
           R G V+ A  LF++M      PS    +   L++GL + G VE A E   +M  + S   
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSN--ISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPD 633

Query: 170 -VSWNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFE 224
            V++N++ING  ++G+I     +F ++    +    +++N+++S     G   +A  L +
Sbjct: 634 IVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLD 693

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
             +++G +P+H T    L ++     L   R+ ++
Sbjct: 694 EGIEDGFVPNHRTWSILLQSIIPQETLDRRRFYNA 728


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/545 (22%), Positives = 241/545 (44%), Gaps = 39/545 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V +N ++S     ++ +  + L  +M +  +  D ++   +I    R   +     +
Sbjct: 78  PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGYAR 119
            G ++K+G+  D    SSL+N Y     +  A  + D+M       + V++N+LI G   
Sbjct: 138 LGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFL 197

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
           +     A+ L D M +R    D FT+  +++GL K G ++ A  +  +M K       V 
Sbjct: 198 HNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVI 257

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +  +I+       +N A  LF +M  +    N++++NS+I      GR+ +A  L   ++
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +  + P+ VT  + + A      L     ++  M+K   D D    +SLI  +     ++
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F+ + +K     +  +  +I G       ++ +ELF EM + G+  + +T+  ++
Sbjct: 378 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PM 400
                 G  D   K F  M+++  + P +  Y  L+D LC+ G L++A  + E +    M
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSD-GVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496

Query: 401 RPNKVIWMSLLSSSRNHGNLEIG--EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
            P+   +  ++      G +E G   + + +L    P+     T++S       K +  +
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556

Query: 459 HVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKAIYAKLREMSKKLKLAGHVP 518
             RE MKE G L ++G      R +L     GDK         A   E+ K+++  G V 
Sbjct: 557 LFRE-MKEDGTLPNSGTYNTLIRARLRD---GDK---------AASAELIKEMRSCGFVG 603

Query: 519 DTSQV 523
           D S +
Sbjct: 604 DASTI 608



 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 130/286 (45%), Gaps = 51/286 (17%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +V++N +I C  +  R +DA  L   M+   + P+  T   +I    +   + E ++
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGYA 118
           ++  ++K     D F  SSL+N +     +  A+ +F+ M+ +D    VV++N+LI G+ 
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFC 406

Query: 119 RNGNVEVAMKLFDEMPSR---------------------------------------DAF 139
           +   VE  M+LF EM  R                                       D  
Sbjct: 407 KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDII 466

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMINGYMKSGKINLARQLFGQM 195
           T++ LLDGL K GK+E A  VF+ + K        ++N MI G  K+GK+     LF  +
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL 526

Query: 196 PGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
             +    N+I + +MISG+   G   EA  LF  + ++G +P+  T
Sbjct: 527 SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572


>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19900303-19902567 FORWARD
           LENGTH=754
          Length = 754

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/399 (25%), Positives = 175/399 (43%), Gaps = 61/399 (15%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHD-LLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           VS N+I+  +    R  DAL   ++M + D   PD +T   ++ G  +   V+   +I  
Sbjct: 260 VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMD 319

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-------------------- 105
            +L+ G+  D +  +S+++   K GE+  A +V D+M+ R                    
Sbjct: 320 VMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKEN 379

Query: 106 -------------------DVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWT 142
                              DV ++NSLI G     N  VAM+LF+EM S+    D FT+ 
Sbjct: 380 QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYN 439

Query: 143 ALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMINGYMKSGKINLARQLFGQMP-- 196
            L+D L   GK++ A  +  QM      +S +++N +I+G+ K+ K   A ++F +M   
Sbjct: 440 MLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH 499

Query: 197 --GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
              RN +++N++I G   + R  +A +L + ++ EG  P   T  S L+       +   
Sbjct: 500 GVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKA 559

Query: 255 RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTAIIVG 310
             I   M  +  + D V   +LI    K G +E A  + ++I  K +      +  +I G
Sbjct: 560 ADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQG 619

Query: 311 LGMHGLADQALELFMEMRRIGMKP-----HAITFIGVLN 344
           L       +A+ LF EM      P     + I F G+ N
Sbjct: 620 LFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658



 Score =  123 bits (308), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 118/515 (22%), Positives = 223/515 (43%), Gaps = 74/515 (14%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP + ++N++I      H+   A+L+   M  + L+PD  T   V++G            
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQG------------ 233

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDV----VSWNSLIDGYA 118
                                  Y + G++  A ++ ++MV+       VS N ++ G+ 
Sbjct: 234 -----------------------YIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFC 270

Query: 119 RNGNVEVAMKLFDEMPSRDAF-----TWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
           + G VE A+    EM ++D F     T+  L++GL K G V+ A E+ D M ++      
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV 330

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
            ++N++I+G  K G++  A ++  QM  R    N +++N++IS      +  EA EL  V
Sbjct: 331 YTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARV 390

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGR----WIHSFMVKHCFDLDGVLGTSLIEMYS 281
           L  +G++P   T     S + GL +  N R           K C + D      LI+   
Sbjct: 391 LTSKGILPDVCTF---NSLIQGLCLTRNHRVAMELFEEMRSKGC-EPDEFTYNMLIDSLC 446

Query: 282 KCGSIESALAVFKAI----ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAI 337
             G ++ AL + K +      + +  +  +I G        +A E+F EM   G+  +++
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506

Query: 338 TFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
           T+  +++       V++  +  D MI E +  P    Y  L+   CR G +++A +I+++
Sbjct: 507 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGQ-KPDKYTYNSLLTHFCRGGDIKKAADIVQA 565

Query: 398 MPM---RPNKVIWMSLLSSSRNHGNLEIGEYAAHNL----IEADPDATGCYTLLSNIYAA 450
           M      P+ V + +L+S     G +E+      ++    I   P A     ++  ++  
Sbjct: 566 MTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYN--PVIQGLFRK 623

Query: 451 AGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLN 485
               + ++  REM+++     DA    +  RG  N
Sbjct: 624 RKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCN 658


>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
           chr2:13387201-13390550 REVERSE LENGTH=918
          Length = 918

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 186/395 (47%), Gaps = 66/395 (16%)

Query: 46  CVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD- 104
            +I    R   V   K+I       G+G   +  S+L++ Y + G    A  VF+ M + 
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 105 ---RDVVSWNSLIDGYARNG-NVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEA 156
               ++V++N++ID   + G   +   K FDEM       D  T+ +LL   ++ G  EA
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357

Query: 157 AREVFDQMP----KKSSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMIS 208
           AR +FD+M     ++   S+N +++   K G+++LA ++  QMP +    N++S++++I 
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417

Query: 209 GYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL 268
           G+   GRF EA+ LF                            G  R++          L
Sbjct: 418 GFAKAGRFDEALNLF----------------------------GEMRYL-------GIAL 442

Query: 269 DGVLGTSLIEMYSKCGSIESALAVFKAIAN----KKLGHWTAIIVGLGMHGLADQALELF 324
           D V   +L+ +Y+K G  E AL + + +A+    K +  + A++ G G  G  D+  ++F
Sbjct: 443 DRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYK---IVPTVEHYGCLVDI 381
            EM+R  + P+ +T+  +++  S  GL  E  + F     E+K   +   V  Y  L+D 
Sbjct: 503 TEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIF----REFKSAGLRADVVLYSALIDA 558

Query: 382 LCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSS 413
           LC+ G +  A ++I+ M    + PN V + S++ +
Sbjct: 559 LCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDA 593



 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 181/389 (46%), Gaps = 44/389 (11%)

Query: 3   KPTLVSWNLII-SCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           +P LV++N +I +C             F +M  + + PD  T   ++  CSR    +  +
Sbjct: 300 RPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAAR 359

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM-VDR---DVVSWNSLIDGY 117
            +   +       D F  ++L++   K G+M LA ++  +M V R   +VVS++++IDG+
Sbjct: 360 NLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGF 419

Query: 118 ARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSS 169
           A+ G  + A+ LF EM     + D  ++  LL    K G+ E A ++  +M     KK  
Sbjct: 420 AKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDV 479

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V++NA++ GY K GK +  +++F +M       NL++++++I GY   G + EAME+F  
Sbjct: 480 VTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFRE 539

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEM------ 279
               GL    V   + + A+    ++G+   +   M K     + V   S+I+       
Sbjct: 540 FKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSAT 599

Query: 280 ------YSKCGSIESALAVFKAIANKKLGHWTAIIVGL--------------GMHGLADQ 319
                 YS  GS+  + +   A+   +      +   L              GM  L+  
Sbjct: 600 MDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELS-C 658

Query: 320 ALELFMEMRRIGMKPHAITFIGVLNACSH 348
            LE+F +M ++ +KP+ +TF  +LNACS 
Sbjct: 659 ILEVFRKMHQLEIKPNVVTFSAILNACSR 687



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 166/359 (46%), Gaps = 62/359 (17%)

Query: 80  SSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGYARNGNVEVAMKLFDEMPS 135
           S++++   ++G++ +A+++F+          V ++++LI  Y R+G  E A+ +F+ M  
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296

Query: 136 ----RDAFTWTALLDGLAKCG-KVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKIN 186
                +  T+ A++D   K G + +   + FD+M +       +++N+++    + G   
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWE 356

Query: 187 LARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSAL 242
            AR LF +M  R    ++ S+N+++      G+   A E+   +  + +MP+ V+     
Sbjct: 357 AARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSY---- 412

Query: 243 SAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFK-----AIA 297
                                          +++I+ ++K G  + AL +F       IA
Sbjct: 413 -------------------------------STVIDGFAKAGRFDEALNLFGEMRYLGIA 441

Query: 298 NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNK 357
             ++ + T + +   + G +++AL++  EM  +G+K   +T+  +L     +G  DE  K
Sbjct: 442 LDRVSYNTLLSIYTKV-GRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKK 500

Query: 358 CFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI---IESMPMRPNKVIWMSLLSS 413
            F  M  E+ ++P +  Y  L+D   + G  ++A  I    +S  +R + V++ +L+ +
Sbjct: 501 VFTEMKREH-VLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDA 558



 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 12/209 (5%)

Query: 274 TSLIEMYSKCGSIESALAVFKAIAN----KKLGHWTAIIVGLGMHGLA-DQALELFMEMR 328
           ++LI  Y + G  E A++VF ++        L  + A+I   G  G+   Q  + F EM+
Sbjct: 272 SALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQ 331

Query: 329 RIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHL 388
           R G++P  ITF  +L  CS  GL +     FD M N  +I   V  Y  L+D +C+ G +
Sbjct: 332 RNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR-RIEQDVFSYNTLLDAICKGGQM 390

Query: 389 QQAKNIIESMPMR---PNKVIWMSLLSSSRNHGNLE--IGEYAAHNLIEADPDATGCYTL 443
             A  I+  MP++   PN V + +++      G  +  +  +     +    D     TL
Sbjct: 391 DLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTL 450

Query: 444 LSNIYAAAGKWDKVSHVREMMKERGVLKD 472
           LS IY   G+ ++   +   M   G+ KD
Sbjct: 451 LS-IYTKVGRSEEALDILREMASVGIKKD 478


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score =  122 bits (305), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 186/404 (46%), Gaps = 21/404 (5%)

Query: 28  LFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYA 87
               M++H  +PD      +I+G  RL   ++  +I   +   G   D    + +++ Y 
Sbjct: 124 FLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYC 183

Query: 88  KWGEMGLARKVFDKM-VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAF----TWT 142
           K GE+  A  V D+M V  DVV++N+++     +G ++ AM++ D M  RD +    T+T
Sbjct: 184 KAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYT 243

Query: 143 ALLDGLAKCGKVEAAREVFDQMPKKSS----VSWNAMINGYMKSGKINLARQLFGQMPGR 198
            L++   +   V  A ++ D+M  +      V++N ++NG  K G+++ A +    MP  
Sbjct: 244 ILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSS 303

Query: 199 ----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG 254
               N+I+ N ++      GR+++A +L   +L++G  PS VT    ++ +    +LG  
Sbjct: 304 GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRA 363

Query: 255 RWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK----KLGHWTAIIVG 310
             I   M +H    + +    L+  + K   ++ A+   + + ++     +  +  ++  
Sbjct: 364 IDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTA 423

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
           L   G  + A+E+  ++   G  P  IT+  V++  +  G   +  K  D M     + P
Sbjct: 424 LCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM-RAKDLKP 482

Query: 371 TVEHYGCLVDILCRAGHLQQAKNI---IESMPMRPNKVIWMSLL 411
               Y  LV  L R G + +A       E M +RPN V + S++
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIM 526



 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/422 (20%), Positives = 196/422 (46%), Gaps = 68/422 (16%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P ++++N++IS Y      N+AL +  +M    + PD  T   +++       +++  ++
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEV 226

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
              +L+     D    + L+    +   +G A K+ D+M DR    DVV++N L++G  +
Sbjct: 227 LDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICK 286

Query: 120 NGNVEVAMKLFDEMPS----------------------------------RDAF-----T 140
            G ++ A+K  ++MPS                                  R  F     T
Sbjct: 287 EGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346

Query: 141 WTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMP 196
           +  L++ L + G +  A ++ ++MP+     +S+S+N +++G+ K  K++ A +   +M 
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMV 406

Query: 197 GR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLG 252
            R    +++++N+M++    +G+  +A+E+   L  +G  P    +++  + + GLA  G
Sbjct: 407 SRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP---VLITYNTVIDGLAKAG 463

Query: 253 -NGRWIHSFMVKHCFDL--DGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG------H 303
             G+ I         DL  D +  +SL+   S+ G ++ A+  F     +++G       
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEF--ERMGIRPNAVT 521

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           + +I++GL      D+A++  + M   G KP+  ++  ++   +++G+  E  +  + + 
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELC 581

Query: 364 NE 365
           N+
Sbjct: 582 NK 583



 Score = 95.9 bits (237), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 156/346 (45%), Gaps = 49/346 (14%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +V++N++++      R ++A+     M      P+  T   +++         + +++
Sbjct: 272 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKL 331

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGYAR 119
              +L+ GF       + L+N   + G +G A  + +KM       + +S+N L+ G+ +
Sbjct: 332 LADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK 391

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----VS 171
              ++ A++  + M SR    D  T+  +L  L K GKVE A E+ +Q+  K      ++
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLIT 451

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +I+G  K+GK   A +L  +M  ++L    I+++S++ G    G+  EA++ F    
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK-CGSI 286
           + G+ P+ VT  S +        LG      S       D        L+ M ++ C   
Sbjct: 512 RMGIRPNAVTFNSIM--------LG---LCKSRQTDRAIDF-------LVFMINRGCKPN 553

Query: 287 ESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
           E++              +T +I GL   G+A +ALEL  E+   G+
Sbjct: 554 ETS--------------YTILIEGLAYEGMAKEALELLNELCNKGL 585



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 121/245 (49%), Gaps = 16/245 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V++N++I+          A+ +  +M  H   P+  +   ++ G  +   +    + 
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGYAR 119
              ++  G   D    ++++    K G++  A ++ +++  +     ++++N++IDG A+
Sbjct: 402 LERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAK 461

Query: 120 NGNVEVAMKLFDEMPSRD----AFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
            G    A+KL DEM ++D      T+++L+ GL++ GKV+ A + F +  +     ++V+
Sbjct: 462 AGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVT 521

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N+++ G  KS + + A      M  R    N  S+  +I G    G   EA+EL   L 
Sbjct: 522 FNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELC 581

Query: 228 KEGLM 232
            +GLM
Sbjct: 582 NKGLM 586


>AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4294883-4296748 REVERSE
           LENGTH=621
          Length = 621

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 189/416 (45%), Gaps = 21/416 (5%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P L+ ++ + S      + +  L L +QM    +  + +TL  +I  C R   +     
Sbjct: 69  RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFS 128

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
             G ++K+G+  D    S+L+N     G +  A ++ D+MV+      +++ N+L++G  
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLC 188

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSV 170
            NG V  A+ L D M       +  T+  +L  + K G+   A E+  +M ++     +V
Sbjct: 189 LNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAV 248

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVL 226
            ++ +I+G  K G ++ A  LF +M  +    ++I + ++I G+   GR+ +  +L   +
Sbjct: 249 KYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDM 308

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
           +K  + P  V   + +        L     +H  M++     D V  TSLI+ + K   +
Sbjct: 309 IKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368

Query: 287 ESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGV 342
           + A  +   + +K  G     +  +I G     L D  LELF +M   G+    +T+  +
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428

Query: 343 LNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
           +      G ++   + F  M++  ++ P +  Y  L+D LC  G  ++A  I E +
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSR-RVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 186/421 (44%), Gaps = 29/421 (6%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           HKPTL++ N +++    N + +DA+LL  +M+     P+  T   V+K   +        
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
           ++   + +     D    S +++   K G +  A  +F++M       D++ + +LI G+
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
              G  +   KL  +M  R    D   ++AL+D   K GK+  A E+  +M ++     +
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDT 352

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEV 225
           V++ ++I+G+ K  +++ A  +   M     G N+ ++N +I+GY       + +ELF  
Sbjct: 353 VTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRK 412

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +   G++   VT  + +     L  L   + +   MV      D V    L++     G 
Sbjct: 413 MSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472

Query: 286 IESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            E AL +F+ I   K+    G +  II G+      D A +LF  +   G+KP   T+  
Sbjct: 473 PEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNI 532

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA----GHLQQAKNIIES 397
           ++     KG + E +  F  M  E    P     GC  +IL RA    G   ++  +IE 
Sbjct: 533 MIGGLCKKGSLSEADLLFRKM-EEDGHSPN----GCTYNILIRAHLGEGDATKSAKLIEE 587

Query: 398 M 398
           +
Sbjct: 588 I 588



 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 131/322 (40%), Gaps = 19/322 (5%)

Query: 167 KSSVSWNAMINGYMKSGKINLARQLFGQM----PGRNLISWNSMISGYQLNGRFLEAMEL 222
           K  VS+   +   +   K + A  LF +M    P   LI ++ + S      ++   ++L
Sbjct: 35  KGKVSYRERLRSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDL 94

Query: 223 FEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK 282
            + +  +G+  +  T+   ++       L         ++K  ++ D V  ++LI     
Sbjct: 95  CKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCL 154

Query: 283 CGSIESALAVFKAIANKKLGH------WTAIIVGLGMHGLADQALELFMEMRRIGMKPHA 336
            G +  AL +   +   ++GH        A++ GL ++G    A+ L   M   G +P+ 
Sbjct: 155 EGRVSEALELVDRMV--EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNE 212

Query: 337 ITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE 396
           +T+  VL      G      +    M  E KI      Y  ++D LC+ G L  A N+  
Sbjct: 213 VTYGPVLKVMCKSGQTALAMELLRKM-EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 271

Query: 397 SMPMRPNK---VIWMSLLSSSRNHGNLEIGEYAAHNLI--EADPDATGCYTLLSNIYAAA 451
            M ++  K   +I+ +L+      G  + G     ++I  +  PD    ++ L + +   
Sbjct: 272 EMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVA-FSALIDCFVKE 330

Query: 452 GKWDKVSHVREMMKERGVLKDA 473
           GK  +   + + M +RG+  D 
Sbjct: 331 GKLREAEELHKEMIQRGISPDT 352


>AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:42114-44303 REVERSE
           LENGTH=729
          Length = 729

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/495 (23%), Positives = 223/495 (45%), Gaps = 42/495 (8%)

Query: 9   WNLIISCYVHNHR---SNDALLLFRQMLHHDLLPDGFTLP-----CVIKGCSRLHAVQEG 60
           ++L+I  YV   +   +++A  L R          GFT+       +I    R+  V+  
Sbjct: 168 FDLLIRTYVQARKLREAHEAFTLLRS--------KGFTVSIDACNALIGSLVRIGWVELA 219

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEM----GLARKVFDKMVDRDVVSWNSLIDG 116
             ++  + + G G + +  + +VN   K G+M        +V +K V  D+V++N+LI  
Sbjct: 220 WGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISA 279

Query: 117 YARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----S 168
           Y+  G +E A +L + MP    S   +T+  +++GL K GK E A+EVF +M +      
Sbjct: 280 YSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPD 339

Query: 169 SVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFE 224
           S ++ +++    K G +    ++F  M  R    +L+ ++SM+S +  +G   +A+  F 
Sbjct: 340 STTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFN 399

Query: 225 VLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCG 284
            + + GL+P +V     +       ++     + + M++    +D V   +++    K  
Sbjct: 400 SVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRK 459

Query: 285 SIESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
            +  A  +F  +  + L       T +I G    G    A+ELF +M+   ++   +T+ 
Sbjct: 460 MLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYN 519

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM-- 398
            +L+     G +D   + +  M+++ +I+PT   Y  LV+ LC  GHL +A  + + M  
Sbjct: 520 TLLDGFGKVGDIDTAKEIWADMVSK-EILPTPISYSILVNALCSKGHLAEAFRVWDEMIS 578

Query: 399 -PMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAGKWD 455
             ++P  +I  S++      GN   GE     +I     PD     TL+           
Sbjct: 579 KNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSK 638

Query: 456 KVSHVREMMKERGVL 470
               V++M +E+G L
Sbjct: 639 AFGLVKKMEEEQGGL 653



 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 101/488 (20%), Positives = 198/488 (40%), Gaps = 48/488 (9%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +V++N +IS Y       +A  L   M      P  +T   VI G  +    +  K++
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVS----WNSLIDGYAR 119
              +L+ G   D     SL+    K G++    KVF  M  RDVV     ++S++  + R
Sbjct: 328 FAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTR 387

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAM 175
           +GN++ A+  F+ +       D   +T L+ G  + G +  A                  
Sbjct: 388 SGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVA------------------ 429

Query: 176 INGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSH 235
                    +NL  ++  Q    +++++N+++ G        EA +LF  + +  L P  
Sbjct: 430 ---------MNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDS 480

Query: 236 VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKA 295
            T+   +     L  L N   +   M +    LD V   +L++ + K G I++A  ++  
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWAD 540

Query: 296 IANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGL 351
           + +K++      ++ ++  L   G   +A  ++ EM    +KP  +    ++      G 
Sbjct: 541 MVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 600

Query: 352 VDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP-----MRPNKVI 406
             +G    + MI+E   VP    Y  L+    R  ++ +A  +++ M      + P+   
Sbjct: 601 ASDGESFLEKMISE-GFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFT 659

Query: 407 WMSLLSSSRNHGNLEIGEYAAHNLIE--ADPDATGCYTLLSNIYAAAGKWDKVSHVREMM 464
           + S+L        ++  E     +IE   +PD +  YT + N + +     +   + + M
Sbjct: 660 YNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRS-TYTCMINGFVSQDNLTEAFRIHDEM 718

Query: 465 KERGVLKD 472
            +RG   D
Sbjct: 719 LQRGFSPD 726



 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 145/320 (45%), Gaps = 33/320 (10%)

Query: 166 KKSSVSWNAMINGYMKSGKINLARQLFGQMPGRNLISW----NSMISGYQLNGRFLEAME 221
           K +S+S +AMI+  ++SG+++ A+    +M  R+ +S     NS+ S +   G       
Sbjct: 110 KHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCG---SNDS 166

Query: 222 LFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
           +F++L++     ++V       A     +L +  +  S  +  C  L G L         
Sbjct: 167 VFDLLIR-----TYVQARKLREAHEAFTLLRSKGFTVS--IDACNALIGSL--------V 211

Query: 282 KCGSIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAI 337
           + G +E A  V++ I+   +G        ++  L   G  ++      +++  G+ P  +
Sbjct: 212 RIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIV 271

Query: 338 TFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIES 397
           T+  +++A S KGL++E  +  + M  +    P V  Y  +++ LC+ G  ++AK +   
Sbjct: 272 TYNTLISAYSSKGLMEEAFELMNAMPGK-GFSPGVYTYNTVINGLCKHGKYERAKEVFAE 330

Query: 398 M---PMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAG 452
           M    + P+   + SLL  +   G++   E    ++   D  PD   C++ + +++  +G
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLV-CFSSMMSLFTRSG 389

Query: 453 KWDKVSHVREMMKERGVLKD 472
             DK       +KE G++ D
Sbjct: 390 NLDKALMYFNSVKEAGLIPD 409


>AT3G54980.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:20370293-20372848 FORWARD
           LENGTH=851
          Length = 851

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 195/413 (47%), Gaps = 65/413 (15%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +VS+N ++  +      + A ++F  +L   L P+ +T   +I GC R H  Q   ++
Sbjct: 476 PNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEV 535

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-----DVVSWNSLIDGYA 118
             ++       +  V  +++N   K G+   AR++   M++        +S+NS+IDG+ 
Sbjct: 536 VNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFF 595

Query: 119 RNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----V 170
           + G ++ A+  ++EM     S +  T+T+L++GL K  +++ A E+ D+M  K       
Sbjct: 596 KEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIP 655

Query: 171 SWNAMINGYMKSGKINLARQLFGQM------PGRNLISWNSMISGYQLNGRFLEAMELFE 224
           ++ A+I+G+ K   +  A  LF ++      P + +  +NS+ISG++  G  + A++L++
Sbjct: 656 AYGALIDGFCKRSNMESASALFSELLEEGLNPSQPI--YNSLISGFRNLGNMVAALDLYK 713

Query: 225 VLLKEGL---MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
            +LK+GL   + ++ T++  L        L +G  I              L + L     
Sbjct: 714 KMLKDGLRCDLGTYTTLIDGL--------LKDGNLI--------------LASELYTEMQ 751

Query: 282 KCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
             G +   +             +T I+ GL   G   + +++F EM++  + P+ + +  
Sbjct: 752 AVGLVPDEII------------YTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNA 799

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILC--RAGHLQQAK 392
           V+     +G +DE  +  D M+++  I+P     G   DIL   + G+LQ  +
Sbjct: 800 VIAGHYREGNLDEAFRLHDEMLDK-GILPD----GATFDILVSGQVGNLQPVR 847



 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 208/447 (46%), Gaps = 64/447 (14%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P  V+++++I  +  N     AL  +++M    L P  F +  +I+G  +    +E  ++
Sbjct: 372 PNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKL 431

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
                + G   + FV +++++   K G+   A ++  KM  R    +VVS+N+++ G+ R
Sbjct: 432 FDESFETGLA-NVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCR 490

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDG---------------------------- 147
             N+++A  +F  +  +    + +T++ L+DG                            
Sbjct: 491 QKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVV 550

Query: 148 -------LAKCGKVEAAREVFDQMPKK-----SSVSWNAMINGYMKSGKINLARQLFGQM 195
                  L K G+   ARE+   M ++     S +S+N++I+G+ K G+++ A   + +M
Sbjct: 551 YQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEM 610

Query: 196 PGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGL---MPSHVTILSALSAVSGL 248
            G     N+I++ S+++G   N R  +A+E+ + +  +G+   +P++  ++      S +
Sbjct: 611 CGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNM 670

Query: 249 AVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK----KLGHW 304
               +   + S +++   +    +  SLI  +   G++ +AL ++K +        LG +
Sbjct: 671 E---SASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTY 727

Query: 305 TAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN 364
           T +I GL   G    A EL+ EM+ +G+ P  I +  ++N  S KG   +  K F+ M  
Sbjct: 728 TTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEM-K 786

Query: 365 EYKIVPTVEHYGCLVDILCRAGHLQQA 391
           +  + P V  Y  ++    R G+L +A
Sbjct: 787 KNNVTPNVLIYNAVIAGHYREGNLDEA 813



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 114/503 (22%), Positives = 216/503 (42%), Gaps = 63/503 (12%)

Query: 28  LFRQMLHHDL-LPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMY 86
           L R+M    L +P   T   VI    +   + +  ++   +L  G   +    +SL+  +
Sbjct: 290 LLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGH 349

Query: 87  AKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDA 138
            K  ++  A  +FDKM       + V+++ LI+ + +NG +E A++ + +M     +   
Sbjct: 350 CKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSV 409

Query: 139 FTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS---WNAMINGYMKSGKINLARQLFGQM 195
           F    ++ G  K  K E A ++FD+  +    +    N +++   K GK + A +L  +M
Sbjct: 410 FHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKM 469

Query: 196 PGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVL 251
             R    N++S+N+++ G+        A  +F  +L++GL P++ T    +         
Sbjct: 470 ESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDE 529

Query: 252 GNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF-KAIANKKLG----HWTA 306
            N   + + M     +++GV+  ++I    K G    A  +    I  K+L      + +
Sbjct: 530 QNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNS 589

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEY 366
           II G    G  D A+  + EM   G+ P+ IT+  ++N       +D+  +  D M N+ 
Sbjct: 590 IIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNK- 648

Query: 367 KIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWMSLLSSSRNHGNL--- 420
            +   +  YG L+D  C+  +++ A  +   +    + P++ I+ SL+S  RN GN+   
Sbjct: 649 GVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAA 708

Query: 421 --------------EIGEYAA--------HNLIEAD------------PDATGCYTLLSN 446
                         ++G Y           NLI A             PD    YT++ N
Sbjct: 709 LDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEI-IYTVIVN 767

Query: 447 IYAAAGKWDKVSHVREMMKERGV 469
             +  G++ KV  + E MK+  V
Sbjct: 768 GLSKKGQFVKVVKMFEEMKKNNV 790



 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 200/473 (42%), Gaps = 60/473 (12%)

Query: 7   VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSR-LHAVQEGKQIHG 65
           V+  L++   +   +  +AL +  + +     PD       ++ C + L        +  
Sbjct: 234 VTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMANSLLRE 293

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGYARNG 121
              K      +   +S++    K G M  A ++ D+M    +  +VV+  SLI G+ +N 
Sbjct: 294 MKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNN 353

Query: 122 NVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWN 173
           ++  A+ LFD+M    PS ++ T++ L++   K G++E A E + +M       S    +
Sbjct: 354 DLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVH 413

Query: 174 AMINGYM----------------------------------KSGKINLARQLFGQMPGR- 198
            +I G++                                  K GK + A +L  +M  R 
Sbjct: 414 TIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSWLCKQGKTDEATELLSKMESRG 473

Query: 199 ---NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
              N++S+N+++ G+        A  +F  +L++GL P++ T    +          N  
Sbjct: 474 IGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNAL 533

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVF-KAIANKKLG----HWTAIIVG 310
            + + M     +++GV+  ++I    K G    A  +    I  K+L      + +II G
Sbjct: 534 EVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDG 593

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVP 370
               G  D A+  + EM   G+ P+ IT+  ++N       +D+  +  D M N+  +  
Sbjct: 594 FFKEGEMDSAVAAYEEMCGNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNK-GVKL 652

Query: 371 TVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWMSLLSSSRNHGNL 420
            +  YG L+D  C+  +++ A  +   +    + P++ I+ SL+S  RN GN+
Sbjct: 653 DIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNM 705



 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 94/465 (20%), Positives = 181/465 (38%), Gaps = 73/465 (15%)

Query: 71  GFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSW--------------NSLIDG 116
           GF  +    + L+N Y+K  +   A  + ++M++ DV+ +              NSL + 
Sbjct: 158 GFEVNSRAFNYLLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEA 217

Query: 117 ---YAR---------NGNVEVAMK--LFDEMPSR---------------DAFTWTALLDG 147
              Y+R         N   ++ M+  L +E P+                D+  ++  +  
Sbjct: 218 KELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQA 277

Query: 148 LAKCGKVEAAREVFDQMPKK-----SSVSWNAMINGYMKSGKINLARQLFGQMPGR---- 198
             K   +  A  +  +M +K     S  ++ ++I   +K G ++ A +L  +M       
Sbjct: 278 CCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISM 337

Query: 199 NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIH 258
           N+++  S+I+G+  N   + A+ LF+ + KEG  P+ VT    +          NG    
Sbjct: 338 NVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFR-----KNGEMEK 392

Query: 259 SFMVKHCFDLDGVLGT-----SLIEMYSKCGSIESALAVFKAIANKKLGH---WTAIIVG 310
           +       ++ G+  +     ++I+ + K    E AL +F       L +      I+  
Sbjct: 393 ALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVCNTILSW 452

Query: 311 LGMHGLADQALELFMEMRRIGMKPHAITFIGV-LNACSHKGLVDEGNKCFDMMINEYKIV 369
           L   G  D+A EL  +M   G+ P+ +++  V L  C  K + D     F  ++ E  + 
Sbjct: 453 LCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNM-DLARIVFSNIL-EKGLK 510

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEIGEYA 426
           P    Y  L+D   R    Q A  ++  M    +  N V++ ++++     G        
Sbjct: 511 PNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKAREL 570

Query: 427 AHNLIEADPDATGC--YTLLSNIYAAAGKWDKVSHVREMMKERGV 469
             N+IE       C  Y  + + +   G+ D      E M   G+
Sbjct: 571 LANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGI 615


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 220/457 (48%), Gaps = 59/457 (12%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P++V+ + +++ Y H  R +DA+ L  QM+     PD  T   +I G    +   E  
Sbjct: 151 YEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAV 210

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
            +   +++ G   +      +VN   K G++ LA  + +KM    ++ +VV ++++ID  
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSL 270

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKK---SS 169
            +  + + A+ LF EM ++    +  T+++L+  L    +  +A+R + D + +K   + 
Sbjct: 271 CKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNV 330

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V++NA+I+ ++K GK+  A +L+ +M  R    ++ +++S+I+G+ ++ R  EA  +FE+
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 390

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +   P+ VT                                     +LI  + K   
Sbjct: 391 MISKDCFPNVVTY-----------------------------------NTLINGFCKAKR 415

Query: 286 IESALAVFKAIANKKL-GH---WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           I+  + +F+ ++ + L G+   +T +I G       D A  +F +M   G+ P+ +T+  
Sbjct: 416 IDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNT 475

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM- 400
           +L+     G +++    F+ +    K+ PT+  Y  +++ +C+AG ++   ++  S+ + 
Sbjct: 476 LLDGLCKNGKLEKAMVVFEYL-QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 534

Query: 401 --RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEADP 435
             +P+ +I+ +++S     G  E  +     + E  P
Sbjct: 535 GVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGP 571



 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/496 (21%), Positives = 219/496 (44%), Gaps = 27/496 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++  +N ++S      + +  + L  +M    +  + +T   +I    R   +     +
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGYAR 119
            G ++K+G+       SSL+N Y     +  A  + D+MV+     D +++ +LI G   
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVS 171
           +     A+ L D M  R    +  T+  +++GL K G ++ A  + ++M     + + V 
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           ++ +I+   K    + A  LF +M  +    N+I+++S+IS      R+ +A  L   ++
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           +  + P+ VT  + + A      L     ++  M+K   D D    +SLI  +     ++
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F+ + +K     +  +  +I G       D+ +ELF EM + G+  + +T+  ++
Sbjct: 383 EAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLI 442

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PM 400
           +        D     F  M+++  + P +  Y  L+D LC+ G L++A  + E +    M
Sbjct: 443 HGFFQARDCDNAQMVFKQMVSD-GVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 501

Query: 401 RPNKVIWMSLLSSSRNHGNLEIG--EYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVS 458
            P    +  ++      G +E G   + + +L    PD     T++S  +   G  ++  
Sbjct: 502 EPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISG-FCRKGLKEEAD 560

Query: 459 HVREMMKERGVLKDAG 474
            +   M+E G L D+G
Sbjct: 561 ALFRKMREDGPLPDSG 576



 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 51/286 (17%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +++++ +ISC  +  R +DA  L   M+   + P+  T   +I    +   + E ++
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGYA 118
           ++  ++K     D F  SSL+N +     +  A+ +F+ M+ +D    VV++N+LI+G+ 
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFC 411

Query: 119 RNGNVEVAMKLFDEMPSR---------------------------------------DAF 139
           +   ++  ++LF EM  R                                       +  
Sbjct: 412 KAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIM 471

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQM 195
           T+  LLDGL K GK+E A  VF+ + +     +  ++N MI G  K+GK+     LF  +
Sbjct: 472 TYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSL 531

Query: 196 PGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
             +    ++I +N+MISG+   G   EA  LF  + ++G +P   T
Sbjct: 532 SLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPDSGT 577


>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 166/359 (46%), Gaps = 57/359 (15%)

Query: 65  GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARN 120
           G ++K+GF  D    +SL+N +     M  A  + ++MV+     DVV + ++ID   +N
Sbjct: 131 GKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKN 190

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSW 172
           G+V  A+ LFD+M +     D   +T+L++GL   G+   A  +   M K+      +++
Sbjct: 191 GHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF 250

Query: 173 NAMINGYMKSGKINLARQLFGQM----PGRNLISWNSMISGYQLNGRFLEAMELFEVLLK 228
           NA+I+ ++K GK   A +L+ +M       N+ ++ S+I+G+ + G   EA ++F ++  
Sbjct: 251 NALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET 310

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIES 288
           +G  P                                   D V  TSLI  + KC  ++ 
Sbjct: 311 KGCFP-----------------------------------DVVAYTSLINGFCKCKKVDD 335

Query: 289 ALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLN 344
           A+ +F  ++ K L      +T +I G G  G  + A E+F  M   G+ P+  T+  +L+
Sbjct: 336 AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLH 395

Query: 345 ACSHKGLVDEGNKCF-DMMINEYK-IVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMR 401
              + G V +    F DM   E   + P +  Y  L+  LC  G L++A  + E M  R
Sbjct: 396 CLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 176/353 (49%), Gaps = 23/353 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP +V +  II     N   N AL LF QM ++ + PD      ++ G       ++   
Sbjct: 174 KPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADS 233

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
           +   + K     D    ++L++ + K G+   A +++++M+      ++ ++ SLI+G+ 
Sbjct: 234 LLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC 293

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSV 170
             G V+ A ++F  M ++    D   +T+L++G  KC KV+ A ++F +M +K    +++
Sbjct: 294 MEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTI 353

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVL 226
           ++  +I G+ + GK N+A+++F  M  R    N+ ++N ++     NG+  +A+ +FE +
Sbjct: 354 TYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM 413

Query: 227 LK---EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
            K   +G+ P+  T    L  +     L     +   M K   D+  +  T +I+   K 
Sbjct: 414 QKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKA 473

Query: 284 GSIESALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
           G +++A+ +F ++ +K     +  +T +I GL   GL  +A  LF +M+  G+
Sbjct: 474 GKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526



 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 182/385 (47%), Gaps = 27/385 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +V++  +I+ +   +R  +A+ +  QM+   + PD      +I    +   V     
Sbjct: 139 EPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALS 198

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMY---AKWGEM-GLARKVFDKMVDRDVVSWNSLIDGYA 118
           +   +   G   D  + +SLVN      +W +   L R +  + +  DV+++N+LID + 
Sbjct: 199 LFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFV 258

Query: 119 RNGNVEVAMKLFDEM----PSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----V 170
           + G    A +L++EM     + + FT+T+L++G    G V+ AR++F  M  K      V
Sbjct: 259 KEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVV 318

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVL 226
           ++ ++ING+ K  K++ A ++F +M  +    N I++ ++I G+   G+   A E+F  +
Sbjct: 319 AYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHM 378

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGV---LGTSLIEMYSKC 283
           +  G+ P+  T    L  +     +     I   M K   ++DGV   + T  + ++  C
Sbjct: 379 VSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKR--EMDGVAPNIWTYNVLLHGLC 436

Query: 284 --GSIESALAVFKAIANKKLGHWTAIIV----GLGMHGLADQALELFMEMRRIGMKPHAI 337
             G +E AL VF+ +  +++            G+   G    A+ LF  +   G+KP+ +
Sbjct: 437 YNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVV 496

Query: 338 TFIGVLNACSHKGLVDEGNKCFDMM 362
           T+  +++    +GL  E +  F  M
Sbjct: 497 TYTTMISGLFREGLKHEAHVLFRKM 521



 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 31/311 (9%)

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGL----AVLGNGRWIHSFMVKHCFDLDG 270
           +F EA++LF  +++   +PS +     L+ ++ +     V+     +    V H      
Sbjct: 52  QFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSH------ 105

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLGH------WTAIIVGLGMHGLADQALELF 324
            L T  + M   C S +  LA        KLG       +T++I G  +    ++A+ + 
Sbjct: 106 DLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMV 165

Query: 325 MEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCR 384
            +M  +G+KP  + +  ++++    G V+     FD M N Y I P V  Y  LV+ LC 
Sbjct: 166 NQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN-YGIRPDVVMYTSLVNGLCN 224

Query: 385 AGHLQQAKNIIESMPMR---PNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATG 439
           +G  + A +++  M  R   P+ + + +L+ +    G     E   + +I     P+   
Sbjct: 225 SGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFT 284

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKA 499
            YT L N +   G  D+   +  +M+ +G   D    +V +   +N F    K     K 
Sbjct: 285 -YTSLINGFCMEGCVDEARQMFYLMETKGCFPD----VVAYTSLINGFCKCKKVDDAMKI 339

Query: 500 IYAKLREMSKK 510
            Y    EMS+K
Sbjct: 340 FY----EMSQK 346


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 212/513 (41%), Gaps = 73/513 (14%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +V +  +I  ++ N R  DA+ + ++M    + PD F    +I G S+   + E + 
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508

Query: 63  --------------------IHGYVLKIGFG-FDKFVQ--------------SSLVNMYA 87
                               I GY+    F   DK+V+              + L+N Y 
Sbjct: 509 FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYC 568

Query: 88  KWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAF 139
           K G++  A   +  MVD+    D  ++  L++G  +N  V+ A ++F EM  +    D F
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF 628

Query: 140 TWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQM 195
           ++  L++G +K G ++ A  +FD+M ++    + + +N ++ G+ +SG+I  A++L  +M
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688

Query: 196 PGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVL 251
             +    N +++ ++I GY  +G   EA  LF+ +  +GL+P      + +     L  +
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDV 748

Query: 252 GNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH-------- 303
                I     K C         +LI    K G  E    V   + +             
Sbjct: 749 ERAITIFGTNKKGCASSTAPF-NALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVT 807

Query: 304 WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
           +  +I  L   G  + A ELF +M+   + P  IT+  +LN     G   E    FD  I
Sbjct: 808 YNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAI 867

Query: 364 NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV---------IWMSLLSSS 414
               I P    Y  +++   + G   +A  +++ M    N V            +LLS  
Sbjct: 868 AA-GIEPDHIMYSVIINAFLKEGMTTKALVLVDQM-FAKNAVDDGCKLSISTCRALLSGF 925

Query: 415 RNHGNLEIGEYAAHNLIEAD--PDATGCYTLLS 445
              G +E+ E    N++     PD+     L++
Sbjct: 926 AKVGEMEVAEKVMENMVRLQYIPDSATVIELIN 958



 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 197/457 (43%), Gaps = 65/457 (14%)

Query: 25  ALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVN 84
           AL L   M+   L+P  +T   +I G  ++  +++ K +   +  +G   D    S L++
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLID 320

Query: 85  MYAKWGEMGLARKVFDKMVDRDV----VSWNSLIDGYARNGNVEVAMKLFDEMPSR---- 136
              K      A+ +  +MV   +      ++  I   ++ G +E A  LFD M +     
Sbjct: 321 GLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIP 380

Query: 137 DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLF 192
            A  + +L++G  +   V    E+  +M K+    S  ++  ++ G   SG ++ A  + 
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIV 440

Query: 193 GQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGL 248
            +M       N++ + ++I  +  N RF +AM + + + ++G+ P    I    S + GL
Sbjct: 441 KEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD---IFCYNSLIIGL 497

Query: 249 AVLGNGRWIHSFMV-------------------------------------KHCFDL-DG 270
           +         SF+V                                     + C  L + 
Sbjct: 498 SKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNK 557

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFME 326
           VL T LI  Y K G +  A + ++++ ++ +      +T ++ GL  +   D A E+F E
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617

Query: 327 MRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAG 386
           MR  G+ P   ++  ++N  S  G + + +  FD M+ E  + P V  Y  L+   CR+G
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEE-GLTPNVIIYNMLLGGFCRSG 676

Query: 387 HLQQAKNIIESMPMR---PNKVIWMSLLSSSRNHGNL 420
            +++AK +++ M ++   PN V + +++      G+L
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDL 713



 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 111/545 (20%), Positives = 209/545 (38%), Gaps = 157/545 (28%)

Query: 82  LVNMYAKWGEMGLARKVFDKMVDRDVV----SWNSLIDGYARNGNVEV------------ 125
           L++   +W  + L   V+  MV+R+VV    +++ LI  + R GNV++            
Sbjct: 192 LLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEF 251

Query: 126 ---------AMKLFDEMPSRD----AFTWTALLDGLAKCGKVEAAREVFDQMP----KKS 168
                    A+KL + M  +      +T+  L+DGL K  ++E A+ +  +M        
Sbjct: 252 RTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLD 311

Query: 169 SVSWNAMING--------------------------YM---------KSGKINLARQLFG 193
           + +++ +I+G                          YM         K G +  A+ LF 
Sbjct: 312 NHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFD 371

Query: 194 QMPGRNLI----SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLA 249
            M    LI    ++ S+I GY       +  EL   + K  ++ S  T  + +  +    
Sbjct: 372 GMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSG 431

Query: 250 VLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH----WT 305
            L     I   M+      + V+ T+LI+ + +      A+ V K +  + +      + 
Sbjct: 432 DLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYN 491

Query: 306 AIIVGLGMHGLADQALELFMEMRRIGMKPHAITF-------------------------- 339
           ++I+GL      D+A    +EM   G+KP+A T+                          
Sbjct: 492 SLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMREC 551

Query: 340 ---------IGVLN----------ACS-HKGLVDEG----NKCFDMMIN----------- 364
                     G++N          ACS ++ +VD+G     K + +++N           
Sbjct: 552 GVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDA 611

Query: 365 -----EYK---IVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSS 413
                E +   I P V  YG L++   + G++Q+A +I + M    + PN +I+  LL  
Sbjct: 612 EEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGG 671

Query: 414 SRNHGNLE-----IGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
               G +E     + E +   L    P+A    T++   Y  +G   +   + + MK +G
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGL---HPNAVTYCTIIDG-YCKSGDLAEAFRLFDEMKLKG 727

Query: 469 VLKDA 473
           ++ D+
Sbjct: 728 LVPDS 732


>AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10786948-10789053 REVERSE
           LENGTH=701
          Length = 701

 Score =  119 bits (298), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 200/433 (46%), Gaps = 29/433 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P+ ++ N ++   V       A  +F +M    ++PD  +   ++ GC R   +QE  + 
Sbjct: 180 PSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMVIGCFRDGKIQEADRW 239

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGYAR 119
              +++ GF  D    + ++    + G +  A   F KM+D     +++++ SLIDG  +
Sbjct: 240 LTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCK 299

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSV----- 170
            G+++ A ++ +EM       + +T TAL+DGL K G  E A  +F ++ +  +      
Sbjct: 300 KGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVH 359

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGRNLI----SWNSMISGYQLNGRFLEAMELFEVL 226
           ++ +MI GY K  K+N A  LF +M  + L     ++ ++I+G+   G F  A EL  ++
Sbjct: 360 TYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLM 419

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSI 286
             EG MP+  T  +A+ ++   +       + +       + DGV  T LI+   K   I
Sbjct: 420 GDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDI 479

Query: 287 ESALAVFKAI------ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFI 340
             ALA F  +      A+ +L +   +I          ++  LF  +  +G+ P   T+ 
Sbjct: 480 NQALAFFCRMNKTGFEADMRLNN--ILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYT 537

Query: 341 GVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPM 400
            +++    +G +D   K F  M   +  VP    YG L+  LC+   + +A  + E+M  
Sbjct: 538 SMISCYCKEGDIDLALKYFHNM-KRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMID 596

Query: 401 R---PNKVIWMSL 410
           R   P +V  ++L
Sbjct: 597 RGLSPPEVTRVTL 609



 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/254 (21%), Positives = 108/254 (42%), Gaps = 20/254 (7%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           +KP + ++  +I  Y    + N A +LF +M    L P+  T   +I G  +  +     
Sbjct: 354 YKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAY 413

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
           ++   +   GF  + +  ++ ++   K      A ++ +K     ++ D V++  LI   
Sbjct: 414 ELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQ 473

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFD------QMPKK 167
            +  ++  A+  F  M       D      L+    +  K++ +  +F        +P K
Sbjct: 474 CKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTK 533

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI----SWNSMISGYQLNGRFLEAMELF 223
              ++ +MI+ Y K G I+LA + F  M     +    ++ S+ISG        EA +L+
Sbjct: 534 E--TYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLY 591

Query: 224 EVLLKEGLMPSHVT 237
           E ++  GL P  VT
Sbjct: 592 EAMIDRGLSPPEVT 605



 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/280 (21%), Positives = 115/280 (41%), Gaps = 42/280 (15%)

Query: 144 LLDGLAKCGKV-EAAREVFD---QMPKKSSVSWNAMINGYMKSGKINLARQLFGQMPGRN 199
           +L   ++ G++ EA   V D   Q    SS++ N ++   ++ G I  A  +F +M  R 
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 212

Query: 200 LI----SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGR 255
           ++    S+  M+ G   +G+  EA      +++ G +P + T    L+A+    ++    
Sbjct: 213 VVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAI 272

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHG 315
           W    M+   F  + +  TSLI+   K GSI+                            
Sbjct: 273 WYFRKMIDLGFKPNLINFTSLIDGLCKKGSIK---------------------------- 304

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY 375
              QA E+  EM R G KP+  T   +++    +G  ++  + F  ++      P V  Y
Sbjct: 305 ---QAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTY 361

Query: 376 GCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLS 412
             ++   C+   L +A+ +   M    + PN   + +L++
Sbjct: 362 TSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score =  119 bits (298), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/487 (21%), Positives = 219/487 (44%), Gaps = 61/487 (12%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P  ++++ +++ +    R ++A+ L  +M+     PD  T+  +I G      V E  
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGY 117
            +   +++ GF  D+     ++N   K G   LA  +F KM +R+    VV ++ +ID  
Sbjct: 196 VLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 255

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK----VEAAREVFDQMPKKSS 169
            ++G+ + A+ LF+EM  +    D  T+++L+ GL   GK     +  RE+  +      
Sbjct: 256 CKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDV 315

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEV 225
           V+++A+I+ ++K GK+  A++L+ +M  R +    I++NS+I G+       EA ++F++
Sbjct: 316 VTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDL 375

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +G  P  VT                                    + LI  Y K   
Sbjct: 376 MVSKGCEPDIVTY-----------------------------------SILINSYCKAKR 400

Query: 286 IESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           ++  + +F+ I++K L      +  +++G    G  + A ELF EM   G+ P  +T+  
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 342 VLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP-- 399
           +L+     G +++  + F+ M  + ++   +  Y  ++  +C A  +  A ++  S+   
Sbjct: 461 LLDGLCDNGELNKALEIFEKM-QKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDK 519

Query: 400 -MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE--ADPDATGCYTLLSNIYAAAGKWDK 456
            ++P+ V +  ++      G+L   +     + E    PD      L+      +G    
Sbjct: 520 GVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISS 579

Query: 457 VSHVREM 463
           V  + EM
Sbjct: 580 VELIEEM 586



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 187/415 (45%), Gaps = 21/415 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           PT + +N + S      + +  L   + M  + +  D +T+  +I    R   +     +
Sbjct: 68  PTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSV 127

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G   K+G+  D    S+LVN +   G +  A  + D+MV+     D+V+ ++LI+G   
Sbjct: 128 LGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCL 187

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVS 171
            G V  A+ L D M       D  T+  +L+ L K G    A ++F +M     K S V 
Sbjct: 188 KGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 247

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           ++ +I+   K G  + A  LF +M  +    ++++++S+I G   +G++ +  ++   ++
Sbjct: 248 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
              ++P  VT  + +        L   + +++ M+      D +   SLI+ + K   + 
Sbjct: 308 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLH 367

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +F  + +K     +  ++ +I         D  + LF E+   G+ P+ IT+  ++
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
                 G ++   + F  M++   + P+V  YG L+D LC  G L +A  I E M
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSR-GVPPSVVTYGILLDGLCDNGELNKALEIFEKM 481


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score =  118 bits (296), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 205/415 (49%), Gaps = 21/415 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++V +N ++S  V   + +  + L ++M    +  D +T   VI        V     I
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGYAR 119
            G +LK+G+  D+    SLVN + +   +  A  + DKMV+     D+V++N++ID   +
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKKSS---VS 171
              V  A   F E+  +    +  T+TAL++GL    +  +AAR + D + KK +   ++
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 172 WNAMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEVLL 227
           ++A+++ ++K+GK+  A++LF +M       ++++++S+I+G  L+ R  EA ++F++++
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
            +G +   V+  + ++       + +G  +   M +     + V   +LI+ + + G ++
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382

Query: 288 SALAVFKAI----ANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A   F  +     +  +  +  ++ GL  +G  ++AL +F +M++  M    +T+  V+
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVI 442

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
                 G V+E    F   ++   + P +  Y  ++  LC  G L + + +   M
Sbjct: 443 RGMCKTGKVEEAWSLF-CSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKM 496



 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/384 (24%), Positives = 190/384 (49%), Gaps = 28/384 (7%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           L ++N++I+C+    + + AL +  +ML     PD  T+  ++ G  R + V +   +  
Sbjct: 120 LYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVD 179

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-----DVVSWNSLIDGYARN 120
            +++IG+  D    +++++   K   +  A   F K ++R     +VV++ +L++G   +
Sbjct: 180 KMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFF-KEIERKGIRPNVVTYTALVNGLCNS 238

Query: 121 GNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS----VSW 172
                A +L  +M  +    +  T++ALLD   K GKV  A+E+F++M + S     V++
Sbjct: 239 SRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTY 298

Query: 173 NAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLK 228
           +++ING     +I+ A Q+F  M  +    +++S+N++I+G+    R  + M+LF  + +
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQ 358

Query: 229 EGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVK-HCFDLDGVLGTSLIEMYSKC--GS 285
            GL+ + VT  +    + G    G+      F  +   F +   + T  I +   C  G 
Sbjct: 359 RGLVSNTVTYNTL---IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415

Query: 286 IESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           +E AL +F+ +  +++      +T +I G+   G  ++A  LF  +   G+KP  +T+  
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTT 475

Query: 342 VLNACSHKGLVDEGNKCFDMMINE 365
           +++    KGL+ E    +  M  E
Sbjct: 476 MMSGLCTKGLLHEVEALYTKMKQE 499



 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 170/358 (47%), Gaps = 20/358 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P  V+   +++ +   +R +DA+ L  +M+     PD      +I    +   V +  
Sbjct: 151 YEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAF 210

Query: 62  QIHGYVLKIGFGFDKFVQSSLVN---MYAKWGEMG-LARKVFDKMVDRDVVSWNSLIDGY 117
                + + G   +    ++LVN     ++W +   L   +  K +  +V+++++L+D +
Sbjct: 211 DFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAF 270

Query: 118 ARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS---- 169
            +NG V  A +LF+EM       D  T+++L++GL    +++ A ++FD M  K      
Sbjct: 271 VKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADV 330

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNLIS----WNSMISGYQLNGRFLEAMELFEV 225
           VS+N +ING+ K+ ++    +LF +M  R L+S    +N++I G+   G   +A E F  
Sbjct: 331 VSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQ 390

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +   G+ P   T    L  +     L     I   M K   DLD V  T++I    K G 
Sbjct: 391 MDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK 450

Query: 286 IESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITF 339
           +E A ++F +++ K L      +T ++ GL   GL  +   L+ +M++ G+  +  T 
Sbjct: 451 VEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 508



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 149/322 (46%), Gaps = 24/322 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +P +V++  +++   ++ R +DA  L   M+   + P+  T   ++    +   V E K+
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
           +   ++++    D    SSL+N       +  A ++FD MV +    DVVS+N+LI+G+ 
Sbjct: 282 LFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFC 341

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSV 170
           +   VE  MKLF EM  R    +  T+  L+ G  + G V+ A+E F QM          
Sbjct: 342 KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIW 401

Query: 171 SWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVL 226
           ++N ++ G   +G++  A  +F  M  R    +++++ ++I G    G+  EA  LF  L
Sbjct: 402 TYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSL 461

Query: 227 LKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS------FMVKHCFDLDG--VLGTSLIE 278
             +GL P  VT  + +S +    +L     +++       M   C   DG   L   LI+
Sbjct: 462 SLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIK 521

Query: 279 MYSKCGSIESALAVFKAIANKK 300
               CG   S L   K+   KK
Sbjct: 522 KMLSCGYAPSLLKDIKSGVCKK 543



 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/378 (18%), Positives = 162/378 (42%), Gaps = 50/378 (13%)

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFD 162
           +V +N L+    +    +V + L  +M       D +T+  +++    C +V  A  +  
Sbjct: 85  IVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILG 144

Query: 163 QMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNG 214
           +M K       V+  +++NG+ +  +++ A  L  +M       +++++N++I       
Sbjct: 145 KMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTK 204

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGT 274
           R  +A + F+ + ++G+ P+ VT  + ++ +   +   +   + S M+K     + +  +
Sbjct: 205 RVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS 264

Query: 275 SLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           +L++ + K G +                                +A ELF EM R+ + P
Sbjct: 265 ALLDAFVKNGKVL-------------------------------EAKELFEEMVRMSIDP 293

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI 394
             +T+  ++N       +DE N+ FD+M+++  +   V  Y  L++  C+A  ++    +
Sbjct: 294 DIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVV-SYNTLINGFCKAKRVEDGMKL 352

Query: 395 IESMPMR---PNKVIWMSLLSSSRNHGNLEIGE--YAAHNLIEADPDATGCYTLLSNIYA 449
              M  R    N V + +L+      G+++  +  ++  +     PD    Y +L     
Sbjct: 353 FREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPD-IWTYNILLGGLC 411

Query: 450 AAGKWDKVSHVREMMKER 467
             G+ +K   + E M++R
Sbjct: 412 DNGELEKALVIFEDMQKR 429



 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 129/311 (41%), Gaps = 37/311 (11%)

Query: 218 EAMELFEVLLKEGLMPSHVTILSALSAVSGL----AVLGNGRWIHSFMVKHCFDLDGVLG 273
           +A++LF  ++K    PS V     LSA+  L     V+  G+ +    +++    D    
Sbjct: 68  DAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRN----DLYTF 123

Query: 274 TSLIEMYSKCGSIESALAVFKAIANKKLGHWT------AIIVGLGMHGLADQALELFMEM 327
             +I  +  C  +  AL++   +   KLG+        +++ G         A+ L  +M
Sbjct: 124 NIVINCFCCCFQVSLALSILGKML--KLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM 181

Query: 328 RRIGMKPHAITFIGVLNA-CSHKGLVDEGNKCFDMM--INEYKIVPTVEHYGCLVDILCR 384
             IG KP  + +  ++++ C  K +    N  FD    I    I P V  Y  LV+ LC 
Sbjct: 182 VEIGYKPDIVAYNAIIDSLCKTKRV----NDAFDFFKEIERKGIRPNVVTYTALVNGLCN 237

Query: 385 AGHLQQAKNIIESM---PMRPNKVIWMSLLSSSRNHGN-LEIGE-YAAHNLIEADPDATG 439
           +     A  ++  M    + PN + + +LL +   +G  LE  E +     +  DPD   
Sbjct: 238 SSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVT 297

Query: 440 CYTLLSNIYAAAGKWDKVSHVREMMKERGVLKDAGCSIVEHRGKLNRFIVGDKSHPQTKA 499
            Y+ L N      + D+ + + ++M  +G L D    +V +   +N F    +     K 
Sbjct: 298 -YSSLINGLCLHDRIDEANQMFDLMVSKGCLAD----VVSYNTLINGFCKAKRVEDGMKL 352

Query: 500 IYAKLREMSKK 510
                REMS++
Sbjct: 353 ----FREMSQR 359


>AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22598038-22601688 FORWARD
           LENGTH=1136
          Length = 1136

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 214/472 (45%), Gaps = 63/472 (13%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           + PT+V++N ++  Y    R   A+ L   M    +  D  T   +I    R + + +G 
Sbjct: 264 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKG- 322

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNG 121
               Y+L                           R +  +M+  + V++N+LI+G++  G
Sbjct: 323 ----YLL--------------------------LRDMRKRMIHPNEVTYNTLINGFSNEG 352

Query: 122 NVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
            V +A +L +EM S     +  T+ AL+DG    G  + A ++F  M  K    S VS+ 
Sbjct: 353 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 412

Query: 174 AMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            +++G  K+ + +LAR  + +M    +    I++  MI G   NG   EA+ L   + K+
Sbjct: 413 VLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD 472

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESA 289
           G+ P  VT  + ++    +      + I   + +     +G++ ++LI    + G ++ A
Sbjct: 473 GIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEA 532

Query: 290 LAVFKA--IANKKLGHWT--AIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           + +++A  +      H+T   ++  L   G   +A E    M   G+ P+ ++F  ++N 
Sbjct: 533 IRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLING 592

Query: 346 CSHKGLVDEGNKCFDMMINEYKIV--PTVEHYGCLVDILCRAGHLQQAKNIIESM---PM 400
             + G   EG K F +     K+   PT   YG L+  LC+ GHL++A+  ++S+   P 
Sbjct: 593 YGNSG---EGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPA 649

Query: 401 RPNKVIWMSLLSSSRNHGNLE-----IGEYAAHNLIEADPDATGCYTLLSNI 447
             + V++ +LL++    GNL       GE    +++   PD+    +L+S +
Sbjct: 650 AVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSIL---PDSYTYTSLISGL 698



 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 100/440 (22%), Positives = 203/440 (46%), Gaps = 38/440 (8%)

Query: 9   WNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGY-- 66
           ++++I  Y+      D+L +FR M  +   P  +T   ++        V+ G+ +  +  
Sbjct: 166 YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGS-----VVKSGEDVSVWSF 220

Query: 67  ---VLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
              +LK     D    + L+N+    G    +  +  KM        +V++N+++  Y +
Sbjct: 221 LKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCK 280

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAA----REVFDQMPKKSSVS 171
            G  + A++L D M S+    D  T+  L+  L +  ++       R++  +M   + V+
Sbjct: 281 KGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVT 340

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLL 227
           +N +ING+   GK+ +A QL  +M    L    +++N++I G+   G F EA+++F ++ 
Sbjct: 341 YNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMME 400

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
            +GL PS V+    L  +   A     R  +  M ++   +  +  T +I+   K G ++
Sbjct: 401 AKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLD 460

Query: 288 SALAVFKAIA----NKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A+ +   ++    +  +  ++A+I G    G    A E+   + R+G+ P+ I +  ++
Sbjct: 461 EAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 520

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEH--YGCLVDILCRAGHLQQAKNIIESMP-- 399
             C   G + E  + ++ MI E     T +H  +  LV  LC+AG + +A+  +  M   
Sbjct: 521 YNCCRMGCLKEAIRIYEAMILEGH---TRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSD 577

Query: 400 -MRPNKVIWMSLLSSSRNHG 418
            + PN V +  L++   N G
Sbjct: 578 GILPNTVSFDCLINGYGNSG 597



 Score = 83.6 bits (205), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 142/322 (44%), Gaps = 29/322 (9%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +V+++ +I+ +    R   A  +  ++    L P+G     +I  C R+  ++E  +I
Sbjct: 476 PDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRI 535

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
           +  ++  G   D F  + LV    K G++  A +    M       + VS++ LI+GY  
Sbjct: 536 YEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGN 595

Query: 120 NGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQM----PKKSSVS 171
           +G    A  +FDEM         FT+ +LL GL K G +  A +    +        +V 
Sbjct: 596 SGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVM 655

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLI----SWNSMISGYQLNGRFLEAMELF--EV 225
           +N ++    KSG +  A  LFG+M  R+++    ++ S+ISG    G+ + A+ LF  E 
Sbjct: 656 YNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAI-LFAKEA 714

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFD-----LDGVLGTSLIEMY 280
             +  ++P+ V     +       +   G+W      +   D      D V   ++I+ Y
Sbjct: 715 EARGNVLPNKVMYTCFVD-----GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGY 769

Query: 281 SKCGSIESALAVFKAIANKKLG 302
           S+ G IE    +   + N+  G
Sbjct: 770 SRMGKIEKTNDLLPEMGNQNGG 791



 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 99/480 (20%), Positives = 193/480 (40%), Gaps = 73/480 (15%)

Query: 7    VSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSR----LHAVQEGKQ 62
            V +N +++    +     A+ LF +M+   +LPD +T   +I G  R    + A+   K+
Sbjct: 654  VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKE 713

Query: 63   IH--GYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-----DVVSWNSLID 115
                G VL      +K + +  V+   K G+   A   F + +D      D+V+ N++ID
Sbjct: 714  AEARGNVLP-----NKVMYTCFVDGMFKAGQWK-AGIYFREQMDNLGHTPDIVTTNAMID 767

Query: 116  GYARNGNVEVAMKLFDEMPSRDA----FTWTALLDGLAKCGKVEAAREVFDQ------MP 165
            GY+R G +E    L  EM +++      T+  LL G +K   V  +  ++        +P
Sbjct: 768  GYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILP 827

Query: 166  KKSSV---------------------------------SWNAMINGYMKSGKINLARQLF 192
             K +                                  ++N +I+    +G+IN A  L 
Sbjct: 828  DKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLV 887

Query: 193  GQMPGRNLI----SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGL 248
              M    +     + ++M+S    N RF E+  +   + K+G+ P     +  ++ +  +
Sbjct: 888  KVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRV 947

Query: 249  AVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAII 308
              +     +   M+ H      V  ++++   +KCG  + A  + + +   KL    A  
Sbjct: 948  GDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASF 1007

Query: 309  VGLGMH-----GLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMI 363
              L MH     G   +ALEL + M   G+K   +++  ++     KG +    + ++ M 
Sbjct: 1008 TTL-MHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMK 1066

Query: 364  NEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNLEIG 423
             +  +     +   +  +L R      A  I++ +  R   +  MSL  S  +H NL++ 
Sbjct: 1067 GDGFLANATTYKALIRGLLARETAFSGADIILKDLLAR-GFITSMSL--SQDSHRNLKMA 1123



 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 123/266 (46%), Gaps = 19/266 (7%)

Query: 4    PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
            P L ++N+++  Y      + + LL+R ++ + +LPD  T   ++ G    + ++ G +I
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 851

Query: 64   HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGYAR 119
                +  G   D++  + L++     GE+  A  +   M    +  D  + ++++    R
Sbjct: 852  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 911

Query: 120  NGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPK----KSSVS 171
            N   + +  +  EM     S ++  +  L++GL + G ++ A  V ++M        +V+
Sbjct: 912  NHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVA 971

Query: 172  WNAMINGYMKSGKINLARQLFGQMPGRNLI----SWNSMISGYQLNGRFLEAMELFEVLL 227
             +AM+    K GK + A  L   M    L+    S+ +++     NG  +EA+EL  V+ 
Sbjct: 972  ESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMS 1031

Query: 228  KEGL---MPSHVTILSALSAVSGLAV 250
              GL   + S+  +++ L A   +A+
Sbjct: 1032 NCGLKLDLVSYNVLITGLCAKGDMAL 1057


>AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13930379-13932493 FORWARD
           LENGTH=704
          Length = 704

 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/536 (21%), Positives = 250/536 (46%), Gaps = 68/536 (12%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIH----- 64
           N+++     N     A+ L R+M  + L+PD F+   VI+G      +++  ++      
Sbjct: 146 NILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKG 205

Query: 65  ---------------------------GYVLK---IGFGFDKFVQSSLVNMYAKWGEMGL 94
                                      G++ +   +G   D  V +SL+  +   GE+  
Sbjct: 206 SGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDR 265

Query: 95  ARKVFDKMVDRD----VVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLD 146
            + +FD++++R      +++N+LI G+ + G ++ A ++F+ M  R    + +T+T L+D
Sbjct: 266 GKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLID 325

Query: 147 GLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNL-- 200
           GL   GK + A ++ + M +K    ++V++N +IN   K G +  A ++   M  R    
Sbjct: 326 GLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385

Query: 201 --ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV---LGNGR 255
             I++N ++ G    G   EA +L  ++LK+    +   ++S  + + GL     L    
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLKDS-SYTDPDVISYNALIHGLCKENRLHQAL 444

Query: 256 WIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL----GHWTAIIVGL 311
            I+  +V+     D V    L+    K G +  A+ ++K I++ K+      +TA+I G 
Sbjct: 445 DIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504

Query: 312 GMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPT 371
              G+ + A  L  +MR   ++P    +  +L++   +G +D+  + F+ M  +    P 
Sbjct: 505 CKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PD 563

Query: 372 VEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEIGEYAAH 428
           V  +  ++D   +AG ++ A++++  M    + P+   +  L++     G L+       
Sbjct: 564 VVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFD 623

Query: 429 NLIEA--DPDATGCYTLLSNIYAAAGKWDKVSHVREMMKERGVL--KDAGCSIVEH 480
            ++++  +PDA  C ++L     + G+ DK++ + + + ++ ++  K+  C+++++
Sbjct: 624 KMVDSGFEPDAHICDSVLKYCI-SQGETDKLTELVKKLVDKDIVLDKELTCTVMDY 678



 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/318 (22%), Positives = 140/318 (44%), Gaps = 18/318 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
            +P  V++N+II+    +    DA+ +   M      PD  T   ++ G      + E  
Sbjct: 348 EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEAS 407

Query: 62  QIHGYVLKIGFGFDKFVQS--SLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLID 115
           ++   +LK     D  V S  +L++   K   +  A  ++D +V++    D V+ N L++
Sbjct: 408 KLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLN 467

Query: 116 GYARNGNVEVAMKLFDEMPS----RDAFTWTALLDGLAKCGKVEAAREVFDQMP----KK 167
              + G+V  AM+L+ ++      R++ T+TA++DG  K G +  A+ +  +M     + 
Sbjct: 468 STLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQP 527

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRN----LISWNSMISGYQLNGRFLEAMELF 223
           S   +N +++   K G ++ A +LF +M   N    ++S+N MI G    G    A  L 
Sbjct: 528 SVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLL 587

Query: 224 EVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKC 283
             + + GL P   T    ++    L  L         MV   F+ D  +  S+++     
Sbjct: 588 VGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQ 647

Query: 284 GSIESALAVFKAIANKKL 301
           G  +    + K + +K +
Sbjct: 648 GETDKLTELVKKLVDKDI 665



 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 152/368 (41%), Gaps = 27/368 (7%)

Query: 95  ARKVFDKMVDRD---VVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKC 151
           A  VF + VD       + N+L+    R+ N E+A   + +M   D F     L GL +C
Sbjct: 57  AVSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLEC 116

Query: 152 ----GKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRNLI-- 201
                K   A  V   M K+    +  + N ++ G  ++ +   A  L  +M   +L+  
Sbjct: 117 YVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPD 176

Query: 202 --SWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHS 259
             S+N++I G+       +A+EL   +   G   S VT    + A      +        
Sbjct: 177 VFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLK 236

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTAIIVGLGMHG 315
            M     + D V+ TSLI  +  CG ++   A+F  +  +        +  +I G    G
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHY 375
              +A E+F  M   G++P+  T+ G+++     G   E  +  ++MI E    P    Y
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMI-EKDEEPNAVTY 355

Query: 376 GCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE 432
             +++ LC+ G +  A  I+E M     RP+ + +  LL      G+L+      + +++
Sbjct: 356 NIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLK 415

Query: 433 ----ADPD 436
                DPD
Sbjct: 416 DSSYTDPD 423


>AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:2328000-2329610 REVERSE
           LENGTH=536
          Length = 536

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 142/266 (53%), Gaps = 19/266 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGK 61
           +P +V++N +I  +  ++  N A  +F+ +    +  PD  T   +I G  +   ++E  
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGY 117
            +   +L++G        + LV+ YAK GEM  A ++  KM+      DVV++ SLIDGY
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-- 171
            R G V    +L++EM +R    +AFT++ L++ L    ++  ARE+  Q+  K  +   
Sbjct: 358 CRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417

Query: 172 --WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
             +N +I+G+ K+GK+N A  +  +M  +    + I++  +I G+ + GR  EA+ +F  
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHK 477

Query: 226 LLKEGLMPSHVTILSALSAV--SGLA 249
           ++  G  P  +T+ S LS +  +G+A
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMA 503



 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 181/406 (44%), Gaps = 55/406 (13%)

Query: 82  LVNMYAKWGEMGLARKVFDKMVDRD--VVSWNSLIDGYARNGNVEVAMKLFDE----MPS 135
           LV+ +A+ G++  A  +  +  + +   +  NSL++   +   VE AMKLFDE       
Sbjct: 144 LVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSC 203

Query: 136 RDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMINGYMKSGKINLARQL 191
            D  T+  L+ GL   GK E A E+   M     +   V++N +I G+ KS ++N A ++
Sbjct: 204 NDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEM 263

Query: 192 F-----GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
           F     G +   +++++ SMISGY   G+  EA  L + +L+ G+ P++VT    +   +
Sbjct: 264 FKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYA 323

Query: 247 GLAVLGNGRWIHSFMVKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWT 305
               +     I   M+   CF  D V  TSLI+ Y + G +                   
Sbjct: 324 KAGEMLTAEEIRGKMISFGCFP-DVVTFTSLIDGYCRVGQV------------------- 363

Query: 306 AIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE 365
                        Q   L+ EM   GM P+A T+  ++NA  ++  + +  +    + ++
Sbjct: 364 ------------SQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411

Query: 366 YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEI 422
             I+P    Y  ++D  C+AG + +A  I+E M     +P+K+ +  L+      G +  
Sbjct: 412 -DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFE 470

Query: 423 GEYAAHNLIE--ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
                H ++     PD     +LLS +   AG   +  H+ ++ ++
Sbjct: 471 AVSIFHKMVAIGCSPDKITVSSLLSCLL-KAGMAKEAYHLNQIARK 515



 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 155/367 (42%), Gaps = 56/367 (15%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLK 69
           N +++  V   R  DA+ LF + L      D  T   +I+G   +   ++  ++ G +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234

Query: 70  IGFGFDKFVQSSLVNMYAKWGEMGLARKVFD-----KMVDRDVVSWNSLIDGYARNGNVE 124
            G   D    ++L+  + K  E+  A ++F       +   DVV++ S+I GY + G + 
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMR 294

Query: 125 VAMKLFDEMPSRDAF----TWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMI 176
            A  L D+M     +    T+  L+DG AK G++  A E+  +M         V++ ++I
Sbjct: 295 EASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLI 354

Query: 177 NGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +GY + G+++   +L+ +M  R    N  +++ +I+      R L+A EL   L  + ++
Sbjct: 355 DGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII 414

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P                          FM              +I+ + K G +  A  +
Sbjct: 415 P------------------------QPFMY-----------NPVIDGFCKAGKVNEANVI 439

Query: 293 FKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
            + +  KK       +T +I+G  M G   +A+ +F +M  IG  P  IT   +L+    
Sbjct: 440 VEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLK 499

Query: 349 KGLVDEG 355
            G+  E 
Sbjct: 500 AGMAKEA 506



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 16/266 (6%)

Query: 219 AMELFEVLLKEGLMPSH--VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSL 276
           A ++FE +  +G+ P++  +  L +  A  G         + SF V+ C     ++  SL
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGC----CMVVNSL 177

Query: 277 IEMYSKCGSIESALAVF----KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
           +    K   +E A+ +F    +  +      +  +I GL   G A++ALEL   M   G 
Sbjct: 178 LNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGC 237

Query: 333 KPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAK 392
           +P  +T+  ++        +++ ++ F  + +     P V  Y  ++   C+AG +++A 
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297

Query: 393 NIIESM---PMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE--ADPDATGCYTLLSNI 447
           ++++ M    + P  V +  L+      G +   E     +I     PD    +T L + 
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT-FTSLIDG 356

Query: 448 YAAAGKWDKVSHVREMMKERGVLKDA 473
           Y   G+  +   + E M  RG+  +A
Sbjct: 357 YCRVGQVSQGFRLWEEMNARGMFPNA 382


>AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:2328000-2329610 REVERSE
           LENGTH=536
          Length = 536

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 142/266 (53%), Gaps = 19/266 (7%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLL-PDGFTLPCVIKGCSRLHAVQEGK 61
           +P +V++N +I  +  ++  N A  +F+ +    +  PD  T   +I G  +   ++E  
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVD----RDVVSWNSLIDGY 117
            +   +L++G        + LV+ YAK GEM  A ++  KM+      DVV++ SLIDGY
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVS-- 171
            R G V    +L++EM +R    +AFT++ L++ L    ++  ARE+  Q+  K  +   
Sbjct: 358 CRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQP 417

Query: 172 --WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
             +N +I+G+ K+GK+N A  +  +M  +    + I++  +I G+ + GR  EA+ +F  
Sbjct: 418 FMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHK 477

Query: 226 LLKEGLMPSHVTILSALSAV--SGLA 249
           ++  G  P  +T+ S LS +  +G+A
Sbjct: 478 MVAIGCSPDKITVSSLLSCLLKAGMA 503



 Score =  109 bits (272), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 181/406 (44%), Gaps = 55/406 (13%)

Query: 82  LVNMYAKWGEMGLARKVFDKMVDRD--VVSWNSLIDGYARNGNVEVAMKLFDE----MPS 135
           LV+ +A+ G++  A  +  +  + +   +  NSL++   +   VE AMKLFDE       
Sbjct: 144 LVSSFAEKGKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSC 203

Query: 136 RDAFTWTALLDGLAKCGKVEAAREVFDQMP----KKSSVSWNAMINGYMKSGKINLARQL 191
            D  T+  L+ GL   GK E A E+   M     +   V++N +I G+ KS ++N A ++
Sbjct: 204 NDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEM 263

Query: 192 F-----GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
           F     G +   +++++ SMISGY   G+  EA  L + +L+ G+ P++VT    +   +
Sbjct: 264 FKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYA 323

Query: 247 GLAVLGNGRWIHSFMVKH-CFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWT 305
               +     I   M+   CF  D V  TSLI+ Y + G +                   
Sbjct: 324 KAGEMLTAEEIRGKMISFGCFP-DVVTFTSLIDGYCRVGQV------------------- 363

Query: 306 AIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE 365
                        Q   L+ EM   GM P+A T+  ++NA  ++  + +  +    + ++
Sbjct: 364 ------------SQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK 411

Query: 366 YKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLEI 422
             I+P    Y  ++D  C+AG + +A  I+E M     +P+K+ +  L+      G +  
Sbjct: 412 -DIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFE 470

Query: 423 GEYAAHNLIE--ADPDATGCYTLLSNIYAAAGKWDKVSHVREMMKE 466
                H ++     PD     +LLS +   AG   +  H+ ++ ++
Sbjct: 471 AVSIFHKMVAIGCSPDKITVSSLLSCLL-KAGMAKEAYHLNQIARK 515



 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 155/367 (42%), Gaps = 56/367 (15%)

Query: 10  NLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLK 69
           N +++  V   R  DA+ LF + L      D  T   +I+G   +   ++  ++ G +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSG 234

Query: 70  IGFGFDKFVQSSLVNMYAKWGEMGLARKVFD-----KMVDRDVVSWNSLIDGYARNGNVE 124
            G   D    ++L+  + K  E+  A ++F       +   DVV++ S+I GY + G + 
Sbjct: 235 FGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMR 294

Query: 125 VAMKLFDEMPSRDAF----TWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMI 176
            A  L D+M     +    T+  L+DG AK G++  A E+  +M         V++ ++I
Sbjct: 295 EASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLI 354

Query: 177 NGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLM 232
           +GY + G+++   +L+ +M  R    N  +++ +I+      R L+A EL   L  + ++
Sbjct: 355 DGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDII 414

Query: 233 PSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAV 292
           P                          FM              +I+ + K G +  A  +
Sbjct: 415 P------------------------QPFMY-----------NPVIDGFCKAGKVNEANVI 439

Query: 293 FKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSH 348
            + +  KK       +T +I+G  M G   +A+ +F +M  IG  P  IT   +L+    
Sbjct: 440 VEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLK 499

Query: 349 KGLVDEG 355
            G+  E 
Sbjct: 500 AGMAKEA 506



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 114/266 (42%), Gaps = 16/266 (6%)

Query: 219 AMELFEVLLKEGLMPSH--VTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSL 276
           A ++FE +  +G+ P++  +  L +  A  G         + SF V+ C     ++  SL
Sbjct: 122 AGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGC----CMVVNSL 177

Query: 277 IEMYSKCGSIESALAVF----KAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGM 332
           +    K   +E A+ +F    +  +      +  +I GL   G A++ALEL   M   G 
Sbjct: 178 LNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGC 237

Query: 333 KPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAK 392
           +P  +T+  ++        +++ ++ F  + +     P V  Y  ++   C+AG +++A 
Sbjct: 238 EPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREAS 297

Query: 393 NIIESM---PMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIE--ADPDATGCYTLLSNI 447
           ++++ M    + P  V +  L+      G +   E     +I     PD    +T L + 
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVT-FTSLIDG 356

Query: 448 YAAAGKWDKVSHVREMMKERGVLKDA 473
           Y   G+  +   + E M  RG+  +A
Sbjct: 357 YCRVGQVSQGFRLWEEMNARGMFPNA 382


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 170/357 (47%), Gaps = 31/357 (8%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P +V+ + +I+ +   +R  DA+ L  +M      PD      +I G  ++  V +  
Sbjct: 135 YEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAV 194

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGY 117
           ++   + + G   D    +SLV      G    A ++   MV RD    V+++ ++ID +
Sbjct: 195 ELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVF 254

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS---- 169
            + G    AMKL++EM  R    D FT+ +L++GL   G+V+ A+++ D M  K      
Sbjct: 255 VKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDV 314

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEV 225
           V++N +ING+ KS +++   +LF +M  R L    I++N++I GY   GR   A E+F  
Sbjct: 315 VTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSR 374

Query: 226 LLKEGLMPSHVTILSALS----AVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYS 281
           +     + ++  +L  L         L +  N       M K   +LD      +I    
Sbjct: 375 MDSRPNIRTYSILLYGLCMNWRVEKALVLFEN-------MQKSEIELDITTYNIVIHGMC 427

Query: 282 KCGSIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKP 334
           K G++E A  +F++++ K L      +T +I G       D++  L+ +M+  G+ P
Sbjct: 428 KIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484



 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 179/422 (42%), Gaps = 65/422 (15%)

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFD 162
           +V ++ ++   A++ N ++ + LF  M       D +++  +++ L +C +   A  V  
Sbjct: 69  IVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVG 128

Query: 163 QMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNG 214
           +M K       V+ +++ING+ +  ++  A  L  +M       +++ +N++I G    G
Sbjct: 129 KMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIG 188

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRW-----IHSFMVKHCFDLD 269
              +A+ELF+ + ++G+    VT     S V+GL    +GRW     +   MV      +
Sbjct: 189 LVNDAVELFDRMERDGVRADAVT---YNSLVAGLCC--SGRWSDAARLMRDMVMRDIVPN 243

Query: 270 GVLGTSLIEMYSKCGSIESALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFM 325
            +  T++I+++ K G    A+ +++ +  +     +  + ++I GL MHG  D+A ++  
Sbjct: 244 VITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLD 303

Query: 326 EMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
            M   G  P  +T+  ++N       VDEG K F  M     +  T+  Y  ++    +A
Sbjct: 304 LMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTIT-YNTIIQGYFQA 362

Query: 386 GHLQQAKNIIESMPMRPN----KVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD------- 434
           G    A+ I   M  RPN     ++   L  + R    L + E    + IE D       
Sbjct: 363 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIV 422

Query: 435 --------------------------PDATGCYTLLSNIYAAAGKWDKVSHVREMMKERG 468
                                     PD     T++S  +    +WDK   +   M+E G
Sbjct: 423 IHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISG-FCRKRQWDKSDLLYRKMQEDG 481

Query: 469 VL 470
           +L
Sbjct: 482 LL 483


>AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4184163-4186076 REVERSE
           LENGTH=637
          Length = 637

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 193/415 (46%), Gaps = 21/415 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           PT++ ++ + S      + +  L L +QM    +  + +TL  +I    R   +      
Sbjct: 86  PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 145

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G ++K+G+  +    S+L+N     G +  A ++ D+MV+     D+++ N+L++G   
Sbjct: 146 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 205

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVS 171
           +G    AM L D+M       +A T+  +L+ + K G+   A E+  +M +++    +V 
Sbjct: 206 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           ++ +I+G  K G ++ A  LF +M  +    N+I++N +I G+   GR+ +  +L   ++
Sbjct: 266 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 325

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           K  + P+ VT    + +      L     +H  M+      D +  TSLI+ + K   ++
Sbjct: 326 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 385

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A  +   + +K     +  +  +I G       D  LELF +M   G+    +T+  ++
Sbjct: 386 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLI 445

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
                 G ++   + F  M++  K+ P +  Y  L+D LC  G  ++A  I E +
Sbjct: 446 QGFCELGKLNVAKELFQEMVSR-KVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499



 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 169/381 (44%), Gaps = 20/381 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           HKP L++ N +++    + +  +A+LL  +M+ +   P+  T   V+    +        
Sbjct: 189 HKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAM 248

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
           ++   + +     D    S +++   K G +  A  +F++M    +  +++++N LI G+
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 308

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
              G  +   KL  +M  R    +  T++ L+D   K GK+  A E+  +M  +     +
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDT 368

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           +++ ++I+G+ K   ++ A Q+   M  +    N+ ++N +I+GY    R  + +ELF  
Sbjct: 369 ITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +   G++   VT  + +     L  L   + +   MV      + V    L++     G 
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488

Query: 286 IESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
            E AL +F+ I   K+    G +  II G+      D A +LF  +   G+KP   T+  
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNI 548

Query: 342 VLNACSHKGLVDEGNKCFDMM 362
           ++     KG + E    F  M
Sbjct: 549 MIGGLCKKGPLSEAELLFRKM 569



 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 141/332 (42%), Gaps = 74/332 (22%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           ++++N++I  + +  R +D   L R M+   + P+  T   +I    +   ++E +++H 
Sbjct: 298 IITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHK 357

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR-------------------- 105
            ++  G   D    +SL++ + K   +  A ++ D MV +                    
Sbjct: 358 EMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKAN 417

Query: 106 -------------------DVVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWT 142
                              D V++N+LI G+   G + VA +LF EM SR    +  T+ 
Sbjct: 418 RIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYK 477

Query: 143 ALLDGLAKCGKVEAAREVFDQMPKKSSVS-----WNAMINGYMKSGKINLARQLFGQMPG 197
            LLDGL   G+ E A E+F+++ +KS +      +N +I+G   + K++ A  LF  +P 
Sbjct: 478 ILLDGLCDNGESEKALEIFEKI-EKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 536

Query: 198 R----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGN 253
           +     + ++N MI G    G   EA  LF  + ++G  P                    
Sbjct: 537 KGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDG------------------ 578

Query: 254 GRWIHSFMVK-HCFDLDGVLGTSLIEMYSKCG 284
             W ++ +++ H  D D      LIE   +CG
Sbjct: 579 --WTYNILIRAHLGDGDATKSVKLIEELKRCG 608



 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 134/317 (42%), Gaps = 38/317 (11%)

Query: 177 NGYMKSGKINLARQL-------FGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            G ++   IN   +L       F     RNL S+   +    ++ +  +A++LF  ++  
Sbjct: 24  TGTLRIALINCPNELSFCCERGFSAFSDRNL-SYRERLRSGLVDIKADDAIDLFRDMIHS 82

Query: 230 GLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHC--FDLDGVLG-----TSLIEMYSK 282
             +P+ +      SA++           +  ++  C   +L G+       + +I  + +
Sbjct: 83  RPLPTVIDFSRLFSAIAKTKQ-------YDLVLALCKQMELKGIAHNLYTLSIMINCFCR 135

Query: 283 CGSIESALAVFKAIANKKLGH------WTAIIVGLGMHGLADQALELFMEMRRIGMKPHA 336
           C  +  A +    I   KLG+      ++ +I GL + G   +ALEL   M  +G KP  
Sbjct: 136 CRKLCLAFSAMGKII--KLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193

Query: 337 ITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIE 396
           IT   ++N     G   E     D M+ EY   P    YG +++++C++G    A  ++ 
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMV-EYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 252

Query: 397 SMPMRPNK---VIWMSLLSSSRNHGNLEIGEYAAHNLIEADPDATG--CYTLLSNIYAAA 451
            M  R  K   V +  ++     HG+L+   +   N +E     T    Y +L   +  A
Sbjct: 253 KMEERNIKLDAVKYSIIIDGLCKHGSLD-NAFNLFNEMEMKGITTNIITYNILIGGFCNA 311

Query: 452 GKWDKVSH-VREMMKER 467
           G+WD  +  +R+M+K +
Sbjct: 312 GRWDDGAKLLRDMIKRK 328


>AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:326136-327815 REVERSE
           LENGTH=559
          Length = 559

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 115/470 (24%), Positives = 212/470 (45%), Gaps = 56/470 (11%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQM-LHHDLL--PDGFTLPCVIKGCSRLHAVQE 59
           +P ++S+N +I  +  N     A L+   +   H  +  PD  +   +  G S++  + E
Sbjct: 88  EPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGFICKPDIVSFNSLFNGFSKMKMLDE 147

Query: 60  GKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLID 115
                G +LK     +    S+ ++ + K GE+ LA K F  M    +  +VV++  LID
Sbjct: 148 VFVYMGVMLKCC-SPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLID 206

Query: 116 GYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK---- 167
           GY + G++EVA+ L+ EM     S +  T+TAL+DG  K G+++ A E++ +M +     
Sbjct: 207 GYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEP 266

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELF 223
           +S+ +  +I+G+ + G  + A +   +M  +    ++ ++  +ISG   NG+  EA E+ 
Sbjct: 267 NSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGVIISGLCGNGKLKEATEIV 326

Query: 224 EVLLKEGLMPSHVTILSALSA-------------------------VSGLAVLGNG---- 254
           E + K  L+P  V   + ++A                         V  L+ + +G    
Sbjct: 327 EDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKN 386

Query: 255 RWIHSFMVKHCFD-LDGVLGTSLIEMYSKCGSIESALAVFKAIANKKL----GHWTAIIV 309
             +H  +V  C +  + V+ T LI+   K G       +F  I+   L      +T+ I 
Sbjct: 387 GQLHEAIVYFCIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVPDKFMYTSWIA 446

Query: 310 GLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIV 369
           GL   G    A +L   M + G+    + +  ++   + KGL+ E  + FD M+N   I 
Sbjct: 447 GLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNS-GIS 505

Query: 370 PTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGN 419
           P    +  L+    + G++  A +++  M  R   V  +S    S+  GN
Sbjct: 506 PDSAVFDLLIRAYEKEGNMAAASDLLLDM-QRRGLVTAVSDADCSKQCGN 554



 Score = 89.7 bits (221), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 186/419 (44%), Gaps = 25/419 (5%)

Query: 24  DALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLV 83
           +AL    ++     LPD FT    I      +      +   Y++  G+   +   +S+V
Sbjct: 4   EALQFLSRLRKSSNLPDPFTCNKHIHQLINSNCGILSLKFLAYLVSRGYTPHRSSFNSVV 63

Query: 84  NMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSRDAF 139
           +   K G++  A  +   M     + DV+S+NSLIDG+ RNG++  A  + + + +   F
Sbjct: 64  SFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLESLRASHGF 123

Query: 140 -------TWTALLDGLAKCGKVEAAREVFDQMPKKSS---VSWNAMINGYMKSGKINLAR 189
                  ++ +L +G +K   ++        M K  S   V+++  I+ + KSG++ LA 
Sbjct: 124 ICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKSGELQLAL 183

Query: 190 QLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAV 245
           + F  M       N++++  +I GY   G    A+ L++ + +  +  + VT  + +   
Sbjct: 184 KSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGF 243

Query: 246 SGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANK----KL 301
                +     ++S MV+   + + ++ T++I+ + + G  ++A+     + N+     +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303

Query: 302 GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDM 361
             +  II GL  +G   +A E+  +M +  + P  + F  ++NA    G +      +  
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363

Query: 362 MINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKVIWMSLLSSSRNHGNL 420
           +I E    P V     ++D + + G L +A  I+     + N V++  L+ +    G+ 
Sbjct: 364 LI-ERGFEPDVVALSTMIDGIAKNGQLHEA--IVYFCIEKANDVMYTVLIDALCKEGDF 419


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score =  115 bits (289), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 199/431 (46%), Gaps = 24/431 (5%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           PT++ +N + S      +    L L +QM    +    +TL  +I    R   +      
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G ++K+G+  D  + ++L+N       +  A ++ D+MV+      +++ N+L++G   
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKS----SVS 171
           NG V  A+ L D M       +  T+  +L+ + K G+   A E+  +M +++    +V 
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           ++ +I+G  K G ++ A  LF +M  +    ++I++N++I G+   GR+ +  +L   ++
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
           K  + P+ VT    + +      L     +   M++     + +   SLI+ + K   +E
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 288 SALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            A+ +   + +K     +  +  +I G       D  LELF EM   G+  + +T+  ++
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNI---IESMPM 400
                 G ++   K F  M++  ++ P +  Y  L+D LC  G L++A  I   IE   M
Sbjct: 446 QGFCQSGKLEVAKKLFQEMVSR-RVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504

Query: 401 RPNKVIWMSLL 411
             +  I+M ++
Sbjct: 505 ELDIGIYMIII 515



 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 202/418 (48%), Gaps = 23/418 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           ++P  V +N +++      R ++AL L  +M+     P   TL  ++ G      V +  
Sbjct: 154 YEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAV 213

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGY 117
            +   +++ GF  ++     ++N+  K G+  LA ++  KM +R    D V ++ +IDG 
Sbjct: 214 VLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGL 273

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKKSS--- 169
            ++G+++ A  LF+EM  +    D  T+  L+ G    G+  + A+ + D + +K S   
Sbjct: 274 CKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNV 333

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           V+++ +I+ ++K GK+  A QL  +M  R    N I++NS+I G+    R  EA+++ ++
Sbjct: 334 VTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDL 393

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++ +G  P  +T    ++       + +G  +   M       + V   +L++ + + G 
Sbjct: 394 MISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453

Query: 286 IESALAVFKAIANKK----LGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           +E A  +F+ + +++    +  +  ++ GL  +G  ++ALE+F ++ +  M+     ++ 
Sbjct: 454 LEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI 513

Query: 342 VLNACSHKGLVDEGNKCF-DMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
           +++   +   VD+    F  + +   K+      Y  ++  LCR   L +A  +   M
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKL--DARAYNIMISELCRKDSLSKADILFRKM 569



 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 175/384 (45%), Gaps = 20/384 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           HKPTL++ N +++    N + +DA++L  +M+     P+  T   V+    +        
Sbjct: 189 HKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAM 248

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKM----VDRDVVSWNSLIDGY 117
           ++   + +     D    S +++   K G +  A  +F++M       D++++N+LI G+
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SS 169
              G  +   KL  +M  R    +  T++ L+D   K GK+  A ++  +M ++    ++
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNT 368

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEV 225
           +++N++I+G+ K  ++  A Q+   M  +    +++++N +I+GY    R  + +ELF  
Sbjct: 369 ITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFRE 428

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           +   G++ + VT  + +        L   + +   MV      D V    L++     G 
Sbjct: 429 MSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGE 488

Query: 286 IESALAVFKAIANKKL----GHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIG 341
           +E AL +F  I   K+    G +  II G+      D A +LF  +   G+K  A  +  
Sbjct: 489 LEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNI 548

Query: 342 VLNACSHKGLVDEGNKCFDMMINE 365
           +++    K  + + +  F  M  E
Sbjct: 549 MISELCRKDSLSKADILFRKMTEE 572



 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 129/251 (51%), Gaps = 18/251 (7%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +V+++++I  +V   +  +A  L ++M+   + P+  T   +I G  + + ++E  Q+
Sbjct: 331 PNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQM 390

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDV----VSWNSLIDGYAR 119
              ++  G   D    + L+N Y K   +    ++F +M  R V    V++N+L+ G+ +
Sbjct: 391 VDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQ 450

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWN-- 173
           +G +EVA KLF EM SR    D  ++  LLDGL   G++E A E+F ++ +KS +  +  
Sbjct: 451 SGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKI-EKSKMELDIG 509

Query: 174 ---AMINGYMKSGKINLARQLFGQMPGRNLI----SWNSMISGYQLNGRFLEAMELFEVL 226
               +I+G   + K++ A  LF  +P + +     ++N MIS         +A  LF  +
Sbjct: 510 IYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKM 569

Query: 227 LKEGLMPSHVT 237
            +EG  P  +T
Sbjct: 570 TEEGHAPDELT 580


>AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5461031-5462545 FORWARD
           LENGTH=504
          Length = 504

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 165/354 (46%), Gaps = 20/354 (5%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           H+P++V++  +++ +    R  DAL +F QM+     P+      +I G  +   V    
Sbjct: 147 HEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNAL 206

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGY 117
            +   + K G G D    +SL++     G    A ++   M  R    DV ++N+LID  
Sbjct: 207 DLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDAC 266

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS---- 169
            + G V  A + ++EM  R    D  T++ L+ GL    +++ A E+F  M  K      
Sbjct: 267 VKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDV 326

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMPG----RNLISWNSMISGYQLNGRFLEAMELFEV 225
           V+++ +INGY KS K+    +LF +M      RN +++  +I GY   G+   A E+F  
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++  G+ P+ +T    L  +     +     I + M K+  D D V    +I    K G 
Sbjct: 387 MVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGE 446

Query: 286 IESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPH 335
           +  A  ++ ++  + L      +T +++GL   GL  +A  LF +M+  G+ P+
Sbjct: 447 VADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 183/398 (45%), Gaps = 25/398 (6%)

Query: 23  NDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSL 82
           +D+L LF  M+    LP       ++   S++        +   +  +G   +    + L
Sbjct: 63  DDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNIL 122

Query: 83  VNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLIDGYARNGNVEVAMKLFDEMPSR-- 136
           +N + +  ++ LA     KM+    +  +V++ SL++G+ R   V  A+ +FD+M     
Sbjct: 123 LNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGY 182

Query: 137 --DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSGKINLARQ 190
             +   +  ++DGL K  +V+ A ++ ++M K       V++N++I+G   SG+ + A +
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATR 242

Query: 191 LFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVS 246
           +   M  R    ++ ++N++I      GR  EA E +E +++  L P  VT    +  + 
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLC 302

Query: 247 GLAVLGNGRWIHSFMV-KHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLGH-- 303
             + L     +  FMV K CF  D V  + LI  Y K   +E  + +F  ++ + +    
Sbjct: 303 MYSRLDEAEEMFGFMVSKGCFP-DVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361

Query: 304 --WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCF-D 360
             +T +I G    G  + A E+F  M   G+ P+ IT+  +L+     G +++      D
Sbjct: 362 VTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILAD 421

Query: 361 MMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
           M  N   +   +  Y  ++  +C+AG +  A +I  S+
Sbjct: 422 MQKN--GMDADIVTYNIIIRGMCKAGEVADAWDIYCSL 457



 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 153/339 (45%), Gaps = 30/339 (8%)

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMP----SRDAFTWTALLDGLAKCGKVEAAREVFD 162
           +  ++ L+   ++    +V + L+++M       +  T   LL+   +C ++  A     
Sbjct: 81  IADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLG 140

Query: 163 QMPK----KSSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNG 214
           +M K     S V++ +++NG+ +  ++  A  +F QM G     N++ +N++I G   + 
Sbjct: 141 KMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSK 200

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRW-----IHSFMVKHCFDLD 269
           +   A++L   + K+G+ P  VT  S +S +       +GRW     + S M K     D
Sbjct: 201 QVDNALDLLNRMEKDGIGPDVVTYNSLISGLCS-----SGRWSDATRMVSCMTKREIYPD 255

Query: 270 GVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFM 325
                +LI+   K G +  A   ++ +  + L      ++ +I GL M+   D+A E+F 
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315

Query: 326 EMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
            M   G  P  +T+  ++N       V+ G K F  M ++  +V     Y  L+   CRA
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEM-SQRGVVRNTVTYTILIQGYCRA 374

Query: 386 GHLQQAKNIIESMP---MRPNKVIWMSLLSSSRNHGNLE 421
           G L  A+ I   M    + PN + +  LL    ++G +E
Sbjct: 375 GKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIE 413


>AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8128086-8130242 REVERSE
           LENGTH=718
          Length = 718

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 210/490 (42%), Gaps = 22/490 (4%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P++ + N+++     +   N A  ++  M+ H ++P   T   ++  C +   ++   +I
Sbjct: 201 PSVRNCNIVLKVLRDSRMMNKASAVYETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKI 260

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRDVV----SWNSLIDGYAR 119
              + +    F +   + L+N ++K G+M  AR+    M          S+N LI+GY +
Sbjct: 261 WLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCK 320

Query: 120 NGNVEVAMKLFDEMPSRDAF----TWTALLDGLAKCGKVEAAREVFDQMPKKSSVSWNAM 175
            G  + A  + DEM +   +    T+   +  L   G+++ ARE+   M     VS+N +
Sbjct: 321 QGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTL 380

Query: 176 INGYMKSGKINLARQLFGQMPG----RNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
           ++GY+K GK   A  LF  +       +++++N++I G   +G    A  L E +  + +
Sbjct: 381 MHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLI 440

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
            P  +T  + +        L     ++  M++     DG   T+      + G  + A  
Sbjct: 441 FPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFR 500

Query: 292 VFKAIANK-----KLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNAC 346
           + + +         L  +   I GL   G   +A+E   ++ R+G+ P  +T+  V+   
Sbjct: 501 LHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGY 560

Query: 347 SHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---MRPN 403
              G        +D M+ + ++ P+V  Y  L+    +AG L+QA      M    +RPN
Sbjct: 561 LENGQFKMARNLYDEMLRK-RLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPN 619

Query: 404 KVIWMSLLSSSRNHGNL-EIGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVRE 462
            +   +LL      GN+ E   Y      E  P     YT+L +      KW++V  + +
Sbjct: 620 VMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYK 679

Query: 463 MMKERGVLKD 472
            M ++ +  D
Sbjct: 680 EMLDKEIEPD 689



 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 121/254 (47%), Gaps = 17/254 (6%)

Query: 1   MHKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEG 60
           M  P +VS+N ++  Y+   +  +A LLF  +   D+ P   T   +I G      ++  
Sbjct: 369 MAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGA 428

Query: 61  KQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDG 116
           +++   +       D    ++LV  + K G + +A +V+D+M+ +    D  ++ +   G
Sbjct: 429 QRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVG 488

Query: 117 YARNGNVEVAMKLFDEMPSRDAFT-----WTALLDGLAKCGK----VEAAREVFDQMPKK 167
             R G+ + A +L +EM + D        +   +DGL K G     +E  R++F      
Sbjct: 489 ELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVP 548

Query: 168 SSVSWNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELF 223
             V++  +I GY+++G+  +AR L+ +M  + L    I++  +I G+   GR  +A +  
Sbjct: 549 DHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYS 608

Query: 224 EVLLKEGLMPSHVT 237
             + K G+ P+ +T
Sbjct: 609 TEMKKRGVRPNVMT 622


>AT1G47580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:17485668-17486387 FORWARD
           LENGTH=239
          Length = 239

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 1/108 (0%)

Query: 501 YAKLREMSKKLKLAGHVPDTSQVLXXXXXXXXXXXXXXXXXXRLAISFGLLNMERRTPIR 560
           Y KL+ + K+++ AG+VP+T  VL                  RLAI+FG++N    T IR
Sbjct: 133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSE-RLAIAFGIINTPPGTTIR 191

Query: 561 IMKNLRVCNDCHAVTKLLSAIYGREIIVRDNSRFHHFKNGTCSCNDFW 608
           +MKNLR+C DCH   K+LS+I  REIIVRDN RFHHF++G CSC D+W
Sbjct: 192 VMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGDYW 239


>AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23987202-23988740 REVERSE
           LENGTH=512
          Length = 512

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 204/426 (47%), Gaps = 43/426 (10%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLH-----HDLLPDGFTLPCVIKGCSRLHAVQ 58
           P++V +  +++    N R  + ++ F Q +      HDL      + C  + CSRL    
Sbjct: 69  PSIVDFTRLLTA-TANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCR-CSRLSF-- 124

Query: 59  EGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMV----DRDVVSWNSLI 114
               + G ++K+G+        SL++ +     +G A  +   MV    + +VV +N+LI
Sbjct: 125 -ALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLI 183

Query: 115 DGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGK-VEAAREVFDQMPKK-- 167
           DG  +NG + +A++L +EM  +    D  T+  LL GL   G+  +AAR + D M +   
Sbjct: 184 DGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSIN 243

Query: 168 -SSVSWNAMINGYMKSGKINLARQLFGQM----PGRNLISWNSMISGYQLNGRFLEAMEL 222
              V++ A+I+ ++K G ++ A++L+ +M       N +++NS+I+G  ++GR  +A + 
Sbjct: 244 PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKT 303

Query: 223 FEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSK 282
           F+++  +G  P+ VT  + +S      ++  G  +   M    F+ D     +LI  Y +
Sbjct: 304 FDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQ 363

Query: 283 CGSIESALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRR----IGMKP 334
            G +  AL +F  + ++++         ++ GL ++G  + AL  F +MR     IG+  
Sbjct: 364 VGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVA 423

Query: 335 HAITFIGVLNACSHKGLVDEGNKCFDMM--INEYKIVPTVEHYGCLVDILCRAGHLQQAK 392
           + I   G+  A       D+  K +++   +    + P    Y  ++  LC+ G  ++A 
Sbjct: 424 YNIMIHGLCKA-------DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREAD 476

Query: 393 NIIESM 398
            +I  M
Sbjct: 477 ELIRRM 482


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 194/448 (43%), Gaps = 63/448 (14%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + S+N++I       R  +A  L   M      PD  +   V+ G  R   + +  ++  
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNG 121
            + + G   + ++  S++ +  +  ++  A + F +M+ +    D V + +LIDG+ + G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 122 NVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
           ++  A K F EM SR    D  T+TA++ G  + G +  A ++F +M  K     SV++ 
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 174 AMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            +INGY K+G +  A ++   M       N++++ ++I G    G    A EL   + K 
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 230 GLMPSHVTILSALSAVSGLAVLGN----GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           GL P+   I +  S V+GL   GN     + +  F      + D V  T+L++ Y K G 
Sbjct: 486 GLQPN---IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG-LNADTVTYTTLMDAYCKSGE 541

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           +                               D+A E+  EM   G++P  +TF  ++N 
Sbjct: 542 M-------------------------------DKAQEILKEMLGKGLQPTIVTFNVLMNG 570

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV 405
               G++++G K  + M+ +  I P    +  LV   C   +L+ A  I + M  R    
Sbjct: 571 FCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR---- 625

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
               +    + + NL  G   A N+ EA
Sbjct: 626 ---GVGPDGKTYENLVKGHCKARNMKEA 650



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 195/424 (45%), Gaps = 50/424 (11%)

Query: 75  DKFVQ--SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDE 132
           D FVQ    LV  Y  WG      +VFD       V +  L+D     G +  A ++F++
Sbjct: 155 DSFVQFFDLLVYTYKDWGS---DPRVFD-------VFFQVLVDF----GLLREARRVFEK 200

Query: 133 MPSR----DAFTWTALLDGLAK-CGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSG 183
           M +        +    L  L+K C K   A  VF + P+     +  S+N +I+   + G
Sbjct: 201 MLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLG 260

Query: 184 KINLARQLF------GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
           +I  A  L       G  P  ++IS++++++GY   G   +  +L EV+ ++GL P+   
Sbjct: 261 RIKEAHHLLLLMELKGYTP--DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI 318

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
             S +  +  +  L       S M++     D V+ T+LI+ + K G I +A   F  + 
Sbjct: 319 YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH 378

Query: 298 NKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
           ++ +      +TAII G    G   +A +LF EM   G++P ++TF  ++N     G + 
Sbjct: 379 SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 438

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWMSL 410
           +  +  + MI +    P V  Y  L+D LC+ G L  A  ++  M    ++PN   + S+
Sbjct: 439 DAFRVHNHMI-QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 497

Query: 411 LSSSRNHGNLE-----IGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
           ++     GN+E     +GE+ A  L  AD   T  YT L + Y  +G+ DK   + + M 
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGL-NAD---TVTYTTLMDAYCKSGEMDKAQEILKEML 553

Query: 466 ERGV 469
            +G+
Sbjct: 554 GKGL 557



 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 188/419 (44%), Gaps = 55/419 (13%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           + P ++S++ +++ Y      +    L   M    L P+ +    +I    R+  + E +
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGY 117
           +    +++ G   D  V ++L++ + K G++  A K F +M  RD    V+++ ++I G+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 118 ARNGNVEVAMKLFDEM------PS-----------------RDAF--------------- 139
            + G++  A KLF EM      P                  +DAF               
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 140 -TWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMKSGKINLARQLFGQ 194
            T+T L+DGL K G +++A E+  +M K     +  ++N+++NG  KSG I  A +L G+
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 516

Query: 195 MPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV 250
                L    +++ +++  Y  +G   +A E+ + +L +GL P+ VT    ++      +
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576

Query: 251 LGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTA 306
           L +G  + ++M+      +     SL++ Y    ++++A A++K + ++ +G     +  
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE 365
           ++ G        +A  LF EM+  G      T+  ++     +    E  + FD M  E
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 121/244 (49%), Gaps = 16/244 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +V++  +I         + A  L  +M    L P+ FT   ++ G  +   ++E  ++
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G     G   D    ++L++ Y K GEM  A+++  +M+ +     +V++N L++G+  
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVS 171
           +G +E   KL + M ++    +A T+ +L+        ++AA  ++  M  +       +
Sbjct: 574 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +  ++ G+ K+  +  A  LF +M G+    ++ +++ +I G+    +FLEA E+F+ + 
Sbjct: 634 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 693

Query: 228 KEGL 231
           +EGL
Sbjct: 694 REGL 697


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 194/448 (43%), Gaps = 63/448 (14%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + S+N++I       R  +A  L   M      PD  +   V+ G  R   + +  ++  
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 66  YVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYARNG 121
            + + G   + ++  S++ +  +  ++  A + F +M+ +    D V + +LIDG+ + G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 122 NVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWN 173
           ++  A K F EM SR    D  T+TA++ G  + G +  A ++F +M  K     SV++ 
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 174 AMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEVLLKE 229
            +INGY K+G +  A ++   M       N++++ ++I G    G    A EL   + K 
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 230 GLMPSHVTILSALSAVSGLAVLGN----GRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           GL P+   I +  S V+GL   GN     + +  F      + D V  T+L++ Y K G 
Sbjct: 486 GLQPN---IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG-LNADTVTYTTLMDAYCKSGE 541

Query: 286 IESALAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNA 345
           +                               D+A E+  EM   G++P  +TF  ++N 
Sbjct: 542 M-------------------------------DKAQEILKEMLGKGLQPTIVTFNVLMNG 570

Query: 346 CSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMPMRPNKV 405
               G++++G K  + M+ +  I P    +  LV   C   +L+ A  I + M  R    
Sbjct: 571 FCLHGMLEDGEKLLNWMLAK-GIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSR---- 625

Query: 406 IWMSLLSSSRNHGNLEIGEYAAHNLIEA 433
               +    + + NL  G   A N+ EA
Sbjct: 626 ---GVGPDGKTYENLVKGHCKARNMKEA 650



 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 195/424 (45%), Gaps = 50/424 (11%)

Query: 75  DKFVQ--SSLVNMYAKWGEMGLARKVFDKMVDRDVVSWNSLIDGYARNGNVEVAMKLFDE 132
           D FVQ    LV  Y  WG      +VFD       V +  L+D     G +  A ++F++
Sbjct: 155 DSFVQFFDLLVYTYKDWGS---DPRVFD-------VFFQVLVDF----GLLREARRVFEK 200

Query: 133 MPSR----DAFTWTALLDGLAK-CGKVEAAREVFDQMPKK----SSVSWNAMINGYMKSG 183
           M +        +    L  L+K C K   A  VF + P+     +  S+N +I+   + G
Sbjct: 201 MLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLG 260

Query: 184 KINLARQLF------GQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVT 237
           +I  A  L       G  P  ++IS++++++GY   G   +  +L EV+ ++GL P+   
Sbjct: 261 RIKEAHHLLLLMELKGYTP--DVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYI 318

Query: 238 ILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA 297
             S +  +  +  L       S M++     D V+ T+LI+ + K G I +A   F  + 
Sbjct: 319 YGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMH 378

Query: 298 NKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVD 353
           ++ +      +TAII G    G   +A +LF EM   G++P ++TF  ++N     G + 
Sbjct: 379 SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMK 438

Query: 354 EGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM---PMRPNKVIWMSL 410
           +  +  + MI +    P V  Y  L+D LC+ G L  A  ++  M    ++PN   + S+
Sbjct: 439 DAFRVHNHMI-QAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 497

Query: 411 LSSSRNHGNLE-----IGEYAAHNLIEADPDATGCYTLLSNIYAAAGKWDKVSHVREMMK 465
           ++     GN+E     +GE+ A  L  AD   T  YT L + Y  +G+ DK   + + M 
Sbjct: 498 VNGLCKSGNIEEAVKLVGEFEAAGL-NAD---TVTYTTLMDAYCKSGEMDKAQEILKEML 553

Query: 466 ERGV 469
            +G+
Sbjct: 554 GKGL 557



 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 188/419 (44%), Gaps = 55/419 (13%)

Query: 2   HKPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGK 61
           + P ++S++ +++ Y      +    L   M    L P+ +    +I    R+  + E +
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336

Query: 62  QIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDRD----VVSWNSLIDGY 117
           +    +++ G   D  V ++L++ + K G++  A K F +M  RD    V+++ ++I G+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 118 ARNGNVEVAMKLFDEM------PS-----------------RDAF--------------- 139
            + G++  A KLF EM      P                  +DAF               
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNV 456

Query: 140 -TWTALLDGLAKCGKVEAAREVFDQMPK----KSSVSWNAMINGYMKSGKINLARQLFGQ 194
            T+T L+DGL K G +++A E+  +M K     +  ++N+++NG  KSG I  A +L G+
Sbjct: 457 VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGE 516

Query: 195 MPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAV 250
                L    +++ +++  Y  +G   +A E+ + +L +GL P+ VT    ++      +
Sbjct: 517 FEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576

Query: 251 LGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIANKKLG----HWTA 306
           L +G  + ++M+      +     SL++ Y    ++++A A++K + ++ +G     +  
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636

Query: 307 IIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINE 365
           ++ G        +A  LF EM+  G      T+  ++     +    E  + FD M  E
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRRE 695



 Score = 77.4 bits (189), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 121/244 (49%), Gaps = 16/244 (6%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P +V++  +I         + A  L  +M    L P+ FT   ++ G  +   ++E  ++
Sbjct: 454 PNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL 513

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
            G     G   D    ++L++ Y K GEM  A+++  +M+ +     +V++N L++G+  
Sbjct: 514 VGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCL 573

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVS 171
           +G +E   KL + M ++    +A T+ +L+        ++AA  ++  M  +       +
Sbjct: 574 HGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLL 227
           +  ++ G+ K+  +  A  LF +M G+    ++ +++ +I G+    +FLEA E+F+ + 
Sbjct: 634 YENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 693

Query: 228 KEGL 231
           +EGL
Sbjct: 694 REGL 697


>AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23793641 FORWARD LENGTH=666
          Length = 666

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/513 (22%), Positives = 231/513 (45%), Gaps = 56/513 (10%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + S+N++I C+   H+ + +L  F ++      PD  T   ++ G      + E   + G
Sbjct: 141 IYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFG 200

Query: 66  YVLKIGF-----GFDKFVQ----------SSLVNMYAKWGEMGLARKVFDKMVDR----D 106
           Y+++ GF      FD+ V+          ++L+N     G +  A  + +KMV +    D
Sbjct: 201 YMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFD 162
           VV++ ++++G  + G+ + A+ L  +M       D   ++A++D L K G    A+ +F 
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 320

Query: 163 QMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNG 214
           +M +K    +  ++N MI+G+   G+ + A++L   M  R    +++++N++IS     G
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL----DG 270
           +  EA +L + +L   + P  VT  S +          + R+  +   KH FDL    D 
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMI-----YGFCKHNRFDDA---KHMFDLMASPDV 432

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD-----QALELFM 325
           V   ++I++Y +   ++  + + + I+ + L   T     L +HG  +      A +LF 
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL-IHGFCEVDNLNAAQDLFQ 491

Query: 326 EMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
           EM   G+ P  IT   +L        ++E  + F+ +I   KI      Y  ++  +C+ 
Sbjct: 492 EMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIIIHGMCKG 550

Query: 386 GHLQQAKNIIESMPM---RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA--DPDATGC 440
             + +A ++  S+P+    P+   +  ++S       +       H + +   +PD +  
Sbjct: 551 SKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTY 610

Query: 441 YTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
            TL+      AG+ DK   +   M+  G   DA
Sbjct: 611 NTLIRGCL-KAGEIDKSIELISEMRSNGFSGDA 642



 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 186/411 (45%), Gaps = 17/411 (4%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P ++++N +I+      R  +A  L  +M+   L  D  T   ++ G  ++   +    +
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 283

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
              + +     D  + S++++   K G    A+ +F +M+++    +V ++N +IDG+  
Sbjct: 284 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 343

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVS 171
            G    A +L  +M  R    D  T+ AL+    K GK+  A ++ D+M  +     +V+
Sbjct: 344 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 403

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
           +N+MI G+ K  + + A+ +F  M   +++++N++I  Y    R  E M+L   + + GL
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           + +  T  + +     +  L   + +   M+ H    D +    L+  + +   +E AL 
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 292 VFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           +F+ I   K+      +  II G+      D+A +LF  +   G++P   T+  +++   
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
            K  + + N  F  M +     P    Y  L+    +AG + ++  +I  M
Sbjct: 584 GKSAISDANVLFHKMKDNGH-EPDNSTYNTLIRGCLKAGEIDKSIELISEM 633



 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 164/354 (46%), Gaps = 20/354 (5%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP +V ++ II     +   +DA  LF +ML   + P+ FT  C+I G        + ++
Sbjct: 293 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
           +   +++     D    ++L++   K G++  A K+ D+M+ R    D V++NS+I G+ 
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNA 174
           ++   + A  +FD M S D  T+  ++D   +  +V+   ++  ++ ++    ++ ++N 
Sbjct: 413 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 175 MINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +I+G+ +   +N A+ LF +M       + I+ N ++ G+  N +  EA+ELFEV+    
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           +    V     +  +   + +     +   +  H  + D      +I  +    +I  A 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592

Query: 291 AVFKAIANKKLGH------WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
            +F  + +   GH      +  +I G    G  D+++EL  EMR  G    A T
Sbjct: 593 VLFHKMKDN--GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644


>AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23795563 FORWARD LENGTH=806
          Length = 806

 Score =  113 bits (283), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/513 (22%), Positives = 228/513 (44%), Gaps = 56/513 (10%)

Query: 6   LVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQIHG 65
           + S+N++I C+   H+ + +L  F ++      PD  T   ++ G      + E   + G
Sbjct: 141 IYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFG 200

Query: 66  YVLKIGF-----GFDKFVQ----------SSLVNMYAKWGEMGLARKVFDKMVDR----D 106
           Y+++ GF      FD+ V+          ++L+N     G +  A  + +KMV +    D
Sbjct: 201 YMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHID 260

Query: 107 VVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFD 162
           VV++ ++++G  + G+ + A+ L  +M       D   ++A++D L K G    A+ +F 
Sbjct: 261 VVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFS 320

Query: 163 QMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNG 214
           +M +K    +  ++N MI+G+   G+ + A++L   M  R    +++++N++IS     G
Sbjct: 321 EMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEG 380

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDL----DG 270
           +  EA +L + +L   + P  VT  S +          +         KH FDL    D 
Sbjct: 381 KLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDA--------KHMFDLMASPDV 432

Query: 271 VLGTSLIEMYSKCGSIESALAVFKAIANKKLGHWTAIIVGLGMHGLAD-----QALELFM 325
           V   ++I++Y +   ++  + + + I+ + L   T     L +HG  +      A +LF 
Sbjct: 433 VTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTL-IHGFCEVDNLNAAQDLFQ 491

Query: 326 EMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRA 385
           EM   G+ P  IT   +L        ++E  + F+ +I   KI      Y  ++  +C+ 
Sbjct: 492 EMISHGVCPDTITCNILLYGFCENEKLEEALELFE-VIQMSKIDLDTVAYNIIIHGMCKG 550

Query: 386 GHLQQAKNIIESMPM---RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA--DPDATGC 440
             + +A ++  S+P+    P+   +  ++S       +       H + +   +PD +  
Sbjct: 551 SKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTY 610

Query: 441 YTLLSNIYAAAGKWDKVSHVREMMKERGVLKDA 473
            TL+      AG+ DK   +   M+  G   DA
Sbjct: 611 NTLIRGC-LKAGEIDKSIELISEMRSNGFSGDA 642



 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 186/411 (45%), Gaps = 17/411 (4%)

Query: 4   PTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQI 63
           P ++++N +I+      R  +A  L  +M+   L  D  T   ++ G  ++   +    +
Sbjct: 224 PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 283

Query: 64  HGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYAR 119
              + +     D  + S++++   K G    A+ +F +M+++    +V ++N +IDG+  
Sbjct: 284 LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 343

Query: 120 NGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVS 171
            G    A +L  +M  R    D  T+ AL+    K GK+  A ++ D+M  +     +V+
Sbjct: 344 FGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVT 403

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNLISWNSMISGYQLNGRFLEAMELFEVLLKEGL 231
           +N+MI G+ K  + + A+ +F  M   +++++N++I  Y    R  E M+L   + + GL
Sbjct: 404 YNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 232 MPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESALA 291
           + +  T  + +     +  L   + +   M+ H    D +    L+  + +   +E AL 
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 292 VFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVLNACS 347
           +F+ I   K+      +  II G+      D+A +LF  +   G++P   T+  +++   
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFC 583

Query: 348 HKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESM 398
            K  + + N  F  M +     P    Y  L+    +AG + ++  +I  M
Sbjct: 584 GKSAISDANVLFHKMKDNGH-EPDNSTYNTLIRGCLKAGEIDKSIELISEM 633



 Score =  103 bits (257), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 164/354 (46%), Gaps = 20/354 (5%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           KP +V ++ II     +   +DA  LF +ML   + P+ FT  C+I G        + ++
Sbjct: 293 KPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352

Query: 63  IHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKVFDKMVDR----DVVSWNSLIDGYA 118
           +   +++     D    ++L++   K G++  A K+ D+M+ R    D V++NS+I G+ 
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412

Query: 119 RNGNVEVAMKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFDQMPKK----SSVSWNA 174
           ++   + A  +FD M S D  T+  ++D   +  +V+   ++  ++ ++    ++ ++N 
Sbjct: 413 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 175 MINGYMKSGKINLARQLFGQMPGR----NLISWNSMISGYQLNGRFLEAMELFEVLLKEG 230
           +I+G+ +   +N A+ LF +M       + I+ N ++ G+  N +  EA+ELFEV+    
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 231 LMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIESAL 290
           +    V     +  +   + +     +   +  H  + D      +I  +    +I  A 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDAN 592

Query: 291 AVFKAIANKKLGH------WTAIIVGLGMHGLADQALELFMEMRRIGMKPHAIT 338
            +F  + +   GH      +  +I G    G  D+++EL  EMR  G    A T
Sbjct: 593 VLFHKMKDN--GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644


>AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:1303884-1305692 REVERSE
           LENGTH=602
          Length = 602

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 190/401 (47%), Gaps = 34/401 (8%)

Query: 39  PDGFTLPCVIKGCSRLHAVQEGKQIHGYVLKIGFGFDKFVQSSLVNMYAKWGEMGLARKV 98
           PD F    +I G  +++ + +  ++   +    F  D    + ++      G++ LA KV
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 99  FDKMVDRD----VVSWNSLIDGYARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAK 150
            ++++  +    V+++  LI+     G V+ A+KL DEM SR    D FT+  ++ G+ K
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 151 CGKVEAAREVFDQMPKKSS----VSWNAMINGYMKSGK----INLARQLFGQMPGRNLIS 202
            G V+ A E+   +  K      +S+N ++   +  GK      L  ++F +    N+++
Sbjct: 276 EGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 203 WNSMISGYQLNGRFLEAMELFEVLLKEGLMP---SHVTILSALSAVSGLAVLGNGRWIHS 259
           ++ +I+    +G+  EAM L +++ ++GL P   S+  +++A      L V     ++ +
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAI--EFLET 393

Query: 260 FMVKHCFDLDGVLGTSLIEMYSKCGSIESALAVFKAIA----NKKLGHWTAIIVGLGMHG 315
            +   C   D V   +++    K G  + AL +F  +     +     +  +   L   G
Sbjct: 394 MISDGCLP-DIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSG 452

Query: 316 LADQALELFMEMRRIGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMIN--EYKIVPTVE 373
              +AL + +EM   G+ P  IT+  +++    +G+VDE    F+++++    +  P+V 
Sbjct: 453 DKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEA---FELLVDMRSCEFHPSVV 509

Query: 374 HYGCLVDILCRAGHLQQAKNIIESMP---MRPNKVIWMSLL 411
            Y  ++   C+A  ++ A N++ESM     RPN+  +  L+
Sbjct: 510 TYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550



 Score = 91.7 bits (226), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 160/349 (45%), Gaps = 22/349 (6%)

Query: 3   KPTLVSWNLIISCYVHNHRSNDALLLFRQMLHHDLLPDGFTLPCVIKGCSRLHAVQEGKQ 62
           +PT++++ ++I   +     ++AL L  +ML   L PD FT   +I+G  +   V    +
Sbjct: 225 QPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFE 284

Query: 63  IHGYVLKIGFGFD----KFVQSSLVNMYAKWGE-MGLARKVFDKMVDRDVVSWNSLIDGY 117
           +   +   G   D      +  +L+N   KW E   L  K+F +  D +VV+++ LI   
Sbjct: 285 MVRNLELKGCEPDVISYNILLRALLNQ-GKWEEGEKLMTKMFSEKCDPNVVTYSILITTL 343

Query: 118 ARNGNVEVAMKLFDEMPSR----DAFTWTALLDGLAKCGKVEAAREVFDQMPKKSS---- 169
            R+G +E AM L   M  +    DA+++  L+    + G+++ A E  + M         
Sbjct: 344 CRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDI 403

Query: 170 VSWNAMINGYMKSGKINLARQLFGQMP----GRNLISWNSMISGYQLNGRFLEAMELFEV 225
           V++N ++    K+GK + A ++FG++       N  S+N+M S    +G  + A+ +   
Sbjct: 404 VNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILE 463

Query: 226 LLKEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGS 285
           ++  G+ P  +T  S +S +    ++     +   M    F    V    ++  + K   
Sbjct: 464 MMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHR 523

Query: 286 IESALAVFKAIANK----KLGHWTAIIVGLGMHGLADQALELFMEMRRI 330
           IE A+ V +++           +T +I G+G  G   +A+EL  ++ RI
Sbjct: 524 IEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRI 572



 Score = 86.7 bits (213), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 162/364 (44%), Gaps = 29/364 (7%)

Query: 106 DVVSWNSLIDGYARNGNVEVA---MKLFDEMPSRDAFTWTALLDGLAKCGKVEAAREVFD 162
           DV+    LI G+    N+  A   M++ ++    D F + AL++G  K  +++ A  V D
Sbjct: 123 DVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFAYNALINGFCKMNRIDDATRVLD 182

Query: 163 QMPKK----SSVSWNAMINGYMKSGKINLARQLFGQMPGRN----LISWNSMISGYQLNG 214
           +M  K     +V++N MI      GK++LA ++  Q+   N    +I++  +I    L G
Sbjct: 183 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242

Query: 215 RFLEAMELFEVLLKEGLMPSHVTILSALSAVSGLAVLGNG-RWIHSFMVKHCFDLDGVLG 273
              EA++L + +L  GL P   T  + +  +    ++      + +  +K C + D +  
Sbjct: 243 GVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGC-EPDVISY 301

Query: 274 TSLIEMYSKCGSIESA----LAVFKAIANKKLGHWTAIIVGLGMHGLADQALELFMEMRR 329
             L+      G  E        +F    +  +  ++ +I  L   G  ++A+ L   M+ 
Sbjct: 302 NILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE 361

Query: 330 IGMKPHAITFIGVLNACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQ 389
            G+ P A ++  ++ A   +G +D   +  + MI++   +P + +Y  ++  LC+ G   
Sbjct: 362 KGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKAD 420

Query: 390 QAKNI---IESMPMRPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEA-----DPDATGCY 441
           QA  I   +  +   PN   + ++ S+  + G+      A H ++E      DPD     
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD---KIRALHMILEMMSNGIDPDEITYN 477

Query: 442 TLLS 445
           +++S
Sbjct: 478 SMIS 481



 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 158/378 (41%), Gaps = 63/378 (16%)

Query: 119 RNGNVEVAMKLFDEMPSR----DAFTWTALLDG---LAKCGKVEAAREVFDQMPKKSSVS 171
           R+GN   ++ L + M  +    D    T L+ G   L    K     E+ ++  +    +
Sbjct: 101 RSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDVFA 160

Query: 172 WNAMINGYMKSGKINLARQLFGQMPGRNL----ISWNSMISGYQLNGRFLEAMELFEVLL 227
           +NA+ING+ K  +I+ A ++  +M  ++     +++N MI      G+   A+++   LL
Sbjct: 161 YNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLL 220

Query: 228 KEGLMPSHVTILSALSAVSGLAVLGNGRWIHSFMVKHCFDLDGVLGTSLIEMYSKCGSIE 287
            +   P+ +T                                    T LIE     G ++
Sbjct: 221 SDNCQPTVITY-----------------------------------TILIEATMLEGGVD 245

Query: 288 SALAVFKAIANKKLG----HWTAIIVGLGMHGLADQALELFMEMRRIGMKPHAITFIGVL 343
            AL +   + ++ L      +  II G+   G+ D+A E+   +   G +P  I++  +L
Sbjct: 246 EALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305

Query: 344 NACSHKGLVDEGNKCFDMMINEYKIVPTVEHYGCLVDILCRAGHLQQAKNIIESMP---M 400
            A  ++G  +EG K    M +E K  P V  Y  L+  LCR G +++A N+++ M    +
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSE-KCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGL 364

Query: 401 RPNKVIWMSLLSSSRNHGNLEIGEYAAHNLIEAD--PDATGCYTLLSNIYAAAGKWDKVS 458
            P+   +  L+++    G L++       +I     PD     T+L+ +    GK D+  
Sbjct: 365 TPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATL-CKNGKADQAL 423

Query: 459 HVREMMKERGVLKDAGCS 476
            +       G L + GCS
Sbjct: 424 EI------FGKLGEVGCS 435