Miyakogusa Predicted Gene
- Lj2g3v3337560.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3337560.1 Non Chatacterized Hit- tr|I3T0E0|I3T0E0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,Chlorophyll
a-b binding protein,Chlorophyll a/b binding protein domain; SUBFAMILY
NOT NAMED,NULL; CH,CUFF.40111.1
(264 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light har... 453 e-128
AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light har... 448 e-126
AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II ... 444 e-125
AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light ha... 381 e-106
AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyl... 380 e-106
AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll A/B-bi... 379 e-106
AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B bi... 379 e-106
AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting chloro... 377 e-105
AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting chlorop... 336 1e-92
AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein... 182 2e-46
AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of photo... 169 1e-42
AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting co... 118 4e-27
AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting co... 118 4e-27
AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting co... 118 4e-27
AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting co... 118 4e-27
AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting co... 114 7e-26
AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting co... 114 7e-26
AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harv... 108 4e-24
AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting co... 106 1e-23
AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting chlorophyl... 97 2e-20
AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex photos... 92 3e-19
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photos... 92 4e-19
AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting co... 91 8e-19
AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting co... 87 1e-17
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photos... 77 1e-14
AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex ph... 74 1e-13
AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein... 65 7e-11
AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting co... 61 9e-10
>AT2G05100.1 | Symbols: LHCB2.1, LHCB2 | photosystem II light
harvesting complex gene 2.1 | chr2:1823449-1824331
REVERSE LENGTH=265
Length = 265
Score = 453 bits (1166), Expect = e-128, Method: Compositional matrix adjust.
Identities = 220/264 (83%), Positives = 233/264 (88%)
Query: 1 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQS+F GQTALK NELLRK G G GR TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 120
FSE PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEIL +
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXX 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG IEGYR+
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 XXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
AFDPL LA+DP+AF+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHVADPVANNAWAFATNFVPG 264
NL+DH+ADPVANNAW++ATNFVPG
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPG 264
>AT2G05070.1 | Symbols: LHCB2.2, LHCB2 | photosystem II light
harvesting complex gene 2.2 | chr2:1799436-1800329
REVERSE LENGTH=265
Length = 265
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 216/264 (81%), Positives = 233/264 (88%)
Query: 1 MATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
MATSAIQQS+F GQTALK ++L++K G G GR TMRRTVKS PQSIWYGPDRPKYLGP
Sbjct: 1 MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60
Query: 61 FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER 120
FSE PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEIL +
Sbjct: 61 FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXX 180
NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG IEGYR+
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180
Query: 181 XXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQ 240
AFDPL LA+DP+AF+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI+
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Query: 241 NLYDHVADPVANNAWAFATNFVPG 264
NL+DH+ADPVANNAW++ATNFVPG
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPG 264
>AT3G27690.1 | Symbols: LHCB2.4, LHCB2.3, LHCB2 | photosystem II
light harvesting complex gene 2.3 |
chr3:10256002-10256921 FORWARD LENGTH=266
Length = 266
Score = 444 bits (1142), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/265 (81%), Positives = 230/265 (86%), Gaps = 1/265 (0%)
Query: 1 MATSAIQQSAFTGQTALKQGNELLRKAGGF-GKGRFTMRRTVKSAPQSIWYGPDRPKYLG 59
MATSAIQ S+F GQT LK N+LLRK G G GR MRRTVKS PQSIWYGPDRPKYLG
Sbjct: 1 MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLG 60
Query: 60 PFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILE 119
PFSE PSYLTGE+PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEIL
Sbjct: 61 PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120
Query: 120 RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXX 179
+NGVKFGEAVWFKAG+QIFSEGGLDYLGNPNLIHAQSILAIWA QVVLMG IEGYR+
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180
Query: 180 XXXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
AFDPL LA+DP+AF+ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240
Query: 240 QNLYDHVADPVANNAWAFATNFVPG 264
+NL+DH+ADPVANNAWA+ATNFVPG
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPG 265
>AT2G34420.1 | Symbols: LHB1B2, LHCB1.5 | photosystem II light
harvesting complex gene B1B2 | chr2:14522716-14523513
REVERSE LENGTH=265
Length = 265
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/267 (71%), Positives = 213/267 (79%), Gaps = 10/267 (3%)
Query: 2 ATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTV---KSAPQSIWYGPDRPKYL 58
+T A+ AF G+ +++L G GR TMR+TV K S WYG DR KYL
Sbjct: 4 STMALSSPAFAGKAVKPAASDVL------GSGRVTMRKTVAKPKGPSGSPWYGSDRVKYL 57
Query: 59 GPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEIL 118
GPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L
Sbjct: 58 GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELL 117
Query: 119 ERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXX 178
RNGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWATQV+LMG +EGYRV
Sbjct: 118 ARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAG 177
Query: 179 XX-XXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
+FDPLGLA DP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 178 DGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 238 PIQNLYDHVADPVANNAWAFATNFVPG 264
P++NL DH+ADPV NNAWAFATNFVPG
Sbjct: 238 PLENLADHLADPVNNNAWAFATNFVPG 264
>AT1G29930.1 | Symbols: CAB1, AB140, CAB140, LHCB1.3 | chlorophyll
A/B binding protein 1 | chr1:10478071-10478874 FORWARD
LENGTH=267
Length = 267
Score = 380 bits (976), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/270 (72%), Positives = 216/270 (80%), Gaps = 14/270 (5%)
Query: 2 ATSAIQQSAFTGQTALK---QGNELLRKAGGFGKGRFTMRRTV---KSAPQSIWYGPDRP 55
+T A+ AF G+ A+K +E+L G GR TMR+TV K S WYG DR
Sbjct: 4 STMALSSPAFAGK-AVKLSPAASEVL------GSGRVTMRKTVAKPKGPSGSPWYGSDRV 56
Query: 56 KYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 115
KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FP
Sbjct: 57 KYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 116
Query: 116 EILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYR 175
E+L RNGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWATQV+LMG +EGYR
Sbjct: 117 ELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR 176
Query: 176 VXXXX-XXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVT 234
V +FDPLGLA DP+AFAELKVKELKNGRLAMFSMFGFFVQAIVT
Sbjct: 177 VAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVT 236
Query: 235 GKGPIQNLYDHVADPVANNAWAFATNFVPG 264
GKGPI+NL DH+ADPV NNAWAFATNFVPG
Sbjct: 237 GKGPIENLADHLADPVNNNAWAFATNFVPG 266
>AT1G29920.1 | Symbols: CAB2, AB165, LHCB1.1 | chlorophyll
A/B-binding protein 2 | chr1:10475089-10475892 REVERSE
LENGTH=267
Length = 267
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/269 (72%), Positives = 213/269 (79%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFTGQTA--LKQGNELLRKAGGFGKGRFTMRRTV---KSAPQSIWYGPDRPK 56
+T A+ AF G+ +E+L G GR TMR+TV K S WYG DR K
Sbjct: 4 STMALSSPAFAGKAVNLSPAASEVL------GSGRVTMRKTVAKPKGPSGSPWYGSDRVK 57
Query: 57 YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE
Sbjct: 58 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 117
Query: 117 ILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRV 176
+L RNGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWATQV+LMG +EGYRV
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177
Query: 177 XXXX-XXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
+FDPLGLA DP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTG
Sbjct: 178 AGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 236 KGPIQNLYDHVADPVANNAWAFATNFVPG 264
KGPI+NL DH+ADPV NNAWAFATNFVPG
Sbjct: 238 KGPIENLADHLADPVNNNAWAFATNFVPG 266
>AT1G29910.1 | Symbols: CAB3, AB180, LHCB1.2 | chlorophyll A/B
binding protein 3 | chr1:10472443-10473246 REVERSE
LENGTH=267
Length = 267
Score = 379 bits (974), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/269 (72%), Positives = 213/269 (79%), Gaps = 12/269 (4%)
Query: 2 ATSAIQQSAFTGQTA--LKQGNELLRKAGGFGKGRFTMRRTV---KSAPQSIWYGPDRPK 56
+T A+ AF G+ +E+L G GR TMR+TV K S WYG DR K
Sbjct: 4 STMALSSPAFAGKAVNLSPAASEVL------GSGRVTMRKTVAKPKGPSGSPWYGSDRVK 57
Query: 57 YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPE 116
YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE
Sbjct: 58 YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 117
Query: 117 ILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRV 176
+L RNGVKFGEAVWFKAG+QIFS+GGLDYLGNP+L+HAQSILAIWATQV+LMG +EGYRV
Sbjct: 118 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 177
Query: 177 XXXX-XXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 235
+FDPLGLA DP+AFAELKVKELKNGRLAMFSMFGFFVQAIVTG
Sbjct: 178 AGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 237
Query: 236 KGPIQNLYDHVADPVANNAWAFATNFVPG 264
KGPI+NL DH+ADPV NNAWAFATNFVPG
Sbjct: 238 KGPIENLADHLADPVNNNAWAFATNFVPG 266
>AT2G34430.1 | Symbols: LHB1B1, LHCB1.4 | light-harvesting
chlorophyll-protein complex II subunit B1 |
chr2:14524818-14525618 FORWARD LENGTH=266
Length = 266
Score = 377 bits (967), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/238 (78%), Positives = 202/238 (84%), Gaps = 3/238 (1%)
Query: 30 FGKGRFTMRRTVK-SAPQ-SIWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSAD 87
FG GR TMR+ K + P S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 28 FGTGRITMRKASKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
Query: 88 PETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLG 147
PETFA+NRELEVIHSRWAMLGALGC FPE+L RNGVKFGEAVWFKAG+QIFS+GGLDYLG
Sbjct: 88 PETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLG 147
Query: 148 NPNLIHAQSILAIWATQVVLMGLIEGYRVXXXX-XXXXXXXXXXXXAFDPLGLADDPDAF 206
NP+L+HAQSILAIWATQV+LMG +EGYRV +FDPLGLA DP+AF
Sbjct: 148 NPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAF 207
Query: 207 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPG 264
AELKVKELKNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWAFATNFVPG
Sbjct: 208 AELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 265
>AT5G54270.1 | Symbols: LHCB3, LHCB3*1 | light-harvesting
chlorophyll B-binding protein 3 | chr5:22038424-22039383
FORWARD LENGTH=265
Length = 265
Score = 336 bits (861), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 172/265 (64%), Positives = 194/265 (73%), Gaps = 10/265 (3%)
Query: 2 ATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPF 61
++S + + F GQT N L R G ++TM +WYGPDR KYLGPF
Sbjct: 8 SSSVLTPTTFLGQTKASSFNPL-RDVVSLGSPKYTMG-------NDLWYGPDRVKYLGPF 59
Query: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILER- 120
S Q PSYLTGEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGA GC PE+L++
Sbjct: 60 SVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 121 NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXX 180
V F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+ QV+LMGL+EG+R+
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRINGLD 179
Query: 181 XXXXXXXXX-XXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
FDPLGLADDP FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 180 GVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 240 QNLYDHVADPVANNAWAFATNFVPG 264
+NL DH+ +PVANNAWAFAT F PG
Sbjct: 240 ENLLDHLDNPVANNAWAFATKFAPG 264
>AT1G76570.1 | Symbols: | Chlorophyll A-B binding family protein |
chr1:28729132-28730754 FORWARD LENGTH=327
Length = 327
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/266 (41%), Positives = 142/266 (53%), Gaps = 13/266 (4%)
Query: 2 ATSAIQQSAFTGQTALKQGNELLRKAGGFGKGRFTMRRTVKSAPQSIWYGPDRPKYLGPF 61
A AI S+ +L++ E +K RF + ++ S WYG +RP++ GP
Sbjct: 62 AVKAIANSSIG--VSLRRRLEEKKKEAVENSSRFK-SKAQEARNDSKWYGKERPRWFGPI 118
Query: 62 SEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERN 121
P YLTGE PGDYG+D AGL D TF K E++H+RWAML ALG PE+ +
Sbjct: 119 PYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLT 178
Query: 122 GV-KFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA--QSILAIWATQVVLMGLIEGYRVXX 178
G F E VW++ G L+YLG P L A Q ++ I QV+LM E R
Sbjct: 179 GTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAICQVLLMVGPEYARYCG 238
Query: 179 XXXXXXXXXXXX-------XXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQA 231
FDPL L++DP AF +LKVKE+KNGRLAM + GF+ QA
Sbjct: 239 IEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLAMVAWLGFYAQA 298
Query: 232 IVTGKGPIQNLYDHVADPVANNAWAF 257
TGKGP+QNL DHV+DP+ NN A
Sbjct: 299 AFTGKGPVQNLVDHVSDPLHNNLIAM 324
>AT4G10340.1 | Symbols: LHCB5 | light harvesting complex of
photosystem II 5 | chr4:6408200-6409496 FORWARD
LENGTH=280
Length = 280
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 124/209 (59%), Gaps = 9/209 (4%)
Query: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
WYGPDR +L +IP YL GE GDYG+D GL PE FAK + E+IH+RWA
Sbjct: 62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWA 121
Query: 106 MLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
MLGA G PE L + G G EAVWFK GA + L+Y G I+ + +
Sbjct: 122 MLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVV---AE 178
Query: 165 VVLMGLIEGYRVXXXXXXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
VVL+G E YR+ FDPLGLA DP+ A LKVKE+KNGRLAMF+M
Sbjct: 179 VVLLGGAEYYRITNGLDFEDKLHPGG--PFDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236
Query: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
GFF+QA VTG+GP++NL H++DP NN
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNN 265
>AT3G61470.1 | Symbols: LHCA2 | photosystem I light harvesting
complex gene 2 | chr3:22745736-22747032 FORWARD
LENGTH=257
Length = 257
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 99/205 (48%), Gaps = 16/205 (7%)
Query: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GLS+DP++ N + E++H RWAMLGA G
Sbjct: 50 PDRPIWFP--GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAG 107
Query: 112 CTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLI 171
PE L + G+ W+ AG Q + + L + IL WA +I
Sbjct: 108 IFIPEFLTKIGI-LNTPSWYTAGEQEY------FTDKTTLFVVELILIGWAEGRRWADII 160
Query: 172 EGYRVXXXXXXXXXXXXXXXXA------FDPLGLAD-DPDAFAELKVKELKNGRLAMFSM 224
+ V FDPLG P EL+ KE+KNGRLAM ++
Sbjct: 161 KPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAV 220
Query: 225 FGFFVQAIVTGKGPIQNLYDHVADP 249
G + Q I TG GPI NL+ H+ADP
Sbjct: 221 MGAWFQHIYTGTGPIDNLFAHLADP 245
>AT1G61520.3 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 112/228 (49%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP + S Q SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCTFPEILERNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA G PEIL + G+ E WF+ G I G Y + ++
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD--------NYTLFV 157
Query: 163 TQVVLMGLIEGYRVX-----------------XXXXXXXXXXXXXXXAFDPLGLADDPDA 205
++ LMG E R+ F+PLG D +
Sbjct: 158 LEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKS 217
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP QNL DH+ADPV NN
Sbjct: 218 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>AT1G61520.1 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700152-22701149 FORWARD
LENGTH=273
Length = 273
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 112/228 (49%), Gaps = 37/228 (16%)
Query: 51 GPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRW 104
G +RP + S Q SYL G PGDYG+D GLS DPE F + R L E+I+ R+
Sbjct: 50 GANRPLWFA--SSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRF 106
Query: 105 AMLGALGCTFPEILERNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWA 162
AMLGA G PEIL + G+ E WF+ G I G Y + ++
Sbjct: 107 AMLGAAGAIAPEILGKAGLIPAETALPWFQTGV-IPPAGTYTYWAD--------NYTLFV 157
Query: 163 TQVVLMGLIEGYRVX-----------------XXXXXXXXXXXXXXXAFDPLGLADDPDA 205
++ LMG E R+ F+PLG D +
Sbjct: 158 LEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKS 217
Query: 206 FAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
ELK+KE+KNGRLAM ++ G+F+Q +VTG GP QNL DH+ADPV NN
Sbjct: 218 LKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNN 265
>AT3G54890.1 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=241
Length = 241
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXXX 181
G W KA GG YLGNP + ++ I A + + + +E R
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 159
Query: 182 XXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIQ 240
AFDPLG + DP ELKVKE+KNGRLA+ + GF V Q+ G GP++
Sbjct: 160 KDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 219
Query: 241 NLYDHVADPVANN 253
NL H+ADP NN
Sbjct: 220 NLATHLADPWHNN 232
>AT1G45474.2 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKF 125
P YL G GDYG+D GL DPE+ + E++HSR+AMLG G F ++L G++
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLI-------EG--YRV 176
VW++AGA F D+ LI Q +L +A M + EG +
Sbjct: 115 NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFG 169
Query: 177 XXXXXXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
+PLGLA D + K+KE+KNGRLAM +M GFFVQA VT
Sbjct: 170 LEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 229
Query: 237 GPIQNLYDHVADP 249
GPI NL +H+++P
Sbjct: 230 GPIDNLVEHLSNP 242
>AT1G45474.1 | Symbols: LHCA5 | photosystem I light harvesting
complex gene 5 | chr1:17179353-17180439 FORWARD
LENGTH=256
Length = 256
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKF 125
P YL G GDYG+D GL DPE+ + E++HSR+AMLG G F ++L G++
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIR- 114
Query: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLI-------EG--YRV 176
VW++AGA F D+ LI Q +L +A M + EG +
Sbjct: 115 NLPVWYEAGAVKF-----DFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFG 169
Query: 177 XXXXXXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
+PLGLA D + K+KE+KNGRLAM +M GFFVQA VT
Sbjct: 170 LEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHT 229
Query: 237 GPIQNLYDHVADP 249
GPI NL +H+++P
Sbjct: 230 GPIDNLVEHLSNP 242
>AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light
harvesting complex gene 6 | chr1:6612806-6613799 FORWARD
LENGTH=270
Length = 270
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 102/217 (47%), Gaps = 18/217 (8%)
Query: 52 PDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111
PDRP + P +L G PGD+G+D GL +DP+T + E+IHSRWAML G
Sbjct: 63 PDRPLWFP--GSSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTG 120
Query: 112 CTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLI 171
PE LER G W+ AG++ + + + L AQ +L WA LI
Sbjct: 121 IIIPECLERLGF-IENFSWYDAGSREY------FADSTTLFVAQMVLMGWAEGRRWADLI 173
Query: 172 EGYRVXXXXXXXXXXXXXXXXAFDPLGLADD--------PDAFAELKVKELKNGRLAMFS 223
+ V + P GL D P+ L+ KE+KNGRLAM +
Sbjct: 174 KPGSVDIEPKYPHKVNPKPDVGY-PGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLA 232
Query: 224 MFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATN 260
GF QA T + PI+NL H+ADP N ++ T+
Sbjct: 233 FLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTS 269
>AT1G61520.2 | Symbols: LHCA3 | photosystem I light harvesting
complex gene 3 | chr1:22700493-22701149 FORWARD
LENGTH=218
Length = 218
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 101/208 (48%), Gaps = 35/208 (16%)
Query: 72 EFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCTFPEILERNGVKF 125
PGDYG+D GLS DPE F + R L E+I+ R+AMLGA G PEIL + G+
Sbjct: 14 SLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 126 GEAV--WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXXXXX 183
E WF+ G I G Y + ++ ++ LMG E R+
Sbjct: 73 AETALPWFQTGV-IPPAGTYTYWADN--------YTLFVLEMALMGFAEHRRLQDWYNPG 123
Query: 184 XXXXXXXXXA-----------------FDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 226
F+PLG D + ELK+KE+KNGRLAM ++ G
Sbjct: 124 SMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILG 183
Query: 227 FFVQAIVTGKGPIQNLYDHVADPVANNA 254
+F+Q +VTG GP QNL DH+ADPV NN
Sbjct: 184 YFIQGLVTGVGPYQNLLDHLADPVNNNV 211
>AT3G47470.1 | Symbols: LHCA4, CAB4 | light-harvesting
chlorophyll-protein complex I subunit A4 |
chr3:17493622-17494773 REVERSE LENGTH=251
Length = 251
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKF 125
P YLTG GD G+D GL+ DPE + E+++ RWAMLG G PE+ + G+
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-I 122
Query: 126 GEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXXXXXX 184
W+ AG Q F+ ++ L H I W + G + +
Sbjct: 123 NVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPK 180
Query: 185 XXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYD 244
F+PL A +A K KEL NGRLAM + GF VQ VTGKGP +NL
Sbjct: 181 GEVGYPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQ 236
Query: 245 HVADPVAN 252
H++DP N
Sbjct: 237 HLSDPWHN 244
>AT3G08940.2 | Symbols: LHCB4.2 | light harvesting complex
photosystem II | chr3:2717717-2718665 FORWARD LENGTH=287
Length = 287
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 110/264 (41%), Gaps = 62/264 (23%)
Query: 34 RFTMR---RTVKSAPQSI-WYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE 89
RFT R T K++P+ DRP + + P YL G GDYG+D GL E
Sbjct: 28 RFTARFGFGTKKASPKKAKTVISDRPLWFP--GAKSPEYLDGSLVGDYGFDPFGLGKPAE 85
Query: 90 -----------TFAKN--------------------------------RELEVIHSRWAM 106
AKN RE E+IH RWAM
Sbjct: 86 YLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAM 145
Query: 107 LGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVV 166
L LG E L GV W AG +G YLG P +++ I +V+
Sbjct: 146 LATLGAITVEWL--TGV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVL 194
Query: 167 LMGLIEGYRVXXXXXXXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFG 226
++G IE R FDPLGLA DP A+L++ E+K+ RLAM G
Sbjct: 195 VIGYIEFQR--NAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLG 252
Query: 227 FFVQAIVTGKGPIQNLYDHVADPV 250
F VQA TGKGP+ N H++DP+
Sbjct: 253 FAVQAAATGKGPLNNWATHLSDPL 276
>AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex
photosystem II | chr5:209084-210243 FORWARD LENGTH=290
Length = 290
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 103/242 (42%), Gaps = 60/242 (24%)
Query: 53 DRPK-YLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN------ 94
DRP Y G S P +L G GDYG+D GL E AKN
Sbjct: 54 DRPLWYPGAIS---PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVI 110
Query: 95 --------------------------RELEVIHSRWAMLGALGCTFPEILERNGVKFGEA 128
RE E+IH RWAML LG E L GV
Sbjct: 111 GTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWL--TGV----- 163
Query: 129 VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXXXXXXXXXX 188
W AG +G YLG P +++ I +V+++G IE R
Sbjct: 164 TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQR--NAELDSEKRLY 217
Query: 189 XXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVAD 248
FDPLGLA DP+ A+L++ E+K+ RLAM + GF VQA TGKGP+ N H++D
Sbjct: 218 PGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 277
Query: 249 PV 250
P+
Sbjct: 278 PL 279
>AT3G54890.2 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339706-20340922 REVERSE
LENGTH=207
Length = 207
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 86/193 (44%), Gaps = 48/193 (24%)
Query: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXXX 181
G W KA GG YLGNP W T ++
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP---------VPWGTLPTIL------------- 142
Query: 182 XXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIQ 240
A + L +A ELKVKE+KNGRLA+ + GF V Q+ G GP++
Sbjct: 143 -----------AIEFLAIA------FELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLE 185
Query: 241 NLYDHVADPVANN 253
NL H+ADP NN
Sbjct: 186 NLATHLADPWHNN 198
>AT3G54890.4 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339881-20340922 REVERSE
LENGTH=213
Length = 213
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWATQVVLMGLIEGYRVXXXXX 181
G W KA GG YLGNP + ++ I A + + + +E R
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR---SME 159
Query: 182 XXXXXXXXXXXAFDPLGLADDPDAFAELKVKELKNGR 218
AFDPLG + DP ELKVKE+KNG+
Sbjct: 160 KDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGK 196
>AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex
photosystem II | chr2:16745884-16747190 FORWARD
LENGTH=276
Length = 276
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 95 RELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHA 154
RE E+IH RWAMLG LG E L G+ W AG EG YLG P
Sbjct: 138 RECELIHGRWAMLGTLGAIAVEAL--TGI-----AWQDAGKVELVEGS-SYLGQPLPFSL 189
Query: 155 QSILAIWATQVVLMGLIEGYRVXXXXXXXXXXXXXXXXAFDPLGLADDPDAFAELKVKEL 214
++ IW +V+++G IE R FDPLGLA DP+ LK+ E+
Sbjct: 190 TTL--IW-IEVLVVGYIEFQR---NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEI 243
Query: 215 KNGRLAMFSMFGFFVQAIVTGKGPIQNL 242
K+ RLAM + F +QA TGKGP+ L
Sbjct: 244 KHSRLAMVAFLIFALQAAFTGKGPVSFL 271
>AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex
photosystem II subunit 6 | chr1:5446685-5447676 REVERSE
LENGTH=258
Length = 258
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/262 (29%), Positives = 102/262 (38%), Gaps = 58/262 (22%)
Query: 15 TALKQGNELLRKAGGFGKGRFTMRRTVKSA----PQSIWYGPDRPKYLGPFSEQIPSYLT 70
T K+G L G G R + + +A P+ W P G + P +L
Sbjct: 19 TGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWI----PAVKGGGNFLDPEWLD 74
Query: 71 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNGVKFGEAVW 130
G PGD+G+D GL DP RE E+IH RWAM LG G + W
Sbjct: 75 GSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGVAW 127
Query: 131 FKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGLIEGYR--------------- 175
F+AGAQ P+ I S ++ TQ++LMG +E R
Sbjct: 128 FEAGAQ------------PDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWA 175
Query: 176 ------VXXXXXXXXXXXXXXXXAFDPLGLAD-------DPD--AFAELKVKELKNGRLA 220
FDPLGLA +PD LK+ E+K+ RLA
Sbjct: 176 TPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLA 235
Query: 221 MFSMFGFFVQAIVTGKGPIQNL 242
M +M F+ +A GK P+ L
Sbjct: 236 MVAMLIFYFEA-GQGKTPLGAL 256
>AT5G28450.1 | Symbols: | Chlorophyll A-B binding family protein |
chr5:10372978-10374190 REVERSE LENGTH=173
Length = 173
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 194 FDPLGLAD-DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADP 249
FDPLG P EL+ KE+KNGRLAM ++ G + Q I TG GPI NL+ H+ADP
Sbjct: 105 FDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 161
>AT3G54890.3 | Symbols: LHCA1 | photosystem I light harvesting
complex gene 1 | chr3:20339961-20340922 REVERSE
LENGTH=164
Length = 164
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 63 EQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILERNG 122
E P+YL G PGD+G+D GL P + +E E+IH RWAML G PE L
Sbjct: 52 EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEAL---- 107
Query: 123 VKFGEAVWFKAGAQIFSEGG-LDYLGNP 149
G W KA GG YLGNP
Sbjct: 108 ---GYGNWVKAQEWAALPGGQATYLGNP 132