Miyakogusa Predicted Gene

Lj2g3v3337340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3337340.1 Non Chatacterized Hit- tr|C0PDX0|C0PDX0_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,43.4,8e-19,no
description,NULL; A Receptor for Ubiquitination Targets,F-box domain,
cyclin-like; SUBFAMILY NOT ,gene.g44622.t1.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48170.1 | Symbols: SLY2 | F-box family protein | chr5:195327...   119   8e-28
AT4G24210.1 | Symbols: SLY1 | F-box family protein | chr4:125636...    62   1e-10

>AT5G48170.1 | Symbols: SLY2 | F-box family protein |
           chr5:19532729-19533202 REVERSE LENGTH=157
          Length = 157

 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/143 (50%), Positives = 88/143 (61%), Gaps = 12/143 (8%)

Query: 15  FSINDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSPPPDSVR 74
           FSIND+ D+L E+L+RLDG SL  AACVCRLW ++A  +DS+WE LCFR VS  P  S+R
Sbjct: 26  FSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVAR-NDSIWEELCFRQVSPRPSLSLR 84

Query: 75  AVVVALGGYRRLYMVCVRPVLSRLGDSXXXXXXXXXXXXXQLSLSLFCVDSYERLXXXXX 134
           +VV ALGGYR LY +C+RPVL+RL                QLSLSL+CV  YERL     
Sbjct: 85  SVVSALGGYRCLYFLCIRPVLARLPK------LLWTRDQLQLSLSLYCVHYYERL----- 133

Query: 135 XXXXXXXXXXXXXLMFLCNPINV 157
                        L+FL  P+NV
Sbjct: 134 YVGAWLGDAPPSSLIFLRKPVNV 156


>AT4G24210.1 | Symbols: SLY1 | F-box family protein |
           chr4:12563658-12564113 FORWARD LENGTH=151
          Length = 151

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 65/114 (57%), Gaps = 9/114 (7%)

Query: 18  NDNIDILREVLKRLDGPSLGVAACVCRLWRSLASSDDSLWEHLCFRHVSSP--PPDSVRA 75
           N + +++ EVLK +D  +L +++CV ++W   A  D+ LWE +C RH ++     + +R+
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTA-QDERLWELICTRHWTNIGCGQNQLRS 92

Query: 76  VVVALGGYRRLYMVCVRPVLSRLGDSXXXXXXXXXXXXXQLSLSLFCVDSYERL 129
           VV+ALGG+RRL+ + + P+      S             +L+LSL  +  YE++
Sbjct: 93  VVLALGGFRRLHSLYLWPL------SKPNPRARFGKDELKLTLSLLSIRYYEKM 140