Miyakogusa Predicted Gene

Lj2g3v3336110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3336110.1 Non Chatacterized Hit- tr|G7J261|G7J261_MEDTR
Uncharacterized protein OS=Medicago truncatula
GN=MTR_,63.29,6e-17,seg,NULL,CUFF.40026.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51355.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    61   2e-10
AT3G20898.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    61   3e-10

>AT1G51355.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52
           proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
           - 2; Fungi - 0; Plants - 50; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:19041475-19041825 FORWARD LENGTH=116
          Length = 116

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 3/60 (5%)

Query: 65  VSTISVCCSTPKGQKFKIPEISTCPPAPKKPRVLSNRSLRRSPLAFFAPLDLEVFFSVAL 124
           VS  S CC TP  +K +IPE+ TCPPAPKK +V  N +LRR  +AFFAP D+E+FF  AL
Sbjct: 54  VSAESGCC-TP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFAL 110


>AT3G20898.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT1G51355.1);
           Has 66 Blast hits to 66 proteins in 10 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:7323796-7324203 FORWARD LENGTH=108
          Length = 108

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 39/58 (67%)

Query: 63  AEVSTISVCCSTPKGQKFKIPEISTCPPAPKKPRVLSNRSLRRSPLAFFAPLDLEVFF 120
           A V T    C TPK +K +IPE+ TCPPAPKK RV  N  LRR  + FFAP ++E+FF
Sbjct: 45  AAVLTSPGGCCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102