Miyakogusa Predicted Gene

Lj2g3v3319250.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3319250.1 Non Chatacterized Hit- tr|G7K4T5|G7K4T5_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,51.9,2e-18,
,gene.g44568.t1.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26490.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    77   2e-15
AT5G56050.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    76   4e-15

>AT4G26490.1 | Symbols:  | Late embryogenesis abundant (LEA)
           hydroxyproline-rich glycoprotein family |
           chr4:13380425-13381231 FORWARD LENGTH=268
          Length = 268

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 57/80 (71%)

Query: 13  WNWLISSKSIKPFSQRLGETRLQSVQFMSSLVFLPQDVGVKLQRQVQSNRINYNARGTFK 72
           +N LI+++ ++PF Q+  ETRL+ ++ +SSLV LP +  V+L+RQ+++N+I Y  RGTFK
Sbjct: 170 FNRLIAAQVVQPFLQKKHETRLEPIRLISSLVGLPVNHAVELRRQLENNKIEYEIRGTFK 229

Query: 73  ERFYMDLVHLSYWLHSICYL 92
            + +  ++H SY LH  C L
Sbjct: 230 VKAHFGMIHYSYQLHGRCQL 249


>AT5G56050.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           chloroplast; BEST Arabidopsis thaliana protein match is:
           Late embryogenesis abundant (LEA) hydroxyproline-rich
           glycoprotein family (TAIR:AT4G26490.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:22701167-22702018 REVERSE LENGTH=283
          Length = 283

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 53/76 (69%)

Query: 17  ISSKSIKPFSQRLGETRLQSVQFMSSLVFLPQDVGVKLQRQVQSNRINYNARGTFKERFY 76
           I+++ + PFSQR G+TRL+ ++ +S+LVFLP +  ++L+RQV SNRI Y  R  F+ +  
Sbjct: 188 IATQGVLPFSQRNGKTRLEPIRLISNLVFLPVNHILELRRQVTSNRIAYEIRSNFRVKAI 247

Query: 77  MDLVHLSYWLHSICYL 92
             ++H SY LH IC L
Sbjct: 248 FGMIHYSYMLHGICQL 263