Miyakogusa Predicted Gene

Lj2g3v3317710.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3317710.2 Non Chatacterized Hit- tr|I1QRT8|I1QRT8_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,84.38,0,G-patch,G-patch domain; glycine rich nucleic binding
domain,G-patch domain; G_PATCH,G-patch domain; ,CUFF.40035.2
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52120.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/sur...   270   3e-73
AT3G52120.2 | Symbols:  | SWAP (Suppressor-of-White-APricot)/sur...   156   5e-39
AT5G26610.3 | Symbols:  | D111/G-patch domain-containing protein...    52   2e-07
AT5G26610.2 | Symbols:  | D111/G-patch domain-containing protein...    52   2e-07
AT5G26610.1 | Symbols:  | D111/G-patch domain-containing protein...    52   2e-07
AT5G08535.1 | Symbols:  | D111/G-patch domain-containing protein...    48   3e-06
AT5G08535.2 | Symbols:  | D111/G-patch domain-containing protein...    48   3e-06

>AT3G52120.1 | Symbols:  | SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / D111/G-patch
           domain-containing protein | chr3:19329243-19331738
           FORWARD LENGTH=443
          Length = 443

 Score =  270 bits (689), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 128/167 (76%), Positives = 144/167 (86%), Gaps = 10/167 (5%)

Query: 1   MEFYMKKAAREERSKQPKQSKDEMPPPASLQG----------KKGHHMGDYIPLEELEKF 50
           MEFYMKKAA+EE+ ++P+QSKDEMPPPASLQG          K+GHHMGDYIPLEEL+KF
Sbjct: 277 MEFYMKKAAQEEKMRRPRQSKDEMPPPASLQGPSETSSTDPGKRGHHMGDYIPLEELDKF 336

Query: 51  MASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVK 110
           ++ CNDA AQK  KE AEKAKIQADNVGHKLLSKMGWKEGEG+G SRKG++DPIMAG+VK
Sbjct: 337 LSKCNDAAAQKATKEAAEKAKIQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDVK 396

Query: 111 KDHLGVGAVQPGEVTSEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 157
            ++LGVGA  PGEV  EDDIYEQYKKRMMLGY+HRPNPL NPRKAYY
Sbjct: 397 TNNLGVGASAPGEVKPEDDIYEQYKKRMMLGYKHRPNPLGNPRKAYY 443


>AT3G52120.2 | Symbols:  | SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / D111/G-patch
           domain-containing protein | chr3:19329243-19331466
           FORWARD LENGTH=414
          Length = 414

 Score =  156 bits (395), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 85/103 (82%), Gaps = 10/103 (9%)

Query: 1   MEFYMKKAAREERSKQPKQSKDEMPPPASLQG----------KKGHHMGDYIPLEELEKF 50
           MEFYMKKAA+EE+ ++P+QSKDEMPPPASLQG          K+GHHMGDYIPLEEL+KF
Sbjct: 277 MEFYMKKAAQEEKMRRPRQSKDEMPPPASLQGPSETSSTDPGKRGHHMGDYIPLEELDKF 336

Query: 51  MASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGL 93
           ++ CNDA AQK  KE AEKAKIQADNVGHKLLSKMGWKEG  L
Sbjct: 337 LSKCNDAAAQKATKEAAEKAKIQADNVGHKLLSKMGWKEGAYL 379


>AT5G26610.3 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:9375456-9376991 FORWARD LENGTH=301
          Length = 301

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 33/137 (24%)

Query: 36  HHMGDYIPLEELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGG 95
           H + + + LE++E+  AS +               KI + NVG +LL KMGWK G+GLG 
Sbjct: 44  HRVTENVDLEDVEQ--ASLD--------------VKISSSNVGFRLLQKMGWK-GKGLGK 86

Query: 96  SRKGISDPIMAGNVKKDHLGVGAVQPGE-VTSEDDIYEQ------------YKKRMMLGY 142
             +GI++PI +G ++   LG+G  +  +  T+E++I  +             KKR +L  
Sbjct: 87  QEQGITEPIKSG-IRDRRLGLGKQEEDDYFTAEENIQRKKLDIEIEETEEIAKKREVLAE 145

Query: 143 RHR--PNPLNNPRKAYY 157
           R +   + +   RK +Y
Sbjct: 146 REQKIQSDVKEIRKVFY 162


>AT5G26610.2 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:9375456-9376991 FORWARD LENGTH=301
          Length = 301

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 33/137 (24%)

Query: 36  HHMGDYIPLEELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGG 95
           H + + + LE++E+  AS +               KI + NVG +LL KMGWK G+GLG 
Sbjct: 44  HRVTENVDLEDVEQ--ASLD--------------VKISSSNVGFRLLQKMGWK-GKGLGK 86

Query: 96  SRKGISDPIMAGNVKKDHLGVGAVQPGE-VTSEDDIYEQ------------YKKRMMLGY 142
             +GI++PI +G ++   LG+G  +  +  T+E++I  +             KKR +L  
Sbjct: 87  QEQGITEPIKSG-IRDRRLGLGKQEEDDYFTAEENIQRKKLDIEIEETEEIAKKREVLAE 145

Query: 143 RHR--PNPLNNPRKAYY 157
           R +   + +   RK +Y
Sbjct: 146 REQKIQSDVKEIRKVFY 162


>AT5G26610.1 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:9375456-9376991 FORWARD LENGTH=301
          Length = 301

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 33/137 (24%)

Query: 36  HHMGDYIPLEELEKFMASCNDAGAQKVLKETAEKAKIQADNVGHKLLSKMGWKEGEGLGG 95
           H + + + LE++E+  AS +               KI + NVG +LL KMGWK G+GLG 
Sbjct: 44  HRVTENVDLEDVEQ--ASLD--------------VKISSSNVGFRLLQKMGWK-GKGLGK 86

Query: 96  SRKGISDPIMAGNVKKDHLGVGAVQPGE-VTSEDDIYEQ------------YKKRMMLGY 142
             +GI++PI +G ++   LG+G  +  +  T+E++I  +             KKR +L  
Sbjct: 87  QEQGITEPIKSG-IRDRRLGLGKQEEDDYFTAEENIQRKKLDIEIEETEEIAKKREVLAE 145

Query: 143 RHR--PNPLNNPRKAYY 157
           R +   + +   RK +Y
Sbjct: 146 REQKIQSDVKEIRKVFY 162


>AT5G08535.1 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:2762455-2763320 FORWARD LENGTH=141
          Length = 141

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 70  AKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDHLGVGAVQPG 122
           A I + N+G +LL K GWKEG GLG + +GI  P+ A   K +  GVGA QP 
Sbjct: 37  AAINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNKRGVGAKQPA 88


>AT5G08535.2 | Symbols:  | D111/G-patch domain-containing protein |
           chr5:2762722-2763320 FORWARD LENGTH=116
          Length = 116

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 70  AKIQADNVGHKLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDHLGVGAVQPG 122
           A I + N+G +LL K GWKEG GLG + +GI  P+ A   K +  GVGA QP 
Sbjct: 12  AAINSSNIGFQLLKKHGWKEGTGLGIAEQGILVPLQA-EPKHNKRGVGAKQPA 63