Miyakogusa Predicted Gene

Lj2g3v3303470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3303470.1 tr|G7KEH7|G7KEH7_MEDTR Ribosomal RNA small
subunit methyltransferase OS=Medicago truncatula
GN=MTR_5,88.02,0,rsmB: ribosomal RNA small subunit
methyltransferas,rRNA small subunit methyltransferase B;
RCMTFMUVI,CUFF.39959.1
         (528 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13180.1 | Symbols:  | NOL1/NOP2/sun family protein / antiter...   761   0.0  
AT4G26600.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...   111   1e-24
AT5G55920.1 | Symbols: OLI2 | S-adenosyl-L-methionine-dependent ...   110   2e-24
AT5G26180.2 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    83   4e-16
AT5G26180.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    83   4e-16
AT4G40000.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    67   2e-11
AT2G22400.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    66   5e-11
AT1G06560.1 | Symbols:  | NOL1/NOP2/sun family protein | chr1:20...    56   5e-08

>AT3G13180.1 | Symbols:  | NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein |
           chr3:4236326-4239966 REVERSE LENGTH=523
          Length = 523

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/527 (72%), Positives = 434/527 (82%), Gaps = 7/527 (1%)

Query: 1   MAQGLSLVSPFPTEPQKXXXXXILLKLPHRTRSTNTSIPTTNKGPANRSLKPQKLNSEIS 60
           MAQ LS       E QK            RT+ T        +GP   S K Q LN E+S
Sbjct: 1   MAQLLSFRVYLSAETQKASPGSF-----KRTQKTRKPFSPDRRGPVAPSRKSQNLNLEVS 55

Query: 61  PHRAVSAVRLMRIEFGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDI 120
           PHRAVSAVRLMRIE+GGAFADLLNEKGKGSG NEM YV+RT+GFRTR+L+  DLRLVTD+
Sbjct: 56  PHRAVSAVRLMRIEYGGAFADLLNEKGKGSGSNEMSYVERTIGFRTRDLDDRDLRLVTDV 115

Query: 121 VGGTIRWRRYLDHLISSLCH-DKDISSMEPLLLQILRIGFYEIVKLEMPPYAVVDENVRL 179
           VGGTIRWRRYLDHLI SLCH ++   +MEPLLLQILRIG YEI+K +MPPYAVVDENVRL
Sbjct: 116 VGGTIRWRRYLDHLIGSLCHNERTFRNMEPLLLQILRIGVYEIIKRDMPPYAVVDENVRL 175

Query: 180 AKTALRPGAGNMVNGILRKLVVLKENETLPLPKVEGDDRAQARALATLYSHPVWMVRRWI 239
           AK ALRPGAG+ VNGILRKLV LKE + LPLPKVEGDDRAQARALATL+SHPVWMVRRW+
Sbjct: 176 AKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALATLHSHPVWMVRRWV 235

Query: 240 KCLGQEEAIKLMIWNNSEPSFSLRANSARGFSRDDLVTQLNALKVPHKLSMYLDEFVRIK 299
           K LG +EA KLMIWNN++P FSLRAN+ R  +R DLV +LN+LKVPH+LS++L+EFVRIK
Sbjct: 236 KYLGLDEATKLMIWNNNDPGFSLRANTGRDITRADLVERLNSLKVPHELSLHLEEFVRIK 295

Query: 300 TGLQIIIHAGLLKKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQ 359
           TGLQ ++ AGLLK+G+CSVQDESAGLIVS+V PQPGE I+D CAAPGGKTL+MAS L GQ
Sbjct: 296 TGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQ 355

Query: 360 GMIYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTEDSGPLKSNKVLLDAPCSGL 419
           GMIYA+DVN GRLRIL ETAK HQVDG++TT+H+DLR   E +  ++ +KVLLDAPCSGL
Sbjct: 356 GMIYAMDVNEGRLRILGETAKSHQVDGLITTIHSDLRVFAE-TNEVQYDKVLLDAPCSGL 414

Query: 420 GVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAA 479
           GVLSKRADLRWNRKLEDM +L KLQDELLD+ASKLV  GGVLVYSTCSIDPEEN+ R+ A
Sbjct: 415 GVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEA 474

Query: 480 FLVRHPDFHIDPVDRYVPPDFVTHSGFYFSNPVKHSLDGSFAARLVR 526
           FL+RHP+F IDPV  +VP  FVT  GF+ SNPVKHSLDG+FAARLVR
Sbjct: 475 FLLRHPEFTIDPVTSFVPSSFVTSQGFFLSNPVKHSLDGAFAARLVR 521


>AT4G26600.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr4:13419629-13423418 FORWARD LENGTH=671
          Length = 671

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 26/232 (11%)

Query: 314 GLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNSGRLR 373
           G   +Q  S+ L V  + P+  E +VD  AAPGGKT Y+A+ +   G+IYA ++   RL+
Sbjct: 322 GFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEMKVPRLK 381

Query: 374 ILKETAKLHQVDGVVTTV--HADLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRADLRWN 431
            L  +A LH++ GV  T+  + D R LT+  G    ++VLLDAPCSG GV+SK   ++ +
Sbjct: 382 SL--SANLHRM-GVTNTIVCNYDGRELTKVLGQSSVDRVLLDAPCSGTGVISKDESVKTS 438

Query: 432 RKLEDMEQLKKLQDELLDAASKLVNP----GGVLVYSTCSIDPEENDERIAAFLVRHPDF 487
           +  +D+++   LQ +L+  A  LV+     GG +VYSTCS+   EN E +  + +++ D 
Sbjct: 439 KSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPEN-EAVIDYALKNRDV 497

Query: 488 HIDPV-------------DRYVPPDFVTHSGFYFSNPVKHSLDGSFAARLVR 526
            + P              +    P       FY   P  H++DG F A+L +
Sbjct: 498 KLVPCGLDFGRPGFSSFREHRFHPSLEKTRRFY---PHVHNMDGFFVAKLKK 546


>AT5G55920.1 | Symbols: OLI2 | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:22645742-22649383 REVERSE LENGTH=682
          Length = 682

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 24/231 (10%)

Query: 314 GLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNSGRLR 373
           G   +Q  S+ L V  + P+  E IVD  AAPGGKT Y+A+ +   G+IYA ++   RL+
Sbjct: 339 GYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEMKVPRLK 398

Query: 374 ILKETAKLHQVDGVVTTV--HADLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRADLRWN 431
            L  TA LH++ GV  T+  + D R L +  G    ++VLLDAPCSG G++SK   ++  
Sbjct: 399 SL--TANLHRM-GVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSGTGIISKDESVKIT 455

Query: 432 RKLEDMEQLKKLQDELLDAASKLVNP----GGVLVYSTCSIDPEENDERIAAFLVRHP-- 485
           + ++++++   LQ +LL AA  +V+     GG +VYSTCSI   EN+  I   L +    
Sbjct: 456 KTMDEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENEAVIDYALKKRDVK 515

Query: 486 ------DFHIDPVDRY----VPPDFVTHSGFYFSNPVKHSLDGSFAARLVR 526
                 DF      R+      P       FY   P  H++DG F A+L +
Sbjct: 516 LVTCGLDFGRKGFTRFREHRFQPSLDKTRRFY---PHVHNMDGFFVAKLKK 563


>AT5G26180.2 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:9149253-9152595 FORWARD LENGTH=567
          Length = 567

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 306 IHAG-LLKKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYA 364
           +HA  L+  G   +Q +++ ++ + + PQ G  ++D C+APG KT+++A+ + GQG I A
Sbjct: 275 LHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIA 334

Query: 365 VDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLT-EDSGPLKSNKVLLDAPCSGLGVLS 423
            ++N  R++ L+ T KL      +   H D   L  +D    K   +LLD  CSG G ++
Sbjct: 335 CELNEERVKRLEHTIKLSGASN-IEVCHGDFLGLNPKDPSFAKIRAILLDPSCSGSGTIT 393

Query: 424 KRADLRWNRKLED---------MEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEEND 474
            R D       ED         + +L   Q + L  A        V VYSTCSI   EN+
Sbjct: 394 DRLDHLLPSHSEDNNMNYDSMRLHKLAVFQKKALAHALSFPKVERV-VYSTCSIYQIENE 452

Query: 475 ERIAAFL 481
           + +++ L
Sbjct: 453 DVVSSVL 459


>AT5G26180.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:9149253-9152595 FORWARD LENGTH=567
          Length = 567

 Score = 83.2 bits (204), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 13/187 (6%)

Query: 306 IHAG-LLKKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYA 364
           +HA  L+  G   +Q +++ ++ + + PQ G  ++D C+APG KT+++A+ + GQG I A
Sbjct: 275 LHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKIIA 334

Query: 365 VDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLT-EDSGPLKSNKVLLDAPCSGLGVLS 423
            ++N  R++ L+ T KL      +   H D   L  +D    K   +LLD  CSG G ++
Sbjct: 335 CELNEERVKRLEHTIKLSGASN-IEVCHGDFLGLNPKDPSFAKIRAILLDPSCSGSGTIT 393

Query: 424 KRADLRWNRKLED---------MEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEEND 474
            R D       ED         + +L   Q + L  A        V VYSTCSI   EN+
Sbjct: 394 DRLDHLLPSHSEDNNMNYDSMRLHKLAVFQKKALAHALSFPKVERV-VYSTCSIYQIENE 452

Query: 475 ERIAAFL 481
           + +++ L
Sbjct: 453 DVVSSVL 459


>AT4G40000.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr4:18543989-18547443 REVERSE LENGTH=783
          Length = 783

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 90/190 (47%), Gaps = 28/190 (14%)

Query: 329 IVDPQPGETIVDCCAAPGGKTLYMAS--HLSGQ------GMIYAVDVNSGRLRIL-KETA 379
            +D  P   ++D CAAPG KT  +    H S +      GM+ A DV+  R  +L  +T 
Sbjct: 173 FLDVHPDHFVLDMCAAPGSKTFQLLEIIHESSEPGSLPNGMVVANDVDYKRSNLLIHQTK 232

Query: 380 KLHQVDGVVTTVHAD-------LRTLT--EDSGP-----LKSNKVLLDAPCSGLGVLSKR 425
           +    + +VT             RTL+   ++ P     L  ++VL D PCSG G L K 
Sbjct: 233 RTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPHPIDQLLFDRVLCDVPCSGDGTLRKA 292

Query: 426 ADL--RWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAFLVR 483
            D+  RWN    +   L  LQ  L      L+  GG +VYSTCS++P E DE + A ++R
Sbjct: 293 PDIWRRWNSGSGN--GLHSLQVVLAMRGLSLLKVGGRMVYSTCSMNPIE-DEAVVAEILR 349

Query: 484 HPDFHIDPVD 493
                ++ VD
Sbjct: 350 RCGCSVELVD 359


>AT2G22400.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr2:9504823-9508788 REVERSE LENGTH=808
          Length = 808

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 84/184 (45%), Gaps = 28/184 (15%)

Query: 329 IVDPQPGETIVDCCAAPGGKTLYMAS--HLSGQ------GMIYAVDVNSGRLRILKETAK 380
            +D  P   ++D CAAPG KT  +    H + +      G++ A DV+  R  +L    K
Sbjct: 180 FLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDVDFKRSNLLIHQTK 239

Query: 381 LHQVDGVVTTVH--------------ADLRTLTEDS--GPLKSNKVLLDAPCSGLGVLSK 424
                 ++ T H              A  + ++E+     L  ++VL D PCSG G L K
Sbjct: 240 RMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVLCDVPCSGDGTLRK 299

Query: 425 RADL--RWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAFLV 482
             D+  +WN  + +   L  LQ  L      L+  GG ++YSTCS++P E++  +A  L 
Sbjct: 300 APDIWRKWNSGMGN--GLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPVEDEAVVAEILR 357

Query: 483 RHPD 486
           R  D
Sbjct: 358 RCGD 361


>AT1G06560.1 | Symbols:  | NOL1/NOP2/sun family protein |
           chr1:2007660-2011824 FORWARD LENGTH=599
          Length = 599

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 404 PLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKK---LQDELLDAASKLVNPGGV 460
           P   ++VLLDAPCS LG+       R    LE +  L+     Q ++LD A +LV  GG+
Sbjct: 456 PNSFDRVLLDAPCSALGLRP-----RLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGI 510

Query: 461 LVYSTCSIDPEENDERIAAFLVRHPDFHIDP 491
           LVYSTC+I+P EN+  +   L ++    + P
Sbjct: 511 LVYSTCTINPSENEAVVRYALDKYRFLSLAP 541



 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 6/102 (5%)

Query: 275 LVTQLNALKVPHKLSMYLDEFVRIKTGLQIIIHAGLLKKGLCSVQDESAGLIVSIVDPQP 334
           ++++    +VP+ +++ L+  V     L  I+   +  + L S+      ++   +DPQ 
Sbjct: 243 MLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEIFLQNLPSI------IVAHALDPQK 296

Query: 335 GETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNSGRLRILK 376
           GE I+D CAAPGGKT  +A  ++ +G I A D +  ++ +++
Sbjct: 297 GERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLVVQ 338