Miyakogusa Predicted Gene

Lj2g3v3303460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3303460.1 tr|F4K694|F4K694_ARATH RPM1-interacting protein 4
(RIN4) family protein OS=Arabidopsis thaliana
GN=N,67.53,2e-19,AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.39956.1
         (78 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...   100   2e-22
AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    93   4e-20
AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    92   7e-20
AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    89   4e-19
AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    76   5e-15
AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    68   1e-12
AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    66   4e-12
AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    64   3e-11
AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    64   3e-11
AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:...    52   6e-08

>AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604850 FORWARD
          LENGTH=95
          Length = 95

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 59/77 (76%), Gaps = 2/77 (2%)

Query: 4  DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGK-VDSHTRP-PLDHGK 61
          DK RPLPKFGEWDVNDPASAEG+TVIFNKARDEKKTGGKP SPGK  + H +    D  K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 62 TQSKSWFCCVQSPPAES 78
           Q K W CC+Q+P  +S
Sbjct: 79 PQPKKWLCCMQAPAVDS 95


>AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr2:1534012-1535040 REVERSE LENGTH=73
          Length = 73

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query: 3  SDKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDHGKT 62
          +DK RPLPKFGEWDVNDP+SAEG+TVIFNKAR+EKK GGK DSPGK +       +  + 
Sbjct: 2  ADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGKDEPGYNKNGEVLEK 61

Query: 63 QSKSWFCCVQS 73
           +K WFCC+++
Sbjct: 62 PAKKWFCCIRA 72


>AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604951 FORWARD
          LENGTH=114
          Length = 114

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/46 (93%), Positives = 44/46 (95%)

Query: 3  SDKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGK 48
          SDK RPLPKFGEWDVNDPASAEG+TVIFNKARDEKKTGGKP SPGK
Sbjct: 2  SDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK 47


>AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604951 FORWARD
          LENGTH=130
          Length = 130

 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/45 (93%), Positives = 43/45 (95%)

Query: 4  DKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGK 48
          DK RPLPKFGEWDVNDPASAEG+TVIFNKARDEKKTGGKP SPGK
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK 63


>AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:16280410-16280883 REVERSE
          LENGTH=73
          Length = 73

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 10/69 (14%)

Query: 6  DRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDHGKTQ-- 63
          DRPLPKFGEWDVNDPASAEG+TVIF KARD+KKT    ++ G+  S  R   D+ K+Q  
Sbjct: 12 DRPLPKFGEWDVNDPASAEGFTVIFAKARDDKKT----NASGRAASQRR---DNNKSQDE 64

Query: 64 -SKSWFCCV 71
           +K  FCC 
Sbjct: 65 PTKKRFCCF 73


>AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:25365498-25365949 REVERSE
          LENGTH=80
          Length = 80

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 40/49 (81%), Gaps = 4/49 (8%)

Query: 1  MSSDKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKT----GGKPDS 45
          M+ +K +PLPKFGEWDVN+PASAEG+TVIF+KA DEKKT    G  P+S
Sbjct: 1  MAENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49


>AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr4:16910755-16910961 FORWARD
          LENGTH=68
          Length = 68

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 48/74 (64%), Gaps = 7/74 (9%)

Query: 1  MSSDKD-RPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDH 59
          M+S+ D RPLPKFGEWDVNDPA+AEG+TVIF+KA ++KKTG    S  K  S  +     
Sbjct: 1  MASNSDARPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTG---RSSSKAPSQRK---QD 54

Query: 60 GKTQSKSWFCCVQS 73
          G   +K W C   S
Sbjct: 55 GVKPTKKWLCFTFS 68


>AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr3:17944232-17944788 REVERSE
          LENGTH=89
          Length = 89

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 2  SSDKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKT 39
          + ++ RPLPKFGEWD  +P SAEG+TVIFNKARD+KKT
Sbjct: 3  TGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40


>AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr2:7673359-7673568 FORWARD LENGTH=69
          Length = 69

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 2  SSDKDRPLPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSHTRPPLDHGK 61
          S++  R LPKFGEWDVNDPA+A+G+TVIF+KA ++KKTG    S  K +S  +   D  K
Sbjct: 3  SNEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTG---RSSTKTNSQRKQ--DGDK 57

Query: 62 TQSKSWFC 69
             K W C
Sbjct: 58 PAVKKWLC 65


>AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 |
           chr3:9132458-9133747 FORWARD LENGTH=211
          Length = 211

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 31/44 (70%)

Query: 9   LPKFGEWDVNDPASAEGYTVIFNKARDEKKTGGKPDSPGKVDSH 52
           +PKFG+WD N+P+SA+GYT IFNK R+E+ +G       +  +H
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTH 191