Miyakogusa Predicted Gene

Lj2g3v3260160.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3260160.1 tr|Q2HTB8|Q2HTB8_MEDTR Harpin-induced 1
OS=Medicago truncatula GN=MTR_7g118270 PE=4
SV=1,57.47,0.000000000001,seg,NULL,
NODE_48089_length_1057_cov_104.220436.path2.1
         (101 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01410.1 | Symbols:  | Late embryogenesis abundant (LEA) hydr...    54   2e-08

>AT4G01410.1 | Symbols:  | Late embryogenesis abundant (LEA)
          hydroxyproline-rich glycoprotein family |
          chr4:578308-578991 FORWARD LENGTH=227
          Length = 227

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 28/39 (71%)

Query: 45 KRAACTFITVFLLAVGITLLVLWLVYRPHKPRFTAVGAA 83
          +RA C  I   L+ +GI  L+LWLVYRPHKPR T VGAA
Sbjct: 41 RRAICGAIFTILVILGIIALILWLVYRPHKPRLTVVGAA 79