Miyakogusa Predicted Gene

Lj2g3v3260050.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3260050.1 Non Chatacterized Hit- tr|A9P1T0|A9P1T0_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,37.74,0.000000000000002,RNA recognition motif,RNA recognition motif
domain; RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAME,NODE_45338_length_580_cov_92.408623.path2.1
         (152 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01080.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   169   5e-43
AT1G01080.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   165   9e-42
AT1G60000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    68   3e-12
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr...    65   2e-11
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3...    62   1e-10
AT3G52150.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    61   3e-10
AT3G52150.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    61   3e-10
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN...    60   6e-10
AT2G35410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    55   2e-08
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5...    52   2e-07
AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    52   2e-07
AT4G16280.4 | Symbols:  | RNA binding;abscisic acid binding | ch...    50   8e-07
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29...    50   8e-07
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29...    50   8e-07
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29...    50   8e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |...    50   8e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |...    49   9e-07
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29...    49   1e-06
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro...    49   2e-06

>AT1G01080.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:45503-46789 REVERSE LENGTH=293
          Length = 293

 Score =  169 bits (429), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 83/161 (51%), Positives = 115/161 (71%), Gaps = 9/161 (5%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           MF+P GT+IS EV R+ Q+GES+G  YVTM SI SAK A+++LDG +VGGREMRVR+SV+
Sbjct: 127 MFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVD 186

Query: 61  VNP-RGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQD 119
           +NP   RN E +NS+P++ + YE+ HK+YVGNL     P+ +R  F++FG + S R+L D
Sbjct: 187 MNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHD 246

Query: 120 LKQG--------PYLSERERDAAMSLNGTEFCGRKIVVRQG 152
            K G         + S  ERDAA+S NGT++ GR+I+VR+G
Sbjct: 247 RKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREG 287


>AT1G01080.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:45503-46789 REVERSE LENGTH=294
          Length = 294

 Score =  165 bits (418), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 83/162 (51%), Positives = 115/162 (70%), Gaps = 10/162 (6%)

Query: 1   MFRPHGTIISAEVC-RHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSV 59
           MF+P GT+IS EV  R+ Q+GES+G  YVTM SI SAK A+++LDG +VGGREMRVR+SV
Sbjct: 127 MFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSV 186

Query: 60  EVNP-RGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
           ++NP   RN E +NS+P++ + YE+ HK+YVGNL     P+ +R  F++FG + S R+L 
Sbjct: 187 DMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLH 246

Query: 119 DLKQG--------PYLSERERDAAMSLNGTEFCGRKIVVRQG 152
           D K G         + S  ERDAA+S NGT++ GR+I+VR+G
Sbjct: 247 DRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREG 288


>AT1G60000.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:22093678-22094540 REVERSE LENGTH=258
          Length = 258

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 20/147 (13%)

Query: 12  EVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRNLETM 71
           EV  +  +G+S+G A+VTMS++      +  LDG +  GR ++V F+ +  P        
Sbjct: 115 EVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKP-------- 166

Query: 72  NSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQG-------- 123
           N  P   +Y E  HKL+VGNL+ + T E +   F   G+V   R++ D   G        
Sbjct: 167 NKEP---LYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV 223

Query: 124 PYLSERERDAAM-SLNGTEFCGRKIVV 149
            Y S+ E + A+ SL+G E  GR I V
Sbjct: 224 CYSSKAEMETALESLDGFELEGRAIRV 250


>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
           protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
          Length = 329

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   GT++  ++     +  S+G  +VTM SI  AK A+   +   +GGR ++V F  E
Sbjct: 135 IFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFP-E 193

Query: 61  VNPRGRNLETMNSSPRRT--IYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
           V PRG   E M +  R     Y ++PHK+Y GNL  + T + ++  F     V   +++ 
Sbjct: 194 V-PRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIY 252

Query: 119 DLKQG-----PYLS----ERERDAAMSLNGTEFCGRKI 147
           +   G      ++S    E  + A  ++NG E  GR +
Sbjct: 253 ERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRAL 290


>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
           | chr5:20452677-20453965 REVERSE LENGTH=289
          Length = 289

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 18/158 (11%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   GT+  +EV  +  + +S+G  +VTMS++  A+ AV   +  +V GR + V  +  
Sbjct: 132 LFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAA- 190

Query: 61  VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
             PRG   E      R+   Y+A  ++YVGNL        +  LF+  G V   R++ D 
Sbjct: 191 --PRGSRPE------RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDR 242

Query: 121 KQG--------PYLSERERDAAM-SLNGTEFCGRKIVV 149
           + G           +E E + A+ +L+G    GR I V
Sbjct: 243 ETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKV 280


>AT3G52150.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19342074-19343090 FORWARD LENGTH=253
          Length = 253

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 5   HGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR 64
           HG +   +V     SG S+   + TM S+  A   V  L+G  V GRE++V  + +    
Sbjct: 99  HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIAS 158

Query: 65  GRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ----DL 120
             +L  + S    + + ++P+K+YVGNLA + T E +  LF+  G V S ++ +      
Sbjct: 159 SPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSK 216

Query: 121 KQG----PYLSERERDAAM-SLNGTEFCGRKIVVRQG 152
             G     + SE + +AA+ +LN +   G+KI V + 
Sbjct: 217 STGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253


>AT3G52150.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr3:19342074-19343090 FORWARD LENGTH=253
          Length = 253

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 5   HGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPR 64
           HG +   +V     SG S+   + TM S+  A   V  L+G  V GRE++V  + +    
Sbjct: 99  HGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIAS 158

Query: 65  GRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ----DL 120
             +L  + S    + + ++P+K+YVGNLA + T E +  LF+  G V S ++ +      
Sbjct: 159 SPDLSVLQS--EDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSK 216

Query: 121 KQG----PYLSERERDAAM-SLNGTEFCGRKIVVRQG 152
             G     + SE + +AA+ +LN +   G+KI V + 
Sbjct: 217 STGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253


>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
           binding protein | chr4:12766223-12767952 REVERSE
           LENGTH=329
          Length = 329

 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 9/123 (7%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   GT+  AEV  + ++ +S+G  +VTMSS+  A+ AV   +  D+ GR + V    +
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN---K 225

Query: 61  VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDL 120
             PRG   E    +PR    YE   ++YVGNL        +  LF+  G V   R++ D 
Sbjct: 226 AAPRGSRPER---APR---VYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDR 279

Query: 121 KQG 123
           + G
Sbjct: 280 ETG 282



 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F  HG ++ A V    ++G S+G  +VTMS +     A+SALDG ++ GR +RV  + E
Sbjct: 263 LFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322

Query: 61  VNPR 64
             PR
Sbjct: 323 RPPR 326


>AT2G35410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:14898341-14899590 FORWARD LENGTH=308
          Length = 308

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 24/165 (14%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   GT+ + E+ R  + G+++G A+VTM+S   A+ A+   D   V GR + V F   
Sbjct: 114 LFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSF--- 169

Query: 61  VNPRGRNLETMNSSPRRTIYYEAP----HKLYVGNLAMSATPEDVRYLF--ARFGNVASV 114
                R  +         +   AP    HKLYV NLA  A    +R LF  A F N  S 
Sbjct: 170 ----ARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADF-NPVSA 224

Query: 115 RLLQDLKQG-----PYLS----ERERDAAMSLNGTEFCGRKIVVR 150
           R++    +G      ++S    E   +A   LNG E  GR I ++
Sbjct: 225 RVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLK 269


>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
           chr3:5558676-5560993 REVERSE LENGTH=537
          Length = 537

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 19/149 (12%)

Query: 8   IISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEVNPRGRN 67
           ++S  +CR++ +G+S   AY+   S  SA NA++ L+  D+ G+ MR+ +S       R+
Sbjct: 47  VVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGKAMRIMWS------QRD 100

Query: 68  LETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLKQGPYLS 127
           L    +  RRT    A   LYV NL  S T   +  +F  FG++ S +++++  Q     
Sbjct: 101 L----AYRRRTRTGFA--NLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFG 154

Query: 128 ERERDAAMS-------LNGTEFCGRKIVV 149
             + D   S       L+G+   G+K+ V
Sbjct: 155 FVQFDTEQSAVSARSALHGSMVYGKKLFV 183



 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 13/119 (10%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           MF P G+I+S +V    ++G+SKG  +V   +  SA +A SAL G  V G+++ V   + 
Sbjct: 131 MFCPFGSILSCKVVE--ENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFIN 188

Query: 61  VNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQD 119
            + R       +S+            +YV NL  + T + +  LF+++G V+SV +++D
Sbjct: 189 KDERAAMAGNQDST-----------NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD 236


>AT2G37220.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:15634980-15636331 REVERSE LENGTH=289
          Length = 289

 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 25/173 (14%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   G +   EV     +G S+G  +VTMSS+   + A    +G ++ GR +RV     
Sbjct: 110 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGP- 168

Query: 61  VNPRGRNLETMNSSPR-------------RTIYYEAPHKLYVGNLAMSATPEDVRYLFAR 107
             P  +  +  +  PR                   + +++YVGNL+       +  LF+ 
Sbjct: 169 --PPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSE 226

Query: 108 FGNVASVRLLQDLKQG--------PYLSERE-RDAAMSLNGTEFCGRKIVVRQ 151
            G V   R++ D   G         Y S +E ++A  SL+G +  GR+I V +
Sbjct: 227 QGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSE 279


>AT4G16280.4 | Symbols:  | RNA binding;abscisic acid binding |
           chr4:9207164-9214187 REVERSE LENGTH=672
          Length = 672

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 29/163 (17%)

Query: 2   FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG---LDVGGREMRVRFS 58
           F  HG ++   + +  ++G+ +GC +V  ++   A  A+ AL     L  G   ++VR++
Sbjct: 65  FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 124

Query: 59  VEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
                R   LE                KL+VG+L   AT ++V  +F +FG+V  V L++
Sbjct: 125 DGERERIGTLE---------------FKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMR 169

Query: 119 D-LKQG---PYLSERERDAAMS----LNGT---EFCGRKIVVR 150
           D  +Q     ++    ++ AM+    LNGT     C + ++VR
Sbjct: 170 DEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 212


>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   G ++ A V     SG SKG  +VT+SS    + A+++L+G D+ GR++RV  +  
Sbjct: 276 LFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEA 335

Query: 61  VNPRGR 66
             PRG+
Sbjct: 336 RPPRGQ 341


>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   G ++ A V     SG SKG  +VT+SS    + A+++L+G D+ GR++RV  +  
Sbjct: 276 LFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEA 335

Query: 61  VNPRGR 66
             PRG+
Sbjct: 336 RPPRGQ 341


>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=342
          Length = 342

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   G ++ A V     SG SKG  +VT+SS    + A+++L+G D+ GR++RV  +  
Sbjct: 276 LFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEA 335

Query: 61  VNPRGR 66
             PRG+
Sbjct: 336 RPPRGQ 341


>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9207164-9214412 REVERSE LENGTH=747
          Length = 747

 Score = 49.7 bits (117), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 29/163 (17%)

Query: 2   FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG---LDVGGREMRVRFS 58
           F  HG ++   + +  ++G+ +GC +V  ++   A  A+ AL     L  G   ++VR++
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199

Query: 59  VEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
                R   LE                KL+VG+L   AT ++V  +F +FG+V  V L++
Sbjct: 200 DGERERIGTLE---------------FKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMR 244

Query: 119 D-LKQG---PYLSERERDAAMS----LNGT---EFCGRKIVVR 150
           D  +Q     ++    ++ AM+    LNGT     C + ++VR
Sbjct: 245 DEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 287


>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
           chr4:9208564-9214412 REVERSE LENGTH=533
          Length = 533

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 29/163 (17%)

Query: 2   FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDG---LDVGGREMRVRFS 58
           F  HG ++   + +  ++G+ +GC +V  ++   A  A+ AL     L  G   ++VR++
Sbjct: 140 FEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA 199

Query: 59  VEVNPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQ 118
                R   LE                KL+VG+L   AT ++V  +F +FG+V  V L++
Sbjct: 200 DGERERIGTLE---------------FKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMR 244

Query: 119 D-LKQG---PYLSERERDAAMS----LNGT---EFCGRKIVVR 150
           D  +Q     ++    ++ AM+    LNGT     C + ++VR
Sbjct: 245 DEYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 287


>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
           chr3:19819738-19821423 REVERSE LENGTH=363
          Length = 363

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 39/66 (59%)

Query: 1   MFRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVE 60
           +F   G ++ A V     SG SKG  +VT+SS    + A+++L+G D+ GR++RV  +  
Sbjct: 297 LFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEA 356

Query: 61  VNPRGR 66
             PRG+
Sbjct: 357 RPPRGQ 362


>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
           protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
          Length = 629

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 20/156 (12%)

Query: 2   FRPHGTIISAEVCRHAQSGESKGCAYVTMSSIVSAKNAVSALDGLDVGGREMRVRFSVEV 61
           F   G I+S +V   + SG+SKG  +V  ++  SA+ A+  L+G+ +  ++      V V
Sbjct: 144 FSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQ------VYV 196

Query: 62  NPRGRNLETMNSSPRRTIYYEAPHKLYVGNLAMSATPEDVRYLFARFGNVASVRLLQDLK 121
            P  R  E  +S+  +T +      +YV NLA S T +D++  F  +G + S  +++D +
Sbjct: 197 GPFLRRQER-DSTANKTKF----TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE 251

Query: 122 Q-----GPYLSERERDAA---MSLNGTEFCGRKIVV 149
                 G    E   DAA    SLNG +F  ++  V
Sbjct: 252 GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV 287