Miyakogusa Predicted Gene
- Lj2g3v3248940.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3248940.1 Non Chatacterized Hit- tr|I1M6I7|I1M6I7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.46432 PE,71.57,0,no
description,Nucleotide-binding, alpha-beta plait; RRM,RNA recognition
motif domain; ZF_C3H1,Zinc ,CUFF.39930.1
(512 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 381 e-106
AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein... 303 2e-82
AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein... 183 2e-46
AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein... 183 2e-46
AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 173 2e-43
AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein wi... 157 1e-38
AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein wi... 157 1e-38
AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein wi... 157 1e-38
AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 8e-33
AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 8e-33
AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 8e-33
AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 138 1e-32
AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 135 1e-31
AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 134 1e-31
AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 2e-10
>AT2G05160.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr2:1859011-1860931 REVERSE
LENGTH=536
Length = 536
Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/477 (43%), Positives = 293/477 (61%), Gaps = 50/477 (10%)
Query: 1 MDYTR---IVFDKIQKFEPEHASKIIGYLLL-QDNGEQKMAKLASCPDQFIGEVAFKVKT 56
M++T +V +IQ+ EPE+A+KI GYLLL Q+NG + M +LA CPD + V VK
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 57 DLQRLAIKSAVIPILPNPQQGLSHLAVISPRNLPSPPNFQVPSPYWDPLSARNTNTNPEY 116
+L R + + SPP+ +P+P + + + +
Sbjct: 61 ELAR------------------------NSHHYHSPPSDHIPTPKFGSFTGSSPLSVSVS 96
Query: 117 RAMN--YLDSMIE---LQKQTQLLSLEDHIEPANTGTGGIGIPSDYFGLDASAANVGGKS 171
M + ++ E LQ Q L+ ED + G +F + + ++
Sbjct: 97 PPMKTGFWENSTEMDTLQNNLQFLNFEDPLTSPEFSNG-------FFSQERQCLPL--RT 147
Query: 172 GRRFSSLSEFPLKICHYFNKGYCKHGTNCRYYHGHVLPE--NFSQMYG--NDTNSEDQVF 227
RR SL EFP+KICHYFNKG+CKHG NCRY+HG ++PE +F+QM+ N+ + E+ V
Sbjct: 148 SRRSPSLPEFPVKICHYFNKGFCKHGNNCRYFHGQIIPERESFAQMFNPNNNLSDEEHVV 207
Query: 228 SQGSLAQLESEIIELLKQKRGHPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYNL 287
S SL +LE EIIELLK +RG P+SIASLPM YY++Y + LQA+GYLTESQRHGK+GY+L
Sbjct: 208 SPVSLEKLEGEIIELLKLRRGAPISIASLPMMYYEKYGRTLQAEGYLTESQRHGKAGYSL 267
Query: 288 TKLLEQLNGSIRLISRPHGQHAVVLAEDAPKYI----REGDSAQNISASRQIYLTFPADS 343
TKLL +L +IRL+ RPHGQH+V+LAEDA K++ + ++ SRQIYLTFPA+S
Sbjct: 268 TKLLARLKNTIRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAES 327
Query: 344 TFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLV 403
+FTE DVS YF ++G VEDVRIPCQQ+RM+GFVTFA ETVK IL KGNPH++ +RVLV
Sbjct: 328 SFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLV 387
Query: 404 KPYKEKAKTLERKYGDRGEHSVYCSPHYVDLDSELDSMPISTGNHRSIRRQLIEEQE 460
KPY+EK+++ + H + +++ D E++++P +R+ + E E
Sbjct: 388 KPYREKSRSSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSRMRKPFLSEPE 444
>AT3G52980.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19645660-19646962 FORWARD LENGTH=381
Length = 381
Score = 303 bits (775), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 180/404 (44%), Positives = 250/404 (61%), Gaps = 54/404 (13%)
Query: 1 MDYTR---IVFDKIQKFEPEHASKIIGYLLL-QDNGEQKMAKLASCPDQFIGEVAFKVKT 56
M++T +V ++I + EPE+ASKIIGYLLL QD ++ M +LA CPD + + VK
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 57 DLQRLAIKSAVIPILPNPQ-QGLSHLAVISPRNL---PSPPN-FQVPSPYWDPLSARNTN 111
+L + + + IP + Q + L+ S ++L SPP+ + + +W+ N
Sbjct: 61 ELAKNSHYNN-IPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWE-------N 112
Query: 112 TNPEYRAMNYLDSMIELQKQTQLLSLEDHIEPANTGTGGIGIPSDYFGLDASAANVGGKS 171
TN +DS ++ Q L ED + T +F + ++ ++
Sbjct: 113 TND-------MDSSLKDNVQ-YFLDFEDSVTSPEFSTS-------FFSQKKQSLSL--RT 155
Query: 172 GRRFSSLSEFPLKICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGS 231
RR SL EFPLKICHYFNKG+CKHG NC N+ + E+ V S GS
Sbjct: 156 SRRSLSLPEFPLKICHYFNKGFCKHGNNCH----------------NNLSDEEHVVSPGS 199
Query: 232 LAQLESEIIELLKQKRGHPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLL 291
L +LE EIIELLK +RG P+SIA LPM Y+++Y + LQA+GYLTESQRHGK+G++LTKLL
Sbjct: 200 LEKLEREIIELLKSRRGAPISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLL 259
Query: 292 EQLNGSIRLISRPHGQHAVVLAEDAPKYIR-EGDSAQN---ISASRQIYLTFPADSTFTE 347
+L +IRLI RPHGQH+V+LAED K++ G+ +++ ++ SRQ+YLTFPA+S+FTE
Sbjct: 260 ARLKNTIRLIDRPHGQHSVILAEDVSKFVEYTGERSEHGAILAGSRQVYLTFPAESSFTE 319
Query: 348 EDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETVKMILEKG 391
DVS+YF+ G VEDVRIPCQQ+RM+GFVTF ETVK IL K
Sbjct: 320 HDVSNYFSEVGPVEDVRIPCQQKRMYGFVTFVYMETVKRILAKA 363
>AT3G51950.2 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 191/412 (46%), Gaps = 78/412 (18%)
Query: 4 TRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQRLAI 63
TRIV +IQ +PE+ASKI+G LLLQD+GE++M +LA P+ + V K K +L +
Sbjct: 7 TRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLMNC 66
Query: 64 KSAVIPILPNPQQGLSHLAVISPRNLPSPPNFQVPSPYWDPLSARNTNTNPEYRAMNYLD 123
+ P Q +ISP+N P++ + + ++ M+ ++
Sbjct: 67 SRS-----PWSHQD----ELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMN 117
Query: 124 SMIELQKQTQLLSLEDHIEPANTGTGGIGIPSDYFGLDASAANVGGKSGRRFSSLSEFPL 183
S + T L H + G+G GG S F +
Sbjct: 118 S-----RSTDFLG-SVHARSGSCVLDGLG--------------YGGDSDLGFGGVP---- 153
Query: 184 KICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLESEIIELL 243
C YF +G+CK+G +CR+ H D V S + L S +
Sbjct: 154 --CSYFARGFCKNGASCRFVHSD--------------GGADLVGSPSRIELLRSNSVP-- 195
Query: 244 KQKRGHPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIRLISR 303
+ H M+ +SLP G NL + Q + +I
Sbjct: 196 PRLAHHFMTRSSLP---------------------SFSTKGVNLQQNDVQRAAAALMI-- 232
Query: 304 PHGQHAVVLAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDV 363
G L P+ I SA ASRQIYLTFPADS F EEDVS+YF+TFG V+DV
Sbjct: 233 --GDELQKLGRWRPERIDL--SAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDV 288
Query: 364 RIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLER 415
RIP QQ+RMFGFVTF PETVK IL KGNPH+V SRVLVKPYKEK K ++
Sbjct: 289 RIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDK 340
>AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr3:19278244-19280407 REVERSE LENGTH=540
Length = 540
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 142/412 (34%), Positives = 191/412 (46%), Gaps = 78/412 (18%)
Query: 4 TRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQRLAI 63
TRIV +IQ +PE+ASKI+G LLLQD+GE++M +LA P+ + V K K +L +
Sbjct: 7 TRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKELGLMNC 66
Query: 64 KSAVIPILPNPQQGLSHLAVISPRNLPSPPNFQVPSPYWDPLSARNTNTNPEYRAMNYLD 123
+ P Q +ISP+N P++ + + ++ M+ ++
Sbjct: 67 SRS-----PWSHQD----ELISPKNNRGSSLNPASLPFYANGGRSSRDLTNDFELMDDMN 117
Query: 124 SMIELQKQTQLLSLEDHIEPANTGTGGIGIPSDYFGLDASAANVGGKSGRRFSSLSEFPL 183
S + T L H + G+G GG S F +
Sbjct: 118 S-----RSTDFLG-SVHARSGSCVLDGLG--------------YGGDSDLGFGGVP---- 153
Query: 184 KICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLESEIIELL 243
C YF +G+CK+G +CR+ H D V S + L S +
Sbjct: 154 --CSYFARGFCKNGASCRFVHSD--------------GGADLVGSPSRIELLRSNSVP-- 195
Query: 244 KQKRGHPMSIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIRLISR 303
+ H M+ +SLP G NL + Q + +I
Sbjct: 196 PRLAHHFMTRSSLP---------------------SFSTKGVNLQQNDVQRAAAALMI-- 232
Query: 304 PHGQHAVVLAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDV 363
G L P+ I SA ASRQIYLTFPADS F EEDVS+YF+TFG V+DV
Sbjct: 233 --GDELQKLGRWRPERIDL--SAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDV 288
Query: 364 RIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLER 415
RIP QQ+RMFGFVTF PETVK IL KGNPH+V SRVLVKPYKEK K ++
Sbjct: 289 RIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPDK 340
>AT3G21100.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7399162-7401870 FORWARD LENGTH=602
Length = 602
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 161/506 (31%), Positives = 236/506 (46%), Gaps = 103/506 (20%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKT--DLQ 59
D T I+F KI+ EP+ ASKIIGYLLLQD G+ + +LA P+ + V K K+ L
Sbjct: 5 DPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSALGLS 64
Query: 60 RLAIKSAVIPILP---------------NPQQGLSHL----AVISPRNLPSPPN-----F 95
SA P+ P +P G S + +P +L S PN F
Sbjct: 65 SNGSSSASSPLNPISRPINIHRHSLSHSSPGNGFSRNPLSPSFATPGSLGSNPNMISSPF 124
Query: 96 QVPSPYW--DPLSARNTNTNPEY----RAMNYLDSMIELQKQTQLLSLEDHIEPANTGTG 149
Q S + D +A ++ N ++ + NYL + E + SL+ A+ G
Sbjct: 125 QASSSLFASDGAAAGDSTGNGDFLDEQQLGNYLSFLNESSSKNNDESLDPFGFSADNGDA 184
Query: 150 GIGIPSDYFGLDASAANVGGKSGRRFSSLSEFPLKICHYFNKGYCKHGTNCRYYHGHVLP 209
+ S AS A G SE P G+ G N R+ HG +
Sbjct: 185 HLHKRS----FSASDACFG----------SEEP---------GFGGGGYN-RFLHGGL-- 218
Query: 210 ENFSQMYGNDTNSEDQVFSQGSLAQLESEIIELLKQKR-----GHPMSIASLPMAYYDRY 264
G+D +S S +++ + EI+ + +R ++ PM+Y
Sbjct: 219 -------GDDFDSPGGFGSPDYVSRQQEEIVRMKMAQRQRMAAAQYLAATGSPMSYEKGL 271
Query: 265 KKVL-QADGYLTESQRHGKSGYNLTKLLEQLNGSIRLISRPHGQHAVVLAEDAPKYIREG 323
+L Q + + + + + G+ GY P G+H + +++ G
Sbjct: 272 NFLLHQRNAHRSGAGQFGEEGY--------------WFGSP-GRH------ERDEFMGMG 310
Query: 324 DSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPET 383
D + SAS+QIYLTFPADS+FT+EDVS+YF FG V+DVRIP QQ+RMFGFVTF ET
Sbjct: 311 DKSN--SASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSET 368
Query: 384 VKMILEKGNPHYVRGSRVLVKPYKEKAKTLERKYG-------DRGEHSVYCSPHYVDLDS 436
V++IL +GNPH++ SRVLVKPYKEK + LE++ +RG S SP +D
Sbjct: 369 VRIILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRD 428
Query: 437 ELDS--MPISTGNHRSIRRQLIEEQE 460
DS P N + + R+ E+ +
Sbjct: 429 LFDSHLAPRMFSNTQEMMRRKAEQAD 454
>AT5G12440.3 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 146/261 (55%), Gaps = 38/261 (14%)
Query: 184 KICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLESEIIEL- 242
K C YF++G CK+G +C++ HG P+N M GN ++ + + Q E E++ L
Sbjct: 231 KPCVYFSRGLCKNGESCKFIHGGY-PDN---MDGNGIVADSPRKMENFVRQHE-EMMRLK 285
Query: 243 --LKQKRGHPMSIASLP-MAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIR 299
+Q+R + P + Y R +LQ +QR G + G R
Sbjct: 286 LAYQQQRLASQILGRAPQLPYEKRMDFLLQ-----QHAQRDGGLPF----------GDER 330
Query: 300 LISRPHGQHAVVLAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGC 359
S G+ E + GD Q+ SASRQIYLTFPADSTF +EDV+ YF+ FG
Sbjct: 331 FWSSSPGR-----LERMELAMHLGD--QSNSASRQIYLTFPADSTFKDEDVATYFSLFGT 383
Query: 360 VEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLERKYG- 418
V+DVRIP QQ+RMFGFV+FA PETVK++L +GNPH++ SRVLVKPYKEK K L++K
Sbjct: 384 VQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQ 443
Query: 419 ------DRGEHSVYCSPHYVD 433
+RG +S SP +D
Sbjct: 444 LLQQQIERGNYSPCSSPSGID 464
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDL 58
D T ++ KI+ EP++A KIIGYLLL D G++ + LA P+ + KVK+ L
Sbjct: 5 DATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSLL 61
>AT5G12440.2 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 146/261 (55%), Gaps = 38/261 (14%)
Query: 184 KICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLESEIIEL- 242
K C YF++G CK+G +C++ HG P+N M GN ++ + + Q E E++ L
Sbjct: 231 KPCVYFSRGLCKNGESCKFIHGGY-PDN---MDGNGIVADSPRKMENFVRQHE-EMMRLK 285
Query: 243 --LKQKRGHPMSIASLP-MAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIR 299
+Q+R + P + Y R +LQ +QR G + G R
Sbjct: 286 LAYQQQRLASQILGRAPQLPYEKRMDFLLQ-----QHAQRDGGLPF----------GDER 330
Query: 300 LISRPHGQHAVVLAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGC 359
S G+ E + GD Q+ SASRQIYLTFPADSTF +EDV+ YF+ FG
Sbjct: 331 FWSSSPGR-----LERMELAMHLGD--QSNSASRQIYLTFPADSTFKDEDVATYFSLFGT 383
Query: 360 VEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLERKYG- 418
V+DVRIP QQ+RMFGFV+FA PETVK++L +GNPH++ SRVLVKPYKEK K L++K
Sbjct: 384 VQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQ 443
Query: 419 ------DRGEHSVYCSPHYVD 433
+RG +S SP +D
Sbjct: 444 LLQQQIERGNYSPCSSPSGID 464
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDL 58
D T ++ KI+ EP++A KIIGYLLL D G++ + LA P+ + KVK+ L
Sbjct: 5 DATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSLL 61
>AT5G12440.1 | Symbols: | CCCH-type zinc fingerfamily protein with
RNA-binding domain | chr5:4035891-4038604 REVERSE
LENGTH=650
Length = 650
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 146/261 (55%), Gaps = 38/261 (14%)
Query: 184 KICHYFNKGYCKHGTNCRYYHGHVLPENFSQMYGNDTNSEDQVFSQGSLAQLESEIIEL- 242
K C YF++G CK+G +C++ HG P+N M GN ++ + + Q E E++ L
Sbjct: 231 KPCVYFSRGLCKNGESCKFIHGGY-PDN---MDGNGIVADSPRKMENFVRQHE-EMMRLK 285
Query: 243 --LKQKRGHPMSIASLP-MAYYDRYKKVLQADGYLTESQRHGKSGYNLTKLLEQLNGSIR 299
+Q+R + P + Y R +LQ +QR G + G R
Sbjct: 286 LAYQQQRLASQILGRAPQLPYEKRMDFLLQ-----QHAQRDGGLPF----------GDER 330
Query: 300 LISRPHGQHAVVLAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGC 359
S G+ E + GD Q+ SASRQIYLTFPADSTF +EDV+ YF+ FG
Sbjct: 331 FWSSSPGR-----LERMELAMHLGD--QSNSASRQIYLTFPADSTFKDEDVATYFSLFGT 383
Query: 360 VEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLERKYG- 418
V+DVRIP QQ+RMFGFV+FA PETVK++L +GNPH++ SRVLVKPYKEK K L++K
Sbjct: 384 VQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQ 443
Query: 419 ------DRGEHSVYCSPHYVD 433
+RG +S SP +D
Sbjct: 444 LLQQQIERGNYSPCSSPSGID 464
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDL 58
D T ++ KI+ EP++A KIIGYLLL D G++ + LA P+ + KVK+ L
Sbjct: 5 DATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSLL 61
>AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=406
Length = 406
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 72/88 (81%)
Query: 325 SAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETV 384
SA ASRQIYLTFPADS F EEDVSDYF+TFG V+DVRIP QQ+RMFGFVTF PETV
Sbjct: 147 SATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETV 206
Query: 385 KMILEKGNPHYVRGSRVLVKPYKEKAKT 412
K IL KGNPH+V SRVLVKPYKEK K
Sbjct: 207 KSILAKGNPHFVCHSRVLVKPYKEKGKV 234
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 4 TRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQ 59
TRIV +IQ +P +ASKIIG LLLQD+GE++M +LA P + V K K DL+
Sbjct: 7 TRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLE 62
>AT3G63450.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 72/88 (81%)
Query: 325 SAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETV 384
SA ASRQIYLTFPADS F EEDVSDYF+TFG V+DVRIP QQ+RMFGFVTF PETV
Sbjct: 147 SATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETV 206
Query: 385 KMILEKGNPHYVRGSRVLVKPYKEKAKT 412
K IL KGNPH+V SRVLVKPYKEK K
Sbjct: 207 KSILAKGNPHFVCHSRVLVKPYKEKGKV 234
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQ 59
+ TRIV +IQ +P +ASKIIG LLLQD+GE++M +LA P + V K K DL+
Sbjct: 5 EATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLE 62
>AT3G63450.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23427191-23428864 REVERSE LENGTH=404
Length = 404
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 68/88 (77%), Positives = 72/88 (81%)
Query: 325 SAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETV 384
SA ASRQIYLTFPADS F EEDVSDYF+TFG V+DVRIP QQ+RMFGFVTF PETV
Sbjct: 147 SATACPASRQIYLTFPADSIFREEDVSDYFSTFGPVQDVRIPYQQKRMFGFVTFMYPETV 206
Query: 385 KMILEKGNPHYVRGSRVLVKPYKEKAKT 412
K IL KGNPH+V SRVLVKPYKEK K
Sbjct: 207 KSILAKGNPHFVCHSRVLVKPYKEKGKV 234
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDLQ 59
+ TRIV +IQ +P +ASKIIG LLLQD+GE++M +LA P + V K K DL+
Sbjct: 5 EATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKDLE 62
>AT3G21100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7400426-7401870 FORWARD LENGTH=296
Length = 296
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 85/118 (72%), Gaps = 7/118 (5%)
Query: 330 SASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETVKMILE 389
SAS+QIYLTFPADS+FT+EDVS+YF FG V+DVRIP QQ+RMFGFVTF ETV++IL
Sbjct: 9 SASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVRIILA 68
Query: 390 KGNPHYVRGSRVLVKPYKEKAKTLERKYG-------DRGEHSVYCSPHYVDLDSELDS 440
+GNPH++ SRVLVKPYKEK + LE++ +RG S SP +D DS
Sbjct: 69 RGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRDLFDS 126
>AT1G51520.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19109093 FORWARD LENGTH=513
Length = 513
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 7/129 (5%)
Query: 312 LAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRR 371
E+ Y +G + S S+QIYLTFP++S+FT+EDVS YF FG V+DVRIP QQ+R
Sbjct: 245 FGEECGNYFSQGRHEREDSVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQR 304
Query: 372 MFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLERKYG-------DRGEHS 424
M+GFVTFA ETV+ IL +GNPH++ SRVLVKPYKEK K L+++ +RG +S
Sbjct: 305 MYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELLERGNYS 364
Query: 425 VYCSPHYVD 433
SP D
Sbjct: 365 PSSSPSGKD 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDL 58
D T I+F KI+ FE E+AS++I Y LLQD ++ + ++A PD I K K DL
Sbjct: 5 DPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVDL 61
>AT1G51520.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19106789-19108533 FORWARD LENGTH=414
Length = 414
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 87/129 (67%), Gaps = 7/129 (5%)
Query: 312 LAEDAPKYIREGDSAQNISASRQIYLTFPADSTFTEEDVSDYFNTFGCVEDVRIPCQQRR 371
E+ Y +G + S S+QIYLTFP++S+FT+EDVS YF FG V+DVRIP QQ+R
Sbjct: 245 FGEECGNYFSQGRHEREDSVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQR 304
Query: 372 MFGFVTFADPETVKMILEKGNPHYVRGSRVLVKPYKEKAKTLERKYG-------DRGEHS 424
M+GFVTFA ETV+ IL +GNPH++ SRVLVKPYKEK K L+++ +RG +S
Sbjct: 305 MYGFVTFAKAETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELLERGNYS 364
Query: 425 VYCSPHYVD 433
SP D
Sbjct: 365 PSSSPSGKD 373
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 2 DYTRIVFDKIQKFEPEHASKIIGYLLLQDNGEQKMAKLASCPDQFIGEVAFKVKTDL 58
D T I+F KI+ FE E+AS++I Y LLQD ++ + ++A PD I K K DL
Sbjct: 5 DPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVDL 61
>AT1G51530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:19109854-19112152 FORWARD LENGTH=403
Length = 403
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 344 TFTEEDVSDYFNTFGCVEDVRIPCQQRRMFGFVTFADPETVKMILEKGNPHYVRGSRVLV 403
+FT++ VS YF FG V VRIP Q+ +++GFV+FA+ ETV IL++ NPH + S V V
Sbjct: 185 SFTDQHVSTYFGNFGPVLSVRIPNQKEQVYGFVSFANAETVTTILDQENPHLIGESPVNV 244