Miyakogusa Predicted Gene

Lj2g3v3247910.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3247910.2 tr|Q9FM80|Q9FM80_ARATH Mitochondrial
transcription termination factor family protein OS=Arabidopsis
,42.35,2e-17,seg,NULL,CUFF.39927.2
         (199 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55580.1 | Symbols:  | Mitochondrial transcription terminatio...    94   5e-20

>AT5G55580.1 | Symbols:  | Mitochondrial transcription termination
           factor family protein | chr5:22515601-22517408 FORWARD
           LENGTH=496
          Length = 496

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 88/175 (50%), Gaps = 12/175 (6%)

Query: 32  RRGSKLVVLAAHSNPKILKTNRMSKYGRALSMYXXXXXXXXXXXXXXXXXXXXXXXXXXX 91
           R+    VV  AHSNPKI+   + S+YG+ LS Y                           
Sbjct: 41  RKTRGFVVTYAHSNPKIINPKKKSRYGQTLSPYDSDEDDDDDDDDDDDDWLLNDD----- 95

Query: 92  FAEPADLDVNNKRRKSRTVAERNRER------EKERGLRSFDDGQSNRMPKSERLASFQQ 145
           FAE  + +    +   +T+A+++ ++      E E      D G S      ++  S++ 
Sbjct: 96  FAEVTEYEKKKPKSHKQTIAKKSVKKGIVKPEESETDEDDLDLGISPNATSEKKKESWRL 155

Query: 146 NDSGKFG-RNSKEKKYPRLSEEIVMDVKWLPLLDYLSTFEIKESHFLQMYERHMP 199
           +  GK   R   EK YPRL+EEI +D K +PLLDYLSTF +KESHF+QMYERHMP
Sbjct: 156 DGRGKMSSRKYVEKLYPRLAEEIDIDPKCVPLLDYLSTFGLKESHFVQMYERHMP 210