Miyakogusa Predicted Gene

Lj2g3v3245810.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3245810.1 Non Chatacterized Hit- tr|B9SYB3|B9SYB3_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,46.92,3e-18,seg,NULL,NODE_37230_length_834_cov_169.990402.path2.1
         (294 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14...    62   6e-10
AT2G29060.1 | Symbols:  | GRAS family transcription factor | chr...    60   1e-09
AT3G46600.1 | Symbols:  | GRAS family transcription factor | chr...    54   2e-07
AT2G37650.1 | Symbols:  | GRAS family transcription factor | chr...    52   5e-07

>AT1G07530.1 | Symbols: SCL14, ATGRAS2, GRAS2 | SCARECROW-like 14 |
           chr1:2313828-2316137 REVERSE LENGTH=769
          Length = 769

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 80  ILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYP 124
           +L+YIS +LM+E  D+E KPCM  D L LQAAEKS Y+ LG  YP
Sbjct: 86  VLKYISQVLMEE--DMEEKPCMFHDALALQAAEKSLYEALGEKYP 128



 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 31/44 (70%)

Query: 246 KRGHLMNNFSHVEEERSNKLSAVYSDDSELSEMFDEVLLCKDGK 289
           K+ H  +      EERSNK SAVY ++SELSEMFD++L+C  GK
Sbjct: 303 KKSHWRDEDEDFVEERSNKQSAVYVEESELSEMFDKILVCGPGK 346


>AT2G29060.1 | Symbols:  | GRAS family transcription factor |
           chr2:12481991-12484075 FORWARD LENGTH=694
          Length = 694

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 2/45 (4%)

Query: 80  ILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYP 124
           +L+YIS +LM+E  D+E KPCM  D L LQAAEKS Y+ LG  YP
Sbjct: 60  VLKYISQVLMEE--DMEDKPCMFHDALSLQAAEKSLYEALGEKYP 102


>AT3G46600.1 | Symbols:  | GRAS family transcription factor |
           chr3:17158048-17159799 FORWARD LENGTH=583
          Length = 583

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 36/48 (75%), Gaps = 2/48 (4%)

Query: 79  PILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYPSS 126
           P+ +YI+D+LM+E  DLE + CML+D L LQAAE+SF++VL    P S
Sbjct: 61  PVFKYINDMLMEE--DLEGQSCMLEDSLALQAAERSFFEVLQDQTPIS 106


>AT2G37650.1 | Symbols:  | GRAS family transcription factor |
           chr2:15792623-15794779 FORWARD LENGTH=718
          Length = 718

 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 80  ILRYISDILMDEEDDLERKPCMLQDCLRLQAAEKSFYDVLGRSYPSSPHQ 129
           +L YIS +L   E+D++ K CMLQ+ L L+AAE+S Y+ +G+ YP SP +
Sbjct: 81  VLGYISQML--NEEDMDDKVCMLQESLDLEAAERSLYEAIGKKYPPSPER 128