Miyakogusa Predicted Gene
- Lj2g3v3234600.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3234600.3 Non Chatacterized Hit- tr|F6HZN8|F6HZN8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,45.57,0.0000000000003,RNA-binding domain, RBD,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; RNA recognition motif,CUFF.39940.3
(230 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 327 4e-90
AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 327 5e-90
AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 288 3e-78
AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 288 3e-78
AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 281 2e-76
AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 281 2e-76
AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 281 3e-76
AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 281 3e-76
AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 279 9e-76
AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 279 9e-76
AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 268 3e-72
AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 217 6e-57
AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 183 1e-46
AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 179 1e-45
AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 | ch... 144 4e-35
AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 142 2e-34
AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 139 2e-33
AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 136 1e-32
AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 129 2e-30
AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 111 4e-25
AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 111 4e-25
AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 2e-11
AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 66 2e-11
AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 64 9e-11
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 62 3e-10
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 62 3e-10
AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 62 4e-10
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 61 7e-10
AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 3e-09
AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 4e-09
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 58 5e-09
AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 8e-09
AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 9e-09
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 57 1e-08
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 57 1e-08
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 57 1e-08
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 57 1e-08
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 57 1e-08
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 57 1e-08
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 57 2e-08
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 56 2e-08
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 56 2e-08
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 2e-08
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 56 2e-08
AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 56 3e-08
AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 3e-08
AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 3e-08
AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protei... 55 3e-08
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 55 3e-08
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 5e-08
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 55 5e-08
AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 6e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 54 8e-08
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 8e-08
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 54 8e-08
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 54 8e-08
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 54 1e-07
AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding | ch... 54 1e-07
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 54 1e-07
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 54 1e-07
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 1e-07
AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |... 54 1e-07
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 53 1e-07
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 53 2e-07
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 53 2e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 52 2e-07
AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 3e-07
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 52 3e-07
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 52 4e-07
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 52 4e-07
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 4e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 52 5e-07
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 5e-07
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 51 5e-07
AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 6e-07
AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 6e-07
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 6e-07
AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 6e-07
AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 8e-07
AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 9e-07
AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 9e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 50 1e-06
AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 49 2e-06
AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing fact... 49 2e-06
AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, an... 49 2e-06
AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold, circa... 49 2e-06
AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 2e-06
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 49 4e-06
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 4e-06
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 48 5e-06
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 48 5e-06
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 6e-06
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 48 6e-06
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 6e-06
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 47 7e-06
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 47 9e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 47 9e-06
>AT3G07810.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495052 FORWARD LENGTH=494
Length = 494
Score = 327 bits (838), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 166/228 (72%), Positives = 187/228 (82%), Gaps = 5/228 (2%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNR-QSGGV 59
++DR TGRARGFGFVVFADPAVAE VI +KH IDGR VEAKKAVPRDDQN +NR S +
Sbjct: 38 LKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSI 97
Query: 60 HGSPG-TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSPG GRT+KIFVGGLPS++TESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYD
Sbjct: 98 QGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYD 157
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQ 178
SEEAV++VL KTFHELNGKMVEVKRAVPKELSPGP RSPL Y+YG+NR ++ LN YAQ
Sbjct: 158 SEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQ 217
Query: 179 GFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAI 226
GFN VGG G+RMDGRF +P+ + R G + SGYGM VN D +
Sbjct: 218 GFNPAAVGGYGLRMDGRF--SPVGAGRSGFANYS-SGYGMNVNFDQGL 262
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K YF FG + + V++ D T R RGFGF+ + ++ AV ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVIT 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G++VE K+AVP++
Sbjct: 66 EKHNIDGRLVEAKKAVPRD 84
>AT3G07810.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2492875-2495102 FORWARD LENGTH=495
Length = 495
Score = 327 bits (837), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 166/228 (72%), Positives = 187/228 (82%), Gaps = 5/228 (2%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNR-QSGGV 59
++DR TGRARGFGFVVFADPAVAE VI +KH IDGR VEAKKAVPRDDQN +NR S +
Sbjct: 38 LKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSI 97
Query: 60 HGSPG-TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
GSPG GRT+KIFVGGLPS++TESDFK YF+QFGT TDVVVMYDHNTQRPRGFGFITYD
Sbjct: 98 QGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYD 157
Query: 119 SEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQ 178
SEEAV++VL KTFHELNGKMVEVKRAVPKELSPGP RSPL Y+YG+NR ++ LN YAQ
Sbjct: 158 SEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQ 217
Query: 179 GFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAI 226
GFN VGG G+RMDGRF +P+ + R G + SGYGM VN D +
Sbjct: 218 GFNPAAVGGYGLRMDGRF--SPVGAGRSGFANYS-SGYGMNVNFDQGL 262
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E K YF FG + + V++ D T R RGFGF+ + ++ AV ++
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVIT 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G++VE K+AVP++
Sbjct: 66 EKHNIDGRLVEAKKAVPRD 84
>AT4G26650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445552-13447592 FORWARD LENGTH=455
Length = 455
Score = 288 bits (736), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/241 (66%), Positives = 181/241 (75%), Gaps = 21/241 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDR TGRARGFGF+VFADP+VAERVI+DKHIIDGRTVEAKKAVPRDDQ L R + +H
Sbjct: 47 MRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMH 106
Query: 61 -------GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
G+ G RTKKIFVGGLPS+ITE++FKNYFDQFGTI DVVVMYDHNTQRPRGFG
Sbjct: 107 LISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 166
Query: 114 FITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLIG-SYNYGL--NRA 169
FIT+DSEE+VD VL KTFHELNGKMVEVKRAVPKELS P RSPLIG NYG+ NR+
Sbjct: 167 FITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRS 226
Query: 170 S--SYLNSYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIA 227
S SY NS+ G+N N +G GRF +P+ S R + FG G +NL+S
Sbjct: 227 SANSYFNSFPPGYNNNNLGSA-----GRF--SPIGSGRNAFSSFGL-GLNQELNLNSNFD 278
Query: 228 G 228
G
Sbjct: 279 G 279
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF ++G + + V+M D T R RGFGFI + +RV+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 76 K-HIIDGRTVEAKKAVPRD 93
>AT4G26650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:13445265-13447592 FORWARD LENGTH=452
Length = 452
Score = 288 bits (736), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 160/241 (66%), Positives = 181/241 (75%), Gaps = 21/241 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDR TGRARGFGF+VFADP+VAERVI+DKHIIDGRTVEAKKAVPRDDQ L R + +H
Sbjct: 44 MRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMH 103
Query: 61 -------GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
G+ G RTKKIFVGGLPS+ITE++FKNYFDQFGTI DVVVMYDHNTQRPRGFG
Sbjct: 104 LISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFG 163
Query: 114 FITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLIG-SYNYGL--NRA 169
FIT+DSEE+VD VL KTFHELNGKMVEVKRAVPKELS P RSPLIG NYG+ NR+
Sbjct: 164 FITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRS 223
Query: 170 S--SYLNSYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLDSAIA 227
S SY NS+ G+N N +G GRF +P+ S R + FG G +NL+S
Sbjct: 224 SANSYFNSFPPGYNNNNLGSA-----GRF--SPIGSGRNAFSSFGL-GLNQELNLNSNFD 275
Query: 228 G 228
G
Sbjct: 276 G 276
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E + YF ++G + + V+M D T R RGFGFI + +RV+
Sbjct: 13 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 72
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++G+ VE K+AVP++
Sbjct: 73 K-HIIDGRTVEAKKAVPRD 90
>AT5G55550.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 180/244 (73%), Gaps = 32/244 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDRATGRARGFGF+VFADP V+ERVI+DKHIIDGRTVEAKKAVPRDDQ L R + +H
Sbjct: 38 MRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIH 97
Query: 61 -GSP---GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
SP G GRTKKIFVGGLPS+ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFIT
Sbjct: 98 LMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLIGSYNY--GLNR--ASS 171
+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL NY G NR A+S
Sbjct: 158 FDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANS 217
Query: 172 YLNSYAQG---FN-MNPVG-----------------GLGVRMDGRFNLNPLTSSRGGLTP 210
Y N++A G +N + PVG GLG+ D NLNP S G +
Sbjct: 218 YFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNP--SCDGTSST 275
Query: 211 FGFS 214
FG++
Sbjct: 276 FGYN 279
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E ++YF +G + + V+M D T R RGFGFI + +RV+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 130 TFHELNGKMVEVKRAVPKE--------LSPGPIRSPLIG 160
H ++G+ VE K+AVP++ SP + SP+ G
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHG 104
>AT5G55550.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502135-22503658 REVERSE LENGTH=460
Length = 460
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 180/244 (73%), Gaps = 32/244 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDRATGRARGFGF+VFADP V+ERVI+DKHIIDGRTVEAKKAVPRDDQ L R + +H
Sbjct: 38 MRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIH 97
Query: 61 -GSP---GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
SP G GRTKKIFVGGLPS+ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFIT
Sbjct: 98 LMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLIGSYNY--GLNR--ASS 171
+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL NY G NR A+S
Sbjct: 158 FDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANS 217
Query: 172 YLNSYAQG---FN-MNPVG-----------------GLGVRMDGRFNLNPLTSSRGGLTP 210
Y N++A G +N + PVG GLG+ D NLNP S G +
Sbjct: 218 YFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNP--SCDGTSST 275
Query: 211 FGFS 214
FG++
Sbjct: 276 FGYN 279
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E ++YF +G + + V+M D T R RGFGFI + +RV+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 130 TFHELNGKMVEVKRAVPKE--------LSPGPIRSPLIG 160
H ++G+ VE K+AVP++ SP + SP+ G
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHG 104
>AT5G55550.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 180/244 (73%), Gaps = 32/244 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDRATGRARGFGF+VFADP V+ERVI+DKHIIDGRTVEAKKAVPRDDQ L R + +H
Sbjct: 38 MRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIH 97
Query: 61 -GSP---GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
SP G GRTKKIFVGGLPS+ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFIT
Sbjct: 98 LMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLIGSYNY--GLNR--ASS 171
+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL NY G NR A+S
Sbjct: 158 FDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANS 217
Query: 172 YLNSYAQG---FN-MNPVG-----------------GLGVRMDGRFNLNPLTSSRGGLTP 210
Y N++A G +N + PVG GLG+ D NLNP S G +
Sbjct: 218 YFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNP--SCDGTSST 275
Query: 211 FGFS 214
FG++
Sbjct: 276 FGYN 279
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E ++YF +G + + V+M D T R RGFGFI + +RV+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 130 TFHELNGKMVEVKRAVPKE--------LSPGPIRSPLIG 160
H ++G+ VE K+AVP++ SP + SP+ G
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHG 104
>AT5G55550.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:22502077-22503658 REVERSE LENGTH=448
Length = 448
Score = 281 bits (719), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/244 (65%), Positives = 180/244 (73%), Gaps = 32/244 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDRATGRARGFGF+VFADP V+ERVI+DKHIIDGRTVEAKKAVPRDDQ L R + +H
Sbjct: 38 MRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIH 97
Query: 61 -GSP---GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
SP G GRTKKIFVGGLPS+ITE +FKNYFDQFGTI DVVVMYDHNTQRPRGFGFIT
Sbjct: 98 LMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFIT 157
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP-GPIRSPLIGSYNY--GLNR--ASS 171
+DS++AVDRVL KTFHELNGK+VEVKRAVPKE+SP IRSPL NY G NR A+S
Sbjct: 158 FDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANS 217
Query: 172 YLNSYAQG---FN-MNPVG-----------------GLGVRMDGRFNLNPLTSSRGGLTP 210
Y N++A G +N + PVG GLG+ D NLNP S G +
Sbjct: 218 YFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFGLGLNHDLSLNLNP--SCDGTSST 275
Query: 211 FGFS 214
FG++
Sbjct: 276 FGYN 279
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E ++YF +G + + V+M D T R RGFGFI + +RV+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 130 TFHELNGKMVEVKRAVPKE--------LSPGPIRSPLIG 160
H ++G+ VE K+AVP++ SP + SP+ G
Sbjct: 67 K-HIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHG 104
>AT5G47620.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 279 bits (714), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 174/223 (78%), Gaps = 4/223 (1%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DRATGRARGFGFVVFADP VAERV++ KHIIDG+ VEAKKAVPRDD N+ + +
Sbjct: 38 MKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQ 97
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPG +KKIFVGGL S++TE++FK YF QFG ITDVVVMYDH TQRPRGFGFI+YDSE
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGF 180
EAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ + ++G +R SS LN Y QGF
Sbjct: 158 EAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM-NVNSFGTSRISSLLNEYTQGF 216
Query: 181 NMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLD 223
+ +P+ G GV+ + R+ +P +RGG +PFG GYG+ +N +
Sbjct: 217 SPSPISGYGVKPEVRY--SPAVGNRGGFSPFGH-GYGIELNFE 256
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
+ K+F+GG+ +E ++YF FG + + V+M D T R RGFGF+ + +RV
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 127 LFKTFHELNGKMVEVKRAVPKE 148
+ H ++GK+VE K+AVP++
Sbjct: 64 VLLK-HIIDGKIVEAKKAVPRD 84
>AT5G47620.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=431
Length = 431
Score = 279 bits (714), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 139/223 (62%), Positives = 174/223 (78%), Gaps = 4/223 (1%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DRATGRARGFGFVVFADP VAERV++ KHIIDG+ VEAKKAVPRDD N+ + +
Sbjct: 38 MKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQ 97
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
GSPG +KKIFVGGL S++TE++FK YF QFG ITDVVVMYDH TQRPRGFGFI+YDSE
Sbjct: 98 GSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGF 180
EAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ + ++G +R SS LN Y QGF
Sbjct: 158 EAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM-NVNSFGTSRISSLLNEYTQGF 216
Query: 181 NMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGMGVNLD 223
+ +P+ G GV+ + R+ +P +RGG +PFG GYG+ +N +
Sbjct: 217 SPSPISGYGVKPEVRY--SPAVGNRGGFSPFGH-GYGIELNFE 256
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
+ K+F+GG+ +E ++YF FG + + V+M D T R RGFGF+ + +RV
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 127 LFKTFHELNGKMVEVKRAVPKE 148
+ H ++GK+VE K+AVP++
Sbjct: 64 VLLK-HIIDGKIVEAKKAVPRD 84
>AT5G47620.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304278 REVERSE LENGTH=453
Length = 453
Score = 268 bits (684), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/245 (56%), Positives = 174/245 (71%), Gaps = 26/245 (10%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGR----------------------TV 38
M+DRATGRARGFGFVVFADP VAERV++ KHIIDG+ V
Sbjct: 38 MKDRATGRARGFGFVVFADPNVAERVVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVV 97
Query: 39 EAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDV 98
EAKKAVPRDD N+ + + GSPG +KKIFVGGL S++TE++FK YF QFG ITDV
Sbjct: 98 EAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDV 157
Query: 99 VVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPL 158
VVMYDH TQRPRGFGFI+YDSEEAVD+VL KTFHELNGKMVEVK AVPK+++ +R+ +
Sbjct: 158 VVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQM 217
Query: 159 IGSYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYGM 218
++G +R SS LN Y QGF+ +P+ G GV+ + R+ +P +RGG +PFG GYG+
Sbjct: 218 -NVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRY--SPAVGNRGGFSPFGH-GYGI 273
Query: 219 GVNLD 223
+N +
Sbjct: 274 ELNFE 278
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 23/104 (22%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
+ K+F+GG+ +E ++YF FG + + V+M D T R RGFGF+ + +RV
Sbjct: 4 ESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERV 63
Query: 127 LFKTFHELNGKM----------------------VEVKRAVPKE 148
+ H ++GK+ VE K+AVP++
Sbjct: 64 VLLK-HIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRD 106
>AT5G47620.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:19302548-19304106 REVERSE LENGTH=371
Length = 371
Score = 217 bits (552), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 109/186 (58%), Positives = 140/186 (75%), Gaps = 4/186 (2%)
Query: 38 VEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITD 97
VEAKKAVPRDD N+ + + GSPG +KKIFVGGL S++TE++FK YF QFG ITD
Sbjct: 15 VEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITD 74
Query: 98 VVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSP 157
VVVMYDH TQRPRGFGFI+YDSEEAVD+VL KTFHELNGKMVEVK AVPK+++ +R+
Sbjct: 75 VVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQ 134
Query: 158 LIGSYNYGLNRASSYLNSYAQGFNMNPVGGLGVRMDGRFNLNPLTSSRGGLTPFGFSGYG 217
+ ++G +R SS LN Y QGF+ +P+ G GV+ + R+ +P +RGG +PFG GYG
Sbjct: 135 M-NVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRY--SPAVGNRGGFSPFGH-GYG 190
Query: 218 MGVNLD 223
+ +N +
Sbjct: 191 IELNFE 196
>AT4G14300.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8231179-8232785 FORWARD LENGTH=411
Length = 411
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 120/156 (76%), Gaps = 6/156 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRD+ TGR RGFGFV+F+DP+V +RV+ +KH ID R V+ K+A+ R++Q R +G ++
Sbjct: 38 MRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTREVDVKRAMSREEQQVSGR-TGNLN 96
Query: 61 GSPGTG-----RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
S +G +TKKIFVGGLP T+T+ +F+ YF+ +G +TDV +MYD T RPRGFGF+
Sbjct: 97 TSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFV 156
Query: 116 TYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP 151
++DSE+AVD VL KTFH+L+GK VEVKRA+PK+ +P
Sbjct: 157 SFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGG+ E + +F +G ++ +VM D T RPRGFGF+ + +DRVL +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVL-Q 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++ + V+VKRA+ +E
Sbjct: 66 EKHSIDTREVDVKRAMSRE 84
>AT2G33410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14156085-14157435 FORWARD LENGTH=404
Length = 404
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 116/156 (74%), Gaps = 6/156 (3%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MR++ATGR RGFGFV F+DPAV +RV+ DKH ID R V+ K+A+ R++Q+ R SG +
Sbjct: 38 MREKATGRPRGFGFVAFSDPAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGR-SGTFN 96
Query: 61 GSP-----GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
S RTKKIFVGGLP +T +F+ YF+ +G ++D V+M D TQRPRGFGF+
Sbjct: 97 ASRNFDSGANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFV 156
Query: 116 TYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSP 151
++DSE++VD VL KTFH+LNGK VEVKRA+PK+ +P
Sbjct: 157 SFDSEDSVDLVLHKTFHDLNGKQVEVKRALPKDANP 192
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+F+GG+ E+ + YF FG + V VM + T RPRGFGF+ + +DRVL +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVL-Q 65
Query: 130 TFHELNGKMVEVKRAVPKE 148
H ++ + V+VKRA+ +E
Sbjct: 66 DKHHIDNRDVDVKRAMSRE 84
>AT1G58470.1 | Symbols: ATRBP1, RBP1 | RNA-binding protein 1 |
chr1:21727374-21728539 FORWARD LENGTH=360
Length = 360
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 105/161 (65%), Gaps = 14/161 (8%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDD-----------QN 50
+++ TG+ RGFGFV FA+ + + D H I G+ V+ +KA+ + + +
Sbjct: 39 KEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLER 98
Query: 51 TLNRQSGGVHGSPGTG---RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQ 107
+ + +GG+ G RTKKIFVGGL S TE +FK+YF++FG TDVVVM+D T
Sbjct: 99 KVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTN 158
Query: 108 RPRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKE 148
RPRGFGF+TYDSE++V+ V+ FHEL+ K VEVKRA+PKE
Sbjct: 159 RPRGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPKE 199
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGG+ +E K YF ++G + + VV + T +PRGFGF+ + ++ V + L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 130 TFHELNGKMVEVKRAVPK-ELSPGPI 154
T H + GK V+V++A+ K EL P
Sbjct: 67 T-HFILGKPVDVRKAIRKHELYQQPF 91
>AT1G17640.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:6067394-6069098 REVERSE LENGTH=369
Length = 369
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/148 (48%), Positives = 97/148 (65%), Gaps = 10/148 (6%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M DR TG RGFGFV FAD AVAE+V+ + H+ID R V+ K+ +PR D++T +
Sbjct: 98 MTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVDLKRTLPRGDKDTDIK------ 151
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+T+KIFVGGLP + E + KNYF +G I + +MYDH+T R RGFGF+T+ +E
Sbjct: 152 ---AVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 121 EAVDRVLFK-TFHELNGKMVEVKRAVPK 147
++VDR+ HEL K VE+KRA PK
Sbjct: 209 DSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGG+ T F NYF +FG + D V+M D T PRGFGF+T+ ++ AV + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTF-ADSAVAEKVLE 125
Query: 130 TFHELNGKMVEVKRAVPK 147
H ++ + V++KR +P+
Sbjct: 126 EDHVIDDRKVDLKRTLPR 143
>AT3G13224.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256621 FORWARD LENGTH=358
Length = 358
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/176 (43%), Positives = 111/176 (63%), Gaps = 15/176 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDR TG+ RGFGF+ FADP+V ++VI D H+I+G+ VE K+ +P+ QS +
Sbjct: 51 MRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK---GAGGNQSKDI- 106
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+TKKIFVGG+PST+TE + K++F ++G + + V+ DH T R RGFGF+ +DSE
Sbjct: 107 ------KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSE 160
Query: 121 EAVDRVLFK-TFHELNGKMVEVKRAVPKE-LSPGPIRSPLIGSYNYGLNRASSYLN 174
E VD +L K ++ VE+K+A PK+ L+ P P GS+ G + SY +
Sbjct: 161 EVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSP---PSYGSHPRGRSSNDSYAS 213
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
KIF+GGL T + F +F ++G ITD V+M D +T +PRGFGFIT+ VD+V+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 130 TFHELNGKMVEVKRAVPK 147
T H +NGK VE+KR +PK
Sbjct: 80 T-HVINGKQVEIKRTIPK 96
>AT5G40490.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:16225483-16227423 FORWARD LENGTH=423
Length = 423
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 111/171 (64%), Gaps = 18/171 (10%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR TG+ RGFGFV +AD +V ++VI D HII G+ VE K+ +PR ++ +
Sbjct: 74 MKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDF------ 127
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+TKKIFVGG+PS++ + +FK +F QFG + + +M DH+T R RGFGF+TY+SE
Sbjct: 128 ------KTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESE 181
Query: 121 EAVDRVLFKTFH-ELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRAS 170
+ VD +L K EL+G VE+K+A PK+ P + +P S +G +R++
Sbjct: 182 DMVDHLLAKGNRIELSGTQVEIKKAEPKK--PNSVTTP---SKRFGDSRSN 227
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 19 DPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPS 78
DP E VI D+ I D + E + DD + SGG G KIFVGGL
Sbjct: 2 DPYGTETVIEDE-IHDPKPSEDIE----DDDDKSQPHSGG-----GVDSAGKIFVGGLAR 51
Query: 79 TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTFHELNGKM 138
T ++F +F ++G ITD V+M D T +PRGFGF+TY VD+V+ + H + GK
Sbjct: 52 ETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQ 110
Query: 139 VEVKRAVPK 147
VE+KR +P+
Sbjct: 111 VEIKRTIPR 119
>AT3G13224.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4254848-4256014 FORWARD LENGTH=231
Length = 231
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/130 (47%), Positives = 88/130 (67%), Gaps = 12/130 (9%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
MRDR TG+ RGFGF+ FADP+V ++VI D H+I+G+ VE K+ +P+ G
Sbjct: 51 MRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPK-----------GAG 99
Query: 61 GSPGTG-RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G+ +TKKIFVGG+PST+TE + K++F ++G + + V+ DH T R RGFGF+ +DS
Sbjct: 100 GNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDS 159
Query: 120 EEAVDRVLFK 129
EE VD +L K
Sbjct: 160 EEVVDELLSK 169
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 7/95 (7%)
Query: 53 NRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGF 112
N QSG SPG KIF+GGL T + F +F ++G ITD V+M D +T +PRGF
Sbjct: 9 NFQSGD-GASPG-----KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGF 62
Query: 113 GFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPK 147
GFIT+ VD+V+ T H +NGK VE+KR +PK
Sbjct: 63 GFITFADPSVVDKVIEDT-HVINGKQVEIKRTIPK 96
>AT4G36960.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 96/158 (60%), Gaps = 13/158 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR+TGR+RGFG+V FA A+ + +H + R +E K A P+++ +
Sbjct: 35 MKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAK------ 88
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +PS+++ESDF+++F+++G ITD+ + D+N+++ RG GFIT+ S
Sbjct: 89 ------KVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSA 142
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPL 158
++V+ ++ T H+L G V V RA PKE P P+
Sbjct: 143 DSVEDLMEDT-HDLGGTTVAVDRATPKEDDHPPRPPPV 179
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P I K+Y +FG + D +VM D +T R RGFG++T+ S E L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 129 KTFHELNGKMVEVKRAVPKE 148
K H L +++EVK A PKE
Sbjct: 62 KGEHFLGNRILEVKVATPKE 81
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 61 GSPGT-GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G P T G KIFVG LP + D ++YF +FG I D + D RGFGF+T+
Sbjct: 231 GEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 290
Query: 120 EEAVDRVLFKTFHELNGKMVEVKRAVP 146
DRV ++ HE+ G+ V + A P
Sbjct: 291 NGVADRVARRS-HEICGQEVAIDSATP 316
>AT4G36960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:17427349-17429589 FORWARD LENGTH=379
Length = 379
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 96/158 (60%), Gaps = 13/158 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR+TGR+RGFG+V FA A+ + +H + R +E K A P+++ +
Sbjct: 35 MKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRILEVKVATPKEEMRQPAK------ 88
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +IFV +PS+++ESDF+++F+++G ITD+ + D+N+++ RG GFIT+ S
Sbjct: 89 ------KVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSA 142
Query: 121 EAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPL 158
++V+ ++ T H+L G V V RA PKE P P+
Sbjct: 143 DSVEDLMEDT-HDLGGTTVAVDRATPKEDDHPPRPPPV 179
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 69 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
+K+ V G+P I K+Y +FG + D +VM D +T R RGFG++T+ S E L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 129 KTFHELNGKMVEVKRAVPKE 148
K H L +++EVK A PKE
Sbjct: 62 KGEHFLGNRILEVKVATPKE 81
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 61 GSPGT-GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G P T G KIFVG LP + D ++YF +FG I D + D RGFGF+T+
Sbjct: 231 GEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 290
Query: 120 EEAVDRVLFKTFHELNGKMVEVKRAVP 146
DRV ++ HE+ G+ V + A P
Sbjct: 291 NGVADRVARRS-HEICGQEVAIDSATP 316
>AT1G60650.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+IFVGGL +TE ++ FD++G IT+ +M +T RPRGFGFIT+ D + K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-K 71
Query: 130 TFH--ELNGKMVEVKRAVPK 147
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr1:22340089-22342148 FORWARD LENGTH=292
Length = 292
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+IFVGGL +TE ++ FD++G IT+ +M +T RPRGFGFIT+ D + K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-K 71
Query: 130 TFH--ELNGKMVEVKRAVPK 147
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
>AT5G04280.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein with retrovirus zinc finger-like domain |
chr5:1192461-1195413 FORWARD LENGTH=310
Length = 310
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+IFVGGL +T+ D + F +FG I D +M + +T R RGFGFIT+ A+D + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESI-R 66
Query: 130 TFH--ELNGKMVEVKRAVPK 147
H + +++ V RA PK
Sbjct: 67 EMHGRDFGDRVISVNRAEPK 86
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+FVGGL +S K F FG +T+ V+ D T R RGFGF+++ E++ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 128 FKTF-HELNGKMVEVKRAVPKELSP 151
+ ELNG+ + V A + +P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+FVGGL +S K F FG +T+ V+ D T R RGFGF+++ E++ + +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 128 FKTF-HELNGKMVEVKRAVPKELSP 151
+ ELNG+ + V A + +P
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAP 118
>AT2G46780.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:19229516-19231043 FORWARD LENGTH=336
Length = 336
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 46/95 (48%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
+ KIFVGGL + YF+QFG I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 127 LFKTFHELNGKMVEVKRAVPKELSPGPIRSPLIGS 161
++G+ A P P SP G+
Sbjct: 80 CQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGT 114
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 64 GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEA 122
+G +++VG LP TIT S+ F + GT+ DV ++YD T R RGFGF+T S EEA
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 123 VDRVLFKTFHELNGKMVEV 141
+ + ++ G+ V+V
Sbjct: 171 KEAMQMFNSSQIGGRTVKV 189
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 3 DRATGRARGFGFVVFADPAVAERV--IVDKHIIDGRTVEAK-KAVPRDDQNTLNRQSGGV 59
D+ T R+RGFGFV A+ + + I GRTV+ VPR +N + R
Sbjct: 150 DKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRD 209
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITYD 118
+ K++ G L +T K+ F DQ G + V+Y+ NT R RGFGFI+++
Sbjct: 210 NNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVL-GAKVIYERNTGRSRGFGFISFE 268
Query: 119 SEEAVDRVLFKTFHELNGKMVE 140
S E V L +NG VE
Sbjct: 269 SAENVQSALAT----MNGVEVE 286
>AT1G33470.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=244
Length = 244
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 41/171 (23%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + +NYF+QFG I + VV+ D ++ R +G+GF+T+ EA +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 130 TFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRA--SSYLNSYAQGFNMNPVGG 187
++G+ A +G+ R+ SS ++ + VGG
Sbjct: 68 PAPVIDGRRANCNLAA------------------FGVQRSKPSSPIHGH--------VGG 101
Query: 188 LGVRMDGRFNLN----------PLTSSRGGL---TPFGFSGYGMGVNLDSA 225
G+++ F + PL S L PFGFS Y M N ++
Sbjct: 102 RGMKVTSPFKTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTS 152
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKH-IIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
+ D+++GR++G+GFV F DP A++ VD +IDGR A + ++ S +
Sbjct: 39 ITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRANCNLAAFGVQR---SKPSSPI 95
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNT-QRPRGFGFITYD 118
HG G GR K+ S FK +F T + + H T FGF +Y
Sbjct: 96 HGHVG-GRGMKV----------TSPFKTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSYS 144
>AT1G33470.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:12144632-12146040 FORWARD LENGTH=245
Length = 245
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 41/170 (24%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + +NYF+QFG I + VV+ D ++ R +G+GF+T+ EA +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 130 TFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRA--SSYLNSYAQGFNMNPVGG 187
++G+ A +G+ R+ SS ++ + VGG
Sbjct: 68 PAPVIDGRRANCNLAA------------------FGVQRSKPSSPIHGH--------VGG 101
Query: 188 LGVRMDGRFNLN----------PLTSSRGGL---TPFGFSGYGMGVNLDS 224
G+++ F + PL S L PFGFS Y M N +
Sbjct: 102 RGMKVTSPFKTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPT 151
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKH-IIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
+ D+++GR++G+GFV F DP A++ VD +IDGR A + ++ S +
Sbjct: 39 ITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPVIDGRRANCNLAAFGVQR---SKPSSPI 95
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNT-QRPRGFGFITYD 118
HG G GR K+ S FK +F T + + H T FGF +Y
Sbjct: 96 HGHVG-GRGMKV----------TSPFKTHFGTAATAIPSPLPFSHYTLPYTNPFGFSSYS 144
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 5/101 (4%)
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
G P K+FVG LP + F+Q GT+ V+Y+ +T + RGFGF+T +
Sbjct: 105 GFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTV 164
Query: 121 EAVDRVL--FKTFHELNGKMVEVKRAVPKELSPGPIRSPLI 159
E ++ + F +F E+NG+ + V RA P+ P R P +
Sbjct: 165 EEAEKAVEKFNSF-EVNGRRLTVNRAAPR--GSRPERQPRV 202
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R T ++RGFGFV + AE+ + + ++GR + +A PR + RQ
Sbjct: 147 NRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRP--ERQPRVYD 204
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
+ +I+VG LP + + F + G + D V+ D T R RGFGF+ +E
Sbjct: 205 AA------FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
Query: 121 EAVD 124
V+
Sbjct: 259 NEVN 262
>AT5G53720.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21806622-21807012 FORWARD LENGTH=100
Length = 100
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
R KI+V GLP +YF++FG I V+ D TQR +GFGF+T+ E+ R
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 127 LFKTFHELNGKMVEVKRA 144
H ++G+ V K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
>AT3G46020.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:16912511-16913250 REVERSE LENGTH=102
Length = 102
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ ++FV L + T+ + F FG I + ++ D TQRP+GFGFIT+DSE+ + L
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 128 FKTFHELNGKMVE 140
L+GK+V+
Sbjct: 66 ----KSLDGKIVD 74
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
+ F+GGL T ++ ++ F+++G + + V+ D + R RGFGFIT+D ++A+D +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 130 -TFHELNGKMVEVKRAVPKELSPG 152
+L+G+ + V +A P + G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAG 91
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + D + F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 129 KTFHELNGKMVEVKRAVPK 147
EL+G+++ V A +
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 16/146 (10%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKK----AVPRDDQNTLNRQS 56
MRD G++R FGFV F +P A R + ++G+ + K+ + + L
Sbjct: 257 MRD-GDGKSRCFGFVNFENPEDAARAV---EALNGKKFDDKEWYVGKAQKKSERELELSR 312
Query: 57 GGVHGSPGTGRT---KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
GS G ++V L T+T+ + F +FGTIT VM D + +G G
Sbjct: 313 RYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS-KGSG 371
Query: 114 FITYDSEEAVDRVLFKTFHELNGKMV 139
F+ + + RVL +E+NGKMV
Sbjct: 372 FVAFSAASEASRVL----NEMNGKMV 393
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R T ++RGFGFV + AE + +++ ++GR + KA PR + ++ V+
Sbjct: 184 NRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR---GSRPERAPRVY 240
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY-DS 119
P +++VG LP + + F + G + + V+YD T R RGFGF+T D
Sbjct: 241 -EPAF----RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDV 295
Query: 120 EEAVDRVLFKTFHELNGKMVEVKRA 144
+E + + L G+ + V A
Sbjct: 296 DELNEAISALDGQNLEGRAIRVNVA 320
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 63 PGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 122
P K+FVG L + F+Q GT+ V+Y+ T + RGFGF+T S +
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDE 203
Query: 123 VDRVLFK-TFHELNGKMVEVKRAVPKELSPGPIRSPLI 159
+ + K ++LNG+++ V +A P+ P R+P +
Sbjct: 204 AETAVEKFNRYDLNGRLLTVNKAAPR--GSRPERAPRV 239
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 16/149 (10%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAK-----KAVPRDDQNTLNRQ 55
MRD G+++GFGFV F + A R + ++G+T + K KA + ++ T +Q
Sbjct: 256 MRD-GEGKSKGFGFVNFENSDDAARAV---DALNGKTFDDKEWFVGKAQKKSERETELKQ 311
Query: 56 --SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
+ + + ++V L ++T+ + +F FGTIT VM D + RG G
Sbjct: 312 KFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVS-RGSG 370
Query: 114 FITYDSEEAVDRVLFKTFHELNGKMVEVK 142
F+ + + E R + E+NGKM+ K
Sbjct: 371 FVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
T ++VG L +T+T+S F Q G + V V D T+R G+G++ Y + + R L
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 128 FK-TFHELNGKMVEVKRAV 145
+ F LNG+ + V +V
Sbjct: 104 NELNFMALNGRAIRVMYSV 122
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHI--IDGRTVEAKKAVPRDDQNTLNRQSGGV 59
RD T R+ G+G+V +A P A R + + + ++GR + +V RD R+SG
Sbjct: 78 RDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSV-RDPSL---RKSG-- 131
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
IF+ L +I F FG I V D + Q +G+GF+ YD+
Sbjct: 132 --------VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDT 182
Query: 120 EEAVDRVLFKTFHELNGKMVEVKR 143
+EA + K LNG ++ K+
Sbjct: 183 DEAAQGAIDK----LNGMLLNDKQ 202
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 16/149 (10%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAK-----KAVPRDDQNTLNRQ 55
MRD G+++GFGFV F + A R + ++G+T + K KA + ++ T +Q
Sbjct: 256 MRD-GEGKSKGFGFVNFENSDDAARAV---DALNGKTFDDKEWFVGKAQKKSERETELKQ 311
Query: 56 --SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
+ + + ++V L ++T+ + +F FGTIT VM D + RG G
Sbjct: 312 KFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVS-RGSG 370
Query: 114 FITYDSEEAVDRVLFKTFHELNGKMVEVK 142
F+ + + E R + E+NGKM+ K
Sbjct: 371 FVAFSTPEEATRAI----TEMNGKMIVTK 395
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
T ++VG L +T+T+S F Q G + V V D T+R G+G++ Y + + R L
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 128 FK-TFHELNGKMVEVKRAV 145
+ F LNG+ + V +V
Sbjct: 104 NELNFMALNGRAIRVMYSV 122
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHI--IDGRTVEAKKAVPRDDQNTLNRQSGGV 59
RD T R+ G+G+V +A P A R + + + ++GR + +V RD R+SG
Sbjct: 78 RDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSV-RDPSL---RKSG-- 131
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
IF+ L +I F FG I V D + Q +G+GF+ YD+
Sbjct: 132 --------VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDT 182
Query: 120 EEAVDRVLFKTFHELNGKMVEVKR 143
+EA + K LNG ++ K+
Sbjct: 183 DEAAQGAIDK----LNGMLLNDKQ 202
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEA----KKAVPRDDQNTLNR 54
M D+ +GR+R FGF A V+ ++ + ++GR ++ K D + L
Sbjct: 108 MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS 167
Query: 55 QSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
+ SP K++VG L T+T+ +N F + G + V T + GFGF
Sbjct: 168 EDSAFVDSP-----YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGF 222
Query: 115 ITYDSEEAVDRVLFKTFHE-LNGKMVEVKRA 144
+T+ SEE V+ + + L G+ + V +A
Sbjct: 223 VTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 63 PGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 122
P + +++++G +P T+T ++ G + V VMYD + R R FGF T S E
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 123 VDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRS 156
+ V+ K LNG VE R + ++ PI S
Sbjct: 130 ANAVVEK----LNGNTVE-GREIKVNITEKPIAS 158
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 12/151 (7%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEA----KKAVPRDDQNTLNR 54
M D+ +GR+R FGF A V+ ++ + ++GR ++ K D + L
Sbjct: 108 MYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQS 167
Query: 55 QSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
+ SP K++VG L T+T+ +N F + G + V T + GFGF
Sbjct: 168 EDSAFVDSP-----YKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGF 222
Query: 115 ITYDSEEAVDRVLFKTFHE-LNGKMVEVKRA 144
+T+ SEE V+ + + L G+ + V +A
Sbjct: 223 VTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 63 PGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEA 122
P + +++++G +P T+T ++ G + V VMYD + R R FGF T S E
Sbjct: 70 PSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVED 129
Query: 123 VDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRS 156
+ V+ K LNG VE R + ++ PI S
Sbjct: 130 ANAVVEK----LNGNTVE-GREIKVNITEKPIAS 158
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVP---RDD--------Q 49
D+ TGR+RGFGFV + + E + + +DGR + P R+D
Sbjct: 125 DKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSS 184
Query: 50 NTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRP 109
+ G G G G +++VG L + + ++ F + G + + V+YD ++ R
Sbjct: 185 FGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRS 244
Query: 110 RGFGFITYDSEEAVDRVLFKTFH--ELNGKMVEVKRA 144
+GFGF+TYDS + V + K+ +L+G+ + V A
Sbjct: 245 KGFGFVTYDSSQEVQNAI-KSLDGADLDGRQIRVSEA 280
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVG LP + + F+ G + V V+YD T R RGFGF+T S V+ +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA-Q 150
Query: 130 TF--HELNGKMVEVKRAVP 146
F +EL+G+ + V P
Sbjct: 151 QFNGYELDGRPLRVNAGPP 169
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390049-1393760 FORWARD LENGTH=952
Length = 952
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHN-TQRPRGFGFITYDSEEAVDRVLF 128
KIFVG LP+ I + +F+ +F QFG I +V+++ H+ ++ GFGFI Y +E++ + +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 129 KTFHELNGKMVEVK 142
E +G+++ VK
Sbjct: 226 FDGVEFHGRILTVK 239
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 13/123 (10%)
Query: 7 GRARGFGFVVF--ADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPG 64
G+++GFGFV F AV+ R + ++ G+ + K + +D++ + G
Sbjct: 148 GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAM----------AG 197
Query: 65 TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 124
+ ++V L T+T+ F Q+GT++ VVVM D R RGFGF+ + + E
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAK 256
Query: 125 RVL 127
+ +
Sbjct: 257 KAM 259
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKK-----AVPRDDQNTLNRQ 55
MRD GR+RGFGFV F +P A++ + + G + +KK A+ +D++ + +Q
Sbjct: 234 MRD-GMGRSRGFGFVNFCNPENAKKAM---ESLCGLQLGSKKLFVGKALKKDERREMLKQ 289
Query: 56 --SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
S P R ++V L ++ E+ + F +G I VM H R +GFG
Sbjct: 290 KFSDNFIAKPNM-RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFG 347
Query: 114 FITY-DSEEAVDRVLFKTFHELNGKMVEVKRAVPKE 148
F+ + + EE+ + ++GK + V+ A KE
Sbjct: 348 FVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKE 383
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE-EAVDRVLF 128
+++VG L T T+ + F +G + D +VM D T R RGFGF+TY S EA V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 129 KTFHELNGKMVEVK 142
ELNG+ V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 20/152 (13%)
Query: 9 ARGFGFVVFADPAVAERVIV--------DKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
RG+ FV F +P A R K + GR A+K R+ L Q H
Sbjct: 240 CRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGR---AQKKAERE--QLLREQFKEKH 294
Query: 61 GSPG-TGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS 119
+ I+V + +TE + + +F Q GTIT +M D + +GFGF+ + +
Sbjct: 295 EEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFST 353
Query: 120 -EEAVDRVLFKTFH--ELNGKMVEVKRAVPKE 148
EEA+D V KTFH +GK + V A KE
Sbjct: 354 PEEAIDAV--KTFHGQMFHGKPLYVAIAQKKE 383
>AT1G76460.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28686932-28688506 REVERSE LENGTH=285
Length = 285
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + +F+Q+G I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 130 TFHELNGKMVEVKRAVPKELSPGPIRSPLIGSYNYGLNRASSYLNSYAQGFNMNPVGGLG 189
++G+ A P P+ +I + L AS Y+ + QG + +G
Sbjct: 85 PTPIIDGRRANCNLASLGRPRP-PLPYAVIPNMPGRLRPASPYIGN-VQGPRGSLIGNYP 142
Query: 190 VRMDGRFNLNPLTSSRGGLTPFGFSGYG 217
+ +N +G + P+G + YG
Sbjct: 143 YQQPLPYNYQ-----QGVVYPYGVTAYG 165
>AT1G20880.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + +FDQ+G I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 130 TFHELNGK-----MVEVKRAVPK------ELSPGPIR--SPLIGS 161
++G+ + + R+ P +PG +R SP +GS
Sbjct: 85 PTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS 129
>AT1G20880.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7262879-7264834 REVERSE LENGTH=274
Length = 274
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + +FDQ+G I + VV+ D NT R +G+GF+T+ EA R
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 130 TFHELNGK-----MVEVKRAVPK------ELSPGPIR--SPLIGS 161
++G+ + + R+ P +PG +R SP +GS
Sbjct: 85 PTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGS 129
>AT1G18630.1 | Symbols: GR-RBP6 | glycine-rich RNA-binding protein 6
| chr1:6415226-6416283 FORWARD LENGTH=155
Length = 155
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 70 KIFVGGL-PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLF 128
KIFVGGL PST E K F FG I D VV+ D + RGFGF+TYDS E + +
Sbjct: 37 KIFVGGLSPSTDVEL-LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 129 KTFH-ELNGKMVEVKRA 144
+ EL+G+++ V A
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GG+ ++ E + F ++G + D V+ D T R RGFGF+T+ S EA +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 128 FK-TFHELNGKMVEVKRA 144
+L+G++V+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + D + F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 129 KTFHELNGKMVEVKRA 144
EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + D + F QFG + D ++ D + R RGFGF+T+ E+A+ D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 129 KTFHELNGKMVEVKRA 144
EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT5G53680.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21798382-21799109 FORWARD LENGTH=169
Length = 169
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
KI+VGGLP T + N+F +FG I V V+ D T R +G+GF+T+ E+ R
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 130 TFHELNGKMVEVKRA 144
+ G++ K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 20/136 (14%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAK--KAVPRDDQNTLNRQSGG 58
+ DR TGR++G+GFV FAD + R + + ++G+ ++ + P ++ L Q
Sbjct: 206 VNDRTTGRSKGYGFVRFADESEQIRAMTE---MNGQYCSSRPMRTGPAANKKPLTMQPAS 262
Query: 59 VHGSPGTG-----RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRG-- 111
+ G IFVG + ++TE D K+ F QFG + V + P G
Sbjct: 263 YQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI--------PAGKR 314
Query: 112 FGFITYDSEEAVDRVL 127
GF+ Y + ++ L
Sbjct: 315 CGFVQYANRACAEQAL 330
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 128 FKTF-HELNGKMVEVKRAVPKELSP 151
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 128 FKTF-HELNGKMVEVKRAVPKELSP 151
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 128 FKTF-HELNGKMVEVKRAVPKELSP 151
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 6 TGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGT 65
TGR++G+GFV F A+ I DK ++G + K+ + + RQ + T
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAI-DK--LNGMLMNDKQVFV---GHFIRRQERARDENTPT 225
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
R ++V LP I E + + F +FG I+ VVM D + R FGF+ ++ EA
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAAS 284
Query: 126 VLFK 129
+ K
Sbjct: 285 AVEK 288
>AT4G16280.4 | Symbols: | RNA binding;abscisic acid binding |
chr4:9207164-9214187 REVERSE LENGTH=672
Length = 672
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
++D+ TG+ +G FV +A A+R I H +Q TL +G V
Sbjct: 77 IKDKRTGQQQGCCFVKYATSKDADRAIRALH----------------NQITLPGGTGPVQ 120
Query: 61 GSPGTGRTK-------KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
G + K+FVG L TE + + F QFG + DV +M D Q RG G
Sbjct: 121 VRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCG 179
Query: 114 FITYDSEEAVDRVL-----FKTFHELNGKMVEVKRAVPKELSPGPIR--SPLIG------ 160
F+ Y S+E + T N ++ V+ A PK PG R +P +G
Sbjct: 180 FVKYSSKETAMAAIDGLNGTYTMRGCNQPLI-VRFAEPKRPKPGESREMAPPVGLGSGPR 238
Query: 161 --------SYNYGLNRAS-SYLNSY--AQGFNMNPVGGLGVRMDGR-FNLNP----LTSS 204
+ N+G + S+ N + A N+ P G+R G F+ P L S+
Sbjct: 239 FQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSN 298
Query: 205 RGGLTPFGFSGYG 217
+GG P G GYG
Sbjct: 299 QGG--PLG--GYG 307
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ Y + + DR +
Sbjct: 44 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 103
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
R+ TG +RG G+V A+ I +D + GR + + +V D N R++ V
Sbjct: 141 RNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSV---DMNPGTRRNPEV 197
Query: 60 HGSPGTG-----RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
S K++VG LP +N+F +FGTI V++D T R R F F
Sbjct: 198 LNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAF 257
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKE 148
+++ S E D L NG E +R + +E
Sbjct: 258 LSFTSGEERDAAL-----SFNGTQYEGRRIIVRE 286
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHII--DGRTVEAKKAVPRDDQNTLNRQ----- 55
D TGR++G+GFV F D + + + + + R + A PR N +Q
Sbjct: 234 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK-TNGYQQQGGYMP 292
Query: 56 SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
SG S G IFVGGL S++T+ D K F +FG I V + +G GF+
Sbjct: 293 SGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFV 346
Query: 116 TY----DSEEAVDRV 126
+ ++EEA++++
Sbjct: 347 QFVNRPNAEEALEKL 361
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 81/198 (40%), Gaps = 30/198 (15%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKH--IIDGRTVEAKKAVPRDDQNTLNRQSG--- 57
D TGR++G+GFV F D R + + + R + A P+ +Q+G
Sbjct: 248 DSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAA-AYGQQNGSQA 306
Query: 58 ----GVHG-----SPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQR 108
G HG S G IFVGGL + +TE D F FG + V +
Sbjct: 307 LTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG----- 361
Query: 109 PRGFGFITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGP---IRSPLIGSYNYG 165
+G GF+ + + ++ + + LNG ++ K V P RS +N G
Sbjct: 362 -KGCGFVQFANRQSAEEAI----GNLNGTVIG-KNTVRLSWGRSPNKQWRSDSGNQWNGG 415
Query: 166 LNRASSYLNSYA-QGFNM 182
+R Y N YA Q NM
Sbjct: 416 YSRGQGYNNGYANQDSNM 433
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 69/154 (44%), Gaps = 15/154 (9%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGV 59
R+ TG +RG G+V A+ I +D + GR + + +V D N R++ V
Sbjct: 142 RNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSV---DMNPGTRRNPEV 198
Query: 60 HGSPGTG-----RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGF 114
S K++VG LP +N+F +FGTI V++D T R R F F
Sbjct: 199 LNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAF 258
Query: 115 ITYDSEEAVDRVLFKTFHELNGKMVEVKRAVPKE 148
+++ S E D L NG E +R + +E
Sbjct: 259 LSFTSGEERDAAL-----SFNGTQYEGRRIIVRE 287
>AT4G16280.2 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9207164-9214412 REVERSE LENGTH=747
Length = 747
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
++D+ TG+ +G FV +A A+R I H +Q TL +G V
Sbjct: 152 IKDKRTGQQQGCCFVKYATSKDADRAIRALH----------------NQITLPGGTGPVQ 195
Query: 61 GSPGTGRTK-------KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
G + K+FVG L TE + + F QFG + DV +M D Q RG G
Sbjct: 196 VRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCG 254
Query: 114 FITYDSEEAVDRVL-----FKTFHELNGKMVEVKRAVPKELSPGPIR--SPLIG------ 160
F+ Y S+E + T N ++ V+ A PK PG R +P +G
Sbjct: 255 FVKYSSKETAMAAIDGLNGTYTMRGCNQPLI-VRFAEPKRPKPGESREMAPPVGLGSGPR 313
Query: 161 --------SYNYGLNRAS-SYLNSY--AQGFNMNPVGGLGVRMDGR-FNLNP----LTSS 204
+ N+G + S+ N + A N+ P G+R G F+ P L S+
Sbjct: 314 FQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSN 373
Query: 205 RGGLTPFGFSGYG 217
+GG P G GYG
Sbjct: 374 QGG--PLG--GYG 382
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ Y + + DR +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
>AT4G16280.3 | Symbols: FCA | RNA binding;abscisic acid binding |
chr4:9208564-9214412 REVERSE LENGTH=533
Length = 533
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 105/253 (41%), Gaps = 58/253 (22%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
++D+ TG+ +G FV +A A+R I H +Q TL +G V
Sbjct: 152 IKDKRTGQQQGCCFVKYATSKDADRAIRALH----------------NQITLPGGTGPVQ 195
Query: 61 GSPGTGRTK-------KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFG 113
G + K+FVG L TE + + F QFG + DV +M D Q RG G
Sbjct: 196 VRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQS-RGCG 254
Query: 114 FITYDSEEAVDRVL-----FKTFHELNGKMVEVKRAVPKELSPGPIR--SPLIG------ 160
F+ Y S+E + T N ++ V+ A PK PG R +P +G
Sbjct: 255 FVKYSSKETAMAAIDGLNGTYTMRGCNQPLI-VRFAEPKRPKPGESREMAPPVGLGSGPR 313
Query: 161 --------SYNYGLNRAS-SYLNSY--AQGFNMNPVGGLGVRMDGR-FNLNP----LTSS 204
+ N+G + S+ N + A N+ P G+R G F+ P L S+
Sbjct: 314 FQASGPRPTSNFGDSSGDVSHTNPWRPATSRNVGPPSNTGIRGAGSDFSPKPGQATLPSN 373
Query: 205 RGGLTPFGFSGYG 217
+GG P G GYG
Sbjct: 374 QGG--PLG--GYG 382
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ Y + + DR +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAK--KAVPRDDQNTLNRQSGGVH 60
DR TGR++G+GFV FAD R + + ++G+ + + P ++N L Q
Sbjct: 189 DRTTGRSKGYGFVRFADENEQMRAMTE---MNGQYCSTRPMRIGPAANKNALPMQPAMYQ 245
Query: 61 GSPGTG------RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRG--F 112
+ G IFVGGL + +T+ + K+ F QFG + V + P G
Sbjct: 246 NTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI--------PPGKRC 297
Query: 113 GFITYDSEEAVDRVL 127
GF+ Y ++ + + L
Sbjct: 298 GFVQYANKASAEHAL 312
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R++ TG++ G+GF+ F +VAERV+ +G + + + R LN G
Sbjct: 92 IRNKLTGQSEGYGFIEFVSHSVAERVL---QTYNGAPMPSTEQTFR-----LNWAQAGAG 143
Query: 61 GS--PGTGRTKKIFVGGLPSTITESDFKNYFDQ-FGTITDVVVMYDHNTQRPRGFGFITY 117
G IFVG L +T+ + F +G++ V+ D T R +G+GF+ +
Sbjct: 144 EKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRF 203
Query: 118 DSEEAVDRVLFKTFHELNGKMVEVKRAVPKELSPGPIRSPL 158
E R + E+NG+ + P + P ++ L
Sbjct: 204 ADENEQMRAM----TEMNGQYCSTR---PMRIGPAANKNAL 237
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNT--LNRQS 56
M+D G+++GFGFV F + A R + ++ H D + +A + ++ T R
Sbjct: 247 MKD-GEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYE 305
Query: 57 GGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
+ + ++ ++V L +I++ K F FGT+T VM D N +G GF+
Sbjct: 306 QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS-KGSGFVA 364
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVK 142
+ + E + +L+GKM+E K
Sbjct: 365 FATPEEATEAM----SQLSGKMIESK 386
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 76/146 (52%), Gaps = 14/146 (9%)
Query: 5 ATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGS 62
++G+++G+GFV +A+ A++ I ++ +++ + V + R ++++ ++
Sbjct: 159 SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKT------ 212
Query: 63 PGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD-SEE 121
+ ++V L + T+ D KN F ++G IT VVM D + +GFGF+ ++ +++
Sbjct: 213 ----KFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADD 267
Query: 122 AVDRVLFKTFHELNGKMVEVKRAVPK 147
A V H+ + K V RA K
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKK 293
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGG 58
RD T R+ G+G+V F +P A R I + + I G+ + +
Sbjct: 68 CRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYS--------------- 112
Query: 59 VHGSPGTGRTK--KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
H P R+ IF+ L +I + F FG I V D + Q +G+GF+
Sbjct: 113 -HRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQS-KGYGFVQ 170
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKR 143
Y +EE+ + + K LNG ++ K+
Sbjct: 171 YANEESAQKAIEK----LNGMLLNDKQ 193
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
G K+F+GGL TE F + G + + ++ D + R +GFGF+T+ S + +
Sbjct: 31 GVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQK 90
Query: 126 VLFK-TFHELNGKMVEVKRAVPKE 148
L + +LNG+ + V A K+
Sbjct: 91 ALMEFNGQQLNGRTIFVDYAKAKQ 114
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ ++ E A +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 128 FKTF-HELNGKMVEVKRA 144
+ ELNG+ + V A
Sbjct: 94 SEMDGKELNGRHIRVNPA 111
>AT1G78260.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29450181 FORWARD LENGTH=287
Length = 287
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ ++ R +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 12 FGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKI 71
+GFV + D A I+ ++GR + + T R+ H + I
Sbjct: 102 YGFVHYFDRRCASMAIM---TLNGRHIFGQPMKVNWAYATGQREDTSSHFN--------I 150
Query: 72 FVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKTF 131
FVG L +T++ + F F + +D VM+D T R RGFGF+++ +++ +
Sbjct: 151 FVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI---- 206
Query: 132 HELNGKMVEVKR 143
+E+NGK V ++
Sbjct: 207 NEMNGKWVSSRQ 218
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 29/154 (18%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGG 58
M+DR +G ++G+ FV F VA++ I + H + G+T+ + T NR
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS------ETKNR---- 197
Query: 59 VHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFIT 116
+F+G +P TE +F+ + G + ++ ++ D NT R RGF F+
Sbjct: 198 ------------LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVL 245
Query: 117 YDSEEAVD---RVLFKTFHELNGKMVEVKRAVPK 147
Y + D + + + +L G V A PK
Sbjct: 246 YYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK 279
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 29/154 (18%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGG 58
M+DR +G ++G+ FV F VA++ I + H + G+T+ + T NR
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS------ETKNR---- 197
Query: 59 VHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFIT 116
+F+G +P TE +F+ + G + ++ ++ D NT R RGF F+
Sbjct: 198 ------------LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVL 245
Query: 117 YDSEEAVD---RVLFKTFHELNGKMVEVKRAVPK 147
Y + D + + + +L G V A PK
Sbjct: 246 YYNNACADYSRQKMIDSNFKLEGNAPTVTWADPK 279
>AT1G07350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2257732-2260101 REVERSE LENGTH=382
Length = 382
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
++V GL +TE D +++F + G +TDV ++ D T+ RGFGFI+ S +R +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 131 FHE-LNGKMVEVKRA 144
H L G+++ V++A
Sbjct: 137 DHSVLQGRVITVEKA 151
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 6 TGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSP 63
GR++G+GFV F A+ I ++ +++ + V V R D+ +SG V
Sbjct: 182 VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR--ARSESGAVPS-- 237
Query: 64 GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
++V LP IT+ + K F ++G I+ VVM D + R FGF+ + S EA
Sbjct: 238 ----FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAA 292
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 6 TGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGSP 63
GR++G+GFV F A+ I ++ +++ + V V R D+ +SG V
Sbjct: 182 VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR--ARSESGAVPS-- 237
Query: 64 GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
++V LP IT+ + K F ++G I+ VVM D + R FGF+ + S EA
Sbjct: 238 ----FTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAA 292
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 15/148 (10%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI--VDKHIIDGRTVEAKKA-VPRDDQNTLNRQSG 57
+ +R TG++RGF FV ++ +I +D GR ++ A P+ ++ L ++
Sbjct: 117 LYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPET- 175
Query: 58 GVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITY 117
K+FVG L T+T F + G + V++D +T R RG+GF+ Y
Sbjct: 176 ----------EHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCY 225
Query: 118 DSEEAVDRVLFKTF-HELNGKMVEVKRA 144
S+ ++ L EL G+ + V A
Sbjct: 226 SSKAEMETALESLDGFELEGRAIRVNLA 253
>AT1G22330.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:7886693-7889241 FORWARD LENGTH=291
Length = 291
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + + YFDQFG I + V++ D T + +G+GF+T+ ++ R +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 78 PNPVIDGRKANCNIA 92
>AT3G20930.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7331739-7333749 FORWARD LENGTH=374
Length = 374
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
+TKK+F+ GL +E + F+ FG + +V ++ D ++R +G+ F+ Y +EEA
Sbjct: 280 KTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTA 339
Query: 127 LFKTFHELNGKMV 139
L E+NGK++
Sbjct: 340 L----KEMNGKII 348
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 18/135 (13%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHII--DGRTVEAKKAVPRDDQNTLNRQSG--- 57
D TGR++G+GFV F D + + + + + R + A PR N +Q G
Sbjct: 232 DANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK-TNGYQQQGGYMP 290
Query: 58 -GVHGSP-GTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
G P G IFVGGL S++T+ D K F++FG I V + +G GF+
Sbjct: 291 NGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG------KGCGFV 344
Query: 116 TY----DSEEAVDRV 126
+ ++EEA++++
Sbjct: 345 QFVNRPNAEEALEKL 359
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSE 120
K+F+GGL ++ E K+ F FG + +V + YD + R RGFGF+ + E
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
+ KIFVGG+ + E + F ++G + D ++ D T R RGF F+T+ S E +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 128 FKTFHELNGKMVEVKRAVP 146
+L+G+ + V A
Sbjct: 93 QLDGQDLHGRRIRVNYATE 111
>AT3G15010.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 20/149 (13%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGS 62
D+ TG+++G+GFV F +DG + K+ + D Q G+
Sbjct: 109 DKVTGKSKGYGFVTFMH-------------VDGALLALKEPSKKIDGRVTVTQLA-ASGN 154
Query: 63 PGTGRT------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
GTG +KI+V +P + N+F +G + + + +D T + RGF
Sbjct: 155 QGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV 214
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKRAV 145
Y + E L ++GK + K AV
Sbjct: 215 YKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT3G15010.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:5052844-5054058 FORWARD LENGTH=404
Length = 404
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 20/149 (13%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVHGS 62
D+ TG+++G+GFV F +DG + K+ + D Q G+
Sbjct: 109 DKVTGKSKGYGFVTFMH-------------VDGALLALKEPSKKIDGRVTVTQLA-ASGN 154
Query: 63 PGTGRT------KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFIT 116
GTG +KI+V +P + N+F +G + + + +D T + RGF
Sbjct: 155 QGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV 214
Query: 117 YDSEEAVDRVLFKTFHELNGKMVEVKRAV 145
Y + E L ++GK + K AV
Sbjct: 215 YKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
IFVG L +T++ F F + +D VM+D T R RGFGF+++ +++ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI--- 202
Query: 131 FHELNGKMVEVKR 143
+E+NGK + ++
Sbjct: 203 -NEMNGKWLSSRQ 214
>AT1G78260.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:29447317-29449246 FORWARD LENGTH=271
Length = 271
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+T+ ++ R +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT5G11412.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3640349-3640876 REVERSE LENGTH=175
Length = 175
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
R KI+VGGLP ++YF+QFG I V ++ D T R G+GF+T+ E+ R
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATR 108
>AT2G21690.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9270114-9270597 REVERSE LENGTH=117
Length = 117
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLFK 129
FV GL E D + F +FG + D ++YD +T + R FGF+T++ E+++ D ++
Sbjct: 9 CFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
Query: 130 TFHELNGKMVEV 141
E K V V
Sbjct: 69 DVEESRSKCVNV 80
>AT1G22910.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107659 FORWARD LENGTH=249
Length = 249
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+T+ EA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107949 FORWARD LENGTH=347
Length = 347
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+T+ EA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67
>AT1G22910.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:8105808-8107618 FORWARD LENGTH=242
Length = 242
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFK 129
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+T+ EA
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 130 TFHELNGKMVEVKRA 144
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 33 IDGRTVEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQF 92
IDG V+A + DD + + ++ G GR +FV GLP + TE + +F +F
Sbjct: 195 IDGE-VKADRVDKDDDGHAMEVEADGSDDVLDAGR---LFVHGLPYSTTEEELMEHFSKF 250
Query: 93 GTITDVVVMYDHNTQRPRGFGFITY 117
G I++V ++ D +T+ RG F+ Y
Sbjct: 251 GDISEVHLVLDKDTRSCRGMAFVLY 275
>AT4G39260.4 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=105
Length = 105
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV 123
+ FVGGL + D + F QFG + D ++ D + R RGFGF+T+ E+A+
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
>AT3G54770.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:20273863-20275827 REVERSE LENGTH=261
Length = 261
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 56 SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
S V+G G + K+FVGGL + ++F ++G I + V++ D T+R +G+GF+
Sbjct: 4 SNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFV 63
Query: 116 TYDSEEAVDRVLFKTFHELNGKMVEVKRA 144
T+ +A R + +NG+ A
Sbjct: 64 TFKDAKAATRACEDSTPIINGRRANCNLA 92
>AT3G06970.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2199653-2201150 REVERSE LENGTH=317
Length = 317
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 67 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRV 126
R KIFVG L T D + YF+QFG + D V+ + R +G+GFIT+ + R
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRA 69
Query: 127 LFKTFHELNGKMVEVKRAV--PKELSPGPIRSPLIGSYNYGL-----NRASSYLNSYAQG 179
L + ++G+ A K+ P L GS+NY + +A ++ Y
Sbjct: 70 LQNSKPIIDGRTTNCNLASAGAKQNMNHP---NLNGSFNYVIPPHQYQQAPQHVIPYCPP 126
Query: 180 FNMNPVGGLGVRMDGRFNLNPL 201
N V G + M +N NP
Sbjct: 127 HTWNHVWGQYIYM---YNNNPC 145
>AT1G07350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:2258816-2259586 REVERSE LENGTH=129
Length = 129
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
++V GL +TE D +++F + G +TDV ++ D T+ RGFGFI+ S +R +
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 131 FHE-LNGKMVEVKRAVPKELS 150
H L G+++ V++ + +++
Sbjct: 107 DHSVLQGRVITVEKFLWQQVC 127
>AT4G00830.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
M+DR +G ++G+ FV F VA++ I + H + E K + + +L
Sbjct: 148 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELH-----SKEFKASSTANCSLSL-------- 194
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGT-ITDVVVMYD-HNTQRPRGFGFITYD 118
+ ++F+G +P TE +F+ + G + ++ ++ D NT R RGF F+ Y
Sbjct: 195 -------SNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYY 247
Query: 119 SEEAVD---RVLFKTFHELNGKMVEVKRAVPK 147
+ D + + + +L G V A PK
Sbjct: 248 NNACADYSRQKMIDSNFKLEGNAPTVTWADPK 279
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRT-------VEAKKAVPRDDQNTLNRQ 55
DR TGR +G+GFV F+D + R + + + + T +KK V +++
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGV-TGQRDSYQSS 248
Query: 56 SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRG--FG 113
+ GV T +FVGGL +++T+ KN F Q+G I V + P G G
Sbjct: 249 AAGVTTDNDPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHVKI--------PAGKRCG 299
Query: 114 FITYDSEEAVDRVL 127
F+ + + + L
Sbjct: 300 FVQFSEKSCAEEAL 313
>AT5G18810.1 | Symbols: SCL28, At-SCL28 | SC35-like splicing factor
28 | chr5:6268925-6271158 REVERSE LENGTH=236
Length = 236
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 47 DDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNT 106
DD R S H S G + + LP +D ++ F++FG + D+ + ++ T
Sbjct: 28 DDNRLRERPSSRDHESSGPS---GLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYT 84
Query: 107 QRPRGFGFITY----DSEEAVDRVLFKTF--HELNGKMVEVKRAVPKEL 149
PRGFGF+ Y D+ EA+ R+ K E+ E R P+E+
Sbjct: 85 GEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEM 133
>AT2G21660.2 | Symbols: ATGRP7, CCR2 | cold, circadian rhythm, and
rna binding 2 | chr2:9265477-9266316 REVERSE LENGTH=159
Length = 159
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + + F Q+G + D ++ D T R RGFGF+T+ E+A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 129 KTFHELNGKMVEVKRA 144
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | cold,
circadian rhythm, and rna binding 2 |
chr2:9265477-9266316 REVERSE LENGTH=176
Length = 176
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 70 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAV-DRVLF 128
+ FVGGL + + F Q+G + D ++ D T R RGFGF+T+ E+A+ D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 129 KTFHELNGKMVEVKRA 144
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT1G73530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:27643801-27645386 REVERSE LENGTH=181
Length = 181
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 66 GRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDR 125
G K++V GL TE ++ F+QFG + + ++ D RP+GF F+ Y++EE
Sbjct: 74 GPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEA-- 131
Query: 126 VLFKTFHELNGKMV--------------EVKRAVPKELSPGPIRSP 157
K ++GK + ++ RA P+ P P P
Sbjct: 132 --MKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGG 58
M+DR +G ++G+ FV F VA++ I + H + G+T+ + T NR
Sbjct: 128 MKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKGKTIRCSLS------ETKNR---- 177
Query: 59 VHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYD 118
+F+G +P TE +F+ I DV NT R RGF F+ Y
Sbjct: 178 ------------LFIGNIPKNWTEDEFRK------VIEDVGPGDPTNTTRNRGFAFVLYY 219
Query: 119 SEEAVD---RVLFKTFHELNGKMVEVKRAVPK 147
+ D + + + +L G V A PK
Sbjct: 220 NNACADYSRQKMIDSNFKLEGNAPTVTWADPK 251
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 37/169 (21%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVI-------------------------VDKHIIDG 35
M D+ TGR+RGFGFV F + A+ I DK D
Sbjct: 171 MWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDS 230
Query: 36 RT-VEAKKAVPRDDQNTLNRQSGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGT 94
++ VE V D ++T N ++ + ++VG L +++ D +F G
Sbjct: 231 KSVVELTSGVSEDGKDTTNGEA-----PENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG- 284
Query: 95 ITDVVVMYDHNTQRPRGFGFITYDS--EEAVDRVLFKTFHELNGKMVEV 141
V+ + QR +GFGF+ Y + E A+ + T L+G+ ++
Sbjct: 285 ---AGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKC 330
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE LENGTH=352
Length = 352
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 71 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLFKT 130
++VGG+P +TE D F Q+G I DV ++ D T + +GF F+ Y+ + R
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQ----RSTILA 93
Query: 131 FHELNGKMV 139
LNG +V
Sbjct: 94 VDNLNGALV 102
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 11/144 (7%)
Query: 1 MRDRATGRARGFGFVVF--ADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGG 58
M+D G++R FGFV F A+ AV ++ ++D + + +A + ++ +
Sbjct: 151 MKD-GEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFE 209
Query: 59 VHGSPGTGRTKK---IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFI 115
+ +T+K ++V L ++ + + F +FGTIT VM H+ +G GF+
Sbjct: 210 LEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMV-HSNGISKGVGFV 268
Query: 116 TYDSEEAVDRVLFKTFHELNGKMV 139
+ + E + + K +NGKMV
Sbjct: 269 EFSTSEEASKAMLK----MNGKMV 288
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQN---TLNRQSG 57
+R++ T ++ G+GFV F A AE V+ + + +P DQ S
Sbjct: 140 IRNKLTSQSEGYGFVEFLSRAAAEEVLQNY---------SGSVMPNSDQPFRINWASFST 190
Query: 58 GVHGSPGTGRTKKIFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFIT 116
G + G +FVG L +T+ F D++ ++ V+ D NT R +G+GF+
Sbjct: 191 GEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVR 250
Query: 117 YDSEEAVDRVLFKTFHELNG-----KMVEVKRAVPK 147
+ E R L E+NG + + V A PK
Sbjct: 251 FGDENERSRALT----EMNGAYCSNRQMRVGIATPK 282
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R++ TG+ G+GF+ F A AER + +G + + R LN S G
Sbjct: 56 IRNKITGQPEGYGFIEFISHAAAERTL---QTYNGTQMPGTELTFR-----LNWASFGSG 107
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFD-QFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G IFVG L +T+ + F + ++ V+ D +T R +G+GF+ +
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Query: 120 EEAVDRVLFKTFHELNG-----KMVEVKRAVPKE 148
E +R + E+NG + + + A PK+
Sbjct: 168 ESERNRAM----AEMNGLYCSTRPMRISAATPKK 197
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 19/151 (12%)
Query: 2 RDRATGRARGFGFVVFADPAVAERVIVDKHIID--GRTVEAKKAVPRDDQNTLNRQSGGV 59
+DR T + +GF+ + A+ I ++I G+ + KA D+ +L+ +
Sbjct: 58 KDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA--SQDKKSLDVGA--- 112
Query: 60 HGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYD 118
+F+G L + E + F FG I ++ +M D +T RGFGFI+YD
Sbjct: 113 ----------NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYD 162
Query: 119 SEEAVDRVLFK-TFHELNGKMVEVKRAVPKE 148
S EA D + T L+ + + V A K+
Sbjct: 163 SFEASDAAIESMTGQYLSNRQITVSYAYKKD 193
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 1 MRDRATGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQNTLNRQSGGVH 60
+R++ TG+ G+GF+ F A AER + +G + + R LN S G
Sbjct: 56 IRNKITGQPEGYGFIEFISHAAAERTL---QTYNGTQMPGTELTFR-----LNWASFGSG 107
Query: 61 GSPGTGRTKKIFVGGLPSTITESDFKNYFD-QFGTITDVVVMYDHNTQRPRGFGFITYDS 119
G IFVG L +T+ + F + ++ V+ D +T R +G+GF+ +
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Query: 120 EEAVDRVLFKTFHELNG-----KMVEVKRAVPKE 148
E +R + E+NG + + + A PK+
Sbjct: 168 ESERNRAM----AEMNGLYCSTRPMRISAATPKK 197
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 15/142 (10%)
Query: 3 DRATGRARGFGFVVFADPAVAERVI-VDKHIIDGRTVE---AKKAVPRDDQNTLNRQSGG 58
+R G RGFG V FA A++ + + GR + A++ R ++ QSG
Sbjct: 331 NRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGN 390
Query: 59 VHGSPGTGRTKKIFVGGLPSTITESDFKN----YFDQFGTITDVVVMYDHNTQRPRGFGF 114
G KKIFV G ++++E D KN +F G I +V V D +T +G +
Sbjct: 391 FRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAY 450
Query: 115 ITYDSEEAVDRVLFKTFHELNG 136
+ + E ++ L ELNG
Sbjct: 451 LEFS--EGKEKAL-----ELNG 465
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 3 DRATGRARGFGFVVFADPAVAERVIVDKHIIDGRT-------VEAKKAVPRDDQNTLNRQ 55
DR TGR +G+GFV F+D + R + + + + T +KK V +++
Sbjct: 190 DRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGV-TGQRDSYQSS 248
Query: 56 SGGVHGSPGTGRTKKIFVGGLPSTITESDFKNYFDQFGTITDVVV 100
+ GV T +FVGGL +++T+ KN F Q+G I V +
Sbjct: 249 AAGVTTDNDPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 47.4 bits (111), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 68 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 127
T ++FV LP T TE + +F FG I++V ++ D T+R RG +I Y E R +
Sbjct: 293 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 352
Query: 128 FKTFH-ELNGKMVEVKRAVPKELS 150
+ + G+++ + A +E S
Sbjct: 353 EELDNSSFQGRLLHILPAKHRETS 376