Miyakogusa Predicted Gene

Lj2g3v3224260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3224260.1 Non Chatacterized Hit- tr|A9NK26|A9NK26_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,64.29,4e-19,ATP_synt_H,ATPase, V0 complex, subunit E; VACUOLAR ATP
SYNTHASE SUBUNIT H,ATPase, V0 complex, subuni,CUFF.39895.1
         (112 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26710.2 | Symbols:  | ATPase, V0 complex, subunit E | chr4:1...   114   9e-27
AT4G26710.1 | Symbols:  | ATPase, V0 complex, subunit E | chr4:1...   114   9e-27
AT5G55290.2 | Symbols:  | ATPase, V0 complex, subunit E | chr5:2...   112   4e-26
AT5G55290.1 | Symbols:  | ATPase, V0 complex, subunit E | chr5:2...   112   4e-26

>AT4G26710.2 | Symbols:  | ATPase, V0 complex, subunit E |
           chr4:13468705-13469668 FORWARD LENGTH=70
          Length = 70

 Score =  114 bits (286), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 43  MGFPATTLIFAAIGIVASLCTVICFNRGSSSNLFHLTLVLTATICCWMMWAIVYLAQMKP 102
           M F  T+LIFA +GI+AS+CT ICFN+G S+NL HLTLV+TAT+CCWMMWAIVY+AQM P
Sbjct: 1   MAFVVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNP 60

Query: 103 LIVPILSEAE 112
           LIVPILSE E
Sbjct: 61  LIVPILSEVE 70


>AT4G26710.1 | Symbols:  | ATPase, V0 complex, subunit E |
           chr4:13468705-13469668 FORWARD LENGTH=70
          Length = 70

 Score =  114 bits (286), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 52/70 (74%), Positives = 61/70 (87%)

Query: 43  MGFPATTLIFAAIGIVASLCTVICFNRGSSSNLFHLTLVLTATICCWMMWAIVYLAQMKP 102
           M F  T+LIFA +GI+AS+CT ICFN+G S+NL HLTLV+TAT+CCWMMWAIVY+AQM P
Sbjct: 1   MAFVVTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNP 60

Query: 103 LIVPILSEAE 112
           LIVPILSE E
Sbjct: 61  LIVPILSEVE 70


>AT5G55290.2 | Symbols:  | ATPase, V0 complex, subunit E |
           chr5:22423037-22424086 REVERSE LENGTH=70
          Length = 70

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 43  MGFPATTLIFAAIGIVASLCTVICFNRGSSSNLFHLTLVLTATICCWMMWAIVYLAQMKP 102
           MGF  TTLIF  +GI+ASLC  IC NRG S+NL HLTLV+TAT+CCWMMWAIVY+AQM P
Sbjct: 1   MGFLITTLIFVVVGIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNP 60

Query: 103 LIVPILSEAE 112
           LIVPILSE E
Sbjct: 61  LIVPILSETE 70


>AT5G55290.1 | Symbols:  | ATPase, V0 complex, subunit E |
           chr5:22423037-22424086 REVERSE LENGTH=70
          Length = 70

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/70 (75%), Positives = 59/70 (84%)

Query: 43  MGFPATTLIFAAIGIVASLCTVICFNRGSSSNLFHLTLVLTATICCWMMWAIVYLAQMKP 102
           MGF  TTLIF  +GI+ASLC  IC NRG S+NL HLTLV+TAT+CCWMMWAIVY+AQM P
Sbjct: 1   MGFLITTLIFVVVGIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNP 60

Query: 103 LIVPILSEAE 112
           LIVPILSE E
Sbjct: 61  LIVPILSETE 70