Miyakogusa Predicted Gene

Lj2g3v3222880.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3222880.1 tr|Q9LPT2|Q9LPT2_ARATH F11F12.6 protein
OS=Arabidopsis thaliana GN=F11F12.6 PE=4 SV=1,52.27,3e-17,PHD zinc
finger,Zinc finger, PHD-type; seg,NULL; FYVE/PHD zinc finger,Zinc
finger, FYVE/PHD-type; no,CUFF.39893.1
         (994 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50620.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   286   3e-77
AT3G20280.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   255   1e-67
AT3G20280.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...   141   2e-33

>AT1G50620.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:18748537-18751005 FORWARD LENGTH=629
          Length = 629

 Score =  286 bits (733), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 245/474 (51%), Gaps = 93/474 (19%)

Query: 33  KKPKLDEPNPNLDDGGAGGELKRIAEIVLVLSTMAAMRAGRKPTGVEVDLMREARTKLAH 92
           KKP+ DE            E+ R+AEIVLVLS +  +R G+ PT +E+DLM EA++KL  
Sbjct: 33  KKPRFDE------------EVNRVAEIVLVLSALRKIRGGKPPTELEIDLMVEAKSKLVD 80

Query: 93  LCQGIAPKDIVASEAIGAVIEDLGFNAKFKDQRLGFRTPKMSIAERYSHAKWKMEEAKKF 152
           +CQ   PKDI+  +AIGAVIEDLGFN K KDQRLGFR PK++I+E+ S  K KMEE KK 
Sbjct: 81  MCQEFTPKDIIGVDAIGAVIEDLGFNGKLKDQRLGFRAPKLTISEKLSLGKRKMEELKKN 140

Query: 153 SAPSTTYASQPLQTSIGGTVDNRVPTHTVRMIASDKSSHAAIPSTGTVMSIPPQVSVGSS 212
              STT  S                                 P+   V            
Sbjct: 141 PVVSTTSTS---------------------------------PAVNNV------------ 155

Query: 213 AALQYQSTSNEVRPPVVPGVISSTHLGRNPSSVALPKVEHSQFKVG---GGSNGPPYVLQ 269
            ++ +Q  ++E++        S +H  R  S +   ++E  QFK     G S GP     
Sbjct: 156 -SMAHQWPNSEMKASASSVNASGSHYVREASGITQARMERPQFKSDLHTGTSQGPAV--- 211

Query: 270 VQANSSANQPLVNAPTWXX---XXXXXXXXXXXXENKVPTLNSAKVEVAADVTISRAGPQ 326
                 A     N  TW                 ++KVP  +S+++              
Sbjct: 212 -----PAGNYFGNTTTWSAQPHSSTSTISFGTASDSKVPVPSSSRI-------------- 252

Query: 327 ITTDQSFRPFTTQTVPVNLSIMHQPLQGMNRVQAPV-IPSHADIAKIVQKVLLPKLPDHP 385
             +D SFRPF +QT P     M     G  +  +P    +HA+IAK++ KVL P+   + 
Sbjct: 253 --SDPSFRPFMSQTPPGAFPGMKGATYG--QTSSPFGNNNHAEIAKLIHKVLQPRAKQNL 308

Query: 386 TWTPPSRDYMNKGLTCQICEVTVNEVDTVLLCDACEKGFHLKCLPPSVLRGIHNRVDWYC 445
            W PPSR+YM+K +TCQIC+ T+NE++TVL+CDACEKG+HLKCL    ++G+  + +W+C
Sbjct: 309 LWNPPSREYMSKAMTCQICQGTINEIETVLICDACEKGYHLKCLHAHNIKGVP-KSEWHC 367

Query: 446 MKCLGLSGGKPLPPKYGRVMRSSNTPPKLPSNTDTIQPSSEKEAGSIDPQVSQQ 499
            +C+ L  GK  PPKYGRVMRS+ T  K+ S+T  +Q  +EK  G +D +VSQ+
Sbjct: 368 SRCVQLYNGKSFPPKYGRVMRSATT-AKMSSSTAEVQLPAEKGVGKMDQKVSQE 420


>AT3G20280.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:7071475-7074340 FORWARD LENGTH=743
          Length = 743

 Score =  255 bits (651), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 235/470 (50%), Gaps = 94/470 (20%)

Query: 32  SKKPKLDEPNPNLDDGGAGGELKRIAEIVLVLSTMAAMRAGRKPTGVEVDLMREARTKLA 91
           +KKP+ DE            E+ R+AEIVLVLS +  MR G  PT +E++LM EAR+KLA
Sbjct: 30  AKKPRFDE------------EMNRVAEIVLVLSALGRMRGGETPTALELELMFEARSKLA 77

Query: 92  HLCQGIAPKDIVASEAIGAVIEDLGFNAKFKDQRLGFRTPKMSIAERYSHAKWKMEEAKK 151
            +C    PKDI+  + + +VIEDLGFN K KDQRLGFR P ++I+E+ S  K KMEEA+K
Sbjct: 78  GMCLEFDPKDIIRKDDVKSVIEDLGFNGKLKDQRLGFRAPTVTISEKLSLGKRKMEEAEK 137

Query: 152 FSAPSTTYASQPLQTSIGGTVDNRVPTHTVRMIASDKSSHAAIPSTGTVMSIPPQVSVGS 211
           +   ST         S G T+                  + ++ S G          + +
Sbjct: 138 YPTTSTV--------STGYTLSQ---------------PNGSLASPG---------GLAN 165

Query: 212 SAALQYQSTSNEVRPPVVPGVISSTHLGRNPSSVALPKVEHSQFKVGGGSNGPPYVLQVQ 271
            A++ +Q  S+EV         S +H           K++  Q  + G S G P      
Sbjct: 166 KASVAHQWPSSEV----ATANTSGSHF----------KLDRPQMVLNGASQGTPV----- 206

Query: 272 ANSSANQPLVNAPTWXXXXXXXXXXXXXXENKVPTLNSAKVEVAADVTISRAGPQITTDQ 331
             SSAN     A  W              + KVP  +S +                T D 
Sbjct: 207 --SSAN---YYAEPWSAQLPSTISFSTAPDKKVPIQSSVR----------------TADP 245

Query: 332 SFRPFTTQTVPVNLSIMHQPLQGMNRVQAPVIP-SHADIAKIVQKVLLPKLPDHPTWTPP 390
           SFRPF   T     +  +QP   M+  Q      +H +IAKI+ K L P++  +P W PP
Sbjct: 246 SFRPFRHGT----FTGTNQP---MHYSQTSSFGGNHTEIAKIIHKFLQPRVKQYPLWNPP 298

Query: 391 SRDYMNKGLTCQICEVTVNEVDTVLLCDACEKGFHLKCLPPSVLRGIHNRVDWYCMKCLG 450
           SR+YM++ + CQICEVT+NE+DT+L+CDACEK +HLKCL  + ++G+  + +W+C +C+ 
Sbjct: 299 SREYMSRAMACQICEVTINEMDTLLICDACEKAYHLKCLQGNNMKGVP-KSEWHCSRCVQ 357

Query: 451 LSGGKPLPPKYG-RVMRSSNTPPKLPSNTDTIQPSSEKEAGSIDPQVSQQ 499
              GKP PP YG      + T  K+P     +  SS K+ G +D + +QQ
Sbjct: 358 AFNGKPFPPTYGRATRAVATTTAKMPFRAAGVLSSSAKKIGPMDIKANQQ 407


>AT3G20280.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:7072892-7074340 FORWARD LENGTH=482
          Length = 482

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 90/135 (66%), Gaps = 2/135 (1%)

Query: 366 HADIAKIVQKVLLPKLPDHPTWTPPSRDYMNKGLTCQICEVTVNEVDTVLLCDACEKGFH 425
           H +IAKI+ K L P++  +P W PPSR+YM++ + CQICEVT+NE+DT+L+CDACEK +H
Sbjct: 13  HTEIAKIIHKFLQPRVKQYPLWNPPSREYMSRAMACQICEVTINEMDTLLICDACEKAYH 72

Query: 426 LKCLPPSVLRGIHNRVDWYCMKCLGLSGGKPLPPKYG-RVMRSSNTPPKLPSNTDTIQPS 484
           LKCL  + ++G+  + +W+C +C+    GKP PP YG      + T  K+P     +  S
Sbjct: 73  LKCLQGNNMKGVP-KSEWHCSRCVQAFNGKPFPPTYGRATRAVATTTAKMPFRAAGVLSS 131

Query: 485 SEKEAGSIDPQVSQQ 499
           S K+ G +D + +QQ
Sbjct: 132 SAKKIGPMDIKANQQ 146