Miyakogusa Predicted Gene

Lj2g3v3210780.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3210780.1 tr|A4RSJ3|A4RSJ3_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901) GN=Z PE=4
SV=1,29.75,8e-18,no description,Trigger factor, ribosome-binding,
bacterial; seg,NULL; Trigger factor ribosome-bindin,CUFF.39890.1
         (257 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55220.1 | Symbols:  | trigger factor type chaperone family p...   237   4e-63

>AT5G55220.1 | Symbols:  | trigger factor type chaperone family
           protein | chr5:22397677-22400678 FORWARD LENGTH=547
          Length = 547

 Score =  237 bits (605), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/218 (51%), Positives = 153/218 (70%)

Query: 40  SNSFKLSSLTPHIHLFQPFIHHHXXXXXXXXXXXXXXXXXEKDRLPADLIVTETEESNSR 99
           S    +S ++  I  F  F+ H                  ++D+LPADL VTET ++NS 
Sbjct: 48  SRPLDMSCVSRKIGFFGDFMSHGGNFRLFAAASPAVETSVKEDKLPADLKVTETVQANSS 107

Query: 100 VRLHVEVPPLVCEDCYNTVIAEFTKQAKIPGFRPGKKVPESILISYVGKKNVQGATIESI 159
           V+L VEVP +VCEDCY  V+ EF K +K+PGFRP  +VPE+I++ +VG++ V  AT+ESI
Sbjct: 108 VKLSVEVPEIVCEDCYQRVLTEFMKLSKVPGFRPKTRVPENIIVGFVGRQYVLRATVESI 167

Query: 160 LKRTLSHAMESVTGRALQDSVRIVTKFSDMEETYSSLGFLRYDVIVDVAPEIKWISDNAY 219
           LKRTL HAMESVTGRAL+DS++IV+ F DME+ YS L  L Y+V+VDV PE+KW  ++ Y
Sbjct: 168 LKRTLPHAMESVTGRALKDSIQIVSSFPDMEKAYSKLKTLSYEVVVDVVPELKWNPEDGY 227

Query: 220 KNLKIVVELDSDIDAHKASEQVFRRRYKSTGALKVVTD 257
           KN+K+VVEL  +IDA KA E+  R++YKS GALK+VT+
Sbjct: 228 KNMKVVVELGDEIDAKKACERQLRQKYKSLGALKIVTE 265