Miyakogusa Predicted Gene

Lj2g3v3209580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3209580.2 Non Chatacterized Hit- tr|B4FN51|B4FN51_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,71.01,3e-19,GrpE,GrpE
nucleotide exchange factor; GRPE PROTEIN, MITOCHONDRIAL,NULL; GRPE
PROTEIN,GrpE nucleotide,CUFF.39870.2
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55200.1 | Symbols:  | Co-chaperone GrpE family protein | chr...    90   7e-19
AT4G26780.1 | Symbols: AR192 | Co-chaperone GrpE family protein ...    87   7e-18

>AT5G55200.1 | Symbols:  | Co-chaperone GrpE family protein |
           chr5:22394705-22396335 FORWARD LENGTH=302
          Length = 302

 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/203 (33%), Positives = 97/203 (47%), Gaps = 33/203 (16%)

Query: 1   MFVNKLLTRISRTVSRTSLLSASQRPQQ---------FHSLLPQSPNKLISAQANLLCPT 51
           M V+++L+R+SR+    S  S+   P++         FHSL+  +PNKL++   +L    
Sbjct: 1   MLVSRVLSRVSRSAGLRSSFSSVVTPKRNQIPIVASRFHSLVHGTPNKLVAVPVSLRNHG 60

Query: 52  ISSLT--PRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXX 109
              L    RFGF SS             +  G+ S  +  KT E ++ V+  G+A     
Sbjct: 61  TLDLNVLQRFGFFSSSSA----------EPKGNESNTEVPKTGETSENVEV-GKATDAEI 109

Query: 110 XXXXXXXXXXXXXCDLSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRTYAEMENIKDRT 169
                         DLSR+DL+                   M DK LRTYAE +N+ DRT
Sbjct: 110 DFD-----------DLSRDDLVKLVSEKEDLLKVQQKDIMEMKDKFLRTYAEQQNLMDRT 158

Query: 170 RREAENSKKFAIQNFAKSLLDVA 192
            R AE++KKFA+QNFA SLLDVA
Sbjct: 159 NRNAESAKKFAVQNFATSLLDVA 181


>AT4G26780.1 | Symbols: AR192 | Co-chaperone GrpE family protein |
           chr4:13485066-13486560 REVERSE LENGTH=327
          Length = 327

 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 95/214 (44%), Gaps = 30/214 (14%)

Query: 1   MFVNKLLTRISRTVSRTSLLSASQRP---------QQFHSLLPQSPNKLISAQANLLCPT 51
           M V ++L+R++R     S LSA   P          +FHSL     +KL+ AQ +++   
Sbjct: 1   MLVLRILSRVTRNAGIRSSLSAVTLPARNQTPVFSSRFHSLAHDFSHKLVPAQMSMMD-- 58

Query: 52  ISSLTPRFGFSSSPXXXXXXXXXXXHQHNGSSSTDDPIKTSEEAKKVDQDGQAKPVXXXX 111
            S    RF FSSS            H     +S + P   + EA +   D ++K      
Sbjct: 59  -SFALQRFNFSSS--TSPESDEKKTHTEASKTSEEKP---TAEANQPGLDSESKDSVTDS 112

Query: 112 XXXXXXXXXXXCD-------------LSREDLIXXXXXXXXXXXXXXXXXXXMHDKVLRT 158
                                     LS +DL+                   + DKVLRT
Sbjct: 113 AKRKRKGAKGAASSSSESDSESDDDELSADDLVKLVAEKEELLSEKEEEIKQLKDKVLRT 172

Query: 159 YAEMENIKDRTRREAENSKKFAIQNFAKSLLDVA 192
           YAEMEN+ DRTRR+AEN+KK+A+QNFAKSLLDVA
Sbjct: 173 YAEMENVMDRTRRDAENTKKYAVQNFAKSLLDVA 206