Miyakogusa Predicted Gene

Lj2g3v3188410.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3188410.1 Non Chatacterized Hit- tr|I3SWY8|I3SWY8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.41,0,Rcd1,Cell
differentiation, Rcd1-like; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Cell differentiation,CUFF.39850.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20800.1 | Symbols:  | Cell differentiation, Rcd1-like protei...   385   e-107
AT5G12980.1 | Symbols:  | Cell differentiation, Rcd1-like protei...   358   3e-99
AT2G32550.1 | Symbols:  | Cell differentiation, Rcd1-like protei...   117   1e-26

>AT3G20800.1 | Symbols:  | Cell differentiation, Rcd1-like protein |
           chr3:7271412-7273897 REVERSE LENGTH=316
          Length = 316

 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/321 (62%), Positives = 242/321 (75%), Gaps = 14/321 (4%)

Query: 1   MANLPQSLSITA-----STSSQ-PRNT-AVKDRETVATERIVVQLILELSNPDHRENALH 53
           MANLP SLS+       STS+Q P    A KDR   + E    QL+L+LSNP+ RENAL 
Sbjct: 1   MANLPSSLSMGTPFGGPSTSAQNPTGAPANKDRNLASAE----QLVLDLSNPELRENALL 56

Query: 54  ELSKKREVVQDLAPLIWNSFGTIAALLQEITSVYPVISPPTLSPAQSNRVCNALALLQYV 113
           ELSKKRE+ QDLAPL+WNSFGTIAALLQEI S+Y V++PP L+PAQSNRVCN+LALLQ V
Sbjct: 57  ELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAPPNLTPAQSNRVCNSLALLQCV 116

Query: 114 ASHRDTRXXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLS 173
           ASH DTR             PFL TTSK++PFEYLRLTSLGVIGALVKV+D E+ISFLLS
Sbjct: 117 ASHSDTRMLFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLS 176

Query: 174 TEIIPLCLHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFL 233
           TEIIPLCL TME+G+ LSKTV+TFI+Q++L   VG +Y+    +RFFA+G+VLG +V  L
Sbjct: 177 TEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAERFFAVGRVLGNMVQSL 236

Query: 234 VEQPSIRLLKHVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLL 293
           VEQPS RLLKH+IRCYL LS++ R   AL+SCLP+  RDG+FSN LREDP   R+LQQL+
Sbjct: 237 VEQPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNCLREDPTARRWLQQLV 296

Query: 294 HK--VNQVPAPQAGEGYNHMM 312
           H   V +VP  Q G G+ HM+
Sbjct: 297 HNVGVGRVPTHQGG-GFEHML 316


>AT5G12980.1 | Symbols:  | Cell differentiation, Rcd1-like protein |
           chr5:4105562-4108139 REVERSE LENGTH=311
          Length = 311

 Score =  358 bits (919), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 233/316 (73%), Gaps = 9/316 (2%)

Query: 1   MANLPQSLSITA---STSSQPRNTAVKDRETVATERIVVQLILELSNPDHRENALHELSK 57
           MANLP  LS+ +   S +S P +++  DR+  + E    QLIL+LSNP+ RENALHELSK
Sbjct: 1   MANLPPPLSMKSVALSGASSPSSSSNNDRKLSSAE----QLILDLSNPELRENALHELSK 56

Query: 58  KREVVQDLAPLIWNSFGTIAALLQEITSVYPVISPPTLSPAQSNRVCNALALLQYVASHR 117
           KRE+ QDLAPL+W+S GTI ALLQEI +VYP +SPPT++PAQSNRVCNALALLQ VASH 
Sbjct: 57  KREIFQDLAPLLWHSVGTIPALLQEIIAVYPALSPPTMTPAQSNRVCNALALLQCVASHT 116

Query: 118 DTRXXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALVKVEDVEIISFLLSTEII 177
           DTR              FL T+SK++PFEYLRLTSLGVIGALVKV+D E+I FLL TEI+
Sbjct: 117 DTRMLFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGALVKVDDTEVIRFLLQTEIV 176

Query: 178 PLCLHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRFFAIGQVLGKVVAFLVEQP 237
           PLCL TME G+ LSKTV+TFI+Q+VL   VG EY+    +RFFA+G+VLG +V  L E P
Sbjct: 177 PLCLRTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTAERFFALGRVLGNMVTSLAEGP 236

Query: 238 SIRLLKHVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSNLLREDPDLMRFLQQLLHKVN 297
           S RLLKH+IRCYL L+++ R  +AL SCLP++ RD TFS  L +DP  M++LQQLLH VN
Sbjct: 237 SARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGCLYDDPPAMQWLQQLLHNVN 296

Query: 298 QVPAPQAGEGYNHMMV 313
                +A +G  HM V
Sbjct: 297 V--GGRAPQGLAHMFV 310


>AT2G32550.1 | Symbols:  | Cell differentiation, Rcd1-like protein |
           chr2:13819406-13822600 FORWARD LENGTH=322
          Length = 322

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 145/306 (47%), Gaps = 26/306 (8%)

Query: 1   MANLPQSL-------SITASTSSQPRNTAVKDRETVA---TERIVVQLILELSNPDH--R 48
           M NLP SL        +T+ +++   ++A   R +V    T  +++Q + ++  P     
Sbjct: 5   MVNLPDSLYEDYSKLKLTSPSNASSSSSAPPPRLSVVAHPTVEMIIQWVCDIHKPKSYMS 64

Query: 49  ENALHELSKKREVVQDLAPLIWNSFGTIAALLQEITSVYPVIS--------PPTLSPAQS 100
           + ALH L+  R   + L  L+W S  T+  +LQE+   Y  ++        P  L+P   
Sbjct: 65  DFALHNLAYHRNDFEFLPSLLWESKNTVYIMLQEVFEAYRHLAGHISLRLFPHPLNPL-- 122

Query: 101 NRVCNALALLQYVASHRDTRXXXXXXXXXXXXXPFLKTTSKAKPFEYLRLTSLGVIGALV 160
            RV N   L Q +A H DT              P + T    K  E +RL +LGVI  ++
Sbjct: 123 -RVYNVFLLFQSMACHPDTSRQFLRAKMPNYFYPLMDTGLIDKSDECMRLAALGVIAHML 181

Query: 161 KV-EDVEIISFLLSTEIIPLCLHTMEIGTVLSKTVSTFIIQRVLSHHVGKEYVFARPDRF 219
           K  ED  +  +L+ + ++  C+  +E G+  +K V+ +I+ +++S   G  Y     DRF
Sbjct: 182 KASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMSTDQGLYYCCVLADRF 241

Query: 220 FAIGQVLGKVVAFLVE--QPSIRLLKHVIRCYLLLSEHWRGVEALSSCLPEMFRDGTFSN 277
           + I ++L KV+ +L    +P   L   V  CY+ LS++ R    +    P +  DGTFS 
Sbjct: 242 YVIDELLKKVLFYLSNMVRPPSSLFSLVTGCYVKLSQNSRARNGIRRYTPFLLFDGTFSR 301

Query: 278 LLREDP 283
           L  EDP
Sbjct: 302 LYAEDP 307