Miyakogusa Predicted Gene
- Lj2g3v3188380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3188380.1 Non Chatacterized Hit- tr|D7MKV0|D7MKV0_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,28.87,0.000000000003,Ribonuclease III family,Ribonuclease III
domain; Double-stranded RNA binding motif,Double-stranded
R,CUFF.39849.1
(339 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2... 337 6e-93
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60... 177 1e-44
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO... 177 1e-44
AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 | chr5:... 164 1e-40
AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 | chr4:882... 135 5e-32
AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 125 3e-29
AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 125 3e-29
AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:157535... 125 3e-29
AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-686906... 118 7e-27
AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 | chr5:685957... 117 8e-27
AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525 ... 112 3e-25
AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833 ... 112 3e-25
AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 | chr3:768020... 112 3e-25
>AT3G20420.1 | Symbols: RTL2, ATRTL2 | RNAse THREE-like protein 2 |
chr3:7119371-7120895 REVERSE LENGTH=391
Length = 391
Score = 337 bits (865), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 171/334 (51%), Positives = 230/334 (68%), Gaps = 5/334 (1%)
Query: 7 AVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANPSLDPG 66
AVE IL Y F NK LL+EA+TH+S T SYERLEFIGD +GLAISNYLYL PSL+P
Sbjct: 62 AVEKILNYKFSNKSLLKEAITHTSCTDFPSYERLEFIGDSAIGLAISNYLYLTYPSLEPH 121
Query: 67 QLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDR-TVCYGGIV 125
LSLLRAANVSTEKLARV++ G+Y +R N+ L +KV+EF A+ ED +V YGG+V
Sbjct: 122 DLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKEDDLSVSYGGLV 181
Query: 126 KAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFEICQ 185
KAPKVLAD+ ES+A AVY+D+ FDLQ LWVI RGLLEPIVTLDDL+ PQPV+MLF++C
Sbjct: 182 KAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKLCH 241
Query: 186 KNGKQVDIKYWRDSDKSIAGVFVDGQIVASASSDQKDIXXXXXXXXXXXXXXXXXPSSTM 245
K+ K++DIK W+D + SIA +++D +++AS ++ KDI P +
Sbjct: 242 KHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFPVEMV 301
Query: 246 TFDFCASIDGTFEIDVAKHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSVQIPTTPH 305
+ I T AK +L+E+C+ KKW KP+YS+ +D K ++CS +I T
Sbjct: 302 IDEDSVEIQLTH----AKTKLNEICLKKKWPKPIYSVEEDRSSVQGKRFVCSAKIKITEE 357
Query: 306 GPLQMFGEEKSRLKDAENSAASFMIRALQERNFI 339
L M G+E+S++K AE+S+A MIRAL++ +++
Sbjct: 358 KTLYMKGDEQSKIKKAESSSAYHMIRALRKSHYL 391
>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1909
Length = 1909
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 177/349 (50%), Gaps = 21/349 (6%)
Query: 6 VAVENILRYSFKNKKLLEEALTHSS--FTGATSYERLEFIGDPILGLAISNYLYLANPSL 63
V +E L+Y FK K LL EA+TH+S +G + Y+RLEF+GD +L I+ +L+ SL
Sbjct: 1560 VGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSL 1619
Query: 64 DPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYG- 122
PG+L+ LRAA V+ E ARVA++ ++ ++RH S L ++REFV + E +
Sbjct: 1620 PPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNS 1679
Query: 123 ---GIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTM 179
G KAPKVL DIVES+A A+++D G D W + + LL+P+VT + L + PV
Sbjct: 1680 FGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH--PVRE 1737
Query: 180 LFEICQKNGKQVDIKYWRDSDKSIAGVFVDGQIVASASSDQKDIXXXXXXXXXXXXXXXX 239
L E CQ+ + ++ K R + + VF+DG V A + QK +
Sbjct: 1738 LQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEK 1797
Query: 240 XPSSTMTFDFCASIDGTFEID------------VAKHRLHELCVMKKWSKPVYSIRKDEG 287
+ + G + + + L+++C+ K W P Y K+ G
Sbjct: 1798 EIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGG 1857
Query: 288 PPHEKIYLCSVQIPTTPHGPL-QMFGEEKSRLKDAENSAASFMIRALQE 335
P H K + V++ T+ G + GE +K A++SAA ++ L +
Sbjct: 1858 PAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNK 1906
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 6 VAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANPSLDP 65
V ++N++ Y K+LE ALT +S YER E +GD L +S +L+L P
Sbjct: 1344 VQLKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHE 1402
Query: 66 GQLSLLRAANVSTEKLARVAIRSGIYRHVR 95
GQL+ +R VS L + A+ G+ +++
Sbjct: 1403 GQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1432
>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
LENGTH=1910
Length = 1910
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/349 (32%), Positives = 177/349 (50%), Gaps = 21/349 (6%)
Query: 6 VAVENILRYSFKNKKLLEEALTHSS--FTGATSYERLEFIGDPILGLAISNYLYLANPSL 63
V +E L+Y FK K LL EA+TH+S +G + Y+RLEF+GD +L I+ +L+ SL
Sbjct: 1561 VGLERALKYEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSL 1620
Query: 64 DPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYG- 122
PG+L+ LRAA V+ E ARVA++ ++ ++RH S L ++REFV + E +
Sbjct: 1621 PPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNS 1680
Query: 123 ---GIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTM 179
G KAPKVL DIVES+A A+++D G D W + + LL+P+VT + L + PV
Sbjct: 1681 FGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMH--PVRE 1738
Query: 180 LFEICQKNGKQVDIKYWRDSDKSIAGVFVDGQIVASASSDQKDIXXXXXXXXXXXXXXXX 239
L E CQ+ + ++ K R + + VF+DG V A + QK +
Sbjct: 1739 LQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEK 1798
Query: 240 XPSSTMTFDFCASIDGTFEID------------VAKHRLHELCVMKKWSKPVYSIRKDEG 287
+ + G + + + L+++C+ K W P Y K+ G
Sbjct: 1799 EIAESKEKHINNGNAGEDQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGG 1858
Query: 288 PPHEKIYLCSVQIPTTPHGPL-QMFGEEKSRLKDAENSAASFMIRALQE 335
P H K + V++ T+ G + GE +K A++SAA ++ L +
Sbjct: 1859 PAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLELLNK 1907
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 6 VAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANPSLDP 65
V ++N++ Y K+LE ALT +S YER E +GD L +S +L+L P
Sbjct: 1345 VQLKNLISYPIPTSKILE-ALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHE 1403
Query: 66 GQLSLLRAANVSTEKLARVAIRSGIYRHVR 95
GQL+ +R VS L + A+ G+ +++
Sbjct: 1404 GQLTRMRQQMVSNMVLYQFALVKGLQSYIQ 1433
>AT5G45150.1 | Symbols: RTL3 | RNAse THREE-like protein 3 |
chr5:18260441-18264346 FORWARD LENGTH=957
Length = 957
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 142/226 (62%), Gaps = 11/226 (4%)
Query: 1 MEAAVVAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLAN 60
M+++V AVE IL YSF NK LL+E LTH++ + ++ L F+G+ L LA + +LYL
Sbjct: 411 MDSSVEAVEKILNYSFVNKTLLKELLTHNN---SPLFQGLMFVGESALSLAFTKHLYLTY 467
Query: 61 PSLDPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVR-EFVVAIAGEDRTV 119
P L+P LS+LR AN +K A VA++ GIY+ SVP +K+ +F+ + ED
Sbjct: 468 PMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFI-GSVPKPEKMTTDFIELMGKEDDPY 526
Query: 120 CYGGIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHN-PQPVT 178
+VKAPK+L +++ VA AVYID+ +++Q L I R LLEPI TLDDL QP
Sbjct: 527 ---RVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPFL 583
Query: 179 MLFEICQKNGKQVDIKYWRD--SDKSIAGVFVDGQIVASASSDQKD 222
MLF + K+GKQ+D +Y +D S K+IA V++D +AS + + D
Sbjct: 584 MLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRID 629
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 119/188 (63%), Gaps = 5/188 (2%)
Query: 4 AVVAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANPSL 63
+V AVE IL YSF NK LL+EA+T S ++RLEF GD IL +A +NY+ P+L
Sbjct: 3 SVEAVEKILNYSFVNKTLLKEAITQKS----PLFDRLEFFGDSILEVAFTNYICHTYPNL 58
Query: 64 DPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYGG 123
+L LR ANVS EK AR+A+ ++ + + L KV+ F A+ ED V YGG
Sbjct: 59 KVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVPYGG 118
Query: 124 IVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQ-PVTMLFE 182
+VKAPK+LAD +ES+AA V+ID+ +D++ LW I R LLEPI T DDL P+ P LF
Sbjct: 119 LVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLFR 178
Query: 183 ICQKNGKQ 190
+ K+G +
Sbjct: 179 LADKHGSE 186
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 262 AKHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSV--QIPTTPHGPLQMFGEEKSRLK 319
+ L E+C KW +P++S+++++GP +E ++CSV +IP G M G+ KS+ K
Sbjct: 308 GRGELIEICTKNKWPRPIFSVQEEKGPKNEPKFVCSVKIEIPNI-EGTFHMKGDIKSKKK 366
Query: 320 DAENSAASFMIRALQ 334
AENS A MIRAL+
Sbjct: 367 QAENSLAYHMIRALE 381
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 263 KHRLHELCVMKKWSKPVYSIRKDEGPPHEKIYLCSV--QIPTTPHGPLQMFGEEKSRLKD 320
K +L E+C KW P++S+ ++ G +E+ +CSV +IP G + G+ K K+
Sbjct: 839 KGKLFEICAKNKWPNPIFSVEEERGQQNEQKIVCSVKIEIPNI-EGTFHIKGDAKPTKKE 897
Query: 321 AENSAASFMIRALQ 334
AENS+A MIRAL+
Sbjct: 898 AENSSADHMIRALE 911
>AT4G15417.1 | Symbols: ATRTL1, RTL1 | RNAse II-like 1 |
chr4:8821759-8822991 FORWARD LENGTH=264
Length = 264
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 8/198 (4%)
Query: 5 VVAVENILRYSFKNKKLLEEALTHSSFTG--ATSYERLEFIGDPILGLAISNYLYLANPS 62
+ ++E IL Y FK+K LL +A T +S+ + SYE LE +GD IL + I P
Sbjct: 29 IESLEKILNYKFKDKSLLLKAFTDASYVDDKSESYELLELLGDSILNMGIIYDFIKLYPK 88
Query: 63 LDPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYG 122
PG L+ LRA NV TEKLARVA+ +Y ++RH L +++ EFV A+ E +
Sbjct: 89 EAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAM--EKYPLHSN 146
Query: 123 GIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFE 182
G++K PKVLADIVES A+++D + +W +I+ LLEPI+ LD ++ P+T L E
Sbjct: 147 GLLKVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPIIHLDKMK--SHPMTELNE 203
Query: 183 ICQK-NGKQVDIKYWRDS 199
+CQK N K W ++
Sbjct: 204 MCQKRNLKLTSKDTWEEN 221
>AT3G43920.2 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1580
Length = 1580
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 116/205 (56%), Gaps = 2/205 (0%)
Query: 2 EAAVVAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANP 61
E ++ +E +++ F K LL+EA+THSS + SYERLEF+GD +L I+ +L+
Sbjct: 1195 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1254
Query: 62 SLDPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCY 121
PG+++ LR+A V+ E A+VA+++ ++ H++ + L ++ +++++ D T
Sbjct: 1255 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1314
Query: 122 GGIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLF 181
++ PK L D+VES+A A+ ID DL +W + LL P+VT D L+ P L
Sbjct: 1315 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQL--PPYRELN 1372
Query: 182 EICQKNGKQVDIKYWRDSDKSIAGV 206
E+C G +K D K+ A +
Sbjct: 1373 ELCDSLGYFFRVKCSNDGVKAQATI 1397
>AT3G43920.1 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1531
Length = 1531
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 116/205 (56%), Gaps = 2/205 (0%)
Query: 2 EAAVVAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANP 61
E ++ +E +++ F K LL+EA+THSS + SYERLEF+GD +L I+ +L+
Sbjct: 1146 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1205
Query: 62 SLDPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCY 121
PG+++ LR+A V+ E A+VA+++ ++ H++ + L ++ +++++ D T
Sbjct: 1206 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1265
Query: 122 GGIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLF 181
++ PK L D+VES+A A+ ID DL +W + LL P+VT D L+ P L
Sbjct: 1266 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQL--PPYRELN 1323
Query: 182 EICQKNGKQVDIKYWRDSDKSIAGV 206
E+C G +K D K+ A +
Sbjct: 1324 ELCDSLGYFFRVKCSNDGVKAQATI 1348
>AT3G43920.3 | Symbols: DCL3, ATDCL3 | dicer-like 3 |
chr3:15753548-15760830 FORWARD LENGTH=1570
Length = 1570
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 116/205 (56%), Gaps = 2/205 (0%)
Query: 2 EAAVVAVENILRYSFKNKKLLEEALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANP 61
E ++ +E +++ F K LL+EA+THSS + SYERLEF+GD +L I+ +L+
Sbjct: 1185 EDELIELERKIQHEFSAKFLLKEAITHSSLRESYSYERLEFLGDSVLDFLITRHLFNTYE 1244
Query: 62 SLDPGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCY 121
PG+++ LR+A V+ E A+VA+++ ++ H++ + L ++ +++++ D T
Sbjct: 1245 QTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDYLMSFQKPDETGRS 1304
Query: 122 GGIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLF 181
++ PK L D+VES+A A+ ID DL +W + LL P+VT D L+ P L
Sbjct: 1305 IPSIQGPKALGDVVESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQL--PPYRELN 1362
Query: 182 EICQKNGKQVDIKYWRDSDKSIAGV 206
E+C G +K D K+ A +
Sbjct: 1363 ELCDSLGYFFRVKCSNDGVKAQATI 1387
>AT5G20320.2 | Symbols: DCL4 | dicer-like 4 | chr5:6859571-6869068
REVERSE LENGTH=1688
Length = 1688
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 102/181 (56%), Gaps = 4/181 (2%)
Query: 7 AVENILRYSFKNKKLLEEALTHSSFT--GATSYERLEFIGDPILGLAISNYLYLANPSLD 64
+EN L Y F +K LL +A H S+ G Y+RLEF+GD +L +++Y + P L
Sbjct: 1280 TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLK 1339
Query: 65 PGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYGGI 124
PGQL+ LR+ +V+ E LA VA+ + R + S+ L + + ++ +A
Sbjct: 1340 PGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEG 1399
Query: 125 VKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFEIC 184
+ PKVL D+VES A+++D GF+L ++W ++ L+P+ L +L+ P+ L E+C
Sbjct: 1400 PRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQ--ISPIKELIELC 1457
Query: 185 Q 185
Q
Sbjct: 1458 Q 1458
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 27/150 (18%)
Query: 24 EALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANPSLDPGQLSLLRAANVSTEKLAR 83
EALT S ERLE +GD L A+S +L+L + SLD G+L+ R+ V+ L R
Sbjct: 1091 EALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCR 1150
Query: 84 VAIRSGIYRHVR-------------HNSVPLVDKV---------REFVVAIAGEDRTVCY 121
+AI+ + ++R H D+V R+ + + C
Sbjct: 1151 LAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCS 1210
Query: 122 GG---IVKAPKVLADIVESVAAAVYIDLGF 148
G + K K +AD+VE++ A +D GF
Sbjct: 1211 KGHHWLYK--KTIADVVEALVGAFLVDSGF 1238
>AT5G20320.1 | Symbols: DCL4, ATDCL4 | dicer-like 4 |
chr5:6859571-6869068 REVERSE LENGTH=1702
Length = 1702
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/181 (34%), Positives = 102/181 (56%), Gaps = 4/181 (2%)
Query: 7 AVENILRYSFKNKKLLEEALTHSSFT--GATSYERLEFIGDPILGLAISNYLYLANPSLD 64
+EN L Y F +K LL +A H S+ G Y+RLEF+GD +L +++Y + P L
Sbjct: 1294 TLENQLDYKFLHKGLLVQAFIHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLK 1353
Query: 65 PGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYGGI 124
PGQL+ LR+ +V+ E LA VA+ + R + S+ L + + ++ +A
Sbjct: 1354 PGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPLASGQSEG 1413
Query: 125 VKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFEIC 184
+ PKVL D+VES A+++D GF+L ++W ++ L+P+ L +L+ P+ L E+C
Sbjct: 1414 PRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQ--ISPIKELIELC 1471
Query: 185 Q 185
Q
Sbjct: 1472 Q 1472
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 27/150 (18%)
Query: 24 EALTHSSFTGATSYERLEFIGDPILGLAISNYLYLANPSLDPGQLSLLRAANVSTEKLAR 83
EALT S ERLE +GD L A+S +L+L + SLD G+L+ R+ V+ L R
Sbjct: 1105 EALTTEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCR 1164
Query: 84 VAIRSGIYRHVR-------------HNSVPLVDKV---------REFVVAIAGEDRTVCY 121
+AI+ + ++R H D+V R+ + + C
Sbjct: 1165 LAIKKNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCS 1224
Query: 122 GG---IVKAPKVLADIVESVAAAVYIDLGF 148
G + K K +AD+VE++ A +D GF
Sbjct: 1225 KGHHWLYK--KTIADVVEALVGAFLVDSGF 1252
>AT3G03300.2 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774525
REVERSE LENGTH=1374
Length = 1374
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 109/184 (59%), Gaps = 7/184 (3%)
Query: 8 VENILRYSFKNKKLLEEALTHSSFTGAT---SYERLEFIGDPILGLAISNYLYLANPSLD 64
+E++L YSF++K LL EALTH S+ Y+RLEF+GD +L I+ +LY P L
Sbjct: 1138 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1197
Query: 65 PGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYG-- 122
PG L+ +R+A+V+ E A VA+++ +++H+ + S L + V +G
Sbjct: 1198 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1257
Query: 123 GIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFE 182
+ PKVL D++ES+A A+++D G++ + ++ I+ LL ++T + ++ PV L E
Sbjct: 1258 SDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVK--LHPVRELTE 1315
Query: 183 ICQK 186
+CQK
Sbjct: 1316 LCQK 1319
>AT3G03300.3 | Symbols: DCL2 | dicer-like 2 | chr3:768020-774833
REVERSE LENGTH=1388
Length = 1388
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 109/184 (59%), Gaps = 7/184 (3%)
Query: 8 VENILRYSFKNKKLLEEALTHSSFTGAT---SYERLEFIGDPILGLAISNYLYLANPSLD 64
+E++L YSF++K LL EALTH S+ Y+RLEF+GD +L I+ +LY P L
Sbjct: 1152 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1211
Query: 65 PGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYG-- 122
PG L+ +R+A+V+ E A VA+++ +++H+ + S L + V +G
Sbjct: 1212 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1271
Query: 123 GIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFE 182
+ PKVL D++ES+A A+++D G++ + ++ I+ LL ++T + ++ PV L E
Sbjct: 1272 SDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVK--LHPVRELTE 1329
Query: 183 ICQK 186
+CQK
Sbjct: 1330 LCQK 1333
>AT3G03300.1 | Symbols: DCL2, ATDCL2 | dicer-like 2 |
chr3:768020-774833 REVERSE LENGTH=1388
Length = 1388
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 109/184 (59%), Gaps = 7/184 (3%)
Query: 8 VENILRYSFKNKKLLEEALTHSSFTGAT---SYERLEFIGDPILGLAISNYLYLANPSLD 64
+E++L YSF++K LL EALTH S+ Y+RLEF+GD +L I+ +LY P L
Sbjct: 1152 MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLS 1211
Query: 65 PGQLSLLRAANVSTEKLARVAIRSGIYRHVRHNSVPLVDKVREFVVAIAGEDRTVCYG-- 122
PG L+ +R+A+V+ E A VA+++ +++H+ + S L + V +G
Sbjct: 1212 PGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWE 1271
Query: 123 GIVKAPKVLADIVESVAAAVYIDLGFDLQNLWVIIRGLLEPIVTLDDLEHNPQPVTMLFE 182
+ PKVL D++ES+A A+++D G++ + ++ I+ LL ++T + ++ PV L E
Sbjct: 1272 SDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVK--LHPVRELTE 1329
Query: 183 ICQK 186
+CQK
Sbjct: 1330 LCQK 1333