Miyakogusa Predicted Gene

Lj2g3v3184230.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3184230.2 Non Chatacterized Hit- tr|D7LB00|D7LB00_ARALL
Putative uncharacterized protein OS=Arabidopsis lyrata,76.27,7e-19,DNA
repair protein MutS, domain III,DNA mismatch repair protein MutS,
core; MutS_III,DNA mismatch re,CUFF.39832.2
         (67 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 | chr3:71...    99   7e-22
AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | c...    50   4e-07

>AT3G20475.1 | Symbols: ATMSH5, MSH5 | MUTS-homologue 5 |
           chr3:7143546-7150811 FORWARD LENGTH=807
          Length = 807

 Score = 98.6 bits (244), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 53/59 (89%)

Query: 9   QCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           +C TPMGRRLLR+WF+RPILDLEVL+ RLN+ISFF+ S EL+ SLRETLKSVKDI HLL
Sbjct: 222 KCATPMGRRLLRSWFMRPILDLEVLDRRLNAISFFISSVELMASLRETLKSVKDISHLL 280


>AT3G24495.1 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 |
           chr3:8912418-8918086 REVERSE LENGTH=1109
          Length = 1109

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 10  CVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRETLKSVKDIPHLL 67
           CV+P G+RLLRNW   P+ D+E +N RL+ +  F  + E +    + L  + D+  LL
Sbjct: 585 CVSPTGKRLLRNWICHPLKDVESINKRLDVVEEFTANSESMQITGQYLHKLPDLERLL 642