Miyakogusa Predicted Gene

Lj2g3v3149380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3149380.1 Non Chatacterized Hit- tr|I3SHL6|I3SHL6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,97.73,2e-16,Tmemb_14,Uncharacterised protein family UPF0136,
Transmembrane,CUFF.40531.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20510.1 | Symbols:  | Transmembrane proteins 14C | chr3:7160...   140   2e-34
AT1G50740.1 | Symbols:  | Transmembrane proteins 14C | chr1:1880...   137   2e-33
AT3G57280.1 | Symbols:  | Transmembrane proteins 14C | chr3:2119...    61   1e-10

>AT3G20510.1 | Symbols:  | Transmembrane proteins 14C |
           chr3:7160884-7161991 FORWARD LENGTH=119
          Length = 119

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/119 (58%), Positives = 82/119 (68%)

Query: 1   MHDFCFTIPYGLLLVGGGAFGYIHKXXXXXXXXXXXXXXXXXXXXYISLNAFGKRKNSYF 60
           MHDFCFTIPYG+LL+GGG  GY+ K                    YISL AF K+KNS  
Sbjct: 1   MHDFCFTIPYGMLLIGGGFIGYMKKGSITSFAGGAGTGLLLILAGYISLKAFEKKKNSTI 60

Query: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAKAD 119
           A+ L+TV A ALT VMGQRY+ T K+MPAG+VAGIS LMT FY+YK+ATGGN  PAKA+
Sbjct: 61  AMVLQTVIAAALTLVMGQRYLLTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAKAE 119


>AT1G50740.1 | Symbols:  | Transmembrane proteins 14C |
           chr1:18807861-18808765 FORWARD LENGTH=119
          Length = 119

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/119 (55%), Positives = 81/119 (68%)

Query: 1   MHDFCFTIPYGLLLVGGGAFGYIHKXXXXXXXXXXXXXXXXXXXXYISLNAFGKRKNSYF 60
           MHDFCFTIPYG+LL+ GG  GY+ K                    +ISL AF K+K S  
Sbjct: 1   MHDFCFTIPYGILLIVGGFIGYLKKGSIASLAGGAGTGLLVVLAGFISLKAFEKKKTSLL 60

Query: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAKAD 119
           A  LETV A ALT+VMGQR+++T K+MPA +VAGIS LMT FY+YK+ATGGNH+P KA+
Sbjct: 61  ATLLETVIAAALTFVMGQRFLQTQKIMPAALVAGISALMTCFYVYKIATGGNHIPPKAE 119


>AT3G57280.1 | Symbols:  | Transmembrane proteins 14C |
           chr3:21193960-21195547 FORWARD LENGTH=226
          Length = 226

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 54/117 (46%)

Query: 1   MHDFCFTIPYGLLLVGGGAFGYIHKXXXXXXXXXXXXXXXXXXXXYISLNAFGKRKNSYF 60
           +HDFCF IPYG L+V GG  G+                        +SL  + + K+S+ 
Sbjct: 100 IHDFCFGIPYGGLVVSGGLLGFAFSRNLTSLSTGVLYGGGLLALSTLSLKIWREGKSSFP 159

Query: 61  ALFLETVCATALTWVMGQRYMETSKVMPAGVVAGISGLMTLFYLYKLATGGNHLPAK 117
            +  + V +  + W     Y  T K+ PAGV A IS  M  FY Y + +GGN  P K
Sbjct: 160 YILGQAVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKK 216