Miyakogusa Predicted Gene

Lj2g3v3149360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3149360.1 Non Chatacterized Hit- tr|I3SLZ9|I3SLZ9_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,64.58,0.00000000004, ,77514_g.1
         (84 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27020.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   3e-09
AT5G54870.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    57   3e-09
AT1G70160.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    49   5e-07

>AT4G27020.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; LOCATED IN: vacuole; BEST
          Arabidopsis thaliana protein match is: unknown protein
          (TAIR:AT5G54870.1); Has 1807 Blast hits to 1807
          proteins in 277 species: Archae - 0; Bacteria - 0;
          Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
          Other Eukaryotes - 339 (source: NCBI BLink). |
          chr4:13568604-13571381 REVERSE LENGTH=523
          Length = 523

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 41 PQYPQDLLPLLSKQVSWTIINSLHSAVDILPLYMGAASSPNQFI 84
          P +P+DLLPL  +QVSW ++NSL++AVD+LP ++G+AS  N  +
Sbjct: 28 PFHPRDLLPLFPRQVSWPVVNSLNTAVDLLPTFIGSASVRNDAV 71


>AT5G54870.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: vacuole;
          EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
          growth stages; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT4G27020.1); Has 1807 Blast
          hits to 1807 proteins in 277 species: Archae - 0;
          Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
          Viruses - 0; Other Eukaryotes - 339 (source: NCBI
          BLink). | chr5:22289149-22291604 FORWARD LENGTH=531
          Length = 531

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 36 QMLSSPQYPQDLLPLLSKQVSWTIINSLHSAVDILPLYMGAASSPNQ 82
          + + SP +P+DLLP L +QVSW I+NSL+ A D+LP ++G ASS N 
Sbjct: 31 ESVKSPFHPRDLLPHLPRQVSWPILNSLYGAADLLPTFIGTASSGND 77


>AT1G70160.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: 24 plant structures; EXPRESSED
          DURING: 15 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT4G27020.1);
          Has 108 Blast hits to 108 proteins in 20 species:
          Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
          Plants - 89; Viruses - 0; Other Eukaryotes - 19
          (source: NCBI BLink). | chr1:26420159-26422345 FORWARD
          LENGTH=523
          Length = 523

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 36 QMLSSPQYPQDLLPLLSKQVSWTIINSLHSAVDILPLYMGAASSPN 81
          Q L  P    D+LP+L +QVSW ++NS H+AVD+LP+++G+ +  N
Sbjct: 23 QSLKVPFSVNDVLPMLPRQVSWPVLNSFHNAVDLLPVFIGSVTPNN 68