Miyakogusa Predicted Gene

Lj2g3v3136010.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3136010.1 Non Chatacterized Hit- tr|I3KQQ7|I3KQQ7_ORENI
Uncharacterized protein OS=Oreochromis niloticus
GN=AP,29.82,0.00000007,Lipocalins,Calycin-like; LIPOCALIN,Lipocalin
conserved site; Lipocalin_2,Lipocalin/cytosolic fatty-a,CUFF.39792.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47860.1 | Symbols: CHL | chloroplastic lipocalin | chr3:1765...   355   1e-98

>AT3G47860.1 | Symbols: CHL | chloroplastic lipocalin |
           chr3:17656778-17658269 REVERSE LENGTH=353
          Length = 353

 Score =  355 bits (911), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 183/227 (80%)

Query: 4   RGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDREAPAIQVDTFCFHG 63
           RGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFD +  AI+VDTFC HG
Sbjct: 127 RGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDMKESAIRVDTFCVHG 186

Query: 64  GPDGYITGIRGRVQCVSXXXXXXXXXXXXXXXMIKEKCFLRFPTLPFIPKLPYDVIATDY 123
            PDGYITGIRG+VQCV                MIKEKCFLRFPT+PFIPKLPYDVIATDY
Sbjct: 187 SPDGYITGIRGKVQCVGAEDLEKSETDLEKQEMIKEKCFLRFPTIPFIPKLPYDVIATDY 246

Query: 124 DNFALVSGAKDRGFVQIYSRTPNPGTEFIERNKAYLENFGYDPSKIKDTPQDCEVSDSKL 183
           DN+ALVSGAKD+GFVQ+YSRTPNPG EFI + K YL  FGYDP KIKDTPQDCEV+D++L
Sbjct: 247 DNYALVSGAKDKGFVQVYSRTPNPGPEFIAKYKNYLAQFGYDPEKIKDTPQDCEVTDAEL 306

Query: 184 XXXXXXXXXXXXLTNQFPDIGLKAPIEFNPFTSVFDTFKKLVELYFK 230
                       LTNQFPD+GL+  ++F+PFTSVF+T KKLV LYFK
Sbjct: 307 AAMMSMPGMEQTLTNQFPDLGLRKSVQFDPFTSVFETLKKLVPLYFK 353