Miyakogusa Predicted Gene
- Lj2g3v3109470.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3109470.1 tr|Q9LXR8|Q9LXR8_ARATH At3g58840 OS=Arabidopsis
thaliana GN=T20N10_190 PE=2 SV=1,31,3e-18,coiled-coil,NULL;
seg,NULL,CUFF.39736.1
(305 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G06530.1 | Symbols: | Tropomyosin-related | chr1:2001625-200... 69 3e-12
AT3G58840.2 | Symbols: | Tropomyosin-related | chr3:21757499-21... 57 2e-08
AT3G58840.1 | Symbols: | Tropomyosin-related | chr3:21757499-21... 57 2e-08
>AT1G06530.1 | Symbols: | Tropomyosin-related |
chr1:2001625-2002596 FORWARD LENGTH=323
Length = 323
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 48/191 (25%)
Query: 18 LERERDELVAENVAKKEQIKKLTAELEE------------------------SRKMTDVI 53
LE + EL +N A +I+ LTAE+EE RK+ + I
Sbjct: 41 LESQNQELARDNDAINRKIESLTAEIEELRGAESKAKRKMGEMEREIDKSDEERKVLEAI 100
Query: 54 AARASDLETELSRLQHDMGSEMSAGEDARAKVAELTKAVGDKESRIXXXXXXXXXXXXXX 113
A+RAS+LETE++RLQH++ + + GE+A A+ +L + K I
Sbjct: 101 ASRASELETEVARLQHELITARTEGEEATAEAEKLRSEISQKGGGI-------------- 146
Query: 114 XXNEFLVKEVGELKKVAGENELKVRDFERKIGDLERKIGVFETKEVEERNKRIRVEEEVR 173
E L KEV L+ V ENE +++ +LE K+G E KE++E+NK+ R EEE+R
Sbjct: 147 ---EELEKEVAGLRTVKEENE-------KRMKELESKLGALEVKELDEKNKKFRAEEEMR 196
Query: 174 DKIDYQDKEIN 184
+KID ++KE++
Sbjct: 197 EKIDNKEKEVH 207
>AT3G58840.2 | Symbols: | Tropomyosin-related |
chr3:21757499-21758455 REVERSE LENGTH=318
Length = 318
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 54/193 (27%)
Query: 18 LERERDELVAENVAKKEQIKKLTAELEESRKMTDV------------------------- 52
+E + EL EN KE++++LT E+EE M DV
Sbjct: 32 MENKNQELTRENRELKERLERLTGEIEE---MKDVEAEMNQRFGEMEKEIEEYEEEKKAL 88
Query: 53 --IAARASDLETELSRLQHDMGSEMSAGEDARAKVAELTKAVGDKESRIXXXXXXXXXXX 110
I+ RA +LETE+S L D+ + ++ + +VAEL KA+ + ++
Sbjct: 89 EAISTRAVELETEVSNLHDDLITSLNGVDKTAEEVAELKKALAEIVEKL----------- 137
Query: 111 XXXXXNEFLVKEVGELKKVAGENELKVRDFERKIGDLERKIGVFETKEVEERNKRIRVEE 170
E KE L+K E E +VRD LERKIGV E +E+EE++K++R EE
Sbjct: 138 ------EGCEKEAEGLRKDRAEVEKRVRD-------LERKIGVLEVREMEEKSKKLRSEE 184
Query: 171 EVRDKIDYQDKEI 183
E+R+ D + +EI
Sbjct: 185 EMREIDDEKKREI 197
>AT3G58840.1 | Symbols: | Tropomyosin-related |
chr3:21757499-21758455 REVERSE LENGTH=318
Length = 318
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 54/193 (27%)
Query: 18 LERERDELVAENVAKKEQIKKLTAELEESRKMTDV------------------------- 52
+E + EL EN KE++++LT E+EE M DV
Sbjct: 32 MENKNQELTRENRELKERLERLTGEIEE---MKDVEAEMNQRFGEMEKEIEEYEEEKKAL 88
Query: 53 --IAARASDLETELSRLQHDMGSEMSAGEDARAKVAELTKAVGDKESRIXXXXXXXXXXX 110
I+ RA +LETE+S L D+ + ++ + +VAEL KA+ + ++
Sbjct: 89 EAISTRAVELETEVSNLHDDLITSLNGVDKTAEEVAELKKALAEIVEKL----------- 137
Query: 111 XXXXXNEFLVKEVGELKKVAGENELKVRDFERKIGDLERKIGVFETKEVEERNKRIRVEE 170
E KE L+K E E +VRD LERKIGV E +E+EE++K++R EE
Sbjct: 138 ------EGCEKEAEGLRKDRAEVEKRVRD-------LERKIGVLEVREMEEKSKKLRSEE 184
Query: 171 EVRDKIDYQDKEI 183
E+R+ D + +EI
Sbjct: 185 EMREIDDEKKREI 197