Miyakogusa Predicted Gene
- Lj2g3v3106340.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3106340.2 tr|C1MMR2|C1MMR2_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_3254,25.5,0.0000000000008,CROOKED NECK PROTEIN,NULL;
PRE-MRNA SPLICING FACTOR,NULL; TPR-like,NULL;
TPR_REGION,Tetratricopeptid,CUFF.39723.2
(414 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41770.1 | Symbols: | crooked neck protein, putative / cell ... 557 e-159
AT5G45990.1 | Symbols: | crooked neck protein, putative / cell ... 500 e-142
AT3G13210.1 | Symbols: | crooked neck protein, putative / cell ... 486 e-138
AT3G51110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 314 6e-86
AT4G03430.1 | Symbols: STA1, EMB2770 | pre-mRNA splicing factor-... 64 3e-10
AT5G28740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 63 4e-10
AT3G17040.1 | Symbols: HCF107 | high chlorophyll fluorescent 107... 54 2e-07
AT3G17040.2 | Symbols: HCF107 | high chlorophyll fluorescent 107... 54 2e-07
>AT5G41770.1 | Symbols: | crooked neck protein, putative / cell
cycle protein, putative | chr5:16718021-16720936 FORWARD
LENGTH=705
Length = 705
Score = 557 bits (1435), Expect = e-159, Method: Compositional matrix adjust.
Identities = 296/496 (59%), Positives = 334/496 (67%), Gaps = 84/496 (16%)
Query: 2 SSSREGDPNLGYLTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKL 61
S ++ D LGY+TRKDTEVKLPRPTRVKNKTPAPIQIT PPK
Sbjct: 3 SGGKDSDRTLGYMTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQ 62
Query: 62 KITDPHELGEYRLRKRKEFEDLIRRVRWNTSVWLKYAQWEVSQNDFKRAR---------- 111
KITD EL +YRLR+RKEFED IRR RWN VW+KYAQWE SQ D+ RAR
Sbjct: 63 KITDSTELSDYRLRRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAIEGD 122
Query: 112 ------------------------SVWERALEVDYKNHTLWLKYAEVE------------ 135
+VW+RA+ + + LW KY +E
Sbjct: 123 YRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQI 182
Query: 136 ---------------------MKNKFINHARNVWDRAVTLLPRIDQLWYKYIHMEEMLGN 174
++ I AR +++R V P++ + +Y E G
Sbjct: 183 FERWMDWSPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSA-YIRYAKFEMKGGE 241
Query: 175 VAGGRQVYERAVERLADDEEAEQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDL 234
VA R VYERA E+LADDEEAE LFVAFAEFEERCKE ERAR IYKFALDHIPKGRAEDL
Sbjct: 242 VARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDL 301
Query: 235 YRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEET-------- 286
YRKFVAFEKQYGD+EGIEDAIVGKRRFQYEDEVRK+P NYDSWFDY+RLEE+
Sbjct: 302 YRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIR 361
Query: 287 --------NVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKEGLNMIPHKKFS 338
NVPPAEEK YWQRYIYLWINYAL+EE++ D+ERTR+VY+E L +IPH KFS
Sbjct: 362 EIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECLKLIPHSKFS 421
Query: 339 FAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEK 398
FAK+WLLAAQFEIRQLNL GAR ILGNAIGKAPKDKIFKKYIEIELQLGN+DRCRKLYE+
Sbjct: 422 FAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYER 481
Query: 399 YLEWAPENCYAWSKYA 414
YLEW+PENCYAWSKYA
Sbjct: 482 YLEWSPENCYAWSKYA 497
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 162/344 (47%), Gaps = 48/344 (13%)
Query: 91 TSVWLKYAQWEVSQNDFKRARSVWERALEV---DYKNHTLWLKYAEVEMKNKFINHARNV 147
S +++YA++E+ + R RSV+ERA E D + L++ +AE E + K + AR +
Sbjct: 226 VSAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFI 285
Query: 148 WDRAVTLLP--RIDQLWYKYIHMEEMLGN-------VAGGRQV-YERAVERLADDEEAEQ 197
+ A+ +P R + L+ K++ E+ G+ + G R+ YE V + + ++
Sbjct: 286 YKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDS-- 343
Query: 198 LFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVG 257
+ + EE +R R IY+ A+ ++P + +++++ Y E IE +
Sbjct: 344 -WFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIE 402
Query: 258 KRRFQYEDEVRKNPLNYDS----WFDYIRLE--ETNVPPAEEKL-----------YWQRY 300
+ R Y + ++ P + S W + E + N+ A + L +++Y
Sbjct: 403 RTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKY 462
Query: 301 IYLWINYALYEELDAGDVERTREVYKEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGAR 360
I + EL G+++R R++Y+ L P ++++K A+ E + + AR
Sbjct: 463 IEI--------ELQLGNMDRCRKLYERYLEWSPENCYAWSKY----AELERSLVETERAR 510
Query: 361 LILGNAIGKAPKDK---IFKKYIEIELQLGNIDRCRKLYEKYLE 401
I AI + D ++K YI+ E+ G ++R R LYE+ L+
Sbjct: 511 AIFELAISQPALDMPELLWKAYIDFEISEGELERTRALYERLLD 554
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 101/224 (45%), Gaps = 45/224 (20%)
Query: 93 VWLKYAQWE-VSQNDFKRARSVWERALEV----DYKNHTLWLKYAEVEMKNKFINHARNV 147
+W+ YA +E + D +R R V+ L++ + +WL A+ E++ + AR +
Sbjct: 386 LWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQI 445
Query: 148 WDRAVTLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEFEE 207
A+ P+ D+++ KYI +E LGN+ R++YER +E ++ A + +AE E
Sbjct: 446 LGNAIGKAPK-DKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYA---WSKYAELER 501
Query: 208 RCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 267
E+ERAR I++ A+ E L++ ++ FE G+ E + R YE +
Sbjct: 502 SLVETERARAIFELAISQPALDMPELLWKAYIDFEISEGELE--------RTRALYERLL 553
Query: 268 RKNPLNYDSWFDYIRLEETNVPPAEEKLYWQRYIYLWINYALYE 311
+ ++ +W+++A +E
Sbjct: 554 DRT----------------------------KHYKVWVSFAKFE 569
>AT5G45990.1 | Symbols: | crooked neck protein, putative / cell
cycle protein, putative | chr5:18651324-18653892 FORWARD
LENGTH=673
Length = 673
Score = 500 bits (1287), Expect = e-142, Method: Compositional matrix adjust.
Identities = 270/485 (55%), Positives = 321/485 (66%), Gaps = 85/485 (17%)
Query: 14 LTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPKLKITDPHELGEYR 73
+T KD EVKLPR TRVKNKTPAP+QIT PPK KITD EL +YR
Sbjct: 1 MTGKDAEVKLPRTTRVKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDSTELSDYR 60
Query: 74 LRKRKEFEDLIRRVRWNTSVWLKYAQWEVSQNDFKRA----------------------- 110
LR+RKEFED IRR RWN VW+KYA+WE SQ D+ RA
Sbjct: 61 LRRRKEFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAE 120
Query: 111 -----------RSVWERALEVDYKNHTLWLKYA--------------------------- 132
R+VW+R++ + + LW KY
Sbjct: 121 FEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQK 180
Query: 133 ------EVEMKNKFINHARNVWDRAVTLLPRIDQLWYKYIHME-EMLGNVAGGRQVYERA 185
+ E++ I AR++++R V P++ +Y E + G V R+VYERA
Sbjct: 181 AWLCFIKFELRYNEIERARSIYERFVLCHPKVSAF-IRYAKFEMKRGGQVKLAREVYERA 239
Query: 186 VERLADDEEAEQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQY 245
V++LA+DEEAE LFV+FAEFEERCKE ERAR IYKFALDHI KGRAE+LY+KFVAFEKQY
Sbjct: 240 VDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQY 299
Query: 246 GDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEET----------------NVP 289
GD+EGIEDAIVGK+RF+YEDEV KNPLNYDSWFDY+RLEE+ NVP
Sbjct: 300 GDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVP 359
Query: 290 PAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKEGLNMIPHKKFSFAKMWLLAAQF 349
PA+EK +WQRYIYLWINYALYEE++ DVERTR+VY+E L +IPH KFSFAK+WLLAA++
Sbjct: 360 PAQEKRFWQRYIYLWINYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEY 419
Query: 350 EIRQLNLKGARLILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYA 409
EIRQLNL GAR ILGNAIGKAPK KIFKKYIE+EL+L NIDRCRKLYE++LEW+PENCYA
Sbjct: 420 EIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYA 479
Query: 410 WSKYA 414
W YA
Sbjct: 480 WRNYA 484
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 162/356 (45%), Gaps = 46/356 (12%)
Query: 91 TSVWLKYAQWEVSQN-DFKRARSVWERA---LEVDYKNHTLWLKYAEVEMKNKFINHARN 146
S +++YA++E+ + K AR V+ERA L D + L++ +AE E + K + AR
Sbjct: 212 VSAFIRYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARF 271
Query: 147 VWDRAVTLL--PRIDQLWYKYIHMEEMLGNVAG------GRQVYERAVERLADDEEAEQL 198
++ A+ + R ++L+ K++ E+ G+ G G++ +E E + +
Sbjct: 272 IYKFALDHIRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSW 331
Query: 199 FVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGK 258
F + EE +R R IY+ A+ ++P + + +++++ Y E IE V +
Sbjct: 332 F-DYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVER 390
Query: 259 RRFQYEDEVRKNPLNYDSWFDY------IRLEETNVPPAEEKL-----------YWQRYI 301
R Y + ++ P S+ + + N+ A + L +++YI
Sbjct: 391 TRDVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYI 450
Query: 302 YLWINYALYEELDAGDVERTREVYKEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGARL 361
+ EL +++R R++Y+ L P ++ W A+FEI + AR
Sbjct: 451 EM--------ELKLVNIDRCRKLYERFLEWSPENCYA----WRNYAEFEISLAETERARA 498
Query: 362 ILGNAIGKAPKDK---IFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA 414
I AI + D ++K YI+ E+ G ++ R LYE+ L+ ++C W +A
Sbjct: 499 IFELAISQPALDMPELLWKTYIDFEISEGEFEKTRALYERLLD-RTKHCKVWISFA 553
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 27/228 (11%)
Query: 93 VWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
++ KY + E+ + R R ++ER LE +N W YAE E+ AR +++ A+
Sbjct: 445 IFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAI 504
Query: 153 TLLPRIDQ---LWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEFEERC 209
+ P +D LW YI E G R +Y ERL D + +++++FA+FE
Sbjct: 505 S-QPALDMPELLWKTYIDFEISEGEFEKTRALY----ERLLDRTKHCKVWISFAKFEASA 559
Query: 210 KES------------ERARCIYKFALDHIPKGRA---EDLYRKFVAFEKQYGDREGIEDA 254
E +RA YK + + RA ED F + GD ++
Sbjct: 560 SEHKEDGIKSARVIFDRANTYYKDTTPELEEERATLLEDWLNMETGF-GELGDVSVVQSK 618
Query: 255 IVGKRRFQYEDEVRKNPLNYDSWFDYIRLEE---TNVPPAEEKLYWQR 299
+ K + + Y+ +FDY+ EE TN+ E W++
Sbjct: 619 LPKKLKKRKMTSREDGSTEYEEYFDYLFPEESGTTNLKILEAAYKWKK 666
>AT3G13210.1 | Symbols: | crooked neck protein, putative / cell
cycle protein, putative | chr3:4244921-4247697 FORWARD
LENGTH=657
Length = 657
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/465 (56%), Positives = 309/465 (66%), Gaps = 62/465 (13%)
Query: 1 MSSSREGDPNLGYLTRKDTEVKLPRPTRVKNKTPAPIQITXXXXXXXXXXXXXXXXXPPK 60
M+S ++ D NLGY+TRKD E+KLPR T+VKNKTPAPIQIT PP
Sbjct: 1 MASGKDSDRNLGYMTRKDAELKLPRMTQVKNKTPAPIQITAEQILREARERQEAEFRPPN 60
Query: 61 LKITDPHELGEYRLRKRKEFEDLIRRVRWNTSVWLKYAQWEVSQNDFKRARSVWERALE- 119
ITD EL +YRLR+RKEFED IRR R NT VW+KYA +E+ AR+VW+RA+
Sbjct: 61 QTITDSAELSDYRLRRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSL 120
Query: 120 ---VD---YK--------------------------NHTLWLKYAEVEMKNKFINHARNV 147
VD YK + WL + + E+K I AR++
Sbjct: 121 LPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSI 180
Query: 148 WDRAVTLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEFEE 207
++R V P++ + +Y E G V +V+ERA + LADDEEAE LFVAFAEFEE
Sbjct: 181 YERFVLCHPKVSA-YIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEE 239
Query: 208 RCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEV 267
+ YKFALD IPKGRAE+LY KFVAFEKQ GD+EGIEDAI+GKRR QYEDEV
Sbjct: 240 Q----------YKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEV 289
Query: 268 RKNPLNYDSWFDYIRLEET----------------NVPP--AEEKLYWQRYIYLWINYAL 309
RKNPLNYDSWFD++RLEET NVPP A+EK YWQRYIYLWINYA
Sbjct: 290 RKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAF 349
Query: 310 YEELDAGDVERTREVYKEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGK 369
+ E+ DVE TR+VY+ L +IPH KFSFAK+WLLAAQ EIRQLNL GAR ILGNAIGK
Sbjct: 350 FAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGK 409
Query: 370 APKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA 414
APKDKIFKKYIEIELQL NIDRCRKLYE+YLEW+P NCYAW KYA
Sbjct: 410 APKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYA 454
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Query: 93 VWLKYAQW-EVSQNDFKRARSVWERALEV----DYKNHTLWLKYAEVEMKNKFINHARNV 147
+W+ YA + E+ D + R V+ L++ + +WL A+ E++ + AR +
Sbjct: 343 LWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQI 402
Query: 148 WDRAVTLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEFEE 207
A+ P+ D+++ KYI +E L N+ R++YER +E + A + +AEFE
Sbjct: 403 LGNAIGKAPK-DKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYA---WRKYAEFEM 458
Query: 208 RCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDRE 249
E+ER R I++ A+ E L++ ++ FE G+ E
Sbjct: 459 SLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELE 500
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 93 VWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
++ KY + E+ + R R ++ER LE N W KYAE EM R +++ A+
Sbjct: 415 IFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAI 474
Query: 153 TLLPRIDQ---LWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEFE 206
+ P +D LW YI E G + R +Y ERL D + +++V FA+FE
Sbjct: 475 S-QPALDMPELLWKTYIDFEISEGELERTRALY----ERLLDRTKHCKVWVDFAKFE 526
>AT3G51110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18983711-18984952 FORWARD
LENGTH=413
Length = 413
Score = 314 bits (805), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 228/402 (56%), Gaps = 87/402 (21%)
Query: 26 PTRVKNKTPAPIQITXXXXXXXXXXXX-XXXXXPPKLKITDPHELGEYRLRKRKEFEDLI 84
P VKNKTPAP+QIT PPK KITD EL EYRLR+RKEFED I
Sbjct: 5 PRMVKNKTPAPVQITAEQVLKEAREREDSRILRPPKQKITDSDELAEYRLRRRKEFEDQI 64
Query: 85 RRVRWNTSVWLKYAQWEVSQNDFKRAR--------------------------------- 111
R + N+ VW++YA WE SQ D RAR
Sbjct: 65 RGAKTNSQVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNH 124
Query: 112 --SVWERALEVDYKNHTLWLKYAEVE---------------------------------M 136
+VW+RA+++ + W KY +E +
Sbjct: 125 ARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIKFEL 184
Query: 137 KNKFINHARNVWDRAVTLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLAD-DEEA 195
+ I +R++++R V P+ +Y E V+ R VYERA+E L D +EEA
Sbjct: 185 RYNEIERSRSIYERFVLCHPKASSF-IRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEA 243
Query: 196 EQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAI 255
E +FVAFAEFEE CKE ERAR +YK+ALDHIPKGRAEDLY+KFVAFEKQYG++EGI+DAI
Sbjct: 244 EMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAI 303
Query: 256 VGKRRFQYEDEVRKNPLNYDSWFDYIRLEET----------------NVPPAEEKLYWQR 299
VG+R+ QYE EVRKNPLNYDSWFDYI LEET NVP AEEK YWQR
Sbjct: 304 VGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANVPLAEEKRYWQR 363
Query: 300 YIYLWINYALYEELDAGDVERTREVYKEGLNMIPHKKFSFAK 341
YIYLWI+YAL+EE+ A DVERTR VY+E LN+IP + F +
Sbjct: 364 YIYLWIDYALFEEILAEDVERTRAVYRECLNLIPSLQILFCQ 405
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 303 LWINYALYEELDAGDVERTREVYKEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGARLI 362
+W+ YA +EE D +R R V++ L ++ + +WL A+FE+R ++ AR +
Sbjct: 73 VWVRYADWEE-SQKDHDRARSVWERALEDESYRNHT---LWLKYAEFEMRNKSVNHARNV 128
Query: 363 LGNAIGKAPK-DKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPEN 406
A+ P+ D+ + KYI +E LGNID RK++E++++W+P+
Sbjct: 129 WDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQ 173
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 258 KRRFQYEDEVRKNPLNYDSWFDYIRLEETNVPPAEEKLYWQRYI--------YLWINYAL 309
+RR ++ED++R N W Y EE+ + W+R + LW+ YA
Sbjct: 55 RRRKEFEDQIRGAKTNSQVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAE 114
Query: 310 YEELDAGDVERTREVYKEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGK 369
+E + V R V+ + ++P + W E N+ GAR I +
Sbjct: 115 FE-MRNKSVNHARNVWDRAVKILPR----VDQFWYKYIHMEEILGNIDGARKIFERWMDW 169
Query: 370 APKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAP 404
+P + + +I+ EL+ I+R R +YE+++ P
Sbjct: 170 SPDQQAWLCFIKFELRYNEIERSRSIYERFVLCHP 204
>AT4G03430.1 | Symbols: STA1, EMB2770 | pre-mRNA splicing
factor-related | chr4:1517411-1520500 REVERSE
LENGTH=1029
Length = 1029
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 128/291 (43%), Gaps = 26/291 (8%)
Query: 93 VWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARNVWDRAV 152
W+ A + + AR+++ AL V ++WLK A++E + + +AV
Sbjct: 627 TWVADADECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAV 686
Query: 153 TLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEFEERCKES 212
T +P+ + LW + + G+V R + + A + + EE +++A + E KE
Sbjct: 687 TYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEE---IWLAAFKLEFENKEP 743
Query: 213 ERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPL 272
ERAR + A + +G E ++ K E++ G+ E +RR E +++ P
Sbjct: 744 ERARMLLAKARE---RGGTERVWMKSAIVERELGNVEE-------ERRLLNEG-LKQFPT 792
Query: 273 NYDSWFDYIRLEE--TNVPPAEEKL-----YWQRYIYLWINYALYEELDAGDVERTREVY 325
+ W +LEE ++ A + + I LW++ A EE G + + R +
Sbjct: 793 FFKLWLMLGQLEERFKHLEQARKAYDTGLKHCPHCIPLWLSLADLEEKVNG-LNKARAI- 850
Query: 326 KEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIF 376
L K A++WL A + E+R N + A ++ A+ PK I
Sbjct: 851 ---LTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQDCPKSGIL 898
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 141/324 (43%), Gaps = 58/324 (17%)
Query: 93 VWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEMKNKFINHARN------ 146
+W+ A+ E + ++ V +A E K +W+ A++E N ++ A +
Sbjct: 514 LWVALARLET----YAESKKVLNKAREKLPKEPAIWITAAKLEEANGKLDEANDNTAMVG 569
Query: 147 -VWDRAVTLLPR----ID-QLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFV 200
+ DR + L R ID + W E +G+VA + + + + ++E+ ++ +V
Sbjct: 570 KIIDRGIKTLQREGVVIDRENWMSEAEACERVGSVATCQAIIKNTIGIGVEEEDRKRTWV 629
Query: 201 AFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRR 260
A A+ ++ E AR IY AL ++ ++ K EK +G RE + DA+
Sbjct: 630 ADADECKKRGSIETARAIYAHALSVFLTKKS--IWLKAAQLEKSHGSRESL-DAL----- 681
Query: 261 FQYEDEVRKNPLNYDSWFDYIRLEETNVPPAEEKLYWQRYIYLWINYALYEELDAGDVER 320
+R T VP AE LW+ A E+ AGDV
Sbjct: 682 --------------------LRKAVTYVPQAE---------VLWLMGA-KEKWLAGDVPA 711
Query: 321 TREVYKEGLNMIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYI 380
R + +E IP+ + ++WL A + E + AR++L A + ++++ K
Sbjct: 712 ARAILQEAYAAIPNSE----EIWLAAFKLEFENKEPERARMLLAKARERGGTERVWMKSA 767
Query: 381 EIELQLGNIDRCRKLYEKYLEWAP 404
+E +LGN++ R+L + L+ P
Sbjct: 768 IVERELGNVEEERRLLNEGLKQFP 791
>AT5G28740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10780774-10783772 FORWARD
LENGTH=917
Length = 917
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 70/343 (20%)
Query: 92 SVWLKYAQWEVSQNDFKRARSVWERALEVDYKN----HTLWLKYAEVEMKNKFINHARNV 147
++W+ +A+ + D R ++++A++V+YK ++W ++AE+E+++K A +
Sbjct: 424 TLWVAFAKLYENHKDLVNTRVIFDKAVQVNYKTVDHLASVWCEWAEMELRHKNFKGALEL 483
Query: 148 WDRAVTL--------------------LPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVE 187
RA + L R +LW Y+ +EE LG + R VYE+ ++
Sbjct: 484 MRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEKILD 543
Query: 188 -RLADDEEAEQLFVAFAEFEERCKESERARCIYKFALDHIPKGRAEDLYRKFVA-FEKQY 245
R+A Q+ + +A E K E A +Y+ + +D++ ++ F K+Y
Sbjct: 544 LRIA----TPQIIMNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRY 599
Query: 246 GDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEETNVPPAEEKLYWQRYIYLWI 305
G + + + R +E V P D +R L++
Sbjct: 600 GKTK------LERARELFEHAVSMAP------SDAVRT-------------------LYL 628
Query: 306 NYALYEELDAGDVERTREVYKEGLNMIPH-KKFSFAKMWLLAAQFEIRQLNLKGARLILG 364
YA EE D G +R +VY+E +P +K ++++ A EI + R I
Sbjct: 629 QYAKLEE-DYGLAKRAMKVYEEATKKVPEGQKLEMYEIYISRAA-EI--FGVPRTREIYE 684
Query: 365 NAIGKAPKDKIFK----KYIEIELQLGNIDRCRKLYEKYLEWA 403
AI K K K+ E+E LG IDR R LY+ ++A
Sbjct: 685 QAIESGLPHKDVKIMCIKFAELERSLGEIDRARALYKYSSQFA 727
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 7/174 (4%)
Query: 93 VWLKYAQWEV---SQNDFKRARSVWERALEVDYKN--HTLWLKYAEVEMKNKFINHARNV 147
+W+ Y V + +RAR ++E A+ + + TL+L+YA++E A V
Sbjct: 587 IWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKRAMKV 646
Query: 148 WDRAVTLLPRIDQL--WYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAEQLFVAFAEF 205
++ A +P +L + YI + V R++YE+A+E ++ + + + FAE
Sbjct: 647 YEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAEL 706
Query: 206 EERCKESERARCIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKR 259
E E +RAR +YK++ + + K+ FE Q+G+ + + + KR
Sbjct: 707 ERSLGEIDRARALYKYSSQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKR 760
>AT3G17040.1 | Symbols: HCF107 | high chlorophyll fluorescent 107 |
chr3:5809378-5812605 REVERSE LENGTH=652
Length = 652
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%)
Query: 77 RKEFEDLIRRVRWNTSVWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEM 136
RK FE ++ N W + +E + +R R + + ++ ++ L +E
Sbjct: 359 RKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEY 418
Query: 137 KNKFINHARNVWDRAVTLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAE 196
K+ N AR + RA L PR +W + ME GN R++Y+RA+ A+ E A
Sbjct: 419 KHSSANLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESAS 478
Query: 197 QLFVAFAEFEERCKESERARCIYKFALD 224
+ A+ E+R AR +++ +L+
Sbjct: 479 RCLQAWGVLEQRAGNLSAARRLFRSSLN 506
>AT3G17040.2 | Symbols: HCF107 | high chlorophyll fluorescent 107 |
chr3:5809378-5812605 REVERSE LENGTH=618
Length = 618
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%)
Query: 77 RKEFEDLIRRVRWNTSVWLKYAQWEVSQNDFKRARSVWERALEVDYKNHTLWLKYAEVEM 136
RK FE ++ N W + +E + +R R + + ++ ++ L +E
Sbjct: 325 RKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEY 384
Query: 137 KNKFINHARNVWDRAVTLLPRIDQLWYKYIHMEEMLGNVAGGRQVYERAVERLADDEEAE 196
K+ N AR + RA L PR +W + ME GN R++Y+RA+ A+ E A
Sbjct: 385 KHSSANLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESAS 444
Query: 197 QLFVAFAEFEERCKESERARCIYKFALD 224
+ A+ E+R AR +++ +L+
Sbjct: 445 RCLQAWGVLEQRAGNLSAARRLFRSSLN 472