Miyakogusa Predicted Gene

Lj2g3v3106140.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3106140.1 Non Chatacterized Hit- tr|D5ACZ6|D5ACZ6_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,34.38,3e-17,Sas10_Utp3,Sas10/Utp3/C1D,CUFF.39715.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G25080.1 | Symbols:  | Sas10/Utp3/C1D family | chr5:8643782-8...   126   6e-30

>AT5G25080.1 | Symbols:  | Sas10/Utp3/C1D family |
           chr5:8643782-8646306 FORWARD LENGTH=217
          Length = 217

 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 114/197 (57%), Gaps = 27/197 (13%)

Query: 11  TVPEATIESLNRTLHSVEQLEAQLPEFLSLSDPELLEQMPLLHRAHSLFSLAKLTSTLFS 70
            VPE+ IE++N+TL  +++L+ QL + L+L++PE+L  M  L RA ++  LA+ T+TL+ 
Sbjct: 15  VVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLYE 74

Query: 71  LKLRCRGINPNDHPFKSELDRIS----KFQKKLEL-----------------------LP 103
           L+LRC G++P+DH  KSE++RI+    KFQK ++                        LP
Sbjct: 75  LRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSLP 134

Query: 104 RLSEAQRQDMRNTSRGEGPNMNCEEQAGQKRKYTSSEEQSAQTGAKEFLEKETGELRVDN 163
            L+  Q+Q +R+ S+GE   +   E + +KRKY S+E+QS Q+ AK+FLEK   E+   N
Sbjct: 135 DLTSTQKQSIRDLSKGEKSRIRYSETSARKRKYQSNEKQSVQSAAKDFLEKAAREIIGHN 194

Query: 164 RGNSKEAIVIDISDDDD 180
               K  +V      DD
Sbjct: 195 ENGLKGPLVAAADGSDD 211