Miyakogusa Predicted Gene

Lj2g3v3103790.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3103790.1 tr|G7KD42|G7KD42_MEDTR Conserved oligomeric Golgi
complex subunit OS=Medicago truncatula GN=MTR_5g09,94.09,0,seg,NULL;
coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; CONSERVED OLIGOMERIC GOLGI
COMPLEX COMPONENT 5,NODE_13046_length_2215_cov_144.518280.path2.1
         (559 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67930.1 | Symbols:  | Golgi transport complex protein-relate...   812   0.0  

>AT1G67930.1 | Symbols:  | Golgi transport complex protein-related |
           chr1:25474218-25477332 REVERSE LENGTH=832
          Length = 832

 Score =  812 bits (2098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/553 (70%), Positives = 449/553 (81%), Gaps = 3/553 (0%)

Query: 1   MGAKSVSVALDMKAITXXXXXXXXXXXXXXXXXXXXXXXVKAREALWQRLGTCMDQLHSI 60
           M  KSVSVA+DMKAIT                        K REALWQR+ +CM+QL S+
Sbjct: 280 MAVKSVSVAMDMKAITSGSGGGFGPGGIRSSGSPHIGGGAKVREALWQRMASCMEQLCSL 339

Query: 61  AVAVWHLQRVLSKKRDPFTHVLLLDEVIQEGDPMLTDRVWEAIAKAFASQMKSAFTASSF 120
            VAVWHLQRVLSKKRDPFTHVLLLDEVI+EGD MLTDRVW+A+ KAF SQMKSA+TASSF
Sbjct: 340 VVAVWHLQRVLSKKRDPFTHVLLLDEVIKEGDSMLTDRVWDALVKAFTSQMKSAYTASSF 399

Query: 121 VKEIFTMGYPKLYSMIENLLERITRDTDVKGVLPAISSGGKDQMVSAVEIFQSAFLGHCL 180
           VKEIFTMGYPKL SMIENLLERI+RDTDVKGVLPAI+   K+QMV+ + IFQ+AFL  C 
Sbjct: 400 VKEIFTMGYPKLVSMIENLLERISRDTDVKGVLPAINLERKEQMVACIAIFQTAFLSLCF 459

Query: 181 SRLSDLVNSVFPMSSRGSVPSKXXXXXXXXXXXXXXXAVQMDARLTLLVLREIGKVLLLL 240
            RLSDLVNS+FPMSSRGS+PSK               AV  DARLTLLVLREIGK L  L
Sbjct: 460 GRLSDLVNSIFPMSSRGSLPSKEQISQVLSHIQDEIEAVHPDARLTLLVLREIGKALSNL 519

Query: 241 AERTEYQISTGPESRQVSGPATPAQLKNFTLCQHLQDVHARISTMLKGMPSIAADVLSAS 300
           A+R E QISTGPE+RQ+SGPAT  Q++NFTLCQHLQ +H  IS+M+  +PSIA DVLS  
Sbjct: 520 AQRAECQISTGPETRQISGPATSTQIRNFTLCQHLQGIHTHISSMVADLPSIATDVLSPY 579

Query: 301 LGAIYGVACDSVTSLFQAMLDRLESCILQIHDHNFGVLGMDAAMDNNASPYMEELQKCIL 360
           L AIY  AC+ VT LF+AM D+LESCILQIHD NFG    DA MDNNAS YMEELQ+ IL
Sbjct: 580 LAAIYDAACEPVTPLFKAMRDKLESCILQIHDQNFG--ADDADMDNNASSYMEELQRSIL 637

Query: 361 HFRSEFLSKLLPSRAT-TAKGTENICTRLVQSMASRVLVFFIRHASLVRPLSESGKLRMA 419
           HFR EFLS+LLPS A     GTE+ICTRL + MASRVL+F+IRHASLVRPLSE GKLRMA
Sbjct: 638 HFRKEFLSRLLPSAANANTAGTESICTRLTRQMASRVLIFYIRHASLVRPLSEWGKLRMA 697

Query: 420 RDMAELELAVGQNLFPVEQLGAPYRALRSFRPLIFLETSQLASSPLLQDLPPNVILHHLY 479
           +DMAELELAVGQNLFPVEQLGAPYRALR+FRPL+FLETSQ+ SSPL+ DLPP+++LHHLY
Sbjct: 698 KDMAELELAVGQNLFPVEQLGAPYRALRAFRPLVFLETSQMGSSPLINDLPPSIVLHHLY 757

Query: 480 TRGPEDLQSPLQRNKLTPLQYSLWLDSQGEDQIWKGIKATLDDYAINVRSRGDKEFSPVY 539
           TRGP++L+SP+Q+N+L+P QYSLWLD+Q EDQIWKGIKATLDDYA+ +RSRGDKEFSPVY
Sbjct: 758 TRGPDELESPMQKNRLSPKQYSLWLDNQREDQIWKGIKATLDDYAVKIRSRGDKEFSPVY 817

Query: 540 PLMLQLGSTLTEK 552
           PLMLQ+GS+LT++
Sbjct: 818 PLMLQIGSSLTQE 830