Miyakogusa Predicted Gene

Lj2g3v3086560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3086560.1 Non Chatacterized Hit- tr|D7LZ23|D7LZ23_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,46.55,5e-16,PRONE,Plant specific Rop nucleotide exchanger,
PRONE,NODE_83427_length_1225_cov_15.594286.path3.1
         (143 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleoti...    87   3e-18
AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotid...    47   3e-06
AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotid...    47   3e-06
AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants) ...    47   6e-06

>AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleotide
           exchange factor 5 | chr5:1786028-1788363 FORWARD
           LENGTH=611
          Length = 611

 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 76/116 (65%), Gaps = 12/116 (10%)

Query: 1   MAFNIVARIDDLLYVDDLTKHSDRFPLV--PPTVNVVSQQKLS-RSMAVSVSGTPHK-AL 56
           +A NI+ARIDDLLYVDDLTK SD   L+  P   ++++ +K+      +S SGTP++ + 
Sbjct: 452 LASNIIARIDDLLYVDDLTKQSDDNNLLSSPAVSSIIAHKKVVPLPYLISASGTPYRTSF 511

Query: 57  SPVP-----LISPARGDRERTPFLNINNNNIIKPQ--RRGFGVRRALSNYLGGETK 105
           S  P     +ISP +G+R RTP+ + + N II+     RG+GVRR L+NYLG E+K
Sbjct: 512 STTPGFSPSMISPKKGER-RTPYSSKDTNKIIEKGLPSRGYGVRRVLNNYLGMESK 566


>AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide
           exchange factor 7 | chr5:383493-385698 FORWARD
           LENGTH=546
          Length = 546

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 25/27 (92%), Gaps = 1/27 (3%)

Query: 1   MAFNIVARIDDLLYVDDLTKH-SDRFP 26
           +AFNIVARIDDLL+VDDLT+H SD+ P
Sbjct: 415 LAFNIVARIDDLLFVDDLTRHSSDQIP 441


>AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide
           exchange factor 1 | chr4:17986643-17988659 FORWARD
           LENGTH=548
          Length = 548

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 1   MAFNIVARIDDLLYVDDLTKHSDRFPLVPPTVNVVSQQKLSRSMAVSVSGTPHKALSPVP 60
           MAFNI ARIDD+LYVDD  + S     V  ++++ S   L+   A SV  +PH +    P
Sbjct: 437 MAFNITARIDDVLYVDDAMRRSIS---VTESLSLFSINGLNPQKAFSVQSSPHGSPFATP 493

Query: 61  LISPA-RGDRERTPFLNINNNN 81
            +S A R  R   P  ++  N 
Sbjct: 494 ALSVASRSPRRAPPLYSVKRNG 515


>AT3G55660.1 | Symbols: ATROPGEF6, ROPGEF6 | ROP (rho of plants)
           guanine nucleotide exchange factor 6 |
           chr3:20649051-20651290 REVERSE LENGTH=579
          Length = 579

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 15/71 (21%)

Query: 43  SMAVSVSGTPHKALS---------PVPLISPARGDR--ERTPFLNINNNNIIKPQRRGFG 91
           S++ S + TP++ LS         P+PLISP  G R  ER PFL+  N      +R GFG
Sbjct: 513 SVSFSGTSTPYRTLSFSASTPSYSPMPLISPINGGRGGERAPFLSGRNIR----ERCGFG 568

Query: 92  VRRALSNYLGG 102
            ++AL+NYL G
Sbjct: 569 PKKALANYLRG 579