Miyakogusa Predicted Gene

Lj2g3v3086510.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3086510.1 Non Chatacterized Hit- tr|I1JIV7|I1JIV7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.7260
PE=,59.79,2e-18,F-box,F-box domain,
cyclin-like,NODE_47195_length_1382_cov_32.022430.path2.1
         (100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26850.1 | Symbols:  | F-box family protein | chr2:11449369-1...    47   2e-06
AT2G32560.1 | Symbols:  | F-box family protein | chr2:13824820-1...    47   2e-06

>AT2G26850.1 | Symbols:  | F-box family protein |
          chr2:11449369-11450889 REVERSE LENGTH=371
          Length = 371

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/31 (74%), Positives = 24/31 (77%)

Query: 55 LVLECILERLPQSSLCQMASVCHSLRERCVS 85
          L L+CILE LP S LC MA VC SLRERCVS
Sbjct: 68 LPLDCILELLPPSELCTMARVCSSLRERCVS 98


>AT2G32560.1 | Symbols:  | F-box family protein |
          chr2:13824820-13826761 FORWARD LENGTH=371
          Length = 371

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query: 55 LVLECILERLPQSSLCQMASVCHSLRERCVS 85
          L L+CIL+ LP S LC MA VC SLRERCVS
Sbjct: 68 LALDCILDLLPPSGLCSMARVCSSLRERCVS 98