Miyakogusa Predicted Gene

Lj2g3v3086500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3086500.1 Non Chatacterized Hit- tr|K4CGF7|K4CGF7_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,54.9,6e-19,seg,NULL,gene.g44170.t1.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42975.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    45   9e-06

>AT2G42975.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast; Has 32 Blast hits to 32
           proteins in 16 species: Archae - 0; Bacteria - 0;
           Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr2:17873998-17874820 FORWARD LENGTH=187
          Length = 187

 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 28/36 (77%), Gaps = 1/36 (2%)

Query: 84  NNGYDSDGSSSK-PTIREQLSQLFGGRDDDFSIPLG 118
           ++GY SDG  S+  TIR+QL+ L G RDDDFSIPLG
Sbjct: 87  SDGYLSDGGGSRGLTIRDQLAGLVGDRDDDFSIPLG 122