Miyakogusa Predicted Gene

Lj2g3v3085360.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3085360.2 tr|G7KD27|G7KD27_MEDTR Ribosomal RNA small
subunit methyltransferase B OS=Medicago truncatula
GN=MTR,81.52,0,NOL1_NOP2_SUN,Bacterial Fmu (Sun)/eukaryotic nucleolar
NOL1/Nop2p, conserved site; PUA,Pseudouridine,CUFF.39691.2
         (610 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06560.1 | Symbols:  | NOL1/NOP2/sun family protein | chr1:20...   743   0.0  
AT3G13180.1 | Symbols:  | NOL1/NOP2/sun family protein / antiter...    66   8e-11
AT4G26600.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    64   2e-10
AT5G55920.1 | Symbols: OLI2 | S-adenosyl-L-methionine-dependent ...    62   2e-09
AT5G26180.2 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    59   8e-09
AT5G26180.1 | Symbols:  | S-adenosyl-L-methionine-dependent meth...    59   8e-09

>AT1G06560.1 | Symbols:  | NOL1/NOP2/sun family protein |
           chr1:2007660-2011824 FORWARD LENGTH=599
          Length = 599

 Score =  743 bits (1919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/566 (64%), Positives = 434/566 (76%), Gaps = 11/566 (1%)

Query: 44  DRYSFNPTLQWNPQLHHYFLKAYGSHRFSLISAALTRPSRYSCIRVNSLRSTTDAVIEKL 103
           +RY ++P L+WNP++  YF KAYG   F+ IS ALTRPS YSCIRVN++++T+DAVIEKL
Sbjct: 45  ERYCYDPVLRWNPEVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEKL 104

Query: 104 RSLVNQQPPSNAEDEVVNPLKDCDGSAAAPFSKCRIPGLDYVVFVWGSGPHRIDYGRDAD 163
             ++N    S    ++V P    DGS+  P +KC+IPGLDYVVFV GSGPH+I+Y    +
Sbjct: 105 TKILND---SEEGLKLVQP----DGSS--PVTKCQIPGLDYVVFVNGSGPHKIEYDSGLE 155

Query: 164 APPKEVIVSRKCAEAVLRGAQVYVPGIVACSAHVEEGDTVAVSVAVEQQGSSGGWSAGMT 223
            PPKEV+VSRKCAEAVLRGAQVYVPG++AC+AHVE+GD VAV VA+EQ G  G WS  MT
Sbjct: 156 NPPKEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMT 215

Query: 224 RGTVLQGSQTDPYYTERSGLYIGQGVAMLSRAGMFRVPQGVGVDMKDRVYDLPSFHSVLE 283
           RGT LQG  TDPYY ERSGLYIG G AMLSRAGMFRVP G+ VD+  RV+ LPS H++LE
Sbjct: 216 RGTTLQGLPTDPYYRERSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILE 275

Query: 284 GDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNKVL 343
           G+IFLQNLPSII AHALDPQ GERILDMCAAPGGKTTAIAILM D+GE++A DRSHNKVL
Sbjct: 276 GEIFLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVL 335

Query: 344 DIQKLAAELGLSCIKAFRLDAVKSVCQRNDIDTLTDPCCNNANNGVASQEFSSPHLQVER 403
            +Q L+AE+G +CI   +LDA+KSVC    ++  T     N +N  +    S      E 
Sbjct: 336 VVQNLSAEMGFTCITTCKLDALKSVCLPTTLNEST--ILINGDNSSSMTSHSELSSNEEM 393

Query: 404 MQPLVTESLKTETQEENDNGEKANGRAYQSKADIRKNMRRARNGPGRNQSVGGQVDSSKG 463
                  S   ++ E+ND+ E+ NG    S+A IRKN  R +NG GR Q  GG+   S+G
Sbjct: 394 TSVTSRRSEADKSCEKNDSTEQPNGGDNVSQAYIRKNKGRLKNGRGRTQCQGGRAGKSQG 453

Query: 464 FSPGSFDRVLLDAPCSALGLRPRLFAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVY 523
           F P SFDRVLLDAPCSALGLRPRLFAG ET+ SLR+H  YQRKM DQAVQL R GG++VY
Sbjct: 454 FPPNSFDRVLLDAPCSALGLRPRLFAGLETVVSLRNHGWYQRKMLDQAVQLVRVGGILVY 513

Query: 524 STCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDEWLRPGEEDL 583
           STCTINP ENEA+VRYALDKY++LSLAPQHPRIGGPGLVG  EFPDGY++EWL+PGEE+L
Sbjct: 514 STCTINPSENEAVVRYALDKYRFLSLAPQHPRIGGPGLVGRCEFPDGYIEEWLKPGEEEL 573

Query: 584 VQRFDPSSPLDTIGFFIAKFAVGSKD 609
           VQ+FDPSS LDTIGFFIAKF+VG KD
Sbjct: 574 VQKFDPSSELDTIGFFIAKFSVGPKD 599


>AT3G13180.1 | Symbols:  | NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein |
           chr3:4236326-4239966 REVERSE LENGTH=523
          Length = 523

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 469 FDRVLLDAPCSALGLRPRL--FAGEETIESLRSHAKYQRKMFDQAVQLARPGGVIVYSTC 526
           +D+VLLDAPCS LG+  +         +E +    K Q ++ D A +L + GGV+VYSTC
Sbjct: 402 YDKVLLDAPCSGLGVLSKRADLRWNRKLEDMLELTKLQDELLDSASKLVKHGGVLVYSTC 461

Query: 527 TINPGENEALVRYALDKYKYLSLAP 551
           +I+P ENE  V   L ++   ++ P
Sbjct: 462 SIDPEENEGRVEAFLLRHPEFTIDP 486



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 31/209 (14%)

Query: 163 DAPPKEVIVSR-KCAEAVLR-GAQVYVPGIVACSAHVEE----------GDTVAVSVAVE 210
           D PP  V+    + A+  LR GA  +V GI+     ++E          GD  A + A+ 
Sbjct: 162 DMPPYAVVDENVRLAKVALRPGAGDFVNGILRKLVSLKEKDALPLPKVEGDDRAQARALA 221

Query: 211 QQGSSGGWSA-------GMTRGTVLQ-GSQTDPYYTERSGLYIGQGVA---MLSRAGMFR 259
              S   W         G+   T L   +  DP ++ R+    G+ +    ++ R    +
Sbjct: 222 TLHSHPVWMVRRWVKYLGLDEATKLMIWNNNDPGFSLRAN--TGRDITRADLVERLNSLK 279

Query: 260 VPQGVGVDMKDRVYDLPSFHSVLEGDIFLQNLPSI------IAAHALDPQMGERILDMCA 313
           VP  + + +++ V       +V++  +  + + S+      +    + PQ GERI+D CA
Sbjct: 280 VPHELSLHLEEFVRIKTGLQTVVQAGLLKEGICSVQDESAGLIVSVVKPQPGERIMDACA 339

Query: 314 APGGKTTAIAILMKDKGEVIATDRSHNKV 342
           APGGKT  +A  +K +G + A D +  ++
Sbjct: 340 APGGKTLFMASCLKGQGMIYAMDVNEGRL 368


>AT4G26600.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr4:13419629-13423418 FORWARD LENGTH=671
          Length = 671

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 16/149 (10%)

Query: 461 SKGFSPGSFDRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAVQL---- 514
           +K     S DRVLLDAPCS  G+  +       ++ + ++  A  Q+++   A+ L    
Sbjct: 406 TKVLGQSSVDRVLLDAPCSGTGVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDAN 465

Query: 515 ARPGGVIVYSTCTINPGENEALVRYALDKYKYLSLAPQHPRIGGPGLVGSFEFPDGYVDE 574
           ++ GG IVYSTC++   ENEA++ YAL K + + L P     G PG          + + 
Sbjct: 466 SKTGGYIVYSTCSVMIPENEAVIDYAL-KNRDVKLVPCGLDFGRPGF-------SSFREH 517

Query: 575 WLRPGEEDLVQRFDPSSPLDTIGFFIAKF 603
              P  E   +RF P    +  GFF+AK 
Sbjct: 518 RFHPSLEK-TRRFYPHV-HNMDGFFVAKL 544



 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 282 LEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNK 341
           L G   LQ+  S +   AL P+  ER++DM AAPGGKTT +A LMK+ G + A +    K
Sbjct: 320 LAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAALMKNTGIIYANEM---K 376

Query: 342 VLDIQKLAAEL 352
           V  ++ L+A L
Sbjct: 377 VPRLKSLSANL 387


>AT5G55920.1 | Symbols: OLI2 | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:22645742-22649383 REVERSE LENGTH=682
          Length = 682

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 6/88 (6%)

Query: 462 KGFSPGSFDRVLLDAPCSALGL--RPRLFAGEETIESLRSHAKYQRKMFDQAVQL----A 515
           K     + DRVLLDAPCS  G+  +       +T++ ++  A  Q+++   A+ +    +
Sbjct: 424 KVLGQNTVDRVLLDAPCSGTGIISKDESVKITKTMDEIKKFAHLQKQLLLAAIDMVDANS 483

Query: 516 RPGGVIVYSTCTINPGENEALVRYALDK 543
           + GG IVYSTC+I   ENEA++ YAL K
Sbjct: 484 KTGGYIVYSTCSIMVTENEAVIDYALKK 511



 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 282 LEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRSHNK 341
           L G   LQ   S +   AL P+  ERI+D+ AAPGGKTT IA LMK+ G + A +    K
Sbjct: 337 LAGYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEM---K 393

Query: 342 VLDIQKLAAEL 352
           V  ++ L A L
Sbjct: 394 VPRLKSLTANL 404


>AT5G26180.2 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:9149253-9152595 FORWARD LENGTH=567
          Length = 567

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query: 274 DLPSFHSVLEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVI 333
           DL +   V  G IFLQ   S + A AL PQ G  +LD C+APG KT  +A LM+ +G++I
Sbjct: 274 DLHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKII 333

Query: 334 ATDRSHNKVLDIQKLAAELGLSCIK 358
           A + +  +V  ++      G S I+
Sbjct: 334 ACELNEERVKRLEHTIKLSGASNIE 358


>AT5G26180.1 | Symbols:  | S-adenosyl-L-methionine-dependent
           methyltransferases superfamily protein |
           chr5:9149253-9152595 FORWARD LENGTH=567
          Length = 567

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 48/85 (56%)

Query: 274 DLPSFHSVLEGDIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVI 333
           DL +   V  G IFLQ   S + A AL PQ G  +LD C+APG KT  +A LM+ +G++I
Sbjct: 274 DLHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAALMEGQGKII 333

Query: 334 ATDRSHNKVLDIQKLAAELGLSCIK 358
           A + +  +V  ++      G S I+
Sbjct: 334 ACELNEERVKRLEHTIKLSGASNIE 358