Miyakogusa Predicted Gene

Lj2g3v3072930.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3072930.1 Non Chatacterized Hit- tr|I1M710|I1M710_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10202
PE,85.77,0,LISH,LisH dimerisation motif; CTLH,CTLH, C-terminal LisH
motif; WD REPEAT PROTEIN 26-RELATED,NULL; C,CUFF.39697.1
         (262 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repe...   265   3e-71
AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repe...   265   3e-71
AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repe...   128   4e-30

>AT5G08560.2 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/271 (50%), Positives = 176/271 (64%), Gaps = 13/271 (4%)

Query: 1   MGGVEDEEPALKRMXXXXX--XXXXXXXXXXXXEPVGGFLSDSMARPLPSHGDEQVVGSK 58
           MG VED EP LKR                          L D MARPLPS GD++ +GSK
Sbjct: 1   MGVVEDTEPPLKRAKRLADEPNGFSANSSVRGSSVNSNSLGDLMARPLPSQGDDETIGSK 60

Query: 59  GVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATL 118
           GVI++ EFVRII +ALYSLGY K+GA LEEESGI LH+  + +F+QQ+ DG WD S+ TL
Sbjct: 61  GVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTL 120

Query: 119 HTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRVRELSSCM 178
           H +G  DE  V++ASFL+LEQKF E L  EK+ +AL+TLR E++PL + + RV EL+S +
Sbjct: 121 HRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSL 180

Query: 179 VSPS---------PKQDILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREA 229
           +SPS         P ++   V SRS            +V+IPEKRLE LVE +L +QR++
Sbjct: 181 ISPSSFISHTTSTPGKE--SVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQRDS 238

Query: 230 CPFHNSLDKEMSLYSDHHCGKDQIPSKTLQV 260
           C FHN+LD ++SLYSDH CGK QIPS+T Q+
Sbjct: 239 CVFHNTLDSDLSLYSDHQCGKHQIPSQTAQI 269


>AT5G08560.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:2771104-2773827 REVERSE LENGTH=589
          Length = 589

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/271 (50%), Positives = 176/271 (64%), Gaps = 13/271 (4%)

Query: 1   MGGVEDEEPALKRMXXXXX--XXXXXXXXXXXXEPVGGFLSDSMARPLPSHGDEQVVGSK 58
           MG VED EP LKR                          L D MARPLPS GD++ +GSK
Sbjct: 1   MGVVEDTEPPLKRAKRLADEPNGFSANSSVRGSSVNSNSLGDLMARPLPSQGDDETIGSK 60

Query: 59  GVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILDGNWDDSIATL 118
           GVI++ EFVRII +ALYSLGY K+GA LEEESGI LH+  + +F+QQ+ DG WD S+ TL
Sbjct: 61  GVIRKSEFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTL 120

Query: 119 HTVGLADESVVRSASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVYSNRVRELSSCM 178
           H +G  DE  V++ASFL+LEQKF E L  EK+ +AL+TLR E++PL + + RV EL+S +
Sbjct: 121 HRIGFPDEKAVKAASFLLLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSL 180

Query: 179 VSPS---------PKQDILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQALILQREA 229
           +SPS         P ++   V SRS            +V+IPEKRLE LVE +L +QR++
Sbjct: 181 ISPSSFISHTTSTPGKE--SVNSRSKVLEELQTLLPASVIIPEKRLECLVENSLHIQRDS 238

Query: 230 CPFHNSLDKEMSLYSDHHCGKDQIPSKTLQV 260
           C FHN+LD ++SLYSDH CGK QIPS+T Q+
Sbjct: 239 CVFHNTLDSDLSLYSDHQCGKHQIPSQTAQI 269


>AT5G43920.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr5:17673397-17675630 FORWARD
           LENGTH=523
          Length = 523

 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 7/218 (3%)

Query: 49  HGDEQVVGSKGVIKRDEFVRIIAKALYSLGYRKSGAHLEEESGIPLHSPGVNMFIQQILD 108
           +G  +V+GSKG++K+ EF+RI+ + LYSLG++ S + LE ES I   +       +Q+L 
Sbjct: 3   NGLWEVLGSKGLLKKHEFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLS 62

Query: 109 GNWDDSIATLHTVGLADESVVR-SASFLILEQKFFELLHAEKVMEALKTLRTEISPLSVY 167
           GNWD  +  L  +        R +A +L+ +Q   E L    V  AL  LR +   L + 
Sbjct: 63  GNWDSCVQVLDRIFDNSMDDTRNTALYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMG 122

Query: 168 SNRVRELSSCMVSPSPKQ-----DILKVRSRSXXXXXXXXXXXXTVMIPEKRLEHLVEQA 222
             ++  L+  +V     +     + L +  R              ++IPE+RLEHLVE A
Sbjct: 123 KEKIHRLACDIVYSKEMESGEVDNCLVLDLRRKLLVELEKLIPLPIVIPERRLEHLVETA 182

Query: 223 LILQREACPFHNSLDKEMSLYSDHHCGKDQIPSKTLQV 260
           ++ Q + C +HNS D  +SLY DH CG+DQIPS+T+Q+
Sbjct: 183 VMDQIDTCMYHNSCDA-VSLYKDHCCGRDQIPSETVQI 219