Miyakogusa Predicted Gene

Lj2g3v3071910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3071910.1 tr|C0Z2T4|C0Z2T4_ARATH AT1G06680 protein
OS=Arabidopsis thaliana GN=AT1G06680 PE=4
SV=1,83.33,0.000000000000002,seg,NULL;
Mog1p/PsbP-like,Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich; no
description,Mog1/PsbP, al,CUFF.39676.1
         (260 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06680.1 | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem ...   377   e-105
AT1G06680.2 | Symbols: PSBP-1, OEE2, PSII-P | photosystem II sub...   296   8e-81
AT2G30790.1 | Symbols: PSBP-2 | photosystem II subunit P-2 | chr...   202   2e-52

>AT1G06680.1 | Symbols: PSBP-1, OEE2, PSII-P, OE23 | photosystem II
           subunit P-1 | chr1:2047940-2049186 FORWARD LENGTH=263
          Length = 263

 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/266 (72%), Positives = 214/266 (80%), Gaps = 9/266 (3%)

Query: 1   MASTQCFLYHHALTSRASSI------QRLVVNTKPNQVFCKAQKQATQEEDDASIVSRRL 54
           MA + CFL+  AL S A+        QR V  +KP Q+ CKAQ+     EDD S VSRRL
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS---HEDDNSAVSRRL 57

Query: 55  ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSVPSKWNPSKEV 114
           ALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ VP+KWNPSKE+
Sbjct: 58  ALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEI 117

Query: 115 EYTGQVLRYEDNFDXXXXXXXXXXXXDKKSITDYGSPEEFLSKVDYLLGKQAFFGETQAE 174
           EY GQVLR+EDNFD            DKKSITDYGSPEEFLS+V+YLLGKQA+FGET +E
Sbjct: 118 EYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASE 177

Query: 175 GGFDPNAVATANILESSTPVVDGKQYYVLTVLTRTADGDEGGKHQLIRAAVKDGKLYICK 234
           GGFD NAVATANILESS+  V GK YY L+VLTRTADGDEGGKHQLI A V  GKLYICK
Sbjct: 178 GGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICK 237

Query: 235 AQAGDKRWFKGARRYVESTASSFSVA 260
           AQAGDKRWFKGAR++VES A+SFSVA
Sbjct: 238 AQAGDKRWFKGARKFVESAATSFSVA 263


>AT1G06680.2 | Symbols: PSBP-1, OEE2, PSII-P | photosystem II
           subunit P-1 | chr1:2048076-2049186 FORWARD LENGTH=219
          Length = 219

 Score =  296 bits (759), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 141/180 (78%), Positives = 154/180 (85%)

Query: 81  NVFGKPKTNTDFLPYNGDGFKLSVPSKWNPSKEVEYTGQVLRYEDNFDXXXXXXXXXXXX 140
           NVFGKPKTNTDFLPYNGDGFK+ VP+KWNPSKE+EY GQVLR+EDNFD            
Sbjct: 40  NVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPT 99

Query: 141 DKKSITDYGSPEEFLSKVDYLLGKQAFFGETQAEGGFDPNAVATANILESSTPVVDGKQY 200
           DKKSITDYGSPEEFLS+V+YLLGKQA+FGET +EGGFD NAVATANILESS+  V GK Y
Sbjct: 100 DKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPY 159

Query: 201 YVLTVLTRTADGDEGGKHQLIRAAVKDGKLYICKAQAGDKRWFKGARRYVESTASSFSVA 260
           Y L+VLTRTADGDEGGKHQLI A V  GKLYICKAQAGDKRWFKGAR++VES A+SFSVA
Sbjct: 160 YYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 219


>AT2G30790.1 | Symbols: PSBP-2 | photosystem II subunit P-2 |
           chr2:13119047-13119596 REVERSE LENGTH=125
          Length = 125

 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/120 (79%), Positives = 108/120 (90%)

Query: 141 DKKSITDYGSPEEFLSKVDYLLGKQAFFGETQAEGGFDPNAVATANILESSTPVVDGKQY 200
           DKKSITDYGSPE+FLS+V+YLLGKQA+ GET +EGGFD NAVATANILE+ST  + GK+Y
Sbjct: 6   DKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEY 65

Query: 201 YVLTVLTRTADGDEGGKHQLIRAAVKDGKLYICKAQAGDKRWFKGARRYVESTASSFSVA 260
           Y L+VLTRTADGDEGGKHQLI A V  GKLYICKAQAGDKRWFKGAR++VE+ A+SFSVA
Sbjct: 66  YYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 125