Miyakogusa Predicted Gene

Lj2g3v3059790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3059790.1 tr|G7IA61|G7IA61_MEDTR Transcription factor
bHLH130 OS=Medicago truncatula GN=MTR_1g062000 PE=4
SV=1,43.8,8e-18,FMN-binding split barrel,FMN-binding split
barrel-related; seg,NULL,CUFF.39703.1
         (453 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   385   e-107
AT5G24060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   131   8e-31
AT5G24060.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   131   8e-31
AT3G49140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   100   3e-21

>AT3G59300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:21918667-21921877 FORWARD
           LENGTH=459
          Length = 459

 Score =  385 bits (988), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/401 (49%), Positives = 270/401 (67%), Gaps = 8/401 (1%)

Query: 48  LTSTRCKSPFFGSSPFLWPSTGHDLSLSKLFVAAXXXXXXXXXXXXXXHQGYHPLEELKV 107
           + S+RCK PFFGS+ F   S GHDL L+K+ VAA                GYHPLE+LK 
Sbjct: 51  VLSSRCKIPFFGSA-FHVSSGGHDLGLTKVSVAADYSDSVPDSSFY----GYHPLEDLKP 105

Query: 108 SNDSQPARLSPAVIAKTTIEANDHALLVFPGMVHCEPHAQISWAEYEYLIDDYGDMYIEI 167
           S   Q  +LS + +A+TT+EAN  A+LVFPG +HCEPH   SW+E++Y+IDDYGD++ EI
Sbjct: 106 SKRVQETKLSASEVARTTVEANSSAVLVFPGAIHCEPHDHNSWSEFKYVIDDYGDIFFEI 165

Query: 168 FDGANLLEDWEANNPVNALIGMDIPIYDNRRTASEDAIFNSGDDDEFPFDDGYIEVLEME 227
            D  N+LED  A+NPV A  GMD+P Y+N R   E  I + G+ D+  FDD Y E+++ E
Sbjct: 166 PDDENILEDPGASNPVKAFFGMDVPRYENTRHHEEYNISDIGNLDQIIFDDHYFEIMDSE 225

Query: 228 DINTPVNWRQPDINSSAHPLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEES 287
             + P++W  PD ++  HP+YF+K L+KA++M+ ++ M+ PSNGVSILG LRPA+ DEES
Sbjct: 226 ARDIPIDWGMPDTSNGVHPIYFAKHLSKAISMDYDRKMDYPSNGVSILGCLRPAFLDEES 285

Query: 288 YVRRMYPTEVSDGYSSDRKDGKDFYSSSINDQRDTSLTLYRLEIVKIKLHSVYGCQSDIS 347
           Y+RR++ +E  D YS + +   +  +SS  D+ D S +LYRLEIV I+L S+YG +S IS
Sbjct: 286 YIRRLFLSEDRDDYSWEVQGDDNPITSSRRDENDMSSSLYRLEIVGIELLSLYGAESSIS 345

Query: 348 FQEFQRAEPDILVHSSLAIVEHFNQ---NXXXXXXXXXXXXXXXXERAHLIGVDSLGLDL 404
            Q+FQ AEPDILVHS+ AI+E FN    N                E A+LI VDSLG+D+
Sbjct: 346 LQDFQDAEPDILVHSTSAIIERFNNRGINSSIALKALCKKKGLHAEEANLISVDSLGMDV 405

Query: 405 RVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPCRRKK 445
           RVF+G +V++HRFPFK +A +  AAEK+I +LLFP  RR+K
Sbjct: 406 RVFAGAQVQTHRFPFKTRATTEMAAEKKIHQLLFPRSRRRK 446


>AT5G24060.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:8130273-8133269 REVERSE
           LENGTH=481
          Length = 481

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 183/412 (44%), Gaps = 69/412 (16%)

Query: 99  YHPLEELKV---SNDSQPARLSPAVIAKTTIEANDHALLVFPGMVHCEPHAQISWAEYEY 155
           YHP E+++      +   +RLSP   A+T IE N    L+  G++    H  I W +  Y
Sbjct: 77  YHPSEDIRAYVPEKNPGDSRLSPPETARTIIEVNKKGTLMLSGLLGIGVHENILWPDIPY 136

Query: 156 LIDDYGDMYIEI-----------------------FDGANLLEDWEANNPVNALIGMDIP 192
           + D +G++Y ++                       FD   +++D E ++P    IG  I 
Sbjct: 137 VTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTMEMIKDMELSSPSG--IGFGIE 194

Query: 193 IYDNRRTASED------------------AIFNSGDDDEFPFDDGYIEVLEMEDINTPVN 234
             ++  +  ED                  A+   GDD+     D Y+     +   +  +
Sbjct: 195 EIEDGESEVEDENKGDEDEGEDKDDEEWVAVLEDGDDE-----DNYVS----DSDESLGD 245

Query: 235 WRQPDINSSAHPLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYP 294
           W   +     HP+YF++ + +  + +    M+ PS G++I G L P   ++ S +++   
Sbjct: 246 WANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLSPVIVEDHSDIQKHIS 305

Query: 295 TEVSDGY--SSDRKDGKDFYSSSINDQRD--------TSLTLYRLEIVKIKLHSVYGCQS 344
             +S G   + +R++ ++ +     ++ +         ++  Y+LEI++I+L +  G Q+
Sbjct: 306 GCISTGTDKNKERENSEEIFEGIGENESEILHVENSRNAIQYYKLEIIRIQLITAQGHQT 365

Query: 345 DISFQEFQRAEPDILVHSSLAIVEHFNQNXXXXXXXXXX----XXXXXXERAHLIGVDSL 400
           ++  ++ ++A+PD++  +S  I+    ++                    E   LIG+DSL
Sbjct: 366 EVEVEDVRKAQPDVIACASDGILTRLEEDGDKLTEALRSLCWRNNGIQAEEVKLIGIDSL 425

Query: 401 GLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPCRRKKNTKSRRN 452
           G DLR+ SG ++++ RF F ++A S + AE Q+  LLF     K     + N
Sbjct: 426 GFDLRICSGMQIETLRFAFSIRATSEHNAEGQLRELLFASTPSKPQKPKQTN 477


>AT5G24060.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:8130273-8133269 REVERSE
           LENGTH=494
          Length = 494

 Score =  131 bits (330), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 183/412 (44%), Gaps = 69/412 (16%)

Query: 99  YHPLEELKV---SNDSQPARLSPAVIAKTTIEANDHALLVFPGMVHCEPHAQISWAEYEY 155
           YHP E+++      +   +RLSP   A+T IE N    L+  G++    H  I W +  Y
Sbjct: 90  YHPSEDIRAYVPEKNPGDSRLSPPETARTIIEVNKKGTLMLSGLLGIGVHENILWPDIPY 149

Query: 156 LIDDYGDMYIEI-----------------------FDGANLLEDWEANNPVNALIGMDIP 192
           + D +G++Y ++                       FD   +++D E ++P    IG  I 
Sbjct: 150 VTDQHGNIYFQVKENEDIMQTVVTSDNNYVQVIVGFDTMEMIKDMELSSPSG--IGFGIE 207

Query: 193 IYDNRRTASED------------------AIFNSGDDDEFPFDDGYIEVLEMEDINTPVN 234
             ++  +  ED                  A+   GDD+     D Y+     +   +  +
Sbjct: 208 EIEDGESEVEDENKGDEDEGEDKDDEEWVAVLEDGDDE-----DNYVS----DSDESLGD 258

Query: 235 WRQPDINSSAHPLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMYP 294
           W   +     HP+YF++ + +  + +    M+ PS G++I G L P   ++ S +++   
Sbjct: 259 WANLETMRYCHPMYFARRMAEVASTDPVNWMDQPSAGLAIQGLLSPVIVEDHSDIQKHIS 318

Query: 295 TEVSDGY--SSDRKDGKDFYSSSINDQRD--------TSLTLYRLEIVKIKLHSVYGCQS 344
             +S G   + +R++ ++ +     ++ +         ++  Y+LEI++I+L +  G Q+
Sbjct: 319 GCISTGTDKNKERENSEEIFEGIGENESEILHVENSRNAIQYYKLEIIRIQLITAQGHQT 378

Query: 345 DISFQEFQRAEPDILVHSSLAIVEHFNQNXXXXXXXXXX----XXXXXXERAHLIGVDSL 400
           ++  ++ ++A+PD++  +S  I+    ++                    E   LIG+DSL
Sbjct: 379 EVEVEDVRKAQPDVIACASDGILTRLEEDGDKLTEALRSLCWRNNGIQAEEVKLIGIDSL 438

Query: 401 GLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPCRRKKNTKSRRN 452
           G DLR+ SG ++++ RF F ++A S + AE Q+  LLF     K     + N
Sbjct: 439 GFDLRICSGMQIETLRFAFSIRATSEHNAEGQLRELLFASTPSKPQKPKQTN 490


>AT3G49140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18212187-18215557 REVERSE
           LENGTH=499
          Length = 499

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 18/235 (7%)

Query: 234 NWRQPDINSSAHPLYFSKCLTKAVNMECEKSMNCPSNGVSILGYLRPAYADEESYVRRMY 293
           +W   +   S HP++F+K +T+  + +    M+ PS G++I G L     ++ S +++  
Sbjct: 265 DWANLETMRSCHPMFFAKRMTEVASNDPVDWMDQPSAGLAIQGLLSHILVEDYSDIQKKL 324

Query: 294 PTEVS------------DGYSSDRKDGKDF--YSSSINDQRDTSLTLYRLEIVKIKLHSV 339
               S            D    + K G D     SS +++    +  Y+LE+++I+L + 
Sbjct: 325 ADSNSTTNGNKDAENLVDKLEDNSKAGGDESEIDSSQDEKARNVVAFYKLEMIRIQLITA 384

Query: 340 YGCQSDISFQEFQRAEPDILVHSSLAIVEHFNQNXXXXXXXXXXX----XXXXXERAHLI 395
            G Q+++  ++ ++A+PD + H+S  I+    ++                    E   LI
Sbjct: 385 QGDQTEVEVEDVRKAQPDAIAHASAEIISRLEESGDKITEALKSLCWRHNSIQAEEVKLI 444

Query: 396 GVDSLGLDLRVFSGTEVKSHRFPFKVQANSVYAAEKQIWRLLFPPCRRKKNTKSR 450
           G+DSLG DLR+ +G +++S RF F  +A S   AE QI +LLFP   +    K +
Sbjct: 445 GIDSLGFDLRLCAGAKIESLRFAFSTRATSEENAEGQIRKLLFPKTNQSTQPKPK 499