Miyakogusa Predicted Gene

Lj2g3v3058550.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3058550.3 tr|F2QU11|F2QU11_PICP7
Chromodomain-helicase-DNA-binding protein 1 OS=Pichia pastoris (strain
ATCC 7,31.86,0.00000000001,seg,NULL; no description,NULL;
Chromo,Chromo domain,CUFF.39662.3
         (546 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544...   254   8e-68

>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
           chr2:5544601-5555543 REVERSE LENGTH=1724
          Length = 1724

 Score =  254 bits (650), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 135/243 (55%), Positives = 172/243 (70%), Gaps = 5/243 (2%)

Query: 282 FYAKKPKGRLRGKVGKSIQSTRDRKAFAPSSRQRRVKSSFXXXXXXXXXXXXXXXXXFKN 341
           +  KKPK R + K  +   +  +RK+F  SSRQ+R K+S+                 F++
Sbjct: 298 YGTKKPKVRQQSKGFRKSSAGLERKSFHVSSRQKR-KTSYQDDDSEEDSENDNDEG-FRS 355

Query: 342 TKKRSIHVRKNNSRSSVTASFSTRNSEVRTSSRAVRKVSYVESDGSEEADEGKKKKVQKX 401
             +R   +R+NN RS+ T     ++SEVR+S+R+VRKVSYVES+ SE+ D+GK +K QK 
Sbjct: 356 LARRGTTLRQNNGRSTNTIG---QSSEVRSSTRSVRKVSYVESEDSEDIDDGKNRKNQKD 412

Query: 402 XXXXXXXXXXXKVLWHQPKGMAEDAQRNNRSTDPVLMSHLFDSDFDWNEMEFLIKWKGQS 461
                      KVLWHQ KGM ED Q NN+ST PVL+S LFD++ DWNEMEFLIKWKGQS
Sbjct: 413 DIEEEDADVIEKVLWHQLKGMGEDVQTNNKSTVPVLVSQLFDTEPDWNEMEFLIKWKGQS 472

Query: 462 HLHCQWKSFAELQNLSGFKKVLNYTKRIMEDIRHRKTITREEIEVNDVSKEMDLDIIKQN 521
           HLHCQWK+ ++LQNLSGFKKVLNYTK++ E+IR+R  ++REEIEVNDVSKEMDLDIIKQN
Sbjct: 473 HLHCQWKTLSDLQNLSGFKKVLNYTKKVTEEIRYRTALSREEIEVNDVSKEMDLDIIKQN 532

Query: 522 SQV 524
           SQV
Sbjct: 533 SQV 535



 Score =  145 bits (365), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 126/226 (55%), Gaps = 13/226 (5%)

Query: 1   MALFRNFSNETVSHDVIEDKSQGQNADRVHRSLGNECLDATSSEKEFVMNMEAQYESDGE 60
           MA FRN+SN+TVSH+V+++  + QNA     S  NE +D T SE+ F MNM+ QY+SD E
Sbjct: 1   MAFFRNYSNDTVSHNVLDENEERQNAATFQSSPLNEDVDGTYSERGFDMNMDVQYQSDPE 60

Query: 61  PDGACRLQNEAAANDGDAIKKPNLQTTGGSKSATVRSWGSTFWKDCRPMHPQNXXXXXXX 120
           P  + R  NE A ++       + Q++      T R WGSTFWKDC+PM  +        
Sbjct: 61  PGCSIRQPNETAVDNVADPVDSHYQSSTKRLGVTGR-WGSTFWKDCQPMGQREGSDPAKD 119

Query: 121 XXXXXDYQNADVSEDNSLDGRAGRLDSEDDDELKEAGNGTR------GHSDVPAEEMLSD 174
                 Y+ A  SEDN  + R+ +LDSE++++ +             G +DVPA+EMLSD
Sbjct: 120 SQSG--YKEAYHSEDNHSNDRSEKLDSENENDNENEEEDNEMNKHQSGQADVPADEMLSD 177

Query: 175 EYYEQDGDEQSDSLHYGEIHKPTGMNSWPQRMAKSNRAMHRKSRIS 220
           EYYEQD D QSD +HY     PT   S P    K+  A+H  SR S
Sbjct: 178 EYYEQDEDNQSDHVHYKGYSNPTNSRSLP----KAGSAVHSNSRTS 219