Miyakogusa Predicted Gene

Lj2g3v3058520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3058520.1 Non Chatacterized Hit- tr|B9R8D3|B9R8D3_RICCO
Skp1, putative OS=Ricinus communis GN=RCOM_1598810
PE=,34.07,0.000000008,Found in Skp1 protein family,SKP1 component; no
description,BTB/POZ fold; Skp1_POZ,SKP1 component, P,CUFF.39650.1
         (352 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 | chr2:10948914-1...    59   4e-09
AT1G75950.1 | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase...    55   8e-08
AT5G42190.1 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF com...    54   2e-07
AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 | chr1:6986430-69...    54   2e-07
AT5G66870.1 | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1 ...    52   5e-07
AT2G23660.2 | Symbols: LBD10 | LOB domain-containing protein 10 ...    52   8e-07
AT2G23660.1 | Symbols: LBD10 | LOB domain-containing protein 10 ...    52   8e-07
AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:1648002...    50   2e-06

>AT2G25700.1 | Symbols: ASK3, SK3 | SKP1-like 3 |
           chr2:10948914-10949551 REVERSE LENGTH=163
          Length = 163

 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 189 SQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFCE 248
           ++  I L+SSD   FE+ + VA+ ES+ +K +IE    ++ IP+P V+  +L +VI +C+
Sbjct: 4   TKKMIILKSSDGESFEVEEAVAV-ESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCK 62

Query: 249 KKLKF------DQLFKSIGE--ILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPS 300
           K ++       D+ F    E   LKT       W   FV  +H     L  AAN+LNI  
Sbjct: 63  KHVEAAAEAGGDKDFYGSTENHELKT-------WDNDFVKVDHPTLFDLLRAANYLNISG 115

Query: 301 LFEFTSLFTGLQDRGENENKIQE 323
           L + T      Q RG+   +++E
Sbjct: 116 LLDLTCKAVADQMRGKTPAQMRE 138


>AT1G75950.1 | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase
           kinase-associated protein 1 | chr1:28516715-28517454
           FORWARD LENGTH=160
          Length = 160

 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 1/137 (0%)

Query: 188 VSQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFC 247
           +S   I L+SSD   FE+ + VA+ ES+ +  ++E    ++ +P+P V+S +L +VI +C
Sbjct: 1   MSAKKIVLKSSDGESFEVEEAVAL-ESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYC 59

Query: 248 EKKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSL 307
           ++ ++         E   T     +AW   F+  + +    L  AAN+LNI +L + T  
Sbjct: 60  KRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQ 119

Query: 308 FTGLQDRGENENKIQET 324
                 +G+   +I+ T
Sbjct: 120 TVADMIKGKTPEEIRTT 136


>AT5G42190.1 | Symbols: ASK2, SKP1B | E3 ubiquitin ligase SCF
           complex subunit SKP1/ASK1 family protein |
           chr5:16854495-16855516 REVERSE LENGTH=171
          Length = 171

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 25/149 (16%)

Query: 193 ISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFCEKKLK 252
           I+L+SSD   FE+++ VA+ ES+ +K +IE    ++ IP+P V+S +L +VI +C++ ++
Sbjct: 7   ITLKSSDGENFEIDEAVAL-ESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVE 65

Query: 253 FDQLFK-----------------SIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANF 295
             +  +                 S  E LKT       W + F+  +      L  AAN+
Sbjct: 66  AAEKSETTADAAAATTTTTVASGSSDEDLKT-------WDSEFIKVDQGTLFDLILAANY 118

Query: 296 LNIPSLFEFTSLFTGLQDRGENENKIQET 324
           LNI  L + T        +G+   +I++T
Sbjct: 119 LNIKGLLDLTCQTVADMIKGKTPEEIRKT 147


>AT1G20140.1 | Symbols: ASK4, SK4 | SKP1-like 4 |
           chr1:6986430-6987079 FORWARD LENGTH=163
          Length = 163

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 189 SQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFCE 248
           ++  I L+SSD   FE+ + VA+ +S+ +K +IE    ++ IP+P V+  +L +VI +C+
Sbjct: 4   TKKMIILKSSDGESFEIEEAVAV-KSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCK 62

Query: 249 KKLKF------DQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLF 302
           K ++       D+ F    E  +      + W + FV  +      L  AAN+LNI  L 
Sbjct: 63  KHVEAAAEAGGDKDFYGSAENDE-----LKNWDSEFVKVDQPTLFDLILAANYLNIGGLL 117

Query: 303 EFTSLFTGLQDRG 315
           + T      Q RG
Sbjct: 118 DLTCKAVADQMRG 130


>AT5G66870.1 | Symbols: ASL1, LBD36 | ASYMMETRIC LEAVES 2-like 1 |
          chr5:26706621-26707562 FORWARD LENGTH=313
          Length = 313

 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 6  NSRCAACKILRRNCTQNCVFAPLYEP-HNKMLQFQQECFQSPNIPNLFNNLVS 57
          +S CAACK LRR CTQ CVFAP + P   +   F  + F + N+  L N L S
Sbjct: 5  SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELAS 57


>AT2G23660.2 | Symbols: LBD10 | LOB domain-containing protein 10 |
          chr2:10060242-10061177 REVERSE LENGTH=311
          Length = 311

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 6  NSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNLVSEMAATT 63
          ++ CAACK+LRR CTQ CVFAP + P N +   F    F + N+  + N+L  +    T
Sbjct: 3  STPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61


>AT2G23660.1 | Symbols: LBD10 | LOB domain-containing protein 10 |
          chr2:10060242-10061177 REVERSE LENGTH=311
          Length = 311

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 6  NSRCAACKILRRNCTQNCVFAPLYEPHN-KMLQFQQECFQSPNIPNLFNNLVSEMAATT 63
          ++ CAACK+LRR CTQ CVFAP + P N +   F    F + N+  + N+L  +    T
Sbjct: 3  STPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61


>AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 |
           chr4:16480022-16480480 REVERSE LENGTH=152
          Length = 152

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 9/137 (6%)

Query: 188 VSQDTISLRSSDKVVFEMNKMVAISESKLLKDVIECHPNEDEIPVPRVSSLVLPEVISFC 247
           +S   I L SSD   FE+ + VAI +S+ +  ++E     D IP+  V S +L +VI +C
Sbjct: 1   MSSKMIVLMSSDGQSFEVEEAVAI-QSQTIAHMVEDDCVADGIPLANVESKILVKVIEYC 59

Query: 248 EKKLKFDQLFKSIGEILKTVFIPYQAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSL 307
            KK   D+      E L         W  +F++   S    L  AAN+LNI SLF+ T  
Sbjct: 60  -KKYHVDEANPISEEDLNK-------WDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQ 111

Query: 308 FTGLQDRGENENKIQET 324
                 +G+   +I+ T
Sbjct: 112 TVADMIKGKTPEEIRST 128