Miyakogusa Predicted Gene
- Lj2g3v3055290.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3055290.2 tr|Q9SGP0|Q9SGP0_ARATH F3M18.14 OS=Arabidopsis
thaliana GN=At1g28420 PE=3 SV=1,30.28,4e-17,Homeobox,Homeodomain; no
description,Homeodomain-like; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NU,CUFF.39636.2
(494 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03250.1 | Symbols: | Homeodomain-like superfamily protein |... 238 1e-62
AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 ... 93 5e-19
AT5G44180.2 | Symbols: | Homeodomain-like transcriptional regul... 62 1e-09
AT5G44180.1 | Symbols: | Homeodomain-like transcriptional regul... 62 1e-09
>AT4G03250.1 | Symbols: | Homeodomain-like superfamily protein |
chr4:1425050-1427744 FORWARD LENGTH=507
Length = 507
Score = 238 bits (606), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 189/461 (40%), Positives = 249/461 (54%), Gaps = 61/461 (13%)
Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLLKDEA 81
RKLKTP Q+MALE FY+ HKYP+EE K KLAEE+GLTEKQVSGWFCHRRLKDKR +K++
Sbjct: 23 RKLKTPMQVMALENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRHVKEDG 82
Query: 82 VANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDNKHLDPKEAESHGIYNQDISVADMTYGR 141
A G QDRSS V+QDRGSGL QDSCGS+K D + P+E ES +Y
Sbjct: 83 NAIGSQDRSSVVLQDRGSGLRQDSCGSTKQTDYWNPKPREVESQRLYMG----------- 131
Query: 142 RDYYPENGRGMDDTSSESSSFLQERLYSQGQDPYDMEPSRHRTPSGSLPPLNPKSATKMG 201
N G D TSS+ SS L++ L S D+E SR+ + +P+ G
Sbjct: 132 ------NADGEDSTSSDRSSSLRKNLVSSKDGIRDVESSRYVAHKDVI--QHPQFMRSYG 183
Query: 202 Y-KPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFEFQTEYPVHEA 260
Y KPSGYLKVKGE E+ AITAVK+QLGR Y EDGP LGVEFDPLPPGAFE QT VHE
Sbjct: 184 YNKPSGYLKVKGESENFAITAVKRQLGRQYQEDGPPLGVEFDPLPPGAFEPQTNPIVHEP 243
Query: 261 YHVANPVHLNSPEVPAVKRQPNLSSRHD-SYYTKFSSQDSH------------MEGVDFG 307
+V N + P + ++ N ++ + +K S D M G++ G
Sbjct: 244 IYVGNQRRPHLPHLLGTRKSFNPGPSYELARKSKLHSPDPDSEDDEHDDDDNIMVGMEPG 303
Query: 308 FLQDYDVQDTQDKKARQDINY---SQTFYNDANNFPGRNSSQDLYEDSTREVSAYNSSKN 364
+DKK+ + S +FY N+ P S ++ ++ S RE+ NS K
Sbjct: 304 L---------RDKKSFGEPRLKSPSTSFY---NSVPRHKSFKETFKGSPREIPVTNSKKG 351
Query: 365 HKMGKGNKRGVEGMRSYSTSNHRDHYEDDIAVKPTDILLLEYDNIDPKNVQRSEHVKSKP 424
+K EG R++ +N ++ +I + +YDN + N R +K
Sbjct: 352 W---ISSKSWAEGSRNHLVANVQNLSGSNIETNQSH----DYDN-NISNGGRKTGYLTKS 403
Query: 425 SNSIRKSRVPMDPE--ERGLSTRMAKEEVFKGDRKAKKKYR 463
S + SR PE +RG S+ MA ++ G+R K R
Sbjct: 404 SKLLPPSRS-RSPESMDRGPSSGMAG--IYHGERNQMKMQR 441
>AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460
FORWARD LENGTH=1705
Length = 1705
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 103/245 (42%), Gaps = 59/245 (24%)
Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKRLLKDEA 81
R++KTP QL LEK Y KYPSE + +L+E++ L+++Q+ WFCHRRLKD K +
Sbjct: 43 RQMKTPFQLETLEKVYSEEKYPSEATRAELSEKLDLSDRQLQMWFCHRRLKD----KKDG 98
Query: 82 VANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDNKHLDPKEAESHGIYNQDISVADMTYGR 141
+N S +Q + GS D++
Sbjct: 99 QSNKPVKSSVAAVQSASVNELPAAAGSVPEQDSRS------------------------- 133
Query: 142 RDYYPENGRGMDDTSSESSSFLQERLYSQGQDPYDMEPSRHRTPSGSLPPLNPKSATKMG 201
D+ SES G PY SR SGS +
Sbjct: 134 ------------DSGSES-----------GCSPYSN--SRRNFASGSSSSRAELDEYETM 168
Query: 202 YKPSGYLKVKGEIEHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFEFQTEYPVHEAY 261
KPS Y + H AI ++ QLG +DGP+LG+EFDPLPPGAF P+
Sbjct: 169 GKPS-YESRLSTMVHRAIVCIEAQLGEPLRDDGPILGMEFDPLPPGAF----GTPIAMQK 223
Query: 262 HVANP 266
H+ +P
Sbjct: 224 HLLHP 228
>AT5G44180.2 | Symbols: | Homeodomain-like transcriptional
regulator | chr5:17783172-17789872 FORWARD LENGTH=1507
Length = 1507
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
RK+KT AQL LE Y A YPSE + L+ ++ L+++Q+ WFCHRRLK+++
Sbjct: 21 RKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKERK 74
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 215 EHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFEFQTEYPVH 258
E AI V+ QLG ++GP+LG+EFDPLPPGAF E P H
Sbjct: 137 EVRAIGYVEAQLGERLRDNGPVLGMEFDPLPPGAFGMPIEMPSH 180
>AT5G44180.1 | Symbols: | Homeodomain-like transcriptional
regulator | chr5:17783172-17789872 FORWARD LENGTH=1694
Length = 1694
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 22 RKLKTPAQLMALEKFYDAHKYPSEEKKLKLAEEIGLTEKQVSGWFCHRRLKDKR 75
RK+KT AQL LE Y A YPSE + L+ ++ L+++Q+ WFCHRRLK+++
Sbjct: 21 RKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKERK 74
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 215 EHAAITAVKKQLGRHYLEDGPLLGVEFDPLPPGAFEFQTEYPVH 258
E AI V+ QLG ++GP+LG+EFDPLPPGAF E P H
Sbjct: 137 EVRAIGYVEAQLGERLRDNGPVLGMEFDPLPPGAFGMPIEMPSH 180