Miyakogusa Predicted Gene

Lj2g3v3034040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3034040.1 tr|B9HJE6|B9HJE6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_766170 PE=4
SV=1,63.38,2e-18,4FE4S_FER_1,4Fe-4S ferredoxin, iron-sulphur binding,
conserved site; PUTATIVE UNCHARACTERIZED
PROTEI,NODE_66079_length_1171_cov_62.030743.path2.1
         (277 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G01620.1 | Symbols: MEE11 | RNI-like superfamily protein | ch...   167   6e-42
AT3G26000.1 | Symbols:  | Ribonuclease inhibitor | chr3:9507042-...   133   1e-31
AT3G27290.1 | Symbols:  | RNI-like superfamily protein | chr3:10...   105   2e-23

>AT2G01620.1 | Symbols: MEE11 | RNI-like superfamily protein |
           chr2:278204-279226 FORWARD LENGTH=292
          Length = 292

 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/253 (37%), Positives = 134/253 (52%), Gaps = 36/253 (14%)

Query: 1   MSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKITSKANGRLKTLALMNCTHIT 60
           M +V ++LRDA+ ++   W  +++E PLSSRL+D+IL + +SK+ G+LKTL L  C  +T
Sbjct: 36  MIRVSRSLRDAIRDETALWTKLVIEPPLSSRLTDDILSEFSSKSAGKLKTLILRQCLMVT 95

Query: 61  DKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRSNCLSTLRINGIYNLQKEHL 120
           +KGL+RVV+ NPLI K+ +P C+G+T EG+   V++L + ++ L TL ING+    K+HL
Sbjct: 96  NKGLRRVVDANPLITKIIVPGCSGLTPEGIMECVESLSKNNHKLETLHINGVNGFTKQHL 155

Query: 121 DMLAMNLRKNVPLEEQQMQKPNYYHKRGSFTVFSREENQRIIDLETCPKCFEVTMVYDCP 180
             L                          +T  S E     IDLE CPKC EV M+  C 
Sbjct: 156 SAL--------------------------YTYLSSEGT---IDLEVCPKCDEVRMIPSCS 186

Query: 181 KVECMKREKPQVQCRGCKFCIPRXXXXXXXXXXXXXXXXXXXXXXXXXX----WLQLPKC 236
           +  C ++++   +CRGC  CIPR                              WL LPKC
Sbjct: 187 RESCNQKQR---KCRGCWLCIPRCAECAVCLVGSDTESQEAACGNDDVLCLECWLVLPKC 243

Query: 237 NFCNKPYCKQHEN 249
            FCNKPYC  H +
Sbjct: 244 RFCNKPYCTNHSS 256


>AT3G26000.1 | Symbols:  | Ribonuclease inhibitor |
           chr3:9507042-9508542 REVERSE LENGTH=453
          Length = 453

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 121/206 (58%), Gaps = 9/206 (4%)

Query: 1   MSQVCKALRDAVNNDVLPWLNVIVERPLSSRLSDEILVKITSKANGRLKTLALMNCTHIT 60
           +S VCK+L   V +D L W ++ + RPL+ ++++E L+ +T +A G ++ L +++C  IT
Sbjct: 219 VSMVCKSLHTTVCDDTLLWKHIHICRPLNEKITEEALLHLTERAQGTMQCLRIVDCCRIT 278

Query: 61  DKGLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRSNC-LSTLRINGIYNLQKEH 119
           D  L+RVV +N  + K+ +P CT IT +G+   ++ L       +  L++ G++ + K+H
Sbjct: 279 DDCLKRVVARNRQVVKIGVPGCTRITIDGILSVLRDLKSAGKLQVKHLQLRGLFGVTKDH 338

Query: 120 LDMLA--MNLRKNVPLEEQQMQKPNYYHKRGSFTVFSREENQRIIDLETCPKCFEVTMVY 177
            D L   +N+   V   +Q +QKP +YH RG   V    ++ R +D+E CPKC    +VY
Sbjct: 339 YDELIDLLNIDNKV---KQTIQKPRFYH-RGEACVSC--DDDRALDIEMCPKCQNFKLVY 392

Query: 178 DCPKVECMKREKPQVQCRGCKFCIPR 203
           DCP  +C  ++K   +CR C  CI R
Sbjct: 393 DCPAEDCKGKKKGSEECRACSLCIQR 418


>AT3G27290.1 | Symbols:  | RNI-like superfamily protein |
           chr3:10080038-10081265 REVERSE LENGTH=382
          Length = 382

 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 11/206 (5%)

Query: 4   VCKALRDAVNNDVLPWLNV-IVERPLSSRLSDEILVKITSKANGRLKTLALMNCTHITDK 62
           VC++LRD+V  +   W ++ + +  L  R++DE L+K+T +A G ++ L L  C  ITD 
Sbjct: 149 VCRSLRDSVGKEPFFWTSIDLNDSFLQYRVTDESLLKLTRRALGGVRCLNLGGCVGITDY 208

Query: 63  GLQRVVEQNPLINKLHIPACTGITAEGVTRAVQTLCQRSNCLS--TLRINGIYNLQKEHL 120
           GL++V+  NP + KL +  C  ++  G+   ++ L + SN L   +L   G     KE  
Sbjct: 209 GLKQVLASNPHLTKLSVSGCLRLSTAGLVSTLRDL-KSSNRLGVKSLITGGALYFTKEQF 267

Query: 121 DMLAMNLRKNVPLEEQQMQKPNYYHKRGSFTVFSREENQRIIDLETCPKCFEVTMVYDCP 180
             L + L  +  +  Q+ +K  Y   R  F +    E+ R+ DLE CP C + ++V+DCP
Sbjct: 268 KELNLLLGGDAKVGLQERKKRFYTSCRSEFYL----EDDRVTDLEICPWCEKPSLVFDCP 323

Query: 181 KVEC-MKREKP--QVQCRGCKFCIPR 203
              C +K + P  +  CR C  CI R
Sbjct: 324 ADTCPLKGQYPYSKSSCRACVVCIER 349