Miyakogusa Predicted Gene

Lj2g3v3034030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3034030.1 tr|A9S6P3|A9S6P3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_124931,46.99,0.000000000000001,no description,Dynein
light chain, type 1/2; DLC,Dynein light chain, type 1/2;
Dynein_light,Dynein l,NODE_55810_length_989_cov_44.591507.path2.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23220.1 | Symbols:  | Dynein light chain type 1 family prote...   193   2e-50
AT5G20110.1 | Symbols:  | Dynein light chain type 1 family prote...   127   2e-30
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    78   1e-15
AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prote...    73   4e-14
AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prote...    72   1e-13
AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prote...    71   2e-13

>AT1G23220.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD LENGTH=129
          Length = 129

 Score =  193 bits (491), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/132 (71%), Positives = 106/132 (80%), Gaps = 4/132 (3%)

Query: 1   MEGAEEELERRSRFLKSLIQKKKVSEKQEQHDHIQNNNVRVRACDMPLLLQNRAFCCARD 60
           MEG E ELERRS+FL SLIQKKK  E+Q+Q D     NVRVRA DMPL  QNRAF  +R+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEF---NVRVRASDMPLPQQNRAFSLSRE 57

Query: 61  LLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVTHSLGGFLYFSIDKVYI 120
           +L++ P  K D KRLA  LKK+FDS+YGPAWHCIVG+SFGSYVTHS GGFLYF IDKVY+
Sbjct: 58  ILNATPG-KADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYV 116

Query: 121 LLFKTAVEPLDH 132
           LLFKTAVEPLD 
Sbjct: 117 LLFKTAVEPLDQ 128


>AT5G20110.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr5:6791542-6793253 REVERSE LENGTH=209
          Length = 209

 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 38  NVRVRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGS 97
            VR+ A DMP  +Q  AF CAR  LDS+   K  +K +A  LKKEFD  YGPAWHCIVGS
Sbjct: 116 TVRILAADMPGFMQAHAFRCARMTLDSL--EKFSSKHMAFNLKKEFDKGYGPAWHCIVGS 173

Query: 98  SFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP 129
           SFGS+VTHS G F+YFS+DK+Y+LLFKT V P
Sbjct: 174 SFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRP 205


>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19458844-19459235 REVERSE LENGTH=94
          Length = 94

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 37  NNVRVRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVG 96
               V   DMP+ +Q +A   A   LD    +  D K +A  +KKEFD  YG  W C+VG
Sbjct: 4   GKAMVEDSDMPVKMQMQAMAFASQALDLF--DVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 97  SSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEP 129
           S+FG + THS G F+YF ++ +  L+FK A  P
Sbjct: 62  SNFGCFFTHSKGTFIYFQLETLKFLIFKGASTP 94


>AT3G16120.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr3:5465035-5465395 FORWARD LENGTH=93
          Length = 93

 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 37  NNVRVRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVG 96
              +V   DMP+ +Q +A   A   LD    +  D+  +A  +KKEFD  YG  W C+VG
Sbjct: 4   GKAKVEETDMPVKMQMQAMKIASQSLDLF--DVFDSISIAAHIKKEFDERYGSGWQCVVG 61

Query: 97  SSFGSYVTHSLGGFLYFSIDKVYILLFKTAV 127
           ++FG + THS G F+YF +  +  L+FK A 
Sbjct: 62  TNFGCFFTHSKGTFIYFHLGTLNFLIFKGAT 92


>AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:9036344-9037825 FORWARD LENGTH=123
          Length = 123

 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 41  VRACDMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFG 100
           +++ DM   +Q  A   A    +     K     +A  +KKEFD  +G  WHCIVG +FG
Sbjct: 42  IKSADMKDDMQKEAIEIAISAFEKYSVEK----DIAENIKKEFDKKHGATWHCIVGRNFG 97

Query: 101 SYVTHSLGGFLYFSIDKVYILLFKTA 126
           SYVTH    F+YF +D+  +LLFK+ 
Sbjct: 98  SYVTHETNHFVYFYLDQKAVLLFKSG 123


>AT4G27360.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:13694032-13694517 FORWARD LENGTH=103
          Length = 103

 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 3/86 (3%)

Query: 45  DMPLLLQNRAFCCARDLLDSMPANKLDTKRLALTLKKEFDSSYGPAWHCIVGSSFGSYVT 104
           DM   ++  A   A   LD    +  +  ++A  +KKEFD SYG  W CIVG+ FGS+VT
Sbjct: 12  DMKQTMKEDALSLASKALDCF--DVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 69

Query: 105 HSLGGFLYFSIDKVYILLFKTAV-EP 129
           H  G F++FS+  + ILLFK +V EP
Sbjct: 70  HCSGCFIHFSVGSLTILLFKGSVGEP 95