Miyakogusa Predicted Gene
- Lj2g3v3022810.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v3022810.1 Non Chatacterized Hit- tr|I3SB95|I3SB95_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,RRM_1,RNA
recognition motif domain; RRM,RNA recognition motif domain; SUBFAMILY
NOT NAMED,NULL; PRE-,CUFF.39612.1
(125 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G12190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 232 4e-62
AT2G14870.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 114 1e-26
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 3e-08
AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotei... 53 6e-08
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 52 1e-07
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 52 1e-07
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 52 1e-07
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 51 2e-07
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 51 2e-07
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 6e-07
AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 | chr5:2294248-22... 49 9e-07
AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 2e-06
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 47 2e-06
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 47 2e-06
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 47 2e-06
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 47 3e-06
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 47 3e-06
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 46 6e-06
AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 46 7e-06
AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human... 46 7e-06
>AT5G12190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3940731-3941105 REVERSE LENGTH=124
Length = 124
Score = 232 bits (592), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 111/123 (90%), Positives = 114/123 (92%)
Query: 1 MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTA 60
M TISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIG K T+GTA
Sbjct: 1 MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTA 60
Query: 61 FVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIARMQEKYGVS 120
FVVYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKMSKKFDQKK EDEI ++QEKYGVS
Sbjct: 61 FVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVS 120
Query: 121 TKD 123
TKD
Sbjct: 121 TKD 123
>AT2G14870.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:6391172-6391477 FORWARD LENGTH=101
Length = 101
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/70 (72%), Positives = 59/70 (84%)
Query: 8 KGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDI 67
K N RLPPEV R+LY+ NLPF+ITSE+ YD+FG+Y IRQ+RIG K T+GTAFVVYEDI
Sbjct: 9 KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68
Query: 68 YDAKTAVDHL 77
YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDT---RGTAFVVYEDIYDAKTAVDHL 77
L+V LP++ T EE+ + F K+G I ++ + KDT RG AFV+Y AK A+D L
Sbjct: 229 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 288
Query: 78 SGFNVANRYLIVLYYQQAKMSKK 100
R L +L + MS K
Sbjct: 289 DKLPFQGRTLHILPAKPRAMSAK 311
>AT2G30260.1 | Symbols: U2B'' | U2 small nuclear ribonucleoprotein B
| chr2:12905557-12907434 REVERSE LENGTH=232
Length = 232
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 9 GNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIY 68
G +PP N +L+++NLP TS + +F +Y ++IR+ K G AFV YED
Sbjct: 150 GQETMPP--NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKP--GIAFVEYEDDV 205
Query: 69 DAKTAVDHLSGFNVANRYLIVLYY 92
A A+ L GF + + +V+ +
Sbjct: 206 QASIAMQPLQGFKITPQNPMVISF 229
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
+R +YV NLP +I E+ D+F KYG + QI + G AFV +ED DA A+
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 78 SGFNVANRYLIV 89
G++ +L V
Sbjct: 66 DGYDFDGHHLRV 77
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
+R +YV NLP +I E+ D+F KYG + QI + G AFV ++D DA+ A+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 78 SGFNVANRYLIV 89
G++ L V
Sbjct: 66 DGYDFDGHRLRV 77
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
+R +YV NLP +I E+ D+F KYG + QI + G AFV ++D DA+ A+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 78 SGFNVANRYLIV 89
G++ L V
Sbjct: 66 DGYDFDGHRLRV 77
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
+R +YV NLP +I E+ D+F KYG + QI + G AFV +ED DA A+
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65
Query: 78 SGFNVANRYLIV 89
G++ +L V
Sbjct: 66 DGYDFDGHHLRV 77
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
+R +YV NLP +I E+ D+F KYG + QI + G AFV ++D DA+ A+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65
Query: 78 SGFNVANRYLIVLYYQQAKMS 98
G++ L V + S
Sbjct: 66 DGYDFDGHRLRVELAHGGRRS 86
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 19 RVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKD--TRGTAFVVYEDIYDAKTAVDH 76
R L+V NLP++++ ++ ++FG+ G + + I KD RG AFV +A+ A+D
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 77 LSGFNVANRYLIVLYYQQAK 96
F V+ R + V + ++ K
Sbjct: 155 FDTFQVSGRIISVSFARRFK 174
>AT5G07290.1 | Symbols: AML4, ML4 | MEI2-like 4 |
chr5:2294248-2298491 FORWARD LENGTH=907
Length = 907
Score = 48.9 bits (115), Expect = 9e-07, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHLSGF 80
L+V NL +I++EE++ IF YG IR++R T ++ + D+ AK A+ L+G
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVR--RTMHENSQVYIEFFDVRKAKVALQGLNGL 354
Query: 81 NVANRYL 87
VA R L
Sbjct: 355 EVAGRQL 361
>AT2G21440.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:9173712-9179065 REVERSE LENGTH=1003
Length = 1003
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 19 RVLYVRNLPFNITSEEM---YDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAK---- 71
R L++RNLPF++T EE+ + +FG+ ++ + TK GTAFV ++ DA
Sbjct: 561 RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFK-TADASVAAI 619
Query: 72 TAVDHLSGFNV--ANRYLIVLYYQQAKMSKKFDQKKKED 108
+A D SG V R L V+ K +K + KK E+
Sbjct: 620 SAADTASGVGVLLKGRQLNVMRAVGKKAAKDIELKKTEE 658
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
NR +YV NLP +I E+ D+F KYG I I + G AFV +ED DA A+
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 78 SGFN 81
G++
Sbjct: 66 DGYD 69
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 15 PEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRI---GTTKDTRGTAFVVYEDIYDAK 71
PE L+V NL + +TSE + F + G + R+ G T +RG FV Y + +
Sbjct: 173 PETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEME 232
Query: 72 TAVDHLSGFNVANRYLIVLYYQQAKM 97
TA++ L GF + R + V Q K
Sbjct: 233 TALESLDGFELEGRAIRVNLAQGKKF 258
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIYDAKTAVDHL 77
NR +YV NLP +I E+ D+F KYG I I + G AFV +ED DA A+
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 78 SGFN 81
G++
Sbjct: 66 DGYD 69
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRI---GTTKDTRGTAFVVYEDIYDAKTAVDHL 77
L+VRNLP+ T EE+ + F +G I ++ + TK +RG A+++Y A A++ L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 78 SGFNVANRYLIVLYYQQAKMSKK 100
+ R L +L + + S K
Sbjct: 356 DNSSFQGRLLHILPAKHRETSDK 378
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRI---GTTKDTRGTAFVVYEDIYDAKTAVDHL 77
LYV NLP+ ITS E+ IFG+ G + ++I T +RG FV I +AK A+
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 78 SGFNVANRYLIVLY 91
+ + R + V +
Sbjct: 178 NSSQIGGRTVKVNF 191
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKD--TRGTAFVVYEDIYDAKTAVDHLS 78
++V+NLP ++T+ + D+F K+G I ++ T +D +RG FV +E A A+ L+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 79 GFNVANRYLIVLYYQQAKMSKKFDQKKKEDE 109
VA++ + V K KK D+ K E++
Sbjct: 174 STIVADKEIYV-----GKFMKKTDRVKPEEK 199
>AT5G64200.2 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 14 PPEVNRV--LYVRNLPFNITSEEMYDIFGKYGAIRQI---RIGTTKDTRGTAFVVYEDIY 68
PP+++ L V N+ F T++++Y +F KYG + + R T D+RG AFV Y+
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 69 DAKTAVDHLSGFNVANRYLIVLY 91
+A AV+ L G V R + V +
Sbjct: 69 EAHKAVERLDGRVVDGREITVQF 91
>AT5G64200.1 | Symbols: ATSC35, SC35, At-SC35 | ortholog of human
splicing factor SC35 | chr5:25681849-25683553 REVERSE
LENGTH=303
Length = 303
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 14 PPEVNRV--LYVRNLPFNITSEEMYDIFGKYGAIRQI---RIGTTKDTRGTAFVVYEDIY 68
PP+++ L V N+ F T++++Y +F KYG + + R T D+RG AFV Y+
Sbjct: 9 PPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKD 68
Query: 69 DAKTAVDHLSGFNVANRYLIVLY 91
+A AV+ L G V R + V +
Sbjct: 69 EAHKAVERLDGRVVDGREITVQF 91