Miyakogusa Predicted Gene

Lj2g3v3022770.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3022770.1 Non Chatacterized Hit- tr|F6HA93|F6HA93_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,44.83,3e-19,seg,NULL; AvrRpt-cleavage,Pathogenic type III effector
avirulence factor Avr cleavage site,CUFF.39625.1
         (116 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19473.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    78   1e-15
AT5G64850.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    52   6e-08
AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    50   3e-07

>AT5G19473.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) family
           protein | chr5:6569268-6570680 FORWARD LENGTH=99
          Length = 99

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 20/117 (17%)

Query: 1   MEQVQKKHGVTTVPQFGGWDQSAPG-ATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNER 59
           M++ ++    T VPQFGGWDQ  P  AT+YS+VF++ARA +KQ K     ++  SLG+E+
Sbjct: 1   MDKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNK---AGVRHSSLGSEQ 57

Query: 60  EFINANRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRILTYINCCIRP 116
           E + + R                             ++  VM KKRILTYINCCIRP
Sbjct: 58  ELMVSVR----------------RNHQQLHHRHETQDDDPVMKKKRILTYINCCIRP 98


>AT5G64850.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           plasma membrane; EXPRESSED IN: 22 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: RPM1-interacting protein 4, defence response
           (InterPro:IPR008700); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT5G09960.1); Has 30201
           Blast hits to 17322 proteins in 780 species: Archae -
           12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
           Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
           (source: NCBI BLink). | chr5:25921585-25923038 FORWARD
           LENGTH=114
          Length = 114

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 12  TVPQFGGWDQSAPGATDYSMVFTQARAKKKQQKIDLTDIKRHSLGNEREFINANRXXXXX 71
           +VPQFG WDQ   G+ DYSM F++ R   + +K++  D  R SLGNE E IN        
Sbjct: 14  SVPQFGDWDQKG-GSIDYSMDFSKIR---EMRKLNKRDASRASLGNEEELINPFHDQPPV 69

Query: 72  XXXXXXXXXXXXXXXXXXXXXXXXEEPIVMGKKRILTYINCCIR 115
                                          ++RI +  NCC++
Sbjct: 70  DTAKPKKLTTVHSDNNNRNEFSHHHPHSPSRRRRIFSCFNCCVK 113


>AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function
          unknown; INVOLVED IN: biological_process unknown;
          LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant
          structures; EXPRESSED DURING: 13 growth stages;
          CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4,
          defence response (InterPro:IPR008700); BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322
          proteins in 780 species: Archae - 12; Bacteria - 1396;
          Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
          0; Other Eukaryotes - 2996 (source: NCBI BLink). |
          chr5:3106503-3107658 FORWARD LENGTH=112
          Length = 112

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 12 TVPQFGGWDQSAPGA-TDYSMVFTQARAKKKQQKIDLTDIKRHSLGNEREFI 62
          +VPQFG WDQ   G   DYSM FT+ R  +KQ K D +   R SLGNE E I
Sbjct: 14 SVPQFGDWDQKGGGTMPDYSMDFTKIREMRKQNKRDPS---RASLGNEEELI 62