Miyakogusa Predicted Gene

Lj2g3v3022760.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v3022760.1 tr|G7K315|G7K315_MEDTR Dihydropyrimidinase
OS=Medicago truncatula GN=MTR_5g089280 PE=4
SV=1,85.88,0,Metallo-dependent hydrolases,NULL; Composite domain of
metallo-dependent hydrolases,Metal-dependent ,CUFF.39624.1
         (538 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12200.1 | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-394472...   858   0.0  
AT4G04955.1 | Symbols: ATALN, ALN | allantoinase | chr4:2522301-...    85   2e-16

>AT5G12200.1 | Symbols: PYD2 | pyrimidine 2 | chr5:3941700-3944727
           REVERSE LENGTH=531
          Length = 531

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/513 (77%), Positives = 456/513 (88%), Gaps = 3/513 (0%)

Query: 26  IITPSSLSQPNNNQFCEAGIGHTESSCGTGTPSSSKLLIKGGTVVNAHHQHVADVYIEDG 85
           ++ PS  +  +  QFC AG  +   SCG    SS+++LIKGGTVVNAHHQ +ADVY+E+G
Sbjct: 14  LLFPSPSASESTTQFCSAGRENGVGSCGV---SSTRILIKGGTVVNAHHQELADVYVENG 70

Query: 86  IIVAVNPTINVGDEIKVIDATGKFIMPGGIDPHTHLEFEFMNTVTVDDFFSGQAAALAGG 145
           IIVAV P I VGDE+ V+DATGKF+MPGGIDPHTHL  EFM T T+DDFFSGQAAALAGG
Sbjct: 71  IIVAVQPNIKVGDEVTVLDATGKFVMPGGIDPHTHLAMEFMGTETIDDFFSGQAAALAGG 130

Query: 146 TTMHIDFVIPLNGSLTAGFEAYEKKAKKACMDYGFHMAVTKWDETVSREMEIMVKEKGIN 205
           TTMHIDFVIP+NG+L AGFEAYE K++++CMDYGFHMA+TKWDE VSR+ME++VKEKGIN
Sbjct: 131 TTMHIDFVIPVNGNLVAGFEAYENKSRESCMDYGFHMAITKWDEGVSRDMEMLVKEKGIN 190

Query: 206 SFKFFMAYKGALMINDELLLEAFKKCKSLGALAMVHAENGDAVYEGQNRMIELGITGPEG 265
           SFKFF+AYKG+LM+ D+LLLE  K+CKSLGALAMVHAENGDAV+EGQ RMIELGITGPEG
Sbjct: 191 SFKFFLAYKGSLMVTDDLLLEGLKRCKSLGALAMVHAENGDAVFEGQKRMIELGITGPEG 250

Query: 266 HALSRPAVLEGEATARAIRLADFVNTPLYVVHVMSIDAMEEIAKARKSGQRVIGEPVASG 325
           HALSRP VLEGEATARAIRLA F+NTPLYVVHVMS+DAM+EIAKARKSGQ+VIGEPV SG
Sbjct: 251 HALSRPPVLEGEATARAIRLARFINTPLYVVHVMSVDAMDEIAKARKSGQKVIGEPVVSG 310

Query: 326 LALDESWLWHPDFETAARYVMSPPIRKRGHDKALQAALSTGVLQLVGTDHCAFNSTQKAF 385
           L LD+ WLW PDF  A++YVMSPPIR  GH KALQ ALSTG+LQLVGTDHC FNSTQKA 
Sbjct: 311 LILDDHWLWDPDFTIASKYVMSPPIRPVGHGKALQDALSTGILQLVGTDHCTFNSTQKAL 370

Query: 386 GIDDFRKIPNGVNGIEERMHIVWDIMVDSGQISVTDYVRVTSTECAKVFNIYPKKGAILP 445
           G+DDFR+IPNGVNG+EERMH++WD MV+SGQ+S TDYVR+TSTECA++FNIYP+KGAIL 
Sbjct: 371 GLDDFRRIPNGVNGLEERMHLIWDTMVESGQLSATDYVRITSTECARIFNIYPRKGAILA 430

Query: 446 GSDADIIILNPNSSFEITVKSHHSRLDTNVYEGRRGKGKVEVTIAGGRIVWENNELKVAP 505
           GSDADIIILNPNSS+EI+ KSHHSR DTNVYEGRRGKGKVEVTIAGGRIVWEN ELKV P
Sbjct: 431 GSDADIIILNPNSSYEISSKSHHSRSDTNVYEGRRGKGKVEVTIAGGRIVWENEELKVVP 490

Query: 506 GTGKYIKTPPFNYLFDGLDKKDASYLNSLQAPV 538
            +GKYI+ PPF+YLFDG++K DA+YL+SL+APV
Sbjct: 491 RSGKYIEMPPFSYLFDGIEKSDANYLSSLRAPV 523


>AT4G04955.1 | Symbols: ATALN, ALN | allantoinase |
           chr4:2522301-2525259 REVERSE LENGTH=506
          Length = 506

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 186/443 (41%), Gaps = 45/443 (10%)

Query: 80  VYIEDGIIVAVNPTINV----GDEIKVIDATGKFIMPGGIDPHTHLEFEFMNTVTVDDFF 135
           V ++ GIIV+V   ++        +KVID     +MPG ID H HL+         + F 
Sbjct: 63  VEVKGGIIVSVVKEVDWHKSQRSRVKVIDYGEAVLMPGLIDVHVHLDDP--GRSEWEGFP 120

Query: 136 SGQAAALAGGTTMHIDFVIPLNG-SLTAGFEAYEKKAKKAC----MDYGFHMAVTKWDET 190
           SG  AA AGG T  +D  +PLN    T   E  + K + A     +D GF   +   +  
Sbjct: 121 SGTKAAAAGGITTLVD--MPLNSFPSTVSPETLKLKIEAAKNRIHVDVGFWGGLVPDNAL 178

Query: 191 VSREMEIMVKEKGINSFKFFMAYKGALMINDELLLEAFKKCKSLGALA------MVHAE- 243
            S  +E ++ + G+   K FM   G   IND  +       + L  LA      +VHAE 
Sbjct: 179 NSSALESLL-DAGVLGLKSFMCPSG---INDFPMTNITHIKEGLSVLAKYKRPLLVHAEI 234

Query: 244 -NGDAVYEGQNRMIELGITGPEGHALSRPAVLEGEATARAIRLADFVN-------TPLYV 295
                + +G        +T    +  +RP   E  A    + + +            L++
Sbjct: 235 ERDLEIEDGSENDPRSYLT----YLKTRPTSWEEGAIRNLLSVTENTRIGGSAEGAHLHI 290

Query: 296 VHVM-SIDAMEEIAKARKSGQRVIGEPVASGLALDESWLWHPDFETAARYVMSPPIRKRG 354
           VH+  +  +++ I +A+  G  V  E     LA     +  P+ +T  R+  SPPIR   
Sbjct: 291 VHLSDASSSLDLIKEAKGKGDSVTVETCPHYLAFSAEEI--PEGDT--RFKCSPPIRDAA 346

Query: 355 HDKALQAALSTGVLQLVGTDHCAFNSTQKAFGIDDFRKIPNGVNGIEERMHIVWDIMVDS 414
           + + L  AL  G + ++ +DH       K     +F K   G++ ++  + I W      
Sbjct: 347 NREKLWEALMEGDIDMLSSDHSPTKPELKLMSDGNFLKAWGGISSLQFVLPITWSYGKKY 406

Query: 415 GQISVTDYVRVTSTECAKVFNIYPKKGAILPGSDADIIILNPNSSFEITVKS--HHSRLD 472
           G +++       S   +K+  ++  KGA+  G  AD+++  P + F++      H     
Sbjct: 407 G-VTLEQVTSWWSDRPSKLAGLH-SKGAVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPS 464

Query: 473 TNVYEGRRGKGKVEVTIAGGRIV 495
            + Y GRR  GKV  T   G +V
Sbjct: 465 ISAYLGRRLSGKVVSTFVRGNLV 487